+E Transcription factors KO #

  Transcription Factors - Shigella flexneri 2457T (serotype 2a)

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D S2100 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D S0061 araC; transcriptional regulator for ara operon K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D S4647 hpaA; putative 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein D S3765 rhaR; positive regulator for rhaRS operon K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D S3766 rhaS; positive regulator for rhaBAD operon K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D S3623 adiY; putative ARAC-type regulatory protein K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA D S2638 yfeG; putative ARAC-type regulatory protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D S0475 envY; envelope protein K11920 envY; AraC family transcriptional regulator D S3589 soxS; regulation of superoxide response regulon K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator D S1690 marA; transcriptional activator of defense systems K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator D S4699 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D S4171 yhiW; putative ARAC-type regulatory protein K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator D S4172 yhiX; putative ARAC-type regulatory protein K21905 gadX; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator D S3625 melR; regulator of melibiose operon K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D S2427 ada; O6-methylguanine-DNA methyltransferase; transcription activator/repressor K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D S3017 gcvA; positive regulator of gcv operon K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D S3911 ilvY; ilvC positive regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D S3849 metR; regulator for metE and metH K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D S0019 nhaR; transcriptional activator of nhaA K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D S3701 oxyR; activator of hydrogen peroxide-inducible genes OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D S3101 iciA; replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D S0073 leuO; probable transcriptional activator for leuABCD operon K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D S2756 hcaR; transcriptional activator of hca cluster K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator D S3370 tdcA; transcriptional activator of tdc operon K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator D S0450 ybbS; putative transcriptional regulator LYSR-type K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon D S1362 cysB; positive transcriptional regulator for cysteine regulon K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D S2165 cbl; transcriptional regulator cys regulon K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D S2166 nac; nitrogen assimilation control protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D S4447 yjiE; putative LYSR-type transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D S3498 yhcS; putative LYSR-type transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D S3306 ygiP; putative LYSR-type transcriptional regulator K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon D S3921 yifA; hypothetical protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D S0836 deoR; Deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D S4473 putative deoR family transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D S4319 glpR; repressor of the glp operon K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D S2275 gatR; galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor D S3381 agaR; putative DEOR-type transcriptional regulator of aga operon K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D S3014 fucR; positive regulator of the fuc operon K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D S2921 srlR; regulator for gut (srl), glucitol operon K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor D S4616 yjfQ; putative DEOR-type transcriptional regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor D S3790 yihW; putative DEOR-type transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor C LacI family D S2365 galS; mgl repressor, galactose operon inducer K02529 galR; LacI family transcriptional regulator, galactose operon repressor D S3045 galR; repressor of galETK operon K02529 galR; LacI family transcriptional regulator, galactose operon repressor D S3931 rbsR; regulator for rbs operon K02529 galR; LacI family transcriptional regulator, galactose operon repressor D S3735 cytR; regulator for deo operon, udp, cdd, tsx, nupC, and nupG K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D S0077 fruR; transcriptional repressor of fru operon and others K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D S4511 treR; repressor of treA,B,C K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D S2928 ascG; ascBF operon repressor K03487 ascG; LacI family transcriptional regulator, asc operon repressor D S1818 purR; transcriptional repressor for pur regulon, glyA, glnB, prsA, speA K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D S4302 gntR; regulator of gluconate (gnt) operon K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D S3322 ebgR; regulator of ebg operon K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor D S1777 malI; repressor of malXY K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein C GntR family D S3991 yidP; putative transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator D S4369 yhfR; putative transcriptional regulator K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator D S0580 farR; transcriptional regulator of succinyl CoA synthetase operon K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D S1264 fadR; negative regulator for fad regulon, and positive activator of fabA K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D S0112 pdhR; transcriptional regulator for pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D S3220 glcC; transcriptional activator for glc operon K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator D S4452 uxuR; regulator for uxu operon K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D S3345 exuR; negative regulator of exu regulon, exuT, uxaAC, and uxuB K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D S4125 lldR; transcriptional regulator K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator D S4002 yidW; regulator protein for dgo operon K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor D S3479 yhcK; putative FADA-type transcriptional regulator K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor D S1897 hypothetical protein K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator D S2876 ygaE; putative transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D S1680 ydfH; hypothetical protein K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor D S4658 yjjM; hypothetical protein K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism C TetR/AcrR family D S0416 acrR; acrAB operon repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D S4088 ttk; putative transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator D S1086 ycdC; putative tet operon regulator K09017 rutR; TetR/AcrR family transcriptional regulator D S1807 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D S1772 uidR; repressor for uid operon K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D S4501 yjgJ; hypothetical protein K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA D S1195 ycfQ; hypothetical protein K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor D S3699 yijC; hypothetical protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D S0787 ybiH; putative transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D S0842 putative DEOR-type transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response C Lrp/AsnC family D S3945 asnC; regulator for asnA, asnC and gidA K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D S0889 lrp; regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D S0398 ybaO; putative LRP-like transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D S2055 sdiA; transcriptional regulator of ftsQAZ gene cluster K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D S2090 rcsA; positive regulator for ctr capsule biosynthesis, positive transcription factor K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor D S1107 csgD; probable csgAB operon transcriptional regulatory protein K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein D S4226 yhiF; hypothetical protein K21901 dctR; LuxR family transcriptional regulator, dicarboxylate transport regulator D S4669 bglJ; 2-component transcriptional regulator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides D S4221 yhiE; hypothetical protein K21907 gadE; LuxR family transcriptional regulator, glutamate-dependent acid resistance regulator C MarR family D S1691 marR; multiple antibiotic resistance protein, repressor of mar operon K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR D S1801 slyA; transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D S2898 emrR; regulator of plasmid mcrB operon (microcin B17 synthesis) K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D S2956 putative transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility C MerR family D S0439 ybbI; putative transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D S3590 soxR; redox-sensing activator of soxS K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D S0621 fur; negative regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D S3572 yjbK; putative regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D S3646 iclR; repressor of aceBA operon K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D S0452 ybbU; putative regulator K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons D S1514 putative regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D S4151 yiaJ; putative regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor C CRP/FNR family D S4387 crp; cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D S1434 fnr; global transcription regulator Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D S2377 yeiL; putative transcriptional regulator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D S2750 hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D S4601 yjeB; hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D S4232 arsR; transcriptional repressor of chromosomal ars operon K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D S2708 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D S0810 putative toxin K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D S2628 yfeT; hypothetical protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D S1929 yebK; hypothetical protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D S3689 birA; biotin-[acetyl CoA carboxylase] holoenzyme synthetase and biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D S3516 fis; site-specific DNA inversion stimulation factor; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D S4696 trpR; regulator for trp operon and aroH; trp aporepressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D S3446 nlp; regulatory factor of maltose metabolism K07724 ner; Ner family transcriptional regulator D S2952 putative DNA-binding protein K07724 ner; Ner family transcriptional regulator D S0066 yabN; putative transport protein K11925 sgrR; SgrR family transcriptional regulator D S4693 nadR; probable nadAB transcriptional regulator K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D S1386 ycjC; hypothetical protein K14056 puuR; HTH-type transcriptional regulator, repressor for puuD D S3329 ygjM; hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D S2923 ygaA; putative 2-component transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator D S2940 fhlA; formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons K15836 fhlA; formate hydrogenlyase transcriptional activator D S0551 modE; molybdate uptake regulatory protein K02019 modE; molybdate transport system regulatory protein D S4180 yiaG; hypothetical protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family D S4264 yhhG; hypothetical protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D S3731 metJ; repressor of all met genes but metF K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D S1670 relB; negative regulator of translation K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family D S4040 bglG; positive regulation of bgl operon K03488 licT; beta-glucoside operon transcriptional antiterminator D S3774 frvR; putative frv operon regulatory protein K18531 frvR; putative frv operon regulatory protein C Others D S2292 yohL; hypothetical protein K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D S0386 bolA; possible regulator of murein genes K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D S3834 rfaH; transcriptional activator K05785 rfaH; transcriptional antiterminator RfaH D S3492 argR; repressor of arg regulon K03402 argR; transcriptional regulator of arginine metabolism D S0628 nagC; transcriptional repressor of nag (N-acetylglucosamine) operon K02565 nagC; N-acetylglucosamine repressor D S1747 mlc; putative NAGC-like transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene D S4133 mtlR; repressor for mtl K02562 mtlR; mannitol operon repressor D S1412 tyrR; regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D S1390 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D S1393 pspC; putative regulator of phage shock response K03973 pspC; phage shock protein C D S1708 ydeW; putative sorC family transcriptional regulator K11531 lsrR; lsr operon transcriptional repressor D S1288 putative sensor-type regulator K05880 dhaR; transcriptional activator for dhaKLM operon D S0534 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D S2722 hypothetical bacteriophage protein K07733 alpA; prophage regulatory protein D S3190 hypothetical protein K07733 alpA; prophage regulatory protein D S3143 yqgE; hypothetical protein K07735 algH; putative transcriptional regulator D S0033 caiF; transcriptional regulator of cai operon K08277 caiF; transcriptional activator CaiF D S0140 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D S0358 ybaD; hypothetical protein K07738 nrdR; transcriptional repressor NrdR D S0309 crl; transcriptional regulator of cryptic csgA gene for curli surface fibers K11926 crl; sigma factor-binding protein Crl D S4320 rtcR; putative 2-component regulator K14414 rtcR; transcriptional regulatory protein RtcR D S0919 putative regulator of cell division encoded by prophage CP-933O K22302 dicC; transcriptional repressor of cell division inhibition gene dicB D S0080 yabB; hypothetical protein K03925 mraZ; transcriptional regulator MraZ D S3268 hypothetical protein K07471 ygiV; probable transcriptional regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 5, 2024 #
Classification taken and modified from TRANSFAC 7.0