+D GENES KO #

  KEGG Orthology (KO) - Shewanella halifaxensis

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:shl00010] D Shal_1121 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shal_0784 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shal_0847 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shal_3151 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Shal_2076 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shal_2078 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shal_0846 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Shal_0043 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shal_1222 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shal_1947 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shal_1705 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shal_0476 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shal_0477 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_0641 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Shal_3111 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_4033 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_2250 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shal_1196 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_0083 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_4036 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_0328 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Shal_1697 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shal_0664 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Shal_2238 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shal_2435 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D Shal_4178 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Shal_2308 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] C 00020 Citrate cycle (TCA cycle) [PATH:shl00020] D Shal_2494 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D Shal_0482 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Shal_1718 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Shal_3069 Isocitrate dehydrogenase (NAD(+)) K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D Shal_2489 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Shal_2488 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_2486 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shal_2487 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shal_2491 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Shal_2490 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Shal_2493 Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Shal_2492 Succinate dehydrogenase hydrophobic membrane anchor K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Shal_3897 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shal_3896 succinate dehydrogenase and fumarate reductase iron-sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shal_3899 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shal_3898 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shal_0776 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D Shal_2256 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Shal_0903 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shal_4178 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Shal_0476 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shal_0477 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shal_0641 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:shl00030] D Shal_1121 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shal_1949 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Shal_1950 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D Shal_2899 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Shal_4076 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Shal_0844 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Shal_1122 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Shal_0870 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D Shal_1124 Phosphoketolase K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22] D Shal_3136 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Shal_0582 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Shal_3134 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Shal_2238 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shal_3215 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Shal_1951 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D Shal_1952 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Shal_0847 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shal_0784 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] C 00040 Pentose and glucuronate interconversions [PATH:shl00040] D Shal_0411 putative carbohydrate hydrolase (N-terminus) K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7] D Shal_0412 D-galactarate dehydratase/Altronate hydrolase domain protein K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7] D Shal_1501 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shal_1530 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shal_4076 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Shal_2009 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D Shal_2013 YdaE K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15] D Shal_2008 Alcohol dehydrogenase GroES domain protein K05351 E1.1.1.9; D-xylulose reductase [EC:1.1.1.9] D Shal_2557 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Shal_0261 FGGY-family pentulose kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47] C 00051 Fructose and mannose metabolism [PATH:shl00051] D Shal_1524 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Shal_2810 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Shal_3989 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D Shal_3317 Mandelate racemase/muconate lactonizing protein K12661 LRA3; L-rhamnonate dehydratase [EC:4.2.1.90] D Shal_0784 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shal_0847 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shal_3151 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Shal_0481 HAD-superfamily hydrolase, subfamily IA, variant 3 K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] C 00052 Galactose metabolism [PATH:shl00052] D Shal_0664 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Shal_0665 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shal_2630 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Shal_1529 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shal_1530 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shal_2238 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shal_0667 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Shal_2427 glycoside hydrolase family 4 K07406 melA; alpha-galactosidase [EC:3.2.1.22] C 00053 Ascorbate and aldarate metabolism [PATH:shl00053] D Shal_1501 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shal_1502 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Shal_2557 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Shal_0409 Mandelate racemase/muconate lactonizing protein K18983 gci; D-galactarolactone cycloisomerase [EC:5.5.1.27] C 00500 Starch and sucrose metabolism [PATH:shl00500] D Shal_1530 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shal_1522 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Shal_2308 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shal_2238 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shal_1121 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shal_1524 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:shl00520] D Shal_3745 glycoside hydrolase family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D Shal_1609 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Shal_1148 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Shal_2308 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shal_1150 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D Shal_0813 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D Shal_1149 ATPase BadF/BadG/BcrA/BcrD type K18676 gspK; glucosamine kinase [EC:2.7.1.8] D Shal_1524 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Shal_4285 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shal_3152 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Shal_4288 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Shal_1043 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D Shal_2037 HAD-superfamily hydrolase, subfamily IA, variant 1 K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105] D Shal_0919 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D Shal_0920 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D Shal_3692 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Shal_4151 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Shal_1393 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Shal_2238 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shal_1530 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shal_1501 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shal_0665 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shal_2630 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Shal_1529 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shal_1502 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Shal_1121 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shal_2810 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Shal_3989 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] C 00620 Pyruvate metabolism [PATH:shl00620] D Shal_1697 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shal_0641 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Shal_0476 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shal_0477 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_2592 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Shal_2250 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shal_2089 Acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D Shal_1196 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_0083 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_4036 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_3111 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_4033 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_2595 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shal_2738 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shal_2596 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shal_2737 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shal_1947 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shal_0595 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Shal_1611 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Shal_0328 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D Shal_2741 coenzyme A transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D Shal_0795 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D Shal_3084 FAD linked oxidase domain protein K18930 dld; D-lactate dehydrogenase D Shal_1924 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D Shal_1871 Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Shal_2627 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Shal_3267 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Shal_3859 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Shal_1236 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Shal_1237 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shal_1235 sodium pump decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D Shal_0903 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shal_2256 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D Shal_3897 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shal_3896 succinate dehydrogenase and fumarate reductase iron-sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shal_3899 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shal_3898 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shal_0776 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D Shal_4095 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Shal_4178 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D Shal_1705 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shal_2251 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Shal_1352 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_0438 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:shl00630] D Shal_2253 isocitrate lyase and phosphorylmutase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D Shal_1697 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shal_2251 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Shal_1352 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D Shal_0903 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shal_2494 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D Shal_0482 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2740 MaoC domain protein dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D Shal_0729 Catalase K03781 katE; catalase [EC:1.11.1.6] D Shal_4193 Catalase K03781 katE; catalase [EC:1.11.1.6] D Shal_0923 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Shal_1769 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Shal_4075 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Shal_3939 Serine--pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shal_0353 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_0995 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_3875 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_1203 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shal_3373 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Shal_3375 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_3374 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Shal_1782 6-phosphogluconate dehydrogenase NAD-binding K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D Shal_2800 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Shal_1952 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D Shal_0493 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0105 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0109 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0113 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0807 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0662 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0114 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shal_0106 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shal_0494 formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shal_0110 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shal_0115 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_4023 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_1410 formate dehydrogenase, putative K00127 fdoI; formate dehydrogenase subunit gamma D Shal_0107 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_0111 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_4014 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_0495 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_2986 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] C 00640 Propanoate metabolism [PATH:shl00640] D Shal_1697 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shal_2900 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Shal_2741 coenzyme A transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] D Shal_2595 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shal_2738 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shal_2596 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shal_2737 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shal_2234 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Shal_2233 Transketolase central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Shal_2232 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_2592 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Shal_0329 Quinone oxidoreductase putative YhdH/YhfP K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shal_0595 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Shal_1002 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shal_0986 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shal_2487 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shal_2486 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shal_2877 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shal_0985 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shal_1962 2-methylcitrate synthase/citrate synthase II K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D Shal_1963 2-methylisocitrate dehydratase, Fe/S-dependent K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117] D Shal_1964 putative AcnD-accessory protein PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-] D Shal_0482 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D Shal_1961 methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] D Shal_0346 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:shl00650] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_2763 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shal_2739 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shal_2250 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shal_2089 Acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D Shal_2740 MaoC domain protein dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D Shal_1987 poly(R)-hydroxyalkanoic acid synthase, class I K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D Shal_1237 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shal_2126 coenzyme A transferase K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D Shal_0169 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Shal_2491 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Shal_2490 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Shal_2493 Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Shal_2492 Succinate dehydrogenase hydrophobic membrane anchor K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Shal_3897 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shal_3896 succinate dehydrogenase and fumarate reductase iron-sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shal_3899 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shal_3898 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shal_0776 flavocytochrome c K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4] D Shal_3043 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D Shal_1002 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shal_1001 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Shal_2592 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Shal_0641 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Shal_2907 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Shal_2908 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Shal_2909 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Shal_2387 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_3944 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_0842 thiamine pyrophosphate protein central region K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_2388 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shal_3943 amino acid-binding ACT domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shal_2103 short-chain dehydrogenase/reductase SDR K18009 budC; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:shl00660] D Shal_2387 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_3944 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_0842 thiamine pyrophosphate protein central region K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_2388 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shal_3943 amino acid-binding ACT domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shal_2487 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D Shal_2486 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Shal_0440 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Shal_0441 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Shal_0439 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:shl00562] D Shal_1568 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Shal_2877 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shal_0985 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shal_3151 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:shl00190] D Shal_1191 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Shal_4038 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Shal_3500 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Shal_2491 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Shal_2490 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Shal_2493 Succinate dehydrogenase cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Shal_2492 Succinate dehydrogenase hydrophobic membrane anchor K00242 sdhD; succinate dehydrogenase membrane anchor subunit D Shal_3897 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Shal_3896 succinate dehydrogenase and fumarate reductase iron-sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Shal_3899 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shal_3898 fumarate reductase respiratory complex transmembrane subunit K25996 frdC; succinate dehydrogenase subunit C D Shal_3630 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Shal_3629 Cytochrome b/b6 domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Shal_3628 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Shal_0251 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shal_0255 cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Shal_0257 Cytochrome c oxidase subunit I type K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Shal_0258 Cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Shal_0256 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Shal_0252 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shal_2197 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Shal_2198 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Shal_2199 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Shal_2200 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Shal_1381 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shal_1164 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shal_1382 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Shal_1383 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D Shal_4296 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Shal_4294 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Shal_4295 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Shal_4297 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Shal_4293 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Shal_4300 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Shal_4298 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Shal_4299 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Shal_2151 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:shl00680] D Shal_3474 S-(hydroxymethyl)glutathione synthase K03396 gfa; S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22] D Shal_4035 S-(hydroxymethyl)glutathione synthase K03396 gfa; S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22] D Shal_3111 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_4033 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_4032 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D Shal_0493 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0105 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0109 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0113 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0807 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0662 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Shal_0114 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shal_0106 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shal_0494 formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shal_0110 4Fe-4S ferredoxin iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Shal_0115 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_4023 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_1410 formate dehydrogenase, putative K00127 fdoI; formate dehydrogenase subunit gamma D Shal_0107 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_0111 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_4014 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_0495 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D Shal_1203 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shal_3939 Serine--pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shal_0923 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Shal_1222 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shal_4095 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D Shal_0903 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shal_0847 fructose-bisphosphate aldolase, class II, Calvin cycle subtype K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Shal_0784 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shal_3415 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shal_3414 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D Shal_3416 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shal_2153 molybdopterin oxidoreductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shal_3299 ferredoxin-dependent glutamate synthase K22083 mgsC; methylamine---glutamate N-methyltransferase subunit C [EC:2.1.1.21] D Shal_1492 4Fe-4S ferredoxin iron-sulfur binding domain protein K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D Shal_2595 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shal_2738 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shal_2596 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shal_2737 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shal_1697 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shal_1705 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Shal_0043 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shal_0723 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shal_2041 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Shal_3131 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:shl00910] D Shal_3439 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Shal_0173 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Shal_0176 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Shal_0185 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Shal_0177 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Shal_3440 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Shal_0178 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Shal_3441 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Shal_0180 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Shal_3443 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Shal_0715 periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D Shal_0712 Nitrate reductase cytochrome c-type subunit (NapB) K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D Shal_0886 multihaem cytochrome K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Shal_2918 Nitrite reductase (cytochrome; ammonia-forming) K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Shal_2920 Nitrite reductase (cytochrome; ammonia-forming) K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Shal_1262 Nitrite reductase (cytochrome; ammonia-forming) K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Shal_3554 Nitric-oxide reductase K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D Shal_1103 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Shal_1091 conserved hypothetical protein K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6] D Shal_2959 Nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D Shal_2357 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shal_0590 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Shal_0353 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_0995 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_3875 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_1061 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Shal_1060 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shal_0640 oxidoreductase FAD/NAD(P)-binding domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shal_0688 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Shal_0639 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Shal_2313 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:shl00920] D Shal_3532 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shal_3533 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shal_1637 conserved hypothetical Ap4A phosphorylase II K00988 APA1_2; sulfate adenylyltransferase (ADP) / ATP adenylyltransferase [EC:2.7.7.5 2.7.7.53] D Shal_3530 Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Shal_1523 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shal_4161 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shal_3541 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Shal_3543 sulfite reductase (NADPH) flavoprotein, alpha chain K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D Shal_3542 sulfite reductase (NADPH) hemoprotein, beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D Shal_3271 Nitrate reductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Shal_3127 molybdopterin oxidoreductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Shal_4217 Rhodanese domain protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D Shal_1570 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Shal_3743 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shal_1937 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shal_2581 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shal_2884 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Shal_0622 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Shal_2926 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D Shal_0404 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D Shal_0406 Dimethylsulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D Shal_2925 Dimethylsulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D Shal_0405 putative anaerobic dimethyl sulfoxide reductase, subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D Shal_2434 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D Shal_2054 acyl-CoA dehydrogenase domain protein K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:shl00061] D Shal_0595 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D Shal_1778 acyl carrier protein K02078 acpP; acyl carrier protein D Shal_0380 phosphopantetheine-binding K02078 acpP; acyl carrier protein D Shal_0381 acyl carrier protein, putative K02078 acpP; acyl carrier protein D Shal_1776 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Shal_1775 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shal_2559 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shal_2654 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shal_0369 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shal_0366 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shal_1779 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shal_1777 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2747 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_0367 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2872 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_1401 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2119 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2139 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2348 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Shal_2970 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Shal_2763 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shal_2739 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shal_1832 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_3395 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0063 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0387 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:shl00071] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2671 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shal_0015 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_1890 Protein of unknown function DUF1974 K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Shal_1266 Protein of unknown function DUF1974 K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Shal_1946 Protein of unknown function DUF1974 K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D Shal_1832 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_3395 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0063 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0387 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_3111 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_4033 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_2250 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shal_1196 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_0083 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_4036 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis [PATH:shl00121] D Shal_0591 Choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:shl00561] D Shal_2800 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Shal_0444 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Shal_0271 Glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Shal_1774 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Shal_1010 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Shal_3798 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Shal_1740 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Shal_3716 PGAP1 family protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D Shal_2427 glycoside hydrolase family 4 K07406 melA; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:shl00564] D Shal_0046 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Shal_3329 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Shal_0805 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Shal_0271 Glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Shal_1010 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Shal_3798 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Shal_1505 glycerol-3-phosphate cytidylyltransferase K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] D Shal_1740 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Shal_3535 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shal_2004 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shal_4228 alpha/beta hydrolase fold K01048 pldB; lysophospholipase [EC:3.1.1.5] D Shal_3646 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Shal_2976 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Shal_2058 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shal_3643 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Shal_2031 phosphatidylserine decarboxylase-related K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Shal_2344 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Shal_1211 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D Shal_3935 phosphoesterase PA-phosphatase related K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] D Shal_2224 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D Shal_1545 phospholipase D/Transphosphatidylase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:shl00565] D Shal_3330 Alkylglycerone-phosphate synthase K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26] D Shal_3535 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shal_2004 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:shl00600] D Shal_0667 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Shal_2427 glycoside hydrolase family 4 K07406 melA; alpha-galactosidase [EC:3.2.1.22] D Shal_1148 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism [PATH:shl00590] D Shal_3535 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shal_2004 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shal_3055 Peptidase M1 membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] C 00591 Linoleic acid metabolism D Shal_3535 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shal_2004 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:shl00592] D Shal_3535 Phospholipase A(1) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shal_2004 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D Shal_2671 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shal_0015 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:shl01040] D Shal_4156 Stearoyl-CoA 9-desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Shal_2605 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shal_3285 lipolytic protein G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shal_2896 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:shl00230] D Shal_3656 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Shal_4162 NUDIX hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D Shal_3134 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Shal_2238 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shal_3215 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Shal_2637 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Shal_0487 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Shal_1679 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Shal_0924 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D Shal_1380 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D Shal_1680 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Shal_1245 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Shal_1816 Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Shal_1713 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Shal_0488 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Shal_1589 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Shal_1362 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Shal_2226 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shal_2390 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shal_3368 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shal_1227 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Shal_1675 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Shal_4163 HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D Shal_1600 Inosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73] D Shal_2543 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shal_3869 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shal_3133 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shal_0726 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shal_3756 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Shal_3247 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Shal_0745 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Shal_1376 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Shal_1580 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shal_0822 protein of unknown function DUF84 K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D Shal_1167 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Shal_1847 Xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D Shal_1377 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shal_4281 guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7] D Shal_0659 Guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D Shal_3314 Guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D Shal_0392 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Shal_2036 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Shal_2035 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Shal_2692 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Shal_2248 putative deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D Shal_2247 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D Shal_0390 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Shal_3891 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Shal_1219 (p)ppGpp synthetase I, SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D Shal_1065 putative adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Shal_3916 putative adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D Shal_0990 putative adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D Shal_3680 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shal_3477 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D Shal_3065 conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Shal_2836 adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D Shal_3765 metallophosphoesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Shal_1598 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Shal_1220 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shal_3654 Calcineurin phosphoesterase domain protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D Shal_1637 conserved hypothetical Ap4A phosphorylase II K00988 APA1_2; sulfate adenylyltransferase (ADP) / ATP adenylyltransferase [EC:2.7.7.5 2.7.7.53] D Shal_0913 bis(5'nucleosyl)-tetraphosphatase, ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D Shal_3530 Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D Shal_3532 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shal_3533 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shal_3467 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Shal_3466 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Shal_3465 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D Shal_0688 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Shal_0639 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:shl00240] D Shal_3161 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Shal_3162 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Shal_3052 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shal_0683 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shal_0654 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shal_3053 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Shal_0682 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Shal_0655 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Shal_3291 dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Shal_2356 Dihydroorotate oxidase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D Shal_0423 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Shal_2049 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Shal_2979 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Shal_1580 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shal_1220 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shal_3836 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Shal_2697 protein of unknown function DUF45 K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D Shal_1221 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Shal_2044 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Shal_2379 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D Shal_1362 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Shal_2226 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shal_2390 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shal_3368 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shal_1227 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Shal_1675 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Shal_2433 HAD-superfamily hydrolase, subfamily IA, variant 1 K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D Shal_0535 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D Shal_3756 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D Shal_1681 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Shal_3765 metallophosphoesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D Shal_3041 PfkB domain protein K16328 psuK; pseudouridine kinase [EC:2.7.1.83] D Shal_3040 Indigoidine synthase A family protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D Shal_2421 Inosine/uridine-preferring nucleoside hydrolase K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-] D Shal_3065 conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D Shal_1783 Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Shal_2160 Amidohydrolase 3 K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Shal_2692 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Shal_2036 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Shal_2035 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D Shal_2247 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D Shal_3351 CMP/dCMP deaminase zinc-binding K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Shal_2376 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Shal_0427 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Shal_3135 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D Shal_2941 Thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D Shal_1070 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D Shal_0638 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:shl00250] D Shal_2042 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shal_1076 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Shal_2028 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Shal_1845 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shal_1673 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Shal_2246 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shal_3939 Serine--pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shal_2219 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Shal_4090 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Shal_4089 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Shal_3680 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Shal_1713 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Shal_3052 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shal_0683 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shal_0654 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Shal_3053 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Shal_0682 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Shal_0655 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D Shal_3043 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D Shal_1002 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shal_1001 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Shal_1061 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Shal_1060 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shal_0640 oxidoreductase FAD/NAD(P)-binding domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Shal_2357 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shal_0590 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Shal_3585 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Shal_0353 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_0995 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_3875 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_3161 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Shal_3162 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Shal_2709 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shal_1157 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shal_4285 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shal_2637 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:shl00260] D Shal_0788 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shal_1114 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shal_0623 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shal_2643 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shal_1115 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D Shal_1116 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Shal_1187 Threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Shal_1203 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shal_3939 Serine--pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shal_0923 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Shal_2800 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D Shal_0043 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Shal_0723 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shal_2041 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Shal_3131 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D Shal_4215 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Shal_4216 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D Shal_3373 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Shal_3375 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_3374 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Shal_0690 Non-specific serine/threonine protein kinase K00613 GATM; glycine amidinotransferase [EC:2.1.4.1] D Shal_2058 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Shal_1057 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D Shal_1058 aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D Shal_1608 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shal_0824 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shal_3940 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Shal_3561 D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D Shal_0991 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D Shal_2833 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D Shal_1653 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Shal_1654 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:shl00270] D Shal_1570 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Shal_3743 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shal_1937 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shal_2581 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Shal_1732 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Shal_3462 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Shal_0843 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shal_0610 dTDP-4-dehydrorhamnose reductase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shal_1804 Adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Shal_3575 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Shal_0417 purine or other phosphorylase family 1 K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Shal_1632 purine or other phosphorylase family 1 K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Shal_1051 Adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D Shal_3247 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Shal_0067 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D Shal_2212 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shal_2751 Cystathionine gamma-synthase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Shal_2366 putative GAF sensor protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D Shal_4064 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shal_3188 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Shal_2401 conserved hypothetical protein K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D Shal_0788 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shal_1114 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shal_0623 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shal_2643 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shal_2884 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D Shal_0622 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Shal_0737 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D Shal_3942 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_3964 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_1241 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Shal_3297 Glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shal_0700 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shal_1991 Glutathione synthase K21456 GSS; glutathione synthase [EC:6.3.2.3] D Shal_2042 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shal_0991 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D Shal_2833 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D Shal_0903 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Shal_0079 1-aminocyclopropane-1-carboxylate deaminase K17950 cuyA; L-cysteate sulfo-lyase [EC:4.4.1.25] D Shal_1608 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shal_0824 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Shal_0723 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shal_2041 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:shl00280] D Shal_3942 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_3964 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_1711 Glu/Leu/Phe/Val dehydrogenase dimerisation region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Shal_2234 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Shal_2233 Transketolase central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Shal_2232 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_2902 acyl-CoA dehydrogenase domain protein K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shal_2671 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shal_0015 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shal_2873 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D Shal_2877 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shal_0985 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shal_0986 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shal_1002 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shal_2905 Carbamoyl-phosphate synthase L chain ATP-binding K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D Shal_2903 Propionyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D Shal_2904 Enoyl-CoA hydratase/isomerase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D Shal_2907 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Shal_2908 3-oxoacid CoA-transferase, A subunit K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D Shal_2909 3-oxoacid CoA-transferase, B subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:shl00290] D Shal_3940 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Shal_0440 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Shal_0441 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Shal_0439 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Shal_2387 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_3944 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_0842 thiamine pyrophosphate protein central region K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_2388 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shal_3943 amino acid-binding ACT domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shal_3945 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Shal_3941 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Shal_3942 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_3964 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_1711 Glu/Leu/Phe/Val dehydrogenase dimerisation region K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D Shal_2705 aminotransferase class I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D Shal_2246 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shal_0438 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:shl00300] D Shal_0788 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shal_1114 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shal_0623 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shal_2643 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shal_2321 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Shal_3163 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Shal_2984 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D Shal_3610 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Shal_2310 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shal_3912 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Shal_3913 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Shal_0450 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Shal_0451 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:shl00310] D Shal_2488 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_0991 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D Shal_2833 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D Shal_1002 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shal_1001 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D Shal_2954 conserved hypothetical protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] C 00220 Arginine biosynthesis [PATH:shl00220] D Shal_4091 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Shal_0687 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Shal_4090 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Shal_4089 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Shal_3467 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Shal_3466 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Shal_3465 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D Shal_0689 Arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D Shal_2709 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shal_1157 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shal_0353 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_0995 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_3875 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_2357 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shal_0590 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D Shal_0688 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Shal_0639 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D Shal_2042 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shal_2246 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shal_0432 amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D Shal_4092 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Shal_4093 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Shal_3610 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Shal_4094 acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:shl00330] D Shal_0690 Non-specific serine/threonine protein kinase K00613 GATM; glycine amidinotransferase [EC:2.1.4.1] D Shal_2160 Amidohydrolase 3 K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D Shal_1803 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Shal_1805 putative agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Shal_3575 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Shal_1804 Adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Shal_1088 GCN5-related N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D Shal_2134 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Shal_3609 Arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D Shal_1604 Succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D Shal_3608 aldehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D Shal_2235 Succinylglutamate desuccinylase/aspartoacylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D Shal_1000 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Shal_0992 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Shal_1700 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D Shal_0987 aldehyde dehydrogenase K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D Shal_1171 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Shal_3585 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Shal_3170 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shal_3169 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Shal_0361 Prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Shal_2042 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shal_2554 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4] D Shal_3252 Ornithine cyclodeaminase K19742 lhpI; 1-pyrroline-2-carboxylate reductase [NAD(P)H] [EC:1.5.1.49] C 00340 Histidine metabolism [PATH:shl00340] D Shal_1824 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Shal_1817 phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D Shal_1819 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Shal_1820 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Shal_1818 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Shal_1821 histidinol-phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D Shal_3744 aminotransferase class I and II K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_1822 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_1823 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Shal_0375 Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shal_3448 phenylalanine/histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shal_0074 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shal_3952 phenylalanine/histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D Shal_0073 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D Shal_0071 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D Shal_3878 Arginase/agmatinase/formiminoglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8] D Shal_2847 flavocytochrome c K17363 urdA; urocanate reductase [EC:1.3.99.33] C 00350 Tyrosine metabolism [PATH:shl00350] D Shal_2042 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shal_3744 aminotransferase class I and II K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_1822 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_2212 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shal_2410 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shal_2415 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shal_2409 homogentisate 12-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Shal_1535 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Shal_1534 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D Shal_3111 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_4033 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_2250 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Shal_1196 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_0083 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_4036 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_1672 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D Shal_1001 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:shl00360] D Shal_1531 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Shal_2142 Enoyl-CoA hydratase/isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_2042 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shal_3744 aminotransferase class I and II K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_1822 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_2212 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shal_0934 GCN5-related N-acetyltransferase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D Shal_2410 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shal_2415 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shal_0867 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D Shal_1888 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D Shal_2134 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:shl00380] D Shal_2488 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2959 Nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D Shal_2134 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Shal_0729 Catalase K03781 katE; catalase [EC:1.11.1.6] D Shal_4193 Catalase K03781 katE; catalase [EC:1.11.1.6] D Shal_1888 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:shl00400] D Shal_1101 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shal_0892 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shal_1703 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shal_4081 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Shal_0596 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Shal_0035 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Shal_4082 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Shal_2043 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Shal_2660 Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Shal_1658 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Shal_1657 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Shal_1656 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Shal_1655 Indole-3-glycerol-phosphate synthase, Phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D Shal_1653 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Shal_1654 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Shal_1102 chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D Shal_1107 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Shal_2042 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shal_3744 aminotransferase class I and II K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_1822 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_2212 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shal_1531 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:shl00410] D Shal_3043 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D Shal_1002 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shal_0749 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Shal_0638 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Shal_0986 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shal_2877 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D Shal_0985 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:shl00430] D Shal_3043 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D Shal_2420 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shal_2219 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Shal_2357 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Shal_2596 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shal_2737 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Shal_2595 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Shal_2738 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:shl00450] D Shal_0622 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D Shal_1732 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Shal_3462 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Shal_2751 Cystathionine gamma-synthase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D Shal_0819 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D Shal_2024 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Shal_0648 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K12527 ygfK; putative selenate reductase [EC:1.97.1.9] D Shal_0657 Xanthine dehydrogenase K12528 xdhD; putative selenate reductase molybdopterin-binding subunit D Shal_0656 molybdopterin dehydrogenase FAD-binding K12529 ygfM; putative selenate reductase FAD-binding subunit D Shal_3532 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shal_3533 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shal_4157 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Shal_0497 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Shal_2381 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:shl00460] D Shal_1522 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] D Shal_2959 Nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D Shal_2420 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shal_2028 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D Shal_1845 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shal_1203 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:shl00470] D Shal_3669 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Shal_1854 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shal_0991 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D Shal_2833 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10] D Shal_2709 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shal_1157 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shal_4153 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Shal_0453 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Shal_3561 D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D Shal_3912 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Shal_3913 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Shal_2554 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4] D Shal_2556 proline racemase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D Shal_2553 FAD dependent oxidoreductase K21060 lhpB; D-hydroxyproline dehydrogenase [EC:1.5.99.-] D Shal_2555 dihydrodipicolinate synthase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D Shal_2557 aldehyde dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D Shal_0867 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:shl00480] D Shal_2420 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shal_1241 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D Shal_3297 Glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shal_0700 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D Shal_1991 Glutathione synthase K21456 GSS; glutathione synthase [EC:6.3.2.3] D Shal_3903 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shal_2845 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shal_0962 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shal_0756 PepB aminopeptidase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D Shal_0877 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shal_2363 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shal_3175 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shal_2429 dipeptidase, putative K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shal_3262 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shal_0195 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shal_1728 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shal_0190 glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D Shal_1718 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Shal_2899 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Shal_1949 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Shal_3051 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D Shal_3575 Spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:shl00511] D Shal_0667 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D Shal_1148 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00540 Lipopolysaccharide biosynthesis [PATH:shl00540] D Shal_2969 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Shal_0460 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Shal_2971 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Shal_2773 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Shal_2968 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Shal_2505 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Shal_3700 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Shal_3206 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Shal_3701 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Shal_2316 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Shal_4213 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Shal_3551 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Shal_4017 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Shal_1815 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D Shal_1278 conserved hypothetical protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-] D Shal_2864 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shal_1956 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shal_4212 lipopolysaccharide kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D Shal_3550 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Shal_2547 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Shal_2293 glycosyl transferase family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] C 00542 O-Antigen repeat unit biosynthesis [PATH:shl00542] D Shal_1498 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shal_1499 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:shl00541] D Shal_1530 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Shal_1529 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Shal_1501 UDP-glucose/GDP-mannose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Shal_1502 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Shal_1487 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shal_1486 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shal_1503 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shal_1489 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shal_1520 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shal_1488 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shal_2810 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8] D Shal_4288 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Shal_1393 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] C 00550 Peptidoglycan biosynthesis [PATH:shl00550] D Shal_3692 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Shal_4151 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Shal_0456 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Shal_0453 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Shal_0450 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Shal_1854 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shal_0451 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Shal_2977 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Shal_1013 putative undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shal_0452 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Shal_0455 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Shal_4088 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shal_0761 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Shal_3234 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Shal_0449 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shal_3238 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Shal_2055 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:shl00552] D Shal_1013 putative undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shal_1498 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shal_1499 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:shl00543] D Shal_1498 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shal_1499 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shal_1570 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:shl00730] D Shal_1900 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Shal_1901 phosphomethylpyrimidine kinase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3] D Shal_1902 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D Shal_1572 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shal_3075 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shal_1905 thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Shal_1411 biotin and thiamin synthesis associated K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Shal_3080 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Shal_1400 Transketolase central region K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Shal_1904 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D Shal_1210 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Shal_3642 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Shal_1267 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Shal_0699 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shal_1039 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shal_1598 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:shl00740] D Shal_2689 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Shal_1207 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Shal_1205 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Shal_3909 HAD-superfamily hydrolase, subfamily IA, variant 1 K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D Shal_4187 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D Shal_1208 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Shal_2017 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Shal_1206 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Shal_1130 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Shal_0584 oxidoreductase FAD/NAD(P)-binding domain protein K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41] D Shal_1282 nitroreductase K19285 nfrA1; FMN reductase (NADPH) [EC:1.5.1.38] D Shal_0741 cob(II)yrinic acid a,c-diamide reductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D Shal_3656 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Shal_1716 NUDIX hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-] D Shal_0744 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:shl00750] D Shal_1806 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D Shal_0356 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D Shal_0845 D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D Shal_2644 D-isomer specific 2-hydroxyacid dehydrogenase catalytic region K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D Shal_2041 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D Shal_0916 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Shal_1086 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Shal_1116 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:shl00760] D Shal_1076 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Shal_2231 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Shal_0472 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Shal_2543 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shal_3869 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shal_3133 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shal_0726 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D Shal_1362 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Shal_2226 5'-Nucleotidase domain protein K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shal_2390 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shal_3368 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D Shal_1227 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Shal_1675 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D Shal_3231 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Shal_1220 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shal_2517 NAD+ synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D Shal_4097 competence/damage-inducible protein CinA K03742 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Shal_2481 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Shal_3082 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D Shal_3545 oxidoreductase K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Shal_3544 NAD(P)(+) transhydrogenase (AB-specific) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D Shal_3546 NAD(P)(+) transhydrogenase (AB-specific) K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D Shal_0169 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1] D Shal_1001 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:shl00770] D Shal_2387 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_3944 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_0842 thiamine pyrophosphate protein central region K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Shal_2388 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Shal_3943 amino acid-binding ACT domain protein K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D Shal_3945 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Shal_3941 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Shal_0750 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Shal_3200 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Shal_0749 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Shal_4149 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D Shal_0428 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Shal_1220 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Shal_0135 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Shal_0467 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Shal_1087 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Shal_3005 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D Shal_1551 protein of unknown function DUF479 K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D Shal_3942 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_3964 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_0638 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Shal_2801 Pyridoxal-dependent decarboxylase K24264 panP; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:shl00780] D Shal_2475 Methyltransferase type 11 K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D Shal_2654 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shal_0369 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shal_0366 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shal_1779 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shal_1777 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2747 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_0367 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2872 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_1401 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2119 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2139 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2970 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Shal_0244 bioH protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D Shal_2476 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Shal_2478 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Shal_2474 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Shal_1413 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6] D Shal_2477 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Shal_4150 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:shl00785] D Shal_3240 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Shal_3241 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_0476 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D Shal_0477 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D Shal_2489 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D Shal_2488 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D Shal_2234 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D Shal_2233 Transketolase central region K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D Shal_2232 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D Shal_3373 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D Shal_3375 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shal_3374 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:shl00790] D Shal_0424 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Shal_0699 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shal_1039 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shal_0874 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Shal_1011 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Shal_1012 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Shal_0751 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Shal_3153 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Shal_0910 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Shal_2640 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Shal_2689 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Shal_1207 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Shal_3613 glutamine amidotransferase of anthranilate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D Shal_2257 para-aminobenzoate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D Shal_2378 Aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D Shal_2601 dihydroneopterin aldolase K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7] D Shal_1532 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Shal_1531 phenylalanine-4-hydroxylase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D Shal_2019 short-chain dehydrogenase/reductase SDR K03793 PTR1; pteridine reductase [EC:1.5.1.33] D Shal_1936 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Shal_1935 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Shal_2999 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Shal_2159 beta-lactamase domain protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Shal_0144 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shal_0122 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shal_0124 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Shal_0126 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Shal_0055 molybdenum cofactor synthesis domain K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shal_0123 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shal_0145 molybdopterin-guanine dinucleotide biosynthesis protein B K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Shal_4190 molybdenum cofactor synthesis domain K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Shal_0647 hypotehtical YgfJ K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Shal_0146 molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:shl00670] D Shal_0910 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D Shal_3806 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Shal_2770 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Shal_1203 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Shal_1679 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Shal_0488 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Shal_0026 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Shal_3375 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Shal_3462 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Shal_1070 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D Shal_2986 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D Shal_0624 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Shal_3386 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:shl00860] D Shal_1539 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shal_3212 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Shal_1021 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Shal_2957 aminotransferase class-III K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Shal_3888 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Shal_3917 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Shal_3918 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D Shal_0484 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D Shal_0034 Coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D Shal_4226 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D Shal_0022 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D Shal_3525 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D Shal_0020 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D Shal_1175 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Shal_1599 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D Shal_3919 protein of unknown function DUF513 hemX K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Shal_3534 uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D Shal_1560 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D Shal_0251 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shal_0252 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shal_3453 cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Shal_3454 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Shal_1050 cobalamin biosynthesis protein CbiB K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Shal_3455 cobalbumin biosynthesis protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Shal_3456 cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Shal_3458 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase subtype K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Shal_3461 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D Shal_3397 pyridoxamine 5'-phosphate oxidase-related FMN-binding K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D Shal_3178 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] D Shal_3179 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:shl00130] D Shal_0095 Chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D Shal_0544 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Shal_0585 UbiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Shal_0744 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Shal_3376 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D Shal_2038 ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D Shal_3377 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D Shal_3879 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Shal_3220 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D Shal_0155 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D Shal_0297 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D Shal_0296 alpha/beta hydrolase fold K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D Shal_0295 Mandelate racemase/muconate lactonizing protein K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D Shal_0294 O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D Shal_4273 naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D Shal_0727 thioesterase superfamily protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D Shal_2898 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Shal_2410 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shal_2415 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:shl00900] D Shal_3080 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Shal_1400 Transketolase central region K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Shal_2975 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Shal_1224 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Shal_3214 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Shal_1225 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Shal_1367 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Shal_1134 hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_0744 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Shal_3079 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Shal_0904 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Shal_2977 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:shl00903] D Shal_2863 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation [PATH:shl00907] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shal_2907 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D Shal_2671 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shal_0015 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Shal_0844 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:shl00523] D Shal_1487 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shal_1486 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shal_1503 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shal_1489 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shal_1520 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shal_1488 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides D Shal_0155 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] C 01055 Biosynthesis of vancomycin group antibiotics D Shal_1486 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:shl00946] D Shal_1522 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D Shal_3015 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] C 00332 Carbapenem biosynthesis [PATH:shl00332] D Shal_3170 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Shal_3169 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:shl00261] D Shal_3532 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D Shal_3533 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D Shal_0788 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Shal_1114 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D Shal_0623 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D Shal_2643 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Shal_2321 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Shal_3163 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:shl00521] D Shal_2238 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Shal_1568 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Shal_1487 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shal_1486 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Shal_1503 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shal_1489 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Shal_1520 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Shal_1488 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:shl00525] D Shal_1487 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Shal_1486 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:shl00401] D Shal_1102 chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D Shal_2042 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shal_3744 aminotransferase class I and II K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_1822 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_2212 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis D Shal_1146 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9] C 00405 Phenazine biosynthesis D Shal_1658 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Shal_1657 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Shal_1776 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Shal_1777 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2747 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_0367 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2872 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_1401 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2119 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2139 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Shal_1778 acyl carrier protein K02078 acpP; acyl carrier protein D Shal_0380 phosphopantetheine-binding K02078 acpP; acyl carrier protein D Shal_0381 acyl carrier protein, putative K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:shl00999] D Shal_0843 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shal_0610 dTDP-4-dehydrorhamnose reductase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Shal_0035 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Shal_1522 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:shl00362] D Shal_2955 3-oxoacid CoA-transferase, A subunit K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] D Shal_2956 3-oxoacid CoA-transferase, B subunit K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] D Shal_2671 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shal_0015 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shal_2958 beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D Shal_2090 4-oxalocrotonate decarboxylase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132] D Shal_2088 pyruvate carboxyltransferase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43] D Shal_2089 Acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_1237 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:shl00627] D Shal_2134 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Shal_2959 Nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D Shal_1611 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Shal_0744 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation [PATH:shl00364] D Shal_0796 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:shl00625] D Shal_1196 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_0083 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_4036 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_3111 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_4033 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_2250 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:shl00361] D Shal_0796 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:shl00623] D Shal_0796 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:shl00622] D Shal_2090 4-oxalocrotonate decarboxylase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132] D Shal_2088 pyruvate carboxyltransferase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43] D Shal_2089 Acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] C 00633 Nitrotoluene degradation [PATH:shl00633] D Shal_2104 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D Shal_0956 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D Shal_2671 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Shal_0015 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:shl00643] D Shal_2409 homogentisate 12-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D Shal_1535 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D Shal_1534 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D Shal_2134 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Shal_2959 Nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D Shal_2126 coenzyme A transferase K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D Shal_2741 coenzyme A transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1] C 00791 Atrazine degradation D Shal_3467 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D Shal_3466 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D Shal_3465 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:shl00930] D Shal_2863 Alpha/beta hydrolase fold-3 domain protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] D Shal_2108 Enoyl-CoA hydratase/isomerase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D Shal_0016 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D Shal_2670 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation [PATH:shl00621] D Shal_2090 4-oxalocrotonate decarboxylase K18364 bphH; 2-oxopent-4-enoate/cis-2-oxohex-4-enoate hydratase [EC:4.2.1.80 4.2.1.132] D Shal_2088 pyruvate carboxyltransferase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43] D Shal_2089 Acetaldehyde dehydrogenase K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87] C 00626 Naphthalene degradation [PATH:shl00626] D Shal_1196 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_0083 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_4036 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Shal_3111 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_4033 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D Shal_2250 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation [PATH:shl00984] D Shal_2097 fumarate reductase/succinate dehydrogenase flavoprotein domain protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4] D Shal_2093 Rieske (2Fe-2S) domain protein K15982 kshA; 3-ketosteroid 9alpha-monooxygenase subunit A [EC:1.14.15.30] D Shal_2102 Oxidoreductase FAD-binding domain protein K15983 kshB; 3-ketosteroid 9alpha-monooxygenase subunit B [EC:1.14.15.30] D Shal_2101 Acyl-CoA dehydrogenase type 2 domain K16047 hsaA; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase [EC:1.14.14.12] D Shal_2091 flavin reductase domain protein FMN-binding K16048 hsaB; 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase reductase component [EC:1.5.1.-] D Shal_2124 Glyoxalase/bleomycin resistance protein/dioxygenase K16049 hsaC; 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione 4,5-dioxygenase [EC:1.13.11.25] D Shal_2118 alpha/beta hydrolase fold K16050 hsaD; 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase [EC:3.7.1.17] D Shal_2098 AMP-dependent synthetase and ligase K18687 fadD3; HIP---CoA ligase [EC:6.2.1.41] D Shal_2144 short-chain dehydrogenase/reductase SDR K05296 E1.1.1.51; 3(or 17)beta-hydroxysteroid dehydrogenase [EC:1.1.1.51] D Shal_2145 nuclear transport factor 2 K01822 E5.3.3.1; steroid Delta-isomerase [EC:5.3.3.1] C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:shl03020] D Shal_4141 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Shal_4140 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Shal_4110 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Shal_0391 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:shl03010] D Shal_2045 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Shal_2981 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Shal_4128 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Shal_4111 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Shal_4117 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Shal_3675 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Shal_4138 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Shal_4120 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Shal_3682 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Shal_4135 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Shal_4112 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Shal_4139 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Shal_4113 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Shal_4121 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Shal_3144 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Shal_1097 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Shal_4125 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Shal_3673 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Shal_4130 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Shal_1128 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Shal_1007 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Shal_4144 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Shal_4131 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Shal_4134 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Shal_4133 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Shal_4122 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Shal_4119 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Shal_4142 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Shal_3672 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Shal_4143 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Shal_4145 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Shal_3683 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Shal_4124 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Shal_4115 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Shal_4127 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Shal_4109 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Shal_4118 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Shal_1100 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Shal_2023 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Shal_0905 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Shal_4129 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Shal_4132 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Shal_4123 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Shal_2340 ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D Shal_0906 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Shal_0430 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Shal_4126 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Shal_4116 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Shal_3861 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Shal_1773 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Shal_0431 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Shal_4314 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Shal_2022 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Shal_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0102 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0013 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0144 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0125 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0155 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0158 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0146 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0136 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0122 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0152 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0157 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0135 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0101 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0143 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0008 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0145 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0014 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0015 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0142 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0100 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0134 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0151 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0156 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0121 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0132 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0009 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:shl00970] D Shal_R0007 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0153 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0123 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0047 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0055 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0140 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0105 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0032 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0027 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0066 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0072 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0070 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0071 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0067 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0069 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0068 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0004 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0064 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0063 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0065 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0150 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0089 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shal_R0096 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shal_R0094 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shal_R0109 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shal_R0113 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shal_R0111 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shal_R0116 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shal_R0048 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0054 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0053 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0052 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0049 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0088 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0128 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0127 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0131 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0130 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0129 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0097 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0147 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0104 tRNA-His K14226 tRNA-His; tRNA His D Shal_R0139 tRNA-His K14226 tRNA-His; tRNA His D Shal_R0124 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shal_R0006 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shal_R0154 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shal_R0110 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0112 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0114 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0117 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0095 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0093 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0108 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0062 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0060 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0059 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0057 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0061 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0058 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0115 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0118 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0017 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0107 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0078 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0080 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0082 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0083 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0084 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0085 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0086 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0087 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0019 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shal_R0126 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shal_R0021 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shal_R0023 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shal_R0106 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shal_R0137 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shal_R0138 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shal_R0099 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shal_R0098 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0011 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0012 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0091 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0024 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0092 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0133 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0018 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0149 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0022 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0119 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Shal_R0120 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Shal_R0073 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0075 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0148 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0074 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0076 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0077 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0036 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0043 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0039 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0044 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0045 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0040 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0037 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0042 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0041 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0046 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0038 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0079 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0081 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0010 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Shal_1539 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shal_2775 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Shal_1233 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shal_1918 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shal_2260 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shal_0007 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Shal_0006 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Shal_2020 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shal_2213 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shal_0497 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Shal_2771 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shal_2381 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shal_0026 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Shal_0953 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shal_3228 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shal_1131 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shal_0810 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Shal_3864 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shal_2960 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shal_1368 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shal_1812 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shal_1813 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shal_1045 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shal_4074 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:shl03060] D Shal_4114 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Shal_4147 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Shal_3150 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Shal_1556 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shal_3158 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shal_3157 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Shal_1557 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Shal_1555 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Shal_2701 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_4311 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_0463 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shal_0045 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Shal_1096 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shal_R0103 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Shal_0287 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shal_3882 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Shal_3883 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Shal_3884 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Shal_4184 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shal_1082 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shal_1132 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:shl04122] D Shal_1572 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shal_0012 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shal_2327 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shal_2080 DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D Shal_2081 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D Shal_2082 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D Shal_2079 DsrC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D Shal_1715 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Shal_0126 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D Shal_0144 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shal_0122 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Shal_0125 molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein D Shal_4191 molybdopterin synthase sulfurylase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D Shal_0124 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Shal_0055 molybdenum cofactor synthesis domain K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shal_0123 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D Shal_3075 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shal_1903 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D Shal_1902 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:shl03018] D Shal_1067 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Shal_1767 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Shal_3892 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D Shal_1222 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shal_3142 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Shal_3591 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_1543 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_0955 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_0971 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_3093 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_3017 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_3116 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_3678 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Shal_0628 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Shal_0436 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shal_2222 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shal_3894 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Shal_3167 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shal_3776 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shal_3634 RNA chaperone Hfq K03666 hfq; host factor-I protein D Shal_0752 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:shl03030] D Shal_1875 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2302 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2563 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2966 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shal_1590 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shal_2375 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shal_3230 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shal_0954 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shal_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shal_3670 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Shal_1005 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Shal_0633 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shal_1874 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shal_2843 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shal_2967 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Shal_4220 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shal_2575 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:shl03410] D Shal_1925 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Shal_3389 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Shal_1154 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Shal_0140 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Shal_1541 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Shal_0008 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Shal_2624 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Shal_1118 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Shal_4220 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shal_0862 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shal_2575 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:shl03420] D Shal_1613 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Shal_0631 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Shal_1933 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Shal_2003 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Shal_2345 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Shal_0543 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shal_4220 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shal_2575 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shal_0402 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] C 03430 Mismatch repair [PATH:shl03430] D Shal_1231 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Shal_3636 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Shal_1066 DNA mismatch repair endonuclease mutH K03573 mutH; DNA mismatch repair protein MutH D Shal_0543 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shal_1784 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Shal_1375 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Shal_3078 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Shal_0862 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shal_0633 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shal_2966 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shal_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shal_1590 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shal_3230 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shal_2375 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shal_1875 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2302 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2563 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_0954 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shal_2575 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shal_4079 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:shl03440] D Shal_0862 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shal_0633 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shal_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Shal_1085 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Shal_1595 recombination protein RecR K06187 recR; recombination protein RecR D Shal_1232 recA protein K03553 recA; recombination protein RecA D Shal_4220 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shal_1921 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Shal_1922 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Shal_1920 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Shal_0385 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shal_1856 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Shal_1857 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Shal_1855 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Shal_2966 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shal_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shal_1590 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shal_3230 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shal_2375 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shal_1875 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2302 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2563 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_0954 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shal_3863 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Shal_3674 single-strand binding protein/Primosomal replication protein n K02686 priB; primosomal replication protein N D Shal_2732 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:shl03250] D Shal_3195 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shal_2354 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus D Shal_2664 peptidase M16 domain protein K01408 IDE; insulysin [EC:3.4.24.56] C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:shl02010] D Shal_3369 ABC transporter, periplasmic substrate-binding protein, putative K05772 tupA; tungstate transport system substrate-binding protein D Shal_0149 extracellular solute-binding protein family 1 K05772 tupA; tungstate transport system substrate-binding protein D Shal_0148 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Shal_0147 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Shal_0127 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shal_3711 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shal_0128 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Shal_0129 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Shal_0897 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Shal_0898 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Shal_0899 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Shal_0996 extracellular solute-binding protein family 1 K11073 potF; putrescine transport system substrate-binding protein D Shal_0999 Ornithine carbamoyltransferase K11074 potI; putrescine transport system permease protein D Shal_0998 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein D Shal_0997 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D Shal_4042 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Shal_4043 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Shal_4044 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Shal_3695 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Shal_3696 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Shal_3697 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Shal_3694 SpoIIAA family protein K07122 mlaB; phospholipid transport system transporter-binding protein D Shal_3698 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Shal_0778 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Shal_0780 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Shal_0781 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Shal_0779 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein D Shal_0581 Monosaccharide-transporting ATPase K10439 rbsB; ribose transport system substrate-binding protein D Shal_0580 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein D Shal_0579 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Shal_0578 RbsD or FucU transport K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D Shal_2012 periplasmic binding protein/LacI transcriptional regulator K17205 xltC; putative xylitol transport system substrate-binding protein D Shal_2011 Monosaccharide-transporting ATPase K17206 xltB; putative xylitol transport system permease protein D Shal_2010 ABC transporter related K17207 xltA; putative xylitol transport system ATP-binding protein D Shal_1852 ABC sugar (glycerol) transporter extracellular solute-binding protein, family 1 K17321 glpV; glycerol transport system substrate-binding protein D Shal_3057 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shal_4276 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shal_4277 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Shal_2829 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein D Shal_4278 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Shal_2828 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Shal_4279 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shal_2827 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shal_2530 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Shal_2528 binding-protein-dependent transport systems inner membrane component K02042 phnE; phosphonate transport system permease protein D Shal_2529 ABC transporter related K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Shal_3484 extracellular solute-binding protein family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Shal_3485 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D Shal_3486 ABC transporter related K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Shal_2758 extracellular solute-binding protein family 5 K19226 sapA; cationic peptide transport system substrate-binding protein D Shal_2759 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein D Shal_2760 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein D Shal_2761 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein D Shal_2762 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein D Shal_3452 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D Shal_0158 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Shal_0060 ABC-2 type transporter K09696 natB; sodium transport system permease protein D Shal_0061 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Shal_1615 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shal_1617 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shal_1616 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Shal_4107 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D D Shal_4106 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Shal_4105 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Shal_4104 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Shal_0963 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Shal_0964 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Shal_3704 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Shal_0576 ABC-2 type transporter K19341 nosY; Cu-processing system permease protein D Shal_0560 copper ABC transporter, permease protein K19341 nosY; Cu-processing system permease protein D Shal_0559 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein D Shal_0575 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein D Shal_0289 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Shal_0288 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Shal_2506 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Shal_0894 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Shal_1540 ABC transporter related K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Shal_3923 ABC transporter transmembrane region type 1 K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shal_3588 ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D Shal_3589 ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD C 02060 Phosphotransferase system (PTS) [PATH:shl02060] D Shal_2307 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Shal_2306 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Shal_2308 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shal_1068 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Shal_3709 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr D Shal_3707 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:shl03070] D Shal_3657 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shal_4174 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Shal_4175 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D Shal_4172 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Shal_4171 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Shal_4170 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Shal_4169 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Shal_4168 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Shal_4167 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Shal_4166 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D Shal_4165 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Shal_4173 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Shal_1556 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shal_3158 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shal_3157 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Shal_1557 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Shal_4147 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Shal_3150 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Shal_4114 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Shal_1555 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Shal_2701 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_4311 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_0463 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shal_0287 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shal_0045 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Shal_1096 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shal_3882 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Shal_3883 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Shal_3884 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:shl02020] D Shal_3058 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Shal_3059 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Shal_0699 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shal_1039 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shal_0874 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1] D Shal_3057 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shal_4276 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shal_2532 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_3026 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_2531 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shal_3025 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shal_0239 histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Shal_0240 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Shal_2065 porin Gram-negative type K09476 ompF; outer membrane pore protein F D Shal_0337 histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shal_0338 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shal_2220 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shal_0855 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Shal_0279 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Shal_0278 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Shal_4260 flagellin domain protein K02406 fliC; flagellin D Shal_1439 flagellin domain protein K02406 fliC; flagellin D Shal_1438 flagellin domain protein K02406 fliC; flagellin D Shal_1465 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Shal_4266 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Shal_4267 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_3077 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_3417 Hpt sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Shal_3419 two component transcriptional regulator, winged helix family K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR D Shal_3414 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D Shal_3415 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shal_3416 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shal_0786 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D Shal_0252 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shal_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Shal_0742 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D Shal_3267 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Shal_0061 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Shal_0060 ABC-2 type transporter K09696 natB; sodium transport system permease protein D Shal_0175 histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D Shal_0174 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Shal_0885 histidine kinase K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D Shal_0884 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D Shal_0177 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Shal_3440 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Shal_0178 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Shal_3441 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Shal_0180 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Shal_3443 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Shal_0179 nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D Shal_3442 nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D Shal_0492 molybdopterin oxidoreductase Fe4S4 region K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3] D Shal_2949 lipoprotein, putative K06080 rcsF; RcsF protein D Shal_1217 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Shal_2346 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Shal_1234 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Shal_2040 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Shal_2881 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein D Shal_2882 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Shal_2285 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D Shal_2282 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Shal_2281 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Shal_2276 Flp pilus assembly protein ATPase CpaE-like protein K02282 cpaE; pilus assembly protein CpaE D Shal_2275 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Shal_2274 type II secretion system protein K12510 tadB; tight adherence protein B D Shal_2273 type II secretion system protein K12511 tadC; tight adherence protein C D Shal_3301 protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Shal_2983 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Shal_1143 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Shal_0342 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Shal_0341 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Shal_0353 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_0995 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_3875 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_0774 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_3705 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Shal_0471 prepilin peptidase dependent protein D K02650 pilA; type IV pilus assembly protein PilA D Shal_2263 Ni/Fe-hydrogenase, b-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit D Shal_1426 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shal_0952 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_0059 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_1385 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_0912 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_1374 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_1811 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_2304 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_3251 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_3586 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Shal_3587 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_4016 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_2625 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_2632 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Shal_3953 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shal_2428 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shal_1472 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shal_1473 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shal_1468 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shal_1466 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shal_1469 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shal_1425 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_2398 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_1546 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_3128 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shal_0408 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shal_2062 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shal_3129 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shal_2061 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shal_1444 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shal_1445 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shal_1446 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shal_4237 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shal_1909 histidine kinase K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3] D Shal_4003 histidine kinase K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3] D Shal_3603 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Shal_2709 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shal_1157 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D Shal_0611 histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Shal_0612 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Shal_3630 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D Shal_3629 Cytochrome b/b6 domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Shal_3628 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D Shal_2197 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D Shal_2198 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D Shal_2199 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D Shal_2200 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D Shal_1381 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shal_1164 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Shal_1382 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Shal_1383 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D Shal_3657 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shal_1483 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shal_1512 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shal_1761 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D Shal_2562 histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D Shal_1423 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Shal_4245 conserved hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D Shal_3630 ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:shl02024] D Shal_3188 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D Shal_3634 RNA chaperone Hfq K03666 hfq; host factor-I protein D Shal_1658 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Shal_1657 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Shal_1101 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shal_0892 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shal_1703 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Shal_3043 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D Shal_2952 amino acid permease-associated region K20265 gadC; glutamate:GABA antiporter D Shal_2708 amino acid permease-associated region K20265 gadC; glutamate:GABA antiporter D Shal_3921 putative outer membrane adhesin like proteiin K20276 bapA; large repetitive protein D Shal_3922 putative outer membrane adhesin like proteiin K20276 bapA; large repetitive protein D Shal_1832 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_3395 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0063 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0387 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_3603 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Shal_2689 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D Shal_1205 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Shal_2168 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Shal_3728 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shal_3727 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shal_3726 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shal_3725 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shal_2701 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_4311 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_4147 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Shal_3150 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Shal_4114 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Shal_1555 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Shal_0463 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shal_0287 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shal_0045 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Shal_1096 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:shl02030] D Shal_0952 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_0059 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_1385 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_0912 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_1374 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_1811 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_2304 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_3251 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_3586 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Shal_3587 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_4016 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_2625 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_2632 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Shal_3953 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shal_2428 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shal_0581 Monosaccharide-transporting ATPase K10439 rbsB; ribose transport system substrate-binding protein D Shal_1468 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shal_1472 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shal_1473 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shal_1466 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shal_1467 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Shal_1469 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shal_1425 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_2398 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_1546 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_1426 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shal_4240 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shal_1449 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shal_1455 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Shal_4234 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shal_1456 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shal_4267 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_3077 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_4268 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shal_3076 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:shl02040] D Shal_4238 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Shal_1447 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Shal_4239 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shal_1448 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shal_4240 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shal_1449 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shal_4241 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shal_1450 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shal_4242 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shal_1451 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shal_1452 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Shal_1453 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Shal_4264 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Shal_0096 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shal_4265 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shal_1454 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shal_1455 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Shal_4234 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shal_1456 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shal_1457 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D Shal_4233 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shal_1458 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shal_4232 export protein FliQ family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Shal_1459 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Shal_1460 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shal_4231 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shal_1462 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shal_4229 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shal_1461 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shal_4230 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shal_1424 SAF domain protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D Shal_4246 SAF domain K02386 flgA; flagellar basal body P-ring formation protein FlgA D Shal_4247 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Shal_1427 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Shal_4248 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Shal_1428 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Shal_4249 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Shal_1429 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Shal_4250 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Shal_1430 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Shal_4251 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Shal_1431 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Shal_4252 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Shal_1432 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Shal_4253 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Shal_1433 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Shal_4254 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Shal_1434 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Shal_4255 conserved hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ D Shal_1435 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Shal_4256 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Shal_1436 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Shal_1437 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Shal_4257 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Shal_1421 protein of unknown function DUF400 K09860 flgP; outer membrane protein FlgP D Shal_3679 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX D Shal_1685 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shal_4236 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shal_4260 flagellin domain protein K02406 fliC; flagellin D Shal_1439 flagellin domain protein K02406 fliC; flagellin D Shal_1438 flagellin domain protein K02406 fliC; flagellin D Shal_4261 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Shal_1441 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Shal_4262 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Shal_1443 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Shal_4267 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_3077 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_4268 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shal_3076 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shal_1423 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Shal_4245 conserved hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM D Shal_1422 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Shal_4244 conserved hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN D Shal_1004 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Shal_1444 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shal_3705 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Shal_1446 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shal_4237 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shal_1465 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Shal_4266 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Shal_1222 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D Shal_3462 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:shl01501] D Shal_2065 porin Gram-negative type K09476 ompF; outer membrane pore protein F D Shal_3197 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Shal_1609 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Shal_2040 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D Shal_3931 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D Shal_0197 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2166 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1194 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2319 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_3932 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1199 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2888 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2495 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_0198 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2318 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_3933 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_2167 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2889 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_1195 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2168 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Shal_2911 efflux transporter, RND family, MFP subunit K18145 adeA; membrane fusion protein, multidrug efflux system D Shal_3657 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shal_4088 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shal_3234 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Shal_0449 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shal_2710 Beta-lactamase K17838 oxa; beta-lactamase class D [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:shl01502] D Shal_1854 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shal_3669 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Shal_0451 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Shal_0452 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Shal_0455 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:shl01503] D Shal_2532 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_3026 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_2531 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shal_3025 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shal_2864 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shal_1956 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shal_2758 extracellular solute-binding protein family 5 K19226 sapA; cationic peptide transport system substrate-binding protein D Shal_2759 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein D Shal_2760 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein D Shal_2761 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein D Shal_2762 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein D Shal_0337 histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shal_0338 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shal_2220 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shal_3637 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Shal_0491 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shal_3980 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shal_2571 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shal_3195 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shal_2354 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shal_0197 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2166 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1194 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2319 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_3932 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1199 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2888 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2495 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_0198 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2318 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_3933 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_2167 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2889 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_1195 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_3657 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shal_2969 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:shl01000] C 01001 Protein kinases [BR:shl01001] D Shal_3537 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Shal_0419 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Shal_1514 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Shal_3990 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Shal_3058 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Shal_2532 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_3026 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_0239 histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Shal_0337 histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shal_3417 Hpt sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Shal_0930 histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Shal_0175 histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D Shal_0885 histidine kinase K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D Shal_1217 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Shal_1564 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Shal_0342 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Shal_0151 histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Shal_1468 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shal_3128 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shal_0408 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shal_2062 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shal_1445 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shal_1909 histidine kinase K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3] D Shal_4003 histidine kinase K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3] D Shal_0611 histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Shal_2562 histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D Shal_1517 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] D Shal_0720 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] D Shal_3789 PAS/PAC sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:shl01009] D Shal_3481 conserved hypothetical protein K17550 PPP1R7; protein phosphatase 1 regulatory subunit 7 D Shal_1596 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Shal_2567 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] D Shal_3131 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:shl01002] D Shal_1132 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Shal_0468 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Shal_2284 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Shal_2264 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D Shal_1377 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Shal_0994 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Shal_0052 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D Shal_2637 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Shal_1061 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Shal_4285 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Shal_1673 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Shal_0591 Choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] D Shal_1737 peptidase C60 sortase A and B K07284 srtA; sortase A [EC:3.4.22.70] D Shal_1015 ErfK/YbiS/YcfS/YnhG family protein K19235 ybiS; L,D-transpeptidase YbiS D Shal_2342 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shal_2287 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shal_3055 Peptidase M1 membrane alanine aminopeptidase K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6] D Shal_0877 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shal_2363 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D Shal_0193 Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D Shal_2942 Peptidyl-dipeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Shal_2430 Peptidyl-dipeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5] D Shal_3483 peptidase M4 thermolysin K01400 nprE; bacillolysin [EC:3.4.24.28] D Shal_0094 peptidase M6 immune inhibitor A K09607 ina; immune inhibitor A [EC:3.4.24.-] D Shal_2840 Microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D Shal_0031 Microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D Shal_3310 Endothelin-converting enzyme 1 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D Shal_3258 Endothelin-converting enzyme 1 K07386 pepO; putative endopeptidase [EC:3.4.24.-] D Shal_2664 peptidase M16 domain protein K01408 IDE; insulysin [EC:3.4.24.56] D Shal_1240 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shal_0319 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shal_0320 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Shal_3903 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shal_2845 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shal_0962 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Shal_0756 PepB aminopeptidase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D Shal_2310 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Shal_3033 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Shal_3347 peptidase T-like protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Shal_3175 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shal_2429 dipeptidase, putative K01270 pepD; dipeptidase D [EC:3.4.13.-] D Shal_2702 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D Shal_2982 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Shal_0017 peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D Shal_0974 peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D Shal_2548 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Shal_0972 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Shal_0968 Carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D Shal_3154 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Shal_2473 HtpX domain protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Shal_2328 peptidase M48 Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D Shal_2974 putative membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Shal_0604 peptidase U6 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D Shal_0951 conserved hypothetical protein K21429 impA; immunomodulating metalloprotease D Shal_1355 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase D Shal_3686 protease Do K04772 degQ; serine protease DegQ [EC:3.4.21.-] D Shal_3687 periplasmic serine protease DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-] D Shal_1686 Prolyl oligopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] D Shal_0785 peptidase S9B dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Shal_4186 Oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D Shal_3238 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Shal_2055 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Shal_2768 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Shal_2766 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Shal_2347 conserved hypothetical ATP-dependent protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-] D Shal_0260 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D Shal_2170 peptidase S24 and S26 domain protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Shal_2184 peptidase S24 and S26 domain protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Shal_4184 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shal_1082 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Shal_0361 Prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D Shal_0041 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Shal_2364 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Shal_1249 peptidase S41 K08676 tri; tricorn protease [EC:3.4.21.-] D Shal_3015 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D Shal_2029 signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-] D Shal_2612 Peptidase S49 domain protein K04774 sohB; serine protease SohB [EC:3.4.21.-] D Shal_1667 peptidase S51 dipeptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21] D Shal_4218 Rhomboid family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D Shal_3866 20S proteasome A and B subunits K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Shal_1845 peptidase T2 asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Shal_2420 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Shal_3100 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Shal_2154 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Shal_0816 peptidase U32 K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase D Shal_3110 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D Shal_3109 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D Shal_3825 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein D Shal_3832 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein D Shal_1953 proteinase inhibitor I11 ecotin K08276 eco; ecotin D Shal_3631 HflC protein K04087 hflC; modulator of FtsH protease HflC D Shal_3632 HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:shl01003] D Shal_0761 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Shal_4088 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shal_1498 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shal_1499 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01005 Lipopolysaccharide biosynthesis proteins [BR:shl01005] D Shal_2969 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Shal_2968 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Shal_0460 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Shal_2971 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Shal_2773 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Shal_2505 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Shal_3551 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Shal_4017 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Shal_1815 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D Shal_1278 conserved hypothetical protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-] D Shal_4213 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Shal_2864 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shal_1956 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D Shal_4212 lipopolysaccharide kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166] D Shal_2314 DegT/DnrJ/EryC1/StrS aminotransferase K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109] D Shal_2315 iron-containing alcohol dehydrogenase K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48] D Shal_3206 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Shal_2316 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Shal_3701 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Shal_3700 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Shal_2293 glycosyl transferase family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Shal_4211 glycosyl transferase family 9 K12982 opsX; heptosyltransferase I [EC:2.4.-.-] D Shal_2547 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Shal_3550 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D Shal_1498 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Shal_1499 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:shl01011] D Shal_3692 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Shal_4151 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Shal_0456 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Shal_0453 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Shal_0450 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Shal_1854 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Shal_3669 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Shal_4153 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Shal_0452 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Shal_0455 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Shal_1013 putative undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Shal_1129 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Shal_4088 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Shal_0761 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D Shal_3234 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Shal_0449 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shal_3238 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Shal_2055 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D Shal_1015 ErfK/YbiS/YcfS/YnhG family protein K19235 ybiS; L,D-transpeptidase YbiS D Shal_2342 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shal_2287 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB D Shal_0604 peptidase U6 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D Shal_0052 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D Shal_2702 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D Shal_1737 peptidase C60 sortase A and B K07284 srtA; sortase A [EC:3.4.22.70] D Shal_1862 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Shal_1838 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Shal_3236 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Shal_2395 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Shal_0068 Lytic transglycosylase catalytic K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D Shal_2807 Lytic transglycosylase catalytic K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D Shal_1870 Lytic transglycosylase catalytic K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D Shal_1379 Lytic transglycosylase catalytic K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D Shal_2377 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Shal_3237 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Shal_3637 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Shal_0473 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] D Shal_1016 major outer membrane lipoprotein, putative K06078 lpp; murein lipoprotein C 01004 Lipid biosynthesis proteins [BR:shl01004] D Shal_1776 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Shal_1775 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shal_2559 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Shal_2654 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shal_0369 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D Shal_0366 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shal_1779 Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Shal_1777 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2747 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_0367 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2872 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_1401 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2119 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2139 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Shal_2348 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D Shal_2970 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Shal_2763 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shal_2739 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D Shal_2605 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shal_3285 lipolytic protein G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Shal_2896 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D Shal_4156 Stearoyl-CoA 9-desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D Shal_1697 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Shal_2900 AMP-dependent synthetase and ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D Shal_1832 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_3395 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0063 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0387 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_2121 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Shal_0271 Glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D Shal_1774 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Shal_1010 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Shal_3798 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:shl01008] C 01006 Prenyltransferases [BR:shl01006] D Shal_3079 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D Shal_0904 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Shal_2977 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Shal_3635 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Shal_2898 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Shal_0544 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Shal_0251 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:shl01007] D Shal_1539 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shal_2775 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Shal_0753 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Shal_1045 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shal_4074 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Shal_2771 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shal_3864 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shal_2381 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shal_1131 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shal_0953 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shal_3228 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shal_0810 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Shal_1918 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shal_2260 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shal_1368 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shal_0007 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Shal_0006 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Shal_2213 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shal_2960 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shal_2020 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shal_1233 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shal_1812 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shal_1813 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shal_2042 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D Shal_2705 aminotransferase class I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D Shal_2246 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D Shal_2212 Aspartate transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D Shal_3744 aminotransferase class I and II K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_1822 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Shal_4215 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D Shal_2476 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Shal_0986 aminotransferase class-III K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D Shal_3610 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Shal_1002 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Shal_2478 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Shal_1021 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Shal_2957 aminotransferase class-III K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Shal_3942 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_3964 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Shal_3939 Serine--pyruvate transaminase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] D Shal_2041 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:shl00194] D Shal_4293 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Shal_4294 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Shal_4295 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Shal_4296 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Shal_4297 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Shal_4298 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Shal_4299 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Shal_4300 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Shal_4301 ATP synthase I chain K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:shl03000] D Shal_4064 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shal_1407 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Shal_3742 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Shal_2635 transcriptional regulator, AraC family K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D Shal_3503 transcriptional regulator, AraC family K25495 nimR; AraC family transcriptional regulator, regulator of nimT D Shal_1541 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Shal_3073 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shal_0228 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shal_0413 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shal_1291 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shal_4073 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shal_2712 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Shal_3946 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D Shal_3283 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Shal_1073 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D Shal_1064 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Shal_2325 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Shal_1607 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D Shal_3563 transcriptional regulator, LysR family K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D Shal_1215 transcriptional regulator, LysR family K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator D Shal_2007 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Shal_1144 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Shal_0583 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Shal_0072 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Shal_1842 Fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D Shal_0475 regulatory protein GntR HTH K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Shal_1059 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D Shal_3931 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor D Shal_0426 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator D Shal_1973 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D Shal_1389 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Shal_4155 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D Shal_0790 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D Shal_2218 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shal_3936 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shal_0347 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shal_0863 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D Shal_2469 transcriptional regulator, LuxR family K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation D Shal_2868 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Shal_0489 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D Shal_2482 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Shal_3603 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Shal_2205 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Shal_1571 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Shal_0039 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D Shal_3823 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Shal_1127 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D Shal_0021 transcriptional regulator, ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D Shal_1948 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D Shal_4150 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Shal_3902 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Shal_1111 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D Shal_1444 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shal_3446 transcriptional regulator, Fis family K12146 hyfR; hydrogenase-4 transcriptional activator D Shal_3555 transcriptional regulator, NifA subfamily, Fis Family K12266 norR; anaerobic nitric oxide reductase transcription regulator D Shal_2789 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator D Shal_4180 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator D Shal_3729 putative transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D Shal_0621 methionine repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D Shal_3585 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Shal_3189 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Shal_4302 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Shal_1482 transcriptional acivator RfaH K05785 rfaH; transcriptional antiterminator RfaH D Shal_0902 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism D Shal_1533 transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D Shal_2322 amino acid-binding ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor D Shal_2757 transcriptional regulator, Fis family K03974 pspF; psp operon transcriptional activator D Shal_2754 phage shock protein C, PspC K03973 pspC; phage shock protein C D Shal_4049 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Shal_1177 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Shal_0754 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Shal_1204 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Shal_0446 MraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:shl03021] D Shal_4110 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Shal_4141 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Shal_4140 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Shal_0391 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Shal_1004 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Shal_1230 RNA polymerase, sigma 70 subunit, RpoD family K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D Shal_1077 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Shal_0290 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor D Shal_3705 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Shal_1465 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Shal_4266 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Shal_3791 SNF2-related protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D Shal_3148 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Shal_1209 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Shal_4146 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Shal_3627 Glutathione S-transferase domain K03599 sspA; stringent starvation protein A D Shal_3626 Stringent starvation protein B K03600 sspB; stringent starvation protein B D Shal_2653 anti-sigma-factor antagonist K17763 rsbR; rsbT co-antagonist protein RsbR D Shal_3987 response regulator receiver modulated serine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Shal_1515 response regulator receiver modulated serine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Shal_3988 anti-sigma-factor antagonist K04749 rsbV; anti-sigma B factor antagonist D Shal_1513 anti-sigma-factor antagonist K04749 rsbV; anti-sigma B factor antagonist D Shal_1514 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Shal_3990 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Shal_1078 anti sigma-E protein, RseA K03597 rseA; sigma-E factor negative regulatory protein RseA D Shal_1079 sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB D Shal_1080 positive regulator of sigma E, RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC D Shal_0754 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Shal_3160 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Shal_0241 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D Shal_3894 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Shal_2853 transcriptional antiterminator, Rof K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:shl03019] D Shal_1767 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Shal_3835 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Shal_1083 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Shal_3678 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Shal_3641 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Shal_3892 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D Shal_3591 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_1543 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_0955 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_0971 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_3093 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_3017 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_3116 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Shal_0628 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Shal_0436 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shal_2222 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shal_1222 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shal_3142 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Shal_3894 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Shal_3167 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shal_3776 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shal_3634 RNA chaperone Hfq K03666 hfq; host factor-I protein D Shal_0752 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Shal_1067 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D Shal_1234 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Shal_3858 diguanylate cyclase/phosphodiesterase K18765 csrD; RNase E specificity factor CsrD D Shal_1867 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A D Shal_3877 Ribonuclease E inhibitor RraA K02553 rraA; regulator of ribonuclease activity A D Shal_3797 protein of unknown function DUF1260 K09893 rraB; regulator of ribonuclease activity B D Shal_3708 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ D Shal_1851 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D Shal_0760 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:shl03011] D Shal_2045 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Shal_2981 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Shal_4128 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Shal_4111 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Shal_4117 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Shal_3675 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Shal_4138 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Shal_4120 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Shal_3682 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Shal_4135 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Shal_4112 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Shal_4139 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Shal_4113 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Shal_4121 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Shal_3144 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Shal_1097 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Shal_4125 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Shal_3673 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Shal_4130 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Shal_1128 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Shal_1007 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Shal_4144 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Shal_4131 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Shal_4134 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Shal_4133 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Shal_4122 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Shal_4119 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Shal_3672 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Shal_4143 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Shal_4145 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Shal_4142 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Shal_3683 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Shal_4124 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Shal_4115 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Shal_4127 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Shal_4109 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Shal_4118 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Shal_1100 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Shal_2023 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Shal_0905 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Shal_4129 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Shal_4132 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Shal_4123 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Shal_0906 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Shal_0430 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Shal_4126 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Shal_4116 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Shal_3861 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Shal_1773 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Shal_0431 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Shal_4314 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D Shal_2022 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Shal_2340 ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D Shal_R0015 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0142 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0100 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0134 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0151 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0156 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0121 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0132 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0009 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0102 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0013 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0144 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0125 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0155 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0158 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0146 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0136 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0122 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0152 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0157 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0135 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0101 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0143 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0008 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0145 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0014 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:shl03009] D Shal_1083 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Shal_3537 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D Shal_3641 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-] D Shal_1084 GTP-binding protein Era K03595 era; GTPase D Shal_0907 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] D Shal_0754 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Shal_3148 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Shal_1209 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Shal_4146 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Shal_0941 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shal_3290 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shal_3256 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shal_0733 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Shal_0915 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Shal_0025 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shal_3048 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shal_2295 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Shal_0698 rRNA (guanine-N(2)-)-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D Shal_0286 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Shal_0701 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Shal_2372 putative RNA methylase, NOL1/NOP2/sun family K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D Shal_4304 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Shal_0447 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Shal_4067 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Shal_0212 protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D Shal_1796 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D Shal_1014 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D Shal_3677 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Shal_3155 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Shal_0097 protein of unknown function DUF890 K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D Shal_3191 rRNA (guanine-N(2)-)-methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D Shal_3233 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Shal_2599 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Shal_3717 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Shal_0209 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D Shal_2353 putative RNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D Shal_3070 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D Shal_1364 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Shal_1218 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Shal_3719 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D Shal_0134 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_3107 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_2066 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_1550 Lysozyme K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_0791 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_2811 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_0608 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_2615 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Shal_1768 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Shal_3248 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Shal_1717 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Shal_0812 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D Shal_3242 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Shal_2072 alpha-L-glutamate ligase, RimK family K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D Shal_1098 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Shal_3326 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D Shal_3900 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Shal_2661 modification methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D Shal_2301 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D Shal_1767 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Shal_3835 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D Shal_1176 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Shal_3592 DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D Shal_0628 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Shal_0857 DEAD/DEAH box helicase domain protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D Shal_3642 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Shal_1267 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Shal_1371 small GTP-binding protein K03977 engA; GTPase D Shal_1763 GTP-binding protein HSR1-related K14540 rbgA; ribosome biogenesis GTPase A D Shal_3633 GTP1/OBG protein K03665 hflX; GTPase D Shal_1762 GTP1/OBG protein K03665 hflX; GTPase D Shal_0033 SUA5/yciO/yrdC domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Shal_0390 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Shal_3146 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Shal_3149 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Shal_2715 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein D Shal_3232 iojap-like protein K09710 ybeB; ribosome-associated protein D Shal_3224 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Shal_3156 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein D Shal_2690 conserved hypothetical protein K14762 yibL; ribosome-associated protein D Shal_3826 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein D Shal_2349 ribosome modulation factor K03812 rmf; ribosome modulation factor D Shal_3706 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor D Shal_1108 sigma 54 modulation protein/ribosomal protein S30EA K05809 raiA; ribosome-associated inhibitor A D Shal_1258 sigma 54 modulation protein/ribosomal protein S30EA K05809 raiA; ribosome-associated inhibitor A D Shal_4284 sigma 54 modulation protein/ribosomal protein S30EA K05809 raiA; ribosome-associated inhibitor A D Shal_3218 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Shal_1772 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:shl03016] D Shal_1017 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Shal_1539 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shal_2960 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Shal_1131 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Shal_3228 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shal_2381 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Shal_2775 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Shal_3864 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shal_0810 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Shal_1918 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shal_1233 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Shal_2260 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Shal_2020 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Shal_2213 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Shal_2771 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Shal_0953 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Shal_1368 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Shal_1812 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Shal_1813 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Shal_1045 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shal_4074 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Shal_0363 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Shal_2465 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Shal_1155 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D Shal_2950 protein of unknown function UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D Shal_3340 protein of unknown function UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D Shal_2641 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Shal_3145 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Shal_1226 tRNA pseudouridine synthase D TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D Shal_1572 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shal_0033 SUA5/yciO/yrdC domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Shal_3635 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Shal_4310 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Shal_4305 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Shal_4157 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Shal_1523 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shal_4161 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Shal_4313 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Shal_R0141 RNA component of RNaseP K01978 rnpB; M1 RNA D Shal_1684 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D Shal_0422 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Shal_1833 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D Shal_0759 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D Shal_1202 ABC transporter related K06020 ettA; energy-dependent translational throttle protein EttA D Shal_0007 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Shal_0006 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Shal_0753 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D Shal_0013 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D Shal_3487 YbaK/prolyl-tRNA synthetase associated region K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D Shal_1378 CMP/dCMP deaminase zinc-binding K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Shal_3664 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D Shal_3901 putative TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Shal_1583 dihydrouridine synthase DuS K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D Shal_3222 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Shal_1916 putative methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D Shal_1915 putative methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D Shal_2158 Methyltransferase type 12 K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D Shal_4154 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D Shal_1099 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Shal_0388 tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D Shal_1569 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D Shal_3035 protein of unknown function DUF633 K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D Shal_0321 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Shal_0858 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D Shal_2988 pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D Shal_0134 pseudouridine synthase Rlu family protein, TIGR01621 K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_3107 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_2066 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_1550 Lysozyme K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_0791 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_2811 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_0608 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D Shal_1715 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Shal_2207 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Shal_0012 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shal_2327 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D Shal_2080 DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B D Shal_2081 DsrE family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C D Shal_2082 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D Shal_2079 DsrC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D Shal_1574 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D Shal_0722 glycine cleavage T protein (aminomethyl transferase) K06980 ygfZ; tRNA-modifying protein YgfZ D Shal_2655 FAD dependent oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D Shal_1553 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Shal_1935 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Shal_1936 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Shal_2999 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D Shal_3275 putative iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D Shal_4158 Rhodanese domain protein K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D Shal_1554 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Shal_3075 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D Shal_2965 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Shal_1827 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Shal_1008 putative metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Shal_3638 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Shal_0678 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Shal_3678 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Shal_3142 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:shl03012] D Shal_1178 translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1 D Shal_3147 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Shal_2021 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Shal_3595 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Shal_2980 translation elongation factor Ts K02357 tsf; elongation factor Ts D Shal_4136 translation elongation factor Tu K02358 tuf; elongation factor Tu D Shal_4148 translation elongation factor Tu K02358 tuf; elongation factor Tu D Shal_4137 translation elongation factor G K02355 fusA; elongation factor G D Shal_3006 small GTP-binding protein K02355 fusA; elongation factor G D Shal_2479 translation elongation factor G K02355 fusA; elongation factor G D Shal_0498 selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D Shal_3211 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Shal_2978 ribosome recycling factor K02838 frr; ribosome recycling factor D Shal_3210 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Shal_3219 Aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Shal_1722 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Shal_2245 translation elongation factor P K02356 efp; elongation factor P D Shal_0809 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D Shal_3140 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D Shal_3512 protein of unknown function DUF331 K09890 arfA; alternative ribosome-rescue factor D Shal_0597 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:shl03110] D Shal_1721 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D Shal_3246 ATPase AAA-2 domain protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Shal_2767 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Shal_3867 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Shal_1596 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Shal_3167 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shal_1576 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D Shal_1729 conserved hypothetical protein K04046 yegD; hypothetical chaperone protein D Shal_3776 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shal_3166 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Shal_3767 chaperone DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ D Shal_0921 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein D Shal_1575 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Shal_4177 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Shal_3081 GrpE protein K03687 GRPE; molecular chaperone GrpE D Shal_2389 heat shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA D Shal_4176 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D Shal_3777 chaperonin Cpn10 K04078 groES; chaperonin GroES D Shal_3154 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Shal_4300 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Shal_2881 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein D Shal_0045 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Shal_0339 protein of unknown function Spy-related K06006 cpxP; periplasmic protein CpxP/Spy D Shal_3660 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A D Shal_2271 hydrogenase expression/synthesis HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D Shal_2267 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D Shal_3416 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shal_4013 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D Shal_0403 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D Shal_4022 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D Shal_2924 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D Shal_1148 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D Shal_3195 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shal_2354 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shal_2772 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Shal_3734 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Shal_2764 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Shal_0881 peptidylprolyl isomerase FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Shal_0569 peptidylprolyl isomerase FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Shal_0553 peptidylprolyl isomerase FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D Shal_3164 peptidylprolyl isomerase FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D Shal_1133 peptidylprolyl isomerase FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D Shal_1113 peptidylprolyl isomerase FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Shal_2394 peptidylprolyl isomerase FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D Shal_0181 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Shal_2717 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Shal_3294 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Shal_0917 SurA domain K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Shal_3893 thioredoxin K03671 TXN; thioredoxin D Shal_1597 Thioredoxin domain K05838 ybbN; putative thioredoxin D Shal_1695 glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1 D Shal_2335 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Shal_0491 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shal_3980 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shal_2571 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D Shal_1840 Disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D Shal_0861 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Shal_0670 Protein-disulfide reductase K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D Shal_4100 periplasmic protein thiol--disulphide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:shl04131] D Shal_1580 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Shal_0730 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Shal_2076 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shal_2078 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shal_1947 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shal_1596 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:shl04121] C 03051 Proteasome [BR:shl03051] D Shal_1596 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:shl03032] D Shal_1874 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shal_2843 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Shal_4064 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shal_0402 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Shal_3816 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shal_2765 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shal_1814 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Shal_2046 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Shal_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Shal_3670 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Shal_1005 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Shal_0633 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shal_2966 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shal_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shal_0954 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shal_3230 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shal_2375 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shal_1875 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2302 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2563 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_1590 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shal_2967 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Shal_4220 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shal_2575 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shal_4079 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Shal_2239 SeqA family protein K03645 seqA; negative modulator of initiation of replication D Shal_2332 Chromosomal replication initiator DnaA K10763 hda; DnaA-homolog protein D Shal_2039 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Shal_0004 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Shal_3650 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Shal_3652 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Shal_1605 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Shal_2636 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:shl03036] D Shal_4064 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shal_1083 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Shal_2946 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Shal_3816 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shal_2765 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shal_1814 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Shal_2046 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Shal_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Shal_4070 phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein D Shal_3902 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Shal_3634 RNA chaperone Hfq K03666 hfq; host factor-I protein D Shal_2325 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Shal_2218 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shal_3936 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shal_0347 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Shal_2511 37kDa nucleoid-associated protein K06899 ndpA; nucleoid-associated protein D Shal_2577 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D Shal_2617 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A D Shal_2616 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D Shal_0458 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Shal_1223 Septum formation initiator K05589 ftsB; cell division protein FtsB D Shal_0288 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Shal_0449 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Shal_2217 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Shal_0448 cell division protein FtsL K03586 ftsL; cell division protein FtsL D Shal_0457 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ D Shal_0454 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Shal_0289 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Shal_0459 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shal_2576 cell division protein ZipA K03528 zipA; cell division protein ZipA D Shal_3379 protein of unknown function DUF710 K09888 zapA; cell division protein ZapA D Shal_3978 protein of unknown function DUF904 K09892 zapB; cell division protein ZapB D Shal_2355 protein of unknown function DUF1379 K18657 zapC; cell division protein ZapC D Shal_0466 protein of unknown function DUF1342 K18778 zapD; cell division protein ZapD D Shal_3684 AFG1-family ATPase K06916 zapE; cell division protein ZapE D Shal_3637 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Shal_0197 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2166 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1194 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2319 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_3932 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1199 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2888 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2495 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1836 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Shal_1835 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Shal_1834 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Shal_0259 conserved hypothetical protein K13053 sulA; cell division inhibitor SulA D Shal_0426 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator D Shal_2239 SeqA family protein K03645 seqA; negative modulator of initiation of replication D Shal_3839 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Shal_3838 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Shal_3837 Rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D Shal_3235 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Shal_2856 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Shal_1357 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shal_1471 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Shal_4303 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Shal_4302 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Shal_3650 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Shal_3652 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Shal_4305 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Shal_4304 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Shal_3910 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D Shal_0860 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D Shal_2380 ATP-binding protein, Mrp/Nbp35 family K03593 mrp; ATP-binding protein involved in chromosome partitioning D Shal_4221 GTP-binding protein HSR1-related K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:shl03400] D Shal_1542 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Shal_3389 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Shal_1154 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Shal_1925 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Shal_0402 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Shal_0464 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Shal_2650 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Shal_0540 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Shal_0427 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Shal_1541 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D Shal_0008 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Shal_0140 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Shal_2624 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Shal_1118 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Shal_0862 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Shal_2575 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Shal_4220 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Shal_0631 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Shal_1933 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Shal_2003 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Shal_2345 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Shal_0543 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Shal_4141 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Shal_4140 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Shal_4110 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Shal_0391 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Shal_1613 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Shal_1231 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Shal_3636 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Shal_1066 DNA mismatch repair endonuclease mutH K03573 mutH; DNA mismatch repair protein MutH D Shal_1784 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D Shal_1375 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Shal_3078 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Shal_2966 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Shal_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Shal_0954 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D Shal_3230 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Shal_2375 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Shal_1875 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2302 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_2563 Exonuclease RNase T and DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Shal_1590 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Shal_0633 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shal_4079 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Shal_1856 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D Shal_1857 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D Shal_1855 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Shal_1232 recA protein K03553 recA; recombination protein RecA D Shal_1921 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Shal_1922 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Shal_1920 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Shal_3863 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Shal_3674 single-strand binding protein/Primosomal replication protein n K02686 priB; primosomal replication protein N D Shal_2732 primosomal replication protein N'', putative K04067 priC; primosomal replication protein N'' D Shal_0522 ATPase involved in DNA repair-like protein K03546 sbcC; DNA repair protein SbcC/Rad50 D Shal_2703 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 D Shal_2704 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D Shal_3120 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Shal_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Shal_0385 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Shal_1085 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Shal_1595 recombination protein RecR K06187 recR; recombination protein RecR D Shal_1212 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Shal_3061 putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC D Shal_1696 type III restriction protein res subunit K19789 radD; DNA repair protein RadD D Shal_2039 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Shal_0004 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Shal_1605 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Shal_3816 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shal_2765 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Shal_3902 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Shal_1814 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D Shal_2046 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D Shal_0436 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shal_2222 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Shal_2946 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS D Shal_3176 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Shal_2183 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D Shal_2169 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D Shal_2170 peptidase S24 and S26 domain protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Shal_2184 peptidase S24 and S26 domain protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Shal_0260 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D Shal_2729 DNA polymerase B region K02336 polB; DNA polymerase II [EC:2.7.7.7] D Shal_1663 regulatory protein RecX K03565 recX; regulatory protein D Shal_3930 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Shal_2001 UvrD/REP helicase K03658 helD; DNA helicase IV [EC:5.6.2.4] D Shal_2730 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Shal_1825 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Shal_2036 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Shal_2035 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:shl03029] D Shal_3629 Cytochrome b/b6 domain K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit D Shal_3147 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Shal_2021 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Shal_2980 translation elongation factor Ts K02357 tsf; elongation factor Ts D Shal_4136 translation elongation factor Tu K02358 tuf; elongation factor Tu D Shal_4148 translation elongation factor Tu K02358 tuf; elongation factor Tu D Shal_4137 translation elongation factor G K02355 fusA; elongation factor G D Shal_3006 small GTP-binding protein K02355 fusA; elongation factor G D Shal_2479 translation elongation factor G K02355 fusA; elongation factor G D Shal_1084 GTP-binding protein Era K03595 era; GTPase D Shal_1045 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Shal_3228 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Shal_1918 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Shal_3864 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Shal_0633 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Shal_2973 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Shal_3167 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shal_3081 GrpE protein K03687 GRPE; molecular chaperone GrpE D Shal_3776 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shal_3777 chaperonin Cpn10 K04078 groES; chaperonin GroES D Shal_3166 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Shal_3767 chaperone DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ D Shal_1572 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Shal_1575 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB D Shal_2335 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D Shal_2380 ATP-binding protein, Mrp/Nbp35 family K03593 mrp; ATP-binding protein involved in chromosome partitioning D Shal_0251 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Shal_0256 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D Shal_0252 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9] D Shal_2701 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_4311 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_0254 conserved hypothetical protein K14998 SURF1; surfeit locus 1 family protein D Shal_0250 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D Shal_1596 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:shl02000] D Shal_2506 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Shal_0894 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D Shal_1540 ABC transporter related K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D Shal_3396 lipid A ABC exporter family, fused ATPase and inner membrane subunits K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D Shal_3923 ABC transporter transmembrane region type 1 K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shal_3588 ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D Shal_3589 ABC transporter CydDC cysteine exporter (CydDC-E) family permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D Shal_2351 ABC transporter related K15738 uup; ABC transport system ATP-binding/permease protein D Shal_0127 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shal_3711 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Shal_0128 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Shal_0129 ABC transporter related K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Shal_3369 ABC transporter, periplasmic substrate-binding protein, putative K05772 tupA; tungstate transport system substrate-binding protein D Shal_0149 extracellular solute-binding protein family 1 K05772 tupA; tungstate transport system substrate-binding protein D Shal_0148 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Shal_0147 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Shal_0897 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Shal_0898 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Shal_0899 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Shal_0996 extracellular solute-binding protein family 1 K11073 potF; putrescine transport system substrate-binding protein D Shal_0999 Ornithine carbamoyltransferase K11074 potI; putrescine transport system permease protein D Shal_0998 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein D Shal_0997 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D Shal_4042 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Shal_4043 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Shal_4044 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Shal_0581 Monosaccharide-transporting ATPase K10439 rbsB; ribose transport system substrate-binding protein D Shal_0580 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein D Shal_0579 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Shal_2012 periplasmic binding protein/LacI transcriptional regulator K17205 xltC; putative xylitol transport system substrate-binding protein D Shal_2011 Monosaccharide-transporting ATPase K17206 xltB; putative xylitol transport system permease protein D Shal_2010 ABC transporter related K17207 xltA; putative xylitol transport system ATP-binding protein D Shal_1852 ABC sugar (glycerol) transporter extracellular solute-binding protein, family 1 K17321 glpV; glycerol transport system substrate-binding protein D Shal_0778 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Shal_0780 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D Shal_0781 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D Shal_0779 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein D Shal_3032 conserved hypothetical protein K02069 STAR2; UDP-glucose/iron transport system permease protein D Shal_3696 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Shal_3697 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Shal_3698 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Shal_3695 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Shal_3694 SpoIIAA family protein K07122 mlaB; phospholipid transport system transporter-binding protein D Shal_2424 putative simple sugar transport system substrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D Shal_0265 putative periplasmic binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D Shal_0263 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein D Shal_0262 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein D Shal_2426 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein D Shal_2425 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D Shal_0264 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D Shal_3057 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shal_4276 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Shal_4277 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Shal_2829 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein D Shal_4278 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Shal_2828 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Shal_4279 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shal_2827 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Shal_2530 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Shal_2528 binding-protein-dependent transport systems inner membrane component K02042 phnE; phosphonate transport system permease protein D Shal_2529 ABC transporter related K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Shal_3484 extracellular solute-binding protein family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D Shal_3485 polar amino acid ABC transporter, inner membrane subunit K17077 artQ; arginine/lysine/histidine transport system permease protein D Shal_3486 ABC transporter related K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D Shal_2404 conserved hypothetical ABC transporter protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shal_1853 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Shal_2758 extracellular solute-binding protein family 5 K19226 sapA; cationic peptide transport system substrate-binding protein D Shal_2759 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein D Shal_2760 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein D Shal_2761 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein D Shal_2762 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein D Shal_3728 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Shal_3727 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Shal_3726 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Shal_3725 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein D Shal_3403 periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein D Shal_3404 transport system permease protein K25133 hmuU; heme transport system permease protein D Shal_3405 ABC transporter related K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D Shal_3624 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Shal_3623 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Shal_3459 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D Shal_3622 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Shal_3460 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Shal_3452 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D Shal_0158 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Shal_0157 ABC transporter related K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Shal_3800 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D Shal_3799 ABC-3 protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D Shal_0963 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Shal_0964 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Shal_3704 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Shal_0060 ABC-2 type transporter K09696 natB; sodium transport system permease protein D Shal_0061 ABC transporter related K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D Shal_0576 ABC-2 type transporter K19341 nosY; Cu-processing system permease protein D Shal_0560 copper ABC transporter, permease protein K19341 nosY; Cu-processing system permease protein D Shal_0559 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein D Shal_0575 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein D Shal_1615 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shal_1617 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Shal_1616 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Shal_4107 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D D Shal_4106 heme exporter protein CcmC K02195 ccmC; heme exporter protein C D Shal_4105 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D Shal_4104 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Shal_0289 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Shal_0288 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Shal_0747 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shal_3829 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shal_3828 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shal_0051 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shal_1800 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Shal_0746 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shal_1799 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shal_0050 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Shal_3433 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shal_3434 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shal_2603 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shal_2447 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shal_0718 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shal_0267 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Shal_4291 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shal_3435 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shal_2604 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shal_0719 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shal_2451 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shal_0269 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Shal_2750 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Shal_2016 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Shal_1624 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shal_0248 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shal_3778 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shal_0206 multi antimicrobial extrusion protein MatE K26937 dinF; MATE family, multidrug efflux pump D Shal_3089 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Shal_1152 glucose/galactose transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease D Shal_0684 major facilitator superfamily MFS_1 K03762 proP; MFS transporter, MHS family, proline/betaine transporter D Shal_3504 major facilitator superfamily MFS_1 K25494 nimT; MFS transporter, CP family, 2-nitroimidazole transporter D Shal_2659 major facilitator superfamily MFS_1 K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D Shal_3820 major facilitator superfamily MFS_1 K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D Shal_3439 nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Shal_0173 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Shal_0176 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Shal_0185 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D Shal_3197 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D Shal_0312 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Shal_2386 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Shal_0763 major facilitator superfamily MFS_1 K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein D Shal_2422 major facilitator superfamily MFS_1 K18567 pbuE; MFS transporter, DHA1 family, purine base/nucleoside efflux pump D Shal_2163 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D Shal_0506 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D Shal_1537 major facilitator superfamily MFS_1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D Shal_3718 major facilitator superfamily MFS_1 K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein D Shal_2706 major facilitator superfamily MFS_1 K06141 tsgA; MFS transporter, TsgA protein D Shal_3870 major facilitator superfamily MFS_1 K06141 tsgA; MFS transporter, TsgA protein D Shal_0215 major facilitator superfamily MFS_1 K08368 yaaU; MFS transporter, putative metabolite transport protein D Shal_2307 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Shal_1068 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D Shal_2306 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Shal_3709 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr D Shal_2308 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D Shal_3707 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Shal_1678 TrkA-N domain protein K10716 kch; voltage-gated potassium channel D Shal_1623 Ion transport protein K10716 kch; voltage-gated potassium channel D Shal_3580 Ion transport 2 domain protein K10716 kch; voltage-gated potassium channel D Shal_2446 Ion transport 2 domain protein K10716 kch; voltage-gated potassium channel D Shal_3421 Ion transport protein K08714 VGSC; voltage-gated sodium channel D Shal_0415 ammonium transporter K03320 amt; ammonium transporter, Amt family D Shal_0889 Rh family protein/ammonium transporter K03320 amt; ammonium transporter, Amt family D Shal_3262 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shal_0195 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shal_1728 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18] D Shal_3627 Glutathione S-transferase domain K03599 sspA; stringent starvation protein A D Shal_2675 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D Shal_2676 Tetratricopeptide TPR_2 repeat protein K07114 yfbK; Ca-activated chloride channel homolog D Shal_1736 LPXTG-motif cell wall anchor domain K07114 yfbK; Ca-activated chloride channel homolog D Shal_1976 Vault protein inter-alpha-trypsin domain protein K07114 yfbK; Ca-activated chloride channel homolog D Shal_2083 protein of unknown function UPF0005 K19416 yccA; modulator of FtsH protease D Shal_2590 formate/nitrite transporter K06212 focA; formate transporter D Shal_3645 MscS Mechanosensitive ion channel K22051 mscM; miniconductance mechanosensitive channel D Shal_3475 MscS Mechanosensitive ion channel K22051 mscM; miniconductance mechanosensitive channel D Shal_0532 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shal_3805 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shal_1185 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Shal_2399 MscS Mechanosensitive ion channel K16052 ynaI; MscS family membrane protein D Shal_0085 MscS Mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel D Shal_0213 magnesium transporter K06213 mgtE; magnesium transporter D Shal_3710 magnesium transporter K06213 mgtE; magnesium transporter D Shal_4267 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_3077 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_4268 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shal_3076 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shal_3679 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX D Shal_1685 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shal_4236 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shal_3401 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shal_2723 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shal_2724 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shal_3617 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shal_3618 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Shal_2722 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Shal_1688 Tol-Pal system TolQ K03562 tolQ; biopolymer transport protein TolQ D Shal_1689 Biopolymer transport TolR K03560 tolR; biopolymer transport protein TolR D Shal_2539 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D Shal_2053 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D Shal_2214 CrcB protein K06199 crcB; fluoride exporter D Shal_3763 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_2700 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_2699 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_1363 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_1094 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_0961 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_2065 porin Gram-negative type K09476 ompF; outer membrane pore protein F D Shal_0976 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shal_1123 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shal_0531 OmpA domain protein transmembrane region-containing protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shal_1184 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shal_3926 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shal_2791 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Shal_0442 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Shal_2681 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Shal_3137 nucleoside-specific channel-forming protein Tsx K05517 tsx; nucleoside-specific channel-forming protein D Shal_2882 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Shal_0766 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein D Shal_3286 TonB-dependent receptor plug K16092 btuB; vitamin B12 transporter D Shal_3399 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Shal_3020 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D Shal_3625 TonB-dependent receptor plug K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_2585 TonB-dependent receptor plug K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_3938 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_4287 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_1923 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_1145 TonB-dependent receptor plug K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_1041 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_2461 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_3508 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_1581 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_2727 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Shal_3906 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system D Shal_0601 outer membrane efflux family protein, putative K15725 czcC; outer membrane protein, heavy metal efflux system D Shal_3657 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shal_3925 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Shal_2168 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Shal_1483 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shal_1512 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein D Shal_3101 Carbohydrate-selective porin OprB K07267 oprB; porin D Shal_2973 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family D Shal_1370 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB D Shal_2320 NlpBDapX family lipoprotein K07287 bamC; outer membrane protein assembly factor BamC D Shal_3249 putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD D Shal_1348 SmpA/OmlA domain protein K06186 bamE; outer membrane protein assembly factor BamE D Shal_1844 surface antigen (D15) K07278 tamA; translocation and assembly module TamA D Shal_1843 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB D Shal_0977 Ig domain protein group 2 domain protein K21449 ata; trimeric autotransporter adhesin D Shal_3703 Cell envelope biogenesis YhbN K09774 lptA; lipopolysaccharide export system protein LptA D Shal_3702 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC D Shal_0918 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein D Shal_3229 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein D Shal_3225 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein D Shal_0945 LrgA family protein K06518 cidA; holin-like protein D Shal_2952 amino acid permease-associated region K20265 gadC; glutamate:GABA antiporter D Shal_2708 amino acid permease-associated region K20265 gadC; glutamate:GABA antiporter D Shal_0340 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF D Shal_0603 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Shal_3904 heavy metal efflux pump, CzcA family K15726 czcA; heavy metal efflux system protein D Shal_0278 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein D Shal_1387 acriflavin resistance protein K18303 mexK; multidrug efflux pump D Shal_0198 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2318 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_3933 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_2167 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2889 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_1195 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_4031 small multidrug resistance protein K03297 emrE; small multidrug resistance pump D Shal_0434 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Shal_0186 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Shal_2568 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Shal_3562 gluconate transporter K13629 dsdX; D-serine transporter D Shal_1682 Na+/H+ antiporter NhaC K07084 yuiF; putative amino acid transporter D Shal_2799 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family D Shal_0742 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D Shal_3083 L-lactate permease K03303 lutP; lactate permease D Shal_3761 BCCT transporter K05020 opuD; glycine betaine transporter D Shal_2825 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein D Shal_0220 choline/carnitine/betaine transporter K05245 caiT; L-carnitine/gamma-butyrobetaine antiporter D Shal_0386 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Shal_3699 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Shal_2587 sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter D Shal_2680 sodium/proline symporter K11928 putP; sodium/proline symporter D Shal_2565 Na+/solute symporter K14393 actP; cation/acetate symporter D Shal_1547 sodium:dicarboxylate symporter K07862 sstT; serine/threonine transporter D Shal_3038 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Shal_4200 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Shal_3322 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D Shal_1071 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D Shal_1841 Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family D Shal_0547 Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family D Shal_3334 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shal_3977 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shal_2943 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shal_4275 sodium/hydrogen exchanger K11105 cvrA; potassium/hydrogen antiporter D Shal_1106 sodium/hydrogen exchanger K03316 nhaP; Na+:H+ antiporter D Shal_1259 potassium efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D Shal_1985 NAD(P)H dehydrogenase (quinone) K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG D Shal_1260 NAD(P)H dehydrogenase (quinone) K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG D Shal_2963 potassium efflux system protein K03455 KEA1_2_3; K+:H+ antiporter D Shal_0707 sodium/hydrogen exchanger K26730 napA; Na+:H+ antiporter D Shal_0023 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Shal_0019 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Shal_0024 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Shal_2161 permease for cytosine/purines uracil thiamine allantoin K10974 codB; cytosine permease D Shal_2334 uracil-xanthine permease K02824 uraA; uracil permease D Shal_1373 uracil-xanthine permease K16346 xanQ; xanthine permease XanQ D Shal_3315 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shal_3171 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shal_3115 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shal_2835 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shal_0660 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shal_3750 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Shal_0731 aromatic amino acid permease K03834 tyrP; tyrosine-specific transport protein D Shal_0589 aromatic amino acid transporter K03834 tyrP; tyrosine-specific transport protein D Shal_0272 aromatic amino acid transporter K03835 mtr; tryptophan-specific transport protein D Shal_1881 putative serine transporter K03837 sdaC; serine transporter D Shal_0823 aromatic amino acid permease K03837 sdaC; serine transporter D Shal_0865 serine transporter K26604 cyuP; cysteine uptake transport protein D Shal_1034 Chloride channel core K03281 clcA; chloride channel protein, CIC family D Shal_0806 chromate transporter, chromate ion transporter (CHR) family K07240 chrA; chromate transporter D Shal_1766 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Shal_3822 arsenical-resistance protein K03325 ACR3; arsenite transporter D Shal_3359 Na+/H+ antiporter MnhB subunit-related protein K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D Shal_3360 NADH-ubiquinone oxidoreductase chain 4L K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D Shal_3364 NADH dehydrogenase (quinone) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D Shal_3361 NADH dehydrogenase (quinone) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D Shal_3362 NADH dehydrogenase (quinone) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D Shal_3356 cation antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D Shal_3357 multiple resistance and pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D Shal_3358 monovalent cation/proton antiporter, MnhG/PhaG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D Shal_1129 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Shal_2324 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO D Shal_0869 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Shal_2417 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Shal_0086 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein D Shal_0565 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Shal_2518 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Shal_3393 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Shal_2326 protein of unknown function UPF0118 K03548 perM; putative permease D Shal_0153 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter D Shal_0454 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Shal_0730 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D Shal_2721 TonB family protein K03832 tonB; periplasmic protein TonB D Shal_3400 TonB family protein K03832 tonB; periplasmic protein TonB D Shal_3615 TonB family protein K03832 tonB; periplasmic protein TonB D Shal_2620 TonB family protein K03832 tonB; periplasmic protein TonB D Shal_1692 Peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D Shal_1690 Tol-Pal system TolA K03646 tolA; colicin import membrane protein D Shal_1691 Tol-Pal system beta propeller repeat TolB K03641 tolB; TolB protein D Shal_1237 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D Shal_1236 oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Shal_1235 sodium pump decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D Shal_3281 cytochrome c biogenesis protein transmembrane region K08344 scsB; suppressor for copper-sensitivity B D Shal_0177 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Shal_3440 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D Shal_0178 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Shal_3441 nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D Shal_0180 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Shal_3443 respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D Shal_0492 molybdopterin oxidoreductase Fe4S4 region K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3] D Shal_2926 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D Shal_0404 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D Shal_0406 Dimethylsulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D Shal_2925 Dimethylsulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D Shal_0405 putative anaerobic dimethyl sulfoxide reductase, subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D Shal_3415 trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shal_3414 trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D Shal_3416 cytoplasmic chaperone TorD family protein K03533 torD; TorA specific chaperone D Shal_2153 molybdopterin oxidoreductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D Shal_3271 Nitrate reductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Shal_3127 molybdopterin oxidoreductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Shal_3126 4Fe-4S ferredoxin iron-sulfur binding domain protein K16293 psrB; polysulfide reductase chain B D Shal_3125 Polysulphide reductase NrfD K16294 psrC; polysulfide reductase chain C D Shal_2164 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system D Shal_0505 secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system D Shal_3905 biotin/lipoyl attachment domain-containing protein K15727 czcB; membrane fusion protein, heavy metal efflux system D Shal_0602 efflux transporter, RND family, MFP subunit K15727 czcB; membrane fusion protein, heavy metal efflux system D Shal_0279 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D Shal_3924 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Shal_1994 toxin secretion, membrane fusion protein K13408 cvaA; membrane fusion protein D Shal_1974 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D Shal_0197 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2166 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1194 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2319 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_3932 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1199 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2888 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2495 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2911 efflux transporter, RND family, MFP subunit K18145 adeA; membrane fusion protein, multidrug efflux system D Shal_0855 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D Shal_2459 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter D Shal_2777 FeoA family protein K04758 feoA; ferrous iron transport protein A D Shal_2776 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Shal_0550 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Shal_4101 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Shal_0933 MltA-interacting MipA family protein K07274 mipA; MipA family protein D Shal_3547 MltA-interacting MipA family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:shl02044] D Shal_3657 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shal_3923 ABC transporter transmembrane region type 1 K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Shal_3924 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Shal_3925 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Shal_1994 toxin secretion, membrane fusion protein K13408 cvaA; membrane fusion protein D Shal_1018 Peptidoglycan-binding domain 1 protein K02450 gspA; general secretion pathway protein A D Shal_1019 general secretion pathway protein B K02451 gspB; general secretion pathway protein B D Shal_4175 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D Shal_4174 general secretion pathway protein D K02453 gspD; general secretion pathway protein D D Shal_4173 general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D Shal_4172 general secretion pathway protein F K02455 gspF; general secretion pathway protein F D Shal_4171 general secretion pathway protein G K02456 gspG; general secretion pathway protein G D Shal_4170 general secretion pathway protein H K02457 gspH; general secretion pathway protein H D Shal_4169 general secretion pathway protein I K02458 gspI; general secretion pathway protein I D Shal_4168 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D Shal_4167 General secretion pathway protein K K02460 gspK; general secretion pathway protein K D Shal_4166 general secretion pathway protein L K02461 gspL; general secretion pathway protein L D Shal_4165 General secretion pathway M protein K02462 gspM; general secretion pathway protein M D Shal_4164 type II secretion system protein N K02463 gspN; general secretion pathway protein N D Shal_0468 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Shal_0471 prepilin peptidase dependent protein D K02650 pilA; type IV pilus assembly protein PilA D Shal_0470 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Shal_0469 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Shal_1139 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE D Shal_1365 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Shal_4087 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Shal_4086 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Shal_4085 Pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO D Shal_4084 Pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP D Shal_4083 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Shal_1173 twitching motility protein K02669 pilT; twitching motility protein PilT D Shal_1174 twitching motility protein K02670 pilU; twitching motility protein PilU D Shal_1135 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Shal_1136 prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW D Shal_1137 type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX D Shal_1138 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1 D Shal_2374 type IV pilus biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ D Shal_1142 general secretion pathway protein H K08084 fimT; type IV fimbrial biogenesis protein FimT D Shal_1141 methylation site containing protein K08085 fimU; type IV fimbrial biogenesis protein FimU D Shal_2642 conserved hypothetical protein K08086 fimV; pilus assembly protein FimV D Shal_2284 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Shal_2282 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Shal_2281 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Shal_2276 Flp pilus assembly protein ATPase CpaE-like protein K02282 cpaE; pilus assembly protein CpaE D Shal_2275 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Shal_2274 type II secretion system protein K12510 tadB; tight adherence protein B D Shal_2273 type II secretion system protein K12511 tadC; tight adherence protein C D Shal_2285 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D Shal_3845 methylation site containing protein K10924 mshA; MSHA pilin protein MshA D Shal_3846 MSHA pilin protein MshA K10924 mshA; MSHA pilin protein MshA D Shal_2790 type IV pilin, putative K10924 mshA; MSHA pilin protein MshA D Shal_2254 hypothetical protein K10924 mshA; MSHA pilin protein MshA D Shal_3847 methylation site containing protein K10925 mshB; MSHA pilin protein MshB D Shal_3390 pilin, putative K10925 mshB; MSHA pilin protein MshB D Shal_3844 MSHA pilin protein MshC K10926 mshC; MSHA pilin protein MshC D Shal_3843 methylation site containing protein K10927 mshD; MSHA pilin protein MshD D Shal_3850 type II secretion system protein E K12276 mshE; MSHA biogenesis protein MshE D Shal_3849 type II secretion system protein K12278 mshG; MSHA biogenesis protein MshG D Shal_3857 conserved hypothetical biogenesis protein MshI K12279 mshI; MSHA biogenesis protein MshI D Shal_3855 MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ D Shal_3854 MSHA biogenesis protein MshK K12281 mshK; MSHA biogenesis protein MshK D Shal_3853 pilus (MSHA type) biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL D Shal_3852 MSHA biogenesis protein MshM K12283 mshM; MSHA biogenesis protein MshM D Shal_3851 TPR repeat-containing protein K12284 mshN; MSHA biogenesis protein MshN D Shal_3842 methylation site containing protein K12285 mshO; MSHA biogenesis protein MshO D Shal_3841 MSHA biogenesis protein MshP K12286 mshP; MSHA biogenesis protein MshP D Shal_3840 PA14-related domain protein K12287 mshQ; MSHA biogenesis protein MshQ D Shal_1296 MSHA biogenesis protein MshQ K12287 mshQ; MSHA biogenesis protein MshQ D Shal_1170 protein of unknown function YGGT K02221 yggT; YggT family protein D Shal_2749 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA D Shal_3351 CMP/dCMP deaminase zinc-binding K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Shal_2507 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Shal_4047 conserved hypothetical protein K22513 spaM; type III secretion system protein D Shal_1462 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shal_4229 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shal_1461 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shal_4230 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shal_1475 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein D Shal_4239 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shal_1448 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shal_4241 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shal_1450 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shal_4242 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shal_1451 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shal_4234 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shal_1456 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shal_1457 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D Shal_4233 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shal_1458 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shal_4232 export protein FliQ family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Shal_1459 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Shal_1460 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shal_4231 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shal_0861 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D Shal_2881 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein D Shal_2882 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein D Shal_2794 P pilus assembly protein porin PapC-like protein K21966 ecpC; Mat/Ecp fimbriae outer membrane usher protein D Shal_0463 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Shal_0045 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB D Shal_1556 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shal_3158 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Shal_4147 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Shal_3157 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Shal_1557 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Shal_3150 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Shal_4114 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Shal_1096 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Shal_0287 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Shal_1555 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Shal_2701 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_4311 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D Shal_3882 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Shal_3883 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Shal_3884 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:shl02042] D Shal_2584 C4-dicarboxylate transporter/malic acid transport protein K11041 eta; exfoliative toxin A/B D Shal_3763 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_2700 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_2699 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_1363 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_1094 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_0961 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Shal_1898 channel protein, hemolysin III family K11068 hlyIII; hemolysin III D Shal_2840 Microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D Shal_0031 Microbial collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] C 02022 Two-component system [BR:shl02022] D Shal_3058 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Shal_3059 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D Shal_2532 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_3026 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_2531 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shal_3025 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shal_0239 histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D Shal_0240 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D Shal_0337 histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D Shal_0338 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shal_2220 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR D Shal_3417 Hpt sensor hybrid histidine kinase K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3] D Shal_3419 two component transcriptional regulator, winged helix family K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR D Shal_0786 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D Shal_0930 histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Shal_1734 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shal_0132 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shal_0931 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shal_3605 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Shal_0175 histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D Shal_0174 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D Shal_0885 histidine kinase K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3] D Shal_0884 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D Shal_1217 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D Shal_2346 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D Shal_1564 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Shal_1563 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator D Shal_0342 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D Shal_0341 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D Shal_0774 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Shal_0151 histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Shal_1468 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shal_1466 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shal_1469 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shal_1425 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_2398 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_1546 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_3128 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shal_0408 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shal_2062 histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D Shal_3129 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shal_2061 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR D Shal_1445 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shal_1446 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shal_4237 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shal_1909 histidine kinase K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3] D Shal_4003 histidine kinase K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3] D Shal_0611 histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D Shal_0612 two component transcriptional regulator, Fis family K15012 regA; two-component system, response regulator RegA D Shal_2562 histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D Shal_1517 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] D Shal_0720 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] D Shal_3789 PAS/PAC sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 02035 Bacterial motility proteins [BR:shl02035] D Shal_1468 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Shal_1472 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shal_1473 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Shal_1426 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Shal_1469 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Shal_1466 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Shal_1467 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Shal_1425 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_2398 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_1546 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Shal_0952 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_0059 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_1385 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_0912 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_1374 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_1811 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_2304 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_3251 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_3586 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Shal_3587 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_4016 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_2625 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Shal_2632 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Shal_3953 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shal_2428 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor D Shal_4241 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shal_1450 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Shal_4242 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shal_1451 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Shal_1452 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Shal_1457 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D Shal_4233 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shal_1458 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Shal_4232 export protein FliQ family 3 K02420 fliQ; flagellar biosynthesis protein FliQ D Shal_1459 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Shal_1460 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shal_4231 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Shal_1462 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shal_4229 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Shal_1461 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shal_4230 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Shal_4240 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shal_1449 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Shal_1455 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Shal_4234 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shal_1456 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Shal_4239 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shal_1448 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Shal_4254 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Shal_1434 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Shal_1424 SAF domain protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D Shal_4246 SAF domain K02386 flgA; flagellar basal body P-ring formation protein FlgA D Shal_4253 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Shal_1433 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Shal_0096 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shal_4265 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shal_1454 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Shal_4238 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Shal_1447 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Shal_1453 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Shal_4264 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Shal_4247 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Shal_1427 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Shal_4248 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Shal_1428 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Shal_4249 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Shal_1429 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Shal_4251 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Shal_1431 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Shal_4252 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Shal_1432 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Shal_4255 conserved hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ D Shal_1435 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D Shal_4250 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Shal_1430 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE D Shal_4256 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Shal_1436 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Shal_1437 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Shal_4257 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Shal_1422 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D Shal_4244 conserved hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN D Shal_1421 protein of unknown function DUF400 K09860 flgP; outer membrane protein FlgP D Shal_3679 Sel1 domain protein repeat-containing protein K21217 motX; sodium-type polar flagellar protein MotX D Shal_1685 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shal_4236 OmpA/MotB domain protein K21218 motY; sodium-type flagellar protein MotY D Shal_4259 protein of unknown function UPF0153 K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D Shal_4260 flagellin domain protein K02406 fliC; flagellin D Shal_1439 flagellin domain protein K02406 fliC; flagellin D Shal_1438 flagellin domain protein K02406 fliC; flagellin D Shal_4261 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Shal_1441 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Shal_4262 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Shal_1443 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Shal_1465 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Shal_4266 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Shal_4267 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_3077 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Shal_4268 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shal_3076 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Shal_1444 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Shal_1445 PAS/PAC sensor signal transduction histidine kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3] D Shal_1446 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shal_4237 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Shal_1423 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Shal_4245 conserved hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM D Shal_1440 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG D Shal_1463 GTP-binding signal recognition particle SRP54 G-domain K02404 flhF; flagellar biosynthesis protein FlhF D Shal_1464 Cobyrinic acid ac-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG D Shal_1173 twitching motility protein K02669 pilT; twitching motility protein PilT D Shal_1174 twitching motility protein K02670 pilU; twitching motility protein PilU D Shal_0471 prepilin peptidase dependent protein D K02650 pilA; type IV pilus assembly protein PilA D Shal_0470 type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB D Shal_0469 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Shal_0468 Prepilin peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Shal_1365 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D Shal_4083 type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ D Shal_4084 Pilus assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP D Shal_4085 Pilus assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO D Shal_4086 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Shal_4087 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Shal_2374 type IV pilus biogenesis protein PilZ K02676 pilZ; type IV pilus assembly protein PilZ D Shal_1135 type IV pilus modification protein PilV K02671 pilV; type IV pilus assembly protein PilV D Shal_1136 prepilin-type cleavage/methylation-like protein K02672 pilW; type IV pilus assembly protein PilW D Shal_1137 type IV pilus assembly protein PilX K02673 pilX; type IV pilus assembly protein PilX D Shal_1138 type IV pilin biogenesis protein, putative K02674 pilY1; type IV pilus assembly protein PilY1 D Shal_1139 methylation site containing protein K02655 pilE; type IV pilus assembly protein PilE D Shal_2285 hypothetical protein K02651 flp; pilus assembly protein Flp/PilA D Shal_2284 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Shal_2282 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Shal_2281 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Shal_2276 Flp pilus assembly protein ATPase CpaE-like protein K02282 cpaE; pilus assembly protein CpaE D Shal_2275 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Shal_2881 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein D Shal_2882 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:shl04812] D Shal_0949 protein of unknown function DUF52 K06990 MEMO1; MEMO1 family protein D Shal_3839 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Shal_3559 StbA family protein K18640 parM; plasmid segregation protein ParM D Shal_0459 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shal_0458 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Shal_1836 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Shal_1835 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Shal_1834 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Shal_1357 conserved hypothetical protein K03496 parA; chromosome partitioning protein D Shal_1471 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Shal_4303 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Shal_4302 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:shl04147] D Shal_1596 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG D Shal_1222 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Shal_2076 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shal_2078 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Shal_0846 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Shal_1947 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Shal_3195 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shal_2354 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D Shal_1683 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D Shal_3776 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Shal_3167 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Shal_1121 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Shal_0785 peptidase S9B dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] D Shal_1376 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Shal_4136 translation elongation factor Tu K02358 tuf; elongation factor Tu D Shal_4148 translation elongation factor Tu K02358 tuf; elongation factor Tu D Shal_2465 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Shal_1832 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_3395 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0063 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_0387 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Shal_2748 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2878 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2132 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2141 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_2122 nonspecific lipid-transfer protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Shal_1598 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Shal_1589 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Shal_4089 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Shal_4090 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Shal_0638 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Shal_0784 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Shal_0665 galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Shal_0444 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Shal_0353 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_0995 Glutamate--putrescine ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_3875 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Shal_1991 Glutathione synthase K21456 GSS; glutathione synthase [EC:6.3.2.3] D Shal_3888 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Shal_2410 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shal_2415 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D Shal_1532 4a-hydroxytetrahydrobiopterin dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D Shal_0699 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shal_1039 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shal_0723 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Shal_0488 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Shal_0478 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Shal_0218 Electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Shal_2106 Electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Shal_2944 Electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Shal_1949 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Shal_3151 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:shl02048] D Shal_4079 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Shal_4064 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Shal_1788 restriction endonuclease-like protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D Shal_3772 conserved hypothetical protein K19155 yhaV; toxin YhaV [EC:3.1.-.-] D Shal_0419 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D Shal_2754 phage shock protein C, PspC K03973 pspC; phage shock protein C D Shal_2755 shock B family protein K03970 pspB; phage shock protein B D Shal_0459 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Shal_3839 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Shal_3650 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D Shal_3652 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D Shal_1539 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Shal_1075 conserved hypothetical protein K19168 cptA; toxin CptA D Shal_1074 protein of unknown function DUF339 K09159 cptB; antitoxin CptB D Shal_1572 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:shl04090] D Shal_0785 peptidase S9B dipeptidylpeptidase IV domain protein K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5] C 01504 Antimicrobial resistance genes [BR:shl01504] D Shal_3334 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shal_3977 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shal_2943 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump D Shal_2005 transferase hexapeptide repeat containing protein K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D Shal_3759 pentapeptide repeat protein K18555 qnr; fluoroquinolone resistance protein D Shal_3779 pentapeptide repeat protein K18555 qnr; fluoroquinolone resistance protein D Shal_2532 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_3026 histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D Shal_2531 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shal_3025 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP D Shal_0197 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2166 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1194 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2319 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_3932 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_1199 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2888 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_2495 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Shal_0198 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2318 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_3933 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_2167 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2889 acriflavin resistance protein K18138 acrB; multidrug efflux pump D Shal_1195 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Shal_2168 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system D Shal_1389 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D Shal_1974 efflux transporter, RND family, MFP subunit K18302 mexJ; membrane fusion protein, multidrug efflux system D Shal_1387 acriflavin resistance protein K18303 mexK; multidrug efflux pump D Shal_2868 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Shal_2911 efflux transporter, RND family, MFP subunit K18145 adeA; membrane fusion protein, multidrug efflux system D Shal_3657 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D Shal_2065 porin Gram-negative type K09476 ompF; outer membrane pore protein F C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:shl00537] D Shal_0699 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Shal_1039 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:shl03100] D Shal_R0007 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0153 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0123 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0047 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0055 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Shal_R0140 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0105 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0029 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0032 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0027 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Shal_R0066 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0072 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0070 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0071 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0067 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0069 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0068 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Shal_R0004 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0064 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0063 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0065 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0150 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Shal_R0089 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shal_R0096 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shal_R0094 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Shal_R0109 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shal_R0113 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shal_R0111 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shal_R0116 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Shal_R0048 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0054 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0053 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0052 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0049 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Shal_R0088 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0128 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0127 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0131 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0130 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0129 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0097 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0147 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Shal_R0104 tRNA-His K14226 tRNA-His; tRNA His D Shal_R0139 tRNA-His K14226 tRNA-His; tRNA His D Shal_R0124 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shal_R0006 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shal_R0154 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Shal_R0110 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0112 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0114 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0117 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0095 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0093 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0108 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Shal_R0056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0062 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0060 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0059 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0057 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0061 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0058 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Shal_R0115 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0118 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0017 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0107 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0078 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0080 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0082 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0083 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0084 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0085 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0086 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0087 tRNA-Met K14230 tRNA-Met; tRNA Met D Shal_R0019 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shal_R0126 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shal_R0021 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shal_R0023 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Shal_R0106 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shal_R0137 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shal_R0138 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shal_R0099 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Shal_R0098 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0011 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0012 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0091 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0024 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0092 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Shal_R0133 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0018 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0149 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0022 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0020 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Shal_R0119 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Shal_R0120 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Shal_R0073 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0075 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0148 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0074 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0076 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0077 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Shal_R0036 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0043 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0039 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0044 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0045 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0040 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0037 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0042 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0041 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0046 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0038 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0079 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0081 tRNA-Val K14237 tRNA-Val; tRNA Val D Shal_R0010 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Shal_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0102 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0005 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0013 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0144 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0125 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0155 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0158 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0146 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0136 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Shal_R0122 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0152 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0157 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0135 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0101 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0143 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0008 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0145 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0014 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Shal_R0015 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0142 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0100 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0134 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0151 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0156 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0121 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0132 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0009 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Shal_R0103 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Shal_R0141 RNA component of RNaseP K01978 rnpB; M1 RNA D Shal_R0034 tmRNA as predicted by Rfam (RF00023), score 194.05 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Shal_2817 3-beta hydroxysteroid dehydrogenase/isomerase K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412] D Shal_3295 glucose sorbosone dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D Shal_3429 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D Shal_2092 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D Shal_3821 glyceraldehyde-3-phosphate dehydrogenase, type I K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D Shal_0652 (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D Shal_2030 NADH:flavin oxidoreductase/NADH oxidase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D Shal_0221 acyl-CoA dehydrogenase domain protein K08297 caiA; crotonobetainyl-CoA dehydrogenase [EC:1.3.8.13] D Shal_2114 acyl-CoA dehydrogenase domain protein K22818 fadE26; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase alpha subunit [EC:1.3.99.-] D Shal_2111 acyl-CoA dehydrogenase domain protein K22819 fadE27; 3-oxocholest-4-en-26-oyl-CoA dehydrogenase beta subunit [EC:1.3.99.-] D Shal_0121 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D Shal_2143 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D Shal_0217 FAD dependent oxidoreductase K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-] D Shal_0800 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D Shal_2236 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Shal_1765 peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D Shal_3311 Glutathione S-transferase domain K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Shal_1984 Glutathione S-transferase domain K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D Shal_2392 glutathione S-transferase, C-terminal domain K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D Shal_1864 oxidoreductase molybdopterin binding K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D Shal_2406 Cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D Shal_2915 alpha/beta hydrolase fold K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D Shal_2323 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Shal_3538 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Shal_0799 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D Shal_1089 Dyp-type peroxidase family K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D Shal_0900 Dyp-type peroxidase family K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D Shal_2262 nickel-dependent hydrogenase large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1] D Shal_2261 hydrogenase (NiFe) small subunit HydA K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1] D Shal_1408 hydrogenase, Fe-only K00533 E1.12.7.2L; ferredoxin hydrogenase large subunit [EC:1.12.7.2] D Shal_1409 iron hydrogenase small subunit K00534 E1.12.7.2S; ferredoxin hydrogenase small subunit [EC:1.12.7.2] D Shal_4189 Ferroxidase K02217 ftnA; ferritin [EC:1.16.3.2] D Shal_0896 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Shal_3739 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K12265 norW; nitric oxide reductase FlRd-NAD(+) reductase [EC:1.18.1.-] D Shal_2329 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D Shal_2691 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D Shal_0326 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shal_2593 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shal_0950 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Shal_1104 Oxidoreductase FAD-binding domain protein K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-] D Shal_1228 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Shal_3411 Coproporphyrinogen dehydrogenase K21936 chuW; anaerobilin synthase [EC:2.1.1.342] D Shal_0116 Coproporphyrinogen dehydrogenase K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350] D Shal_3257 transferase hexapeptide repeat containing protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D Shal_1601 transferase hexapeptide repeat containing protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D Shal_3226 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Shal_0821 transcriptional regulator, MarR family with acetyltransferase activity K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D Shal_1053 GCN5-related N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-] D Shal_1361 GCN5-related N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D Shal_1360 GCN5-related N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D Shal_1724 Leucyltransferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D Shal_1858 transglutaminase domain protein K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D Shal_1723 Arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D Shal_2820 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20] D Shal_1275 glycosyl transferase group 1 K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D Shal_2059 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Shal_1897 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Shal_0313 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D Shal_1027 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Shal_1026 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shal_3181 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shal_2063 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shal_2846 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Shal_1704 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D Shal_3572 (Glutamate--ammonia-ligase) adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D Shal_0514 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Shal_0517 RNA-directed DNA polymerase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Shal_3983 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D Shal_0673 serine/threonine protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1] D Shal_0236 Arylsulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22] D Shal_0231 Arylsulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22] D Shal_1652 Arylsulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22] D Shal_0222 L-carnitine dehydratase/bile acid-inducible protein F K08298 caiB; L-carnitine CoA-transferase [EC:2.8.3.21] D Shal_0374 conserved hypothetical 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shal_0064 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shal_0066 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shal_1687 Pol-Pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shal_3097 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Shal_2619 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Shal_2663 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D Shal_0721 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Shal_0162 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Shal_3004 beta-lactamase domain protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D Shal_2535 beta-lactamase domain protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D Shal_2916 beta-lactamase domain protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D Shal_1265 beta-lactamase domain protein K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21] D Shal_0702 Deoxyribonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D Shal_2182 Deoxyribonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D Shal_3886 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shal_3139 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shal_2373 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Shal_3860 nuclease (SNase domain protein) K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D Shal_2240 alpha/beta hydrolase fold K01175 ybfF; esterase [EC:3.1.-.-] D Shal_0092 glycoside hydrolase family 37 K03931 ygjK; glucosidase [EC:3.2.1.-] D Shal_3265 beta-lactamase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D Shal_3762 N-acyl-D-aspartate deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D Shal_1896 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Shal_0027 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Shal_1626 protein of unknown function DUF437 K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D Shal_0077 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Shal_0166 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Shal_3581 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25] D Shal_1771 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D Shal_1860 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shal_2672 ATPase associated with various cellular activities AAA_3 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D Shal_2819 alpha/beta hydrolase fold K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114] D Shal_2113 lipid-transfer protein K25623 ltp2; 17-hydroxy-3-oxo-4-pregnene-20-carboxyl-CoA lyase [EC:4.1.3.-] D Shal_1988 MaoC domain protein dehydratase K19659 phaJ; enoyl-CoA hydratase [EC:4.2.1.119] D Shal_3639 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Shal_0224 Enoyl-CoA hydratase/isomerase K08299 caiD; crotonobetainyl-CoA hydratase [EC:4.2.1.149] D Shal_2110 protein of unknown function DUF35 K25621 chsH2; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase alpha subunit [EC:4.2.1.-] D Shal_2112 MaoC domain protein dehydratase K25622 chsH1; 3-oxo-4,17-pregnadiene-20-carboxyl-CoA hydratase beta subunit [EC:4.2.1.-] D Shal_0165 diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D Shal_0636 diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D Shal_0975 peptidylprolyl isomerase FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D Shal_2818 AMP-dependent synthetase and ligase K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1] D Shal_0223 AMP-dependent synthetase and ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D Shal_2096 AMP-dependent synthetase and ligase K25775 casG; steroid-24-oyl-CoA synthetase [EC:6.2.1.-] D Shal_0743 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D Shal_1741 ATP dependent DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1] D Shal_1928 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Shal_1929 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Shal_1930 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Shal_1644 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D Shal_3187 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D Shal_1645 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D Shal_3186 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D Shal_1646 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D Shal_3185 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D Shal_1647 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D Shal_3184 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D Shal_3183 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D Shal_1648 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D Shal_1649 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D Shal_3182 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D Shal_2202 heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Shal_0708 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] C 99981 Carbohydrate metabolism D Shal_0755 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Shal_3418 TMAO reductase system periplasmic TorT K11930 torT; periplasmic protein TorT D Shal_3085 protein of unknown function DUF224 cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D Shal_3086 protein of unknown function DUF162 K18929 lldF; L-lactate dehydrogenase complex protein LldF D Shal_3087 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D Shal_0099 formate dehydrogenase subunit FdhD K02379 fdhD; FdhD protein D Shal_0499 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D Shal_1577 ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S D Shal_2034 ferredoxin K11107 yfaE; ferredoxin D Shal_1927 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Shal_1926 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Shal_1931 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Shal_4306 flavodoxin/nitric oxide synthase K06205 mioC; MioC protein D Shal_1573 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins D Shal_3740 beta-lactamase domain protein K12264 norV; anaerobic nitric oxide reductase flavorubredoxin D Shal_0716 NapD family protein K02570 napD; periplasmic nitrate reductase NapD D Shal_1528 ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF D Shal_3413 periplasmic nitrate reductase NapE K02571 napE; periplasmic nitrate reductase NapE D Shal_0570 tetratricopeptide TPR_2 repeat protein K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG D Shal_0554 Cytochrome c biogenesis factor-like protein K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG D Shal_2243 flavodoxin K03839 fldA; flavodoxin I D Shal_1092 NapC/NirT cytochrome c domain protein K02569 napC; cytochrome c-type protein NapC D Shal_0714 MauM/NapG family ferredoxin-type protein K02573 napG; ferredoxin-type protein NapG D Shal_0713 ferredoxin-type protein, NapH/MauN family K02574 napH; ferredoxin-type protein NapH D Shal_0219 Electron transfer flavoprotein alpha/beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Shal_2105 Electron transfer flavoprotein alpha/beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Shal_2945 Electron transfer flavoprotein alpha/beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Shal_0216 putative ferredoxin K03855 fixX; ferredoxin like protein D Shal_0301 conserved hypothetical protein K04013 nrfB; cytochrome c-type protein NrfB D Shal_0302 4Fe-4S ferredoxin iron-sulfur binding domain protein K04014 nrfC; protein NrfC D Shal_0571 4Fe-4S ferredoxin iron-sulfur binding domain protein K04014 nrfC; protein NrfC D Shal_0555 4Fe-4S ferredoxin iron-sulfur binding domain protein K04014 nrfC; protein NrfC D Shal_0556 Polysulphide reductase NrfD K04015 nrfD; protein NrfD D Shal_0303 Polysulphide reductase NrfD K04015 nrfD; protein NrfD D Shal_0572 Polysulphide reductase NrfD K04015 nrfD; protein NrfD D Shal_3276 protein of unknown function DUF1458 K09165 K09165; dodecin C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Shal_2578 protein of unknown function DUF540 K06203 cysZ; CysZ protein D Shal_1172 alanine racemase domain protein K06997 yggS; PLP dependent protein D Shal_2454 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase D Shal_0864 protein of unknown function DUF1063 K26607 cyuA; putative L-cysteine desulfidase C 99986 Glycan metabolism D Shal_2047 protein of unknown function DUF1049 K08992 lapA; lipopolysaccharide assembly protein A D Shal_2048 conserved hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B D Shal_4202 glycosyl transferase family 25 K07270 K07270; glycosyl transferase, family 25 D Shal_4207 glycosyl transferase family 25 K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D Shal_3920 HemY domain protein K02498 hemY; HemY protein D Shal_3881 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D Shal_3880 Sterol-binding domain protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D Shal_3934 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D Shal_3108 Sterol-binding domain protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D Shal_0201 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein D Shal_0202 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein D Shal_3205 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism D Shal_3287 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D Shal_2391 Carboxylesterase K06999 K06999; phospholipase/carboxylesterase D Shal_1958 GCN5-related N-acetyltransferase K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Shal_1797 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Shal_3337 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Shal_1719 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D Shal_0483 regulator of RpoD, Rsd/AlgQ K07740 rsd; regulator of sigma D D Shal_0888 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D Shal_0242 RNA binding S1 domain protein K06959 tex; protein Tex C 99974 Translation D Shal_3304 RNA-metabolising metallo-beta-lactamase K07576 K07576; metallo-beta-lactamase family protein D Shal_1500 beta-lactamase domain protein K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D Shal_0828 protein of unknown function DUF306 Meta and HslJ K03668 hslJ; heat shock protein HslJ D Shal_1720 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D Shal_2769 trigger factor K03545 tig; trigger factor D Shal_1865 Ferric reductase domain protein transmembrane component domain K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D Shal_0496 formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D Shal_3468 UreE urease accessory domain protein K03187 ureE; urease accessory protein D Shal_3469 Urease accessory protein UreF K03188 ureF; urease accessory protein D Shal_3470 urease accessory protein UreG K03189 ureG; urease accessory protein D Shal_3464 Urease accessory protein UreD K03190 ureD; urease accessory protein D Shal_1345 SsrA-binding protein K03664 smpB; SsrA-binding protein D Shal_2268 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC D Shal_2269 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D Shal_2270 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D Shal_2266 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF D Shal_3959 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Shal_1009 2OG-Fe(II) oxygenase K07394 K07394; SM-20-related protein D Shal_0592 DSBA oxidoreductase K07396 K07396; putative protein-disulfide isomerase D Shal_0247 HesB/YadR/YfhF-family protein K07400 nfuA; Fe/S biogenesis protein NfuA D Shal_0645 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor D Shal_1643 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D Shal_1893 Methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D Shal_3066 5'-3' exonuclease K01146 xni; protein Xni D Shal_0429 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Shal_1863 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC D Shal_4069 protein of unknown function UPF0102 K07460 yraN; putative endonuclease D Shal_4185 Excinuclease ABC C subunit domain protein K07461 K07461; putative endonuclease D Shal_0029 DNA protecting protein DprA K04096 smf; DNA processing protein D Shal_2215 AAA ATPase central domain protein K07478 ycaJ; putative ATPase D Shal_0032 DNA topoisomerase type IA zn finger domain protein K07479 yrdD; putative DNA topoisomerase D Shal_2525 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase D Shal_1998 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase C 99979 Viral proteins C 99998 Others D Shal_2756 phage shock protein A, PspA K03969 pspA; phage shock protein A D Shal_0365 Rhodanese domain protein K03972 pspE; phage shock protein E D Shal_2686 Rhodanese domain protein K03972 pspE; phage shock protein E D Shal_1591 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Shal_2497 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Shal_2496 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Shal_2910 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Shal_0189 choline/carnitine/betaine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D Shal_0410 choline/carnitine/betaine transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D Shal_3318 BCCT transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D Shal_1481 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Shal_1895 major facilitator superfamily MFS_1 K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Shal_3583 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Shal_0666 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family D Shal_3937 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Shal_3201 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Shal_3819 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Shal_1125 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Shal_0768 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Shal_0859 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D Shal_2855 nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family D Shal_3138 nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family D Shal_0416 nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family D Shal_0725 Na+ dependent nucleoside transporter domain protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family D Shal_3042 YidE/YbjL duplication K07085 K07085; putative transport protein C 99978 Cell growth D Shal_2622 intracellular septation protein A K06190 ispZ; intracellular septation protein D Shal_3908 Hemerythrin HHE cation binding domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D Shal_3316 SpoOM family protein K06377 spo0M; sporulation-control protein D Shal_2339 SpoVR family protein K06415 spoVR; stage V sporulation protein R D Shal_0042 peptidase M23B K22719 envC; murein hydrolase activator C 99993 Cell motility D Shal_0878 membrane lipoprotein lipid attachment site K07337 K07337; penicillin-binding protein activator D Shal_2998 Syd family protein K15723 syd; SecY interacting protein Syd C 99995 Signaling proteins D Shal_0474 signaling modulator of AmpD, AmpE K03807 ampE; AmpE protein D Shal_2365 ProQ activator of osmoprotectant transporter ProP K03607 proQ; ProP effector D Shal_1003 UspA domain protein K06149 uspA; universal stress protein A D Shal_3427 UspA domain protein K06149 uspA; universal stress protein A D Shal_2206 UspA domain protein K14055 uspE; universal stress protein E D Shal_0711 conserved hypothetical protein K14055 uspE; universal stress protein E D Shal_0937 UspA domain protein K14055 uspE; universal stress protein E D Shal_3752 conserved hypothetical protein K14055 uspE; universal stress protein E D Shal_0354 GTP-binding protein TypA K06207 typA; GTP-binding protein D Shal_3223 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Shal_3790 PhoH family protein K07175 phoH2; PhoH-like ATPase D Shal_2337 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase D Shal_2564 putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase K07182 K07182; CBS domain-containing protein D Shal_3584 SH3 domain protein domain protein K07184 ygiM; SH3 domain protein D Shal_3132 membrane protein K07186 smp; membrane protein D Shal_3198 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D Shal_2216 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D Shal_3213 outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D Shal_1477 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Shal_1725 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB D Shal_3354 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB D Shal_2972 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Shal_1229 peptidase M23B K06194 nlpD; lipoprotein NlpD D Shal_3141 Tetratricopeptide TPR_2 repeat protein K05803 nlpI; lipoprotein NlpI D Shal_2887 OmpW family protein K07275 ompW; outer membrane protein D Shal_3676 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein D Shal_0848 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein D Shal_3194 Uncharacterized lipoprotein K07286 yajG; uncharacterized lipoprotein D Shal_1868 AsmA family protein K07289 asmA; AsmA protein D Shal_3830 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Shal_0049 conserved hypothetical protein K01993 ABC-2.TX; HlyD family secretion protein D Shal_3437 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Shal_2448 membrane-fusion protein K02005 ABC.CD.TX; HlyD family secretion protein D Shal_2449 membrane-fusion protein K02005 ABC.CD.TX; HlyD family secretion protein D Shal_4292 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Shal_2600 protein of unknown function UPF0118 K11744 tqsA; AI-2 transport protein TqsA D Shal_4108 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D Shal_4099 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Shal_4102 Tetratricopeptide domain protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D Shal_1366 conserved hypothetical protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D Shal_2826 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Shal_3649 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin D Shal_1633 Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC D Shal_0671 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D Shal_0914 ApaG domain protein K06195 apaG; ApaG protein D Shal_3915 Frataxin family protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY D Shal_0558 periplasmic copper-binding K07218 nosD; nitrous oxidase accessory protein D Shal_0574 periplasmic copper-binding K07218 nosD; nitrous oxidase accessory protein D Shal_0098 DNA binding domain, excisionase family K07219 K07219; putative molybdopterin biosynthesis protein D Shal_3398 protein of unknown function DUF1008 K07227 chuX; heme iron utilization protein D Shal_3527 putative lipoprotein K07231 K07231; putative iron-regulated protein D Shal_1261 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO D Shal_4289 DsrE family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur D Shal_0573 NosL family protein K19342 nosL; copper chaperone NosL D Shal_0557 NosL family protein K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D Shal_2638 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production D Shal_2209 Bax protein, putative K03796 bax; Bax protein D Shal_3342 BAX protein K03796 bax; Bax protein D Shal_3349 Mammalian cell entry related domain protein K06192 pqiB; paraquat-inducible protein B D Shal_0507 GCN5-related N-acetyltransferase K02348 elaA; ElaA protein D Shal_1519 PHP domain protein K04477 ycdX; putative hydrolase D Shal_0480 Patatin K07001 K07001; NTE family protein D Shal_2961 Patatin K07001 K07001; NTE family protein D Shal_2694 Patatin K07001 K07001; NTE family protein D Shal_1036 iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein D Shal_0360 putative ribonuclease BN K07058 K07058; membrane protein D Shal_0672 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA D Shal_0818 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE D Shal_1714 protein of unknown function DUF489 K07153 hflD; high frequency lysogenization protein D Shal_0226 transferase hexapeptide repeat containing protein K08279 caiE; carnitine operon protein CaiE D Shal_2938 LemA family protein K03744 lemA; LemA protein D Shal_0203 LemA family protein K03744 lemA; LemA protein D Shal_0880 SlyX family protein K03745 slyX; SlyX protein D Shal_0030 protein of unknown function DUF494 K03747 smg; Smg protein D Shal_1730 CreA family protein K05805 creA; CreA protein D Shal_0703 protein of unknown function DUF335 SprT K02742 sprT; SprT protein D Shal_2639 Sporulation domain protein K03749 dedD; DedD protein D Shal_4080 Sporulation domain protein K03112 damX; DamX protein D Shal_2369 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Shal_3350 integral membrane protein, PqiA family K03808 pqiA; paraquat-inducible protein A D Shal_2368 Paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D Shal_0981 protein of unknown function DUF368 K08974 K08974; putative membrane protein D Shal_3424 membrane-flanked domain K08981 K08981; putative membrane protein D Shal_3263 membrane-flanked domain K08981 K08981; putative membrane protein D Shal_0724 conserved hypothetical protein K08984 yjdF; putative membrane protein D Shal_2752 conserved hypothetical protein K08990 ycjF; putative membrane protein D Shal_0285 protein of unknown function DUF1145 K08993 yhhL; putative membrane protein D Shal_1941 conserved hypothetical protein K09858 K09858; SEC-C motif domain protein D Shal_2885 conserved hypothetical protein K09914 K09914; putative lipoprotein D Shal_2895 conserved hypothetical protein K09914 K09914; putative lipoprotein D Shal_0815 Cupin 2 conserved barrel domain protein K11312 K11312; cupin 2 domain-containing protein D Shal_1567 phosphate-starvation-inducible E K13256 psiE; protein PsiE D Shal_1285 alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA C 99997 Function unknown D Shal_4192 Ankyrin K06867 K06867; uncharacterized protein D Shal_3332 Ankyrin K06867 K06867; uncharacterized protein D Shal_1754 Ankyrin K06867 K06867; uncharacterized protein D Shal_1887 Radical SAM domain protein K06871 K06871; uncharacterized protein D Shal_4039 Radical SAM domain protein K06871 K06871; uncharacterized protein D Shal_2753 protein of unknown function DUF463 YcjX family protein K06918 K06918; uncharacterized protein D Shal_3723 protein of unknown function DUF134 K06933 K06933; uncharacterized protein D Shal_0929 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Shal_2823 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein D Shal_0038 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Shal_1965 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Shal_1753 GTP-binding protein HSR1-related K06946 K06946; uncharacterized protein D Shal_2552 NAD/FAD-binding protein-like protein K06954 K06954; uncharacterized protein D Shal_0065 conserved hypothetical protein K06975 K06975; uncharacterized protein D Shal_0789 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein D Shal_0984 protein of unknown function DUF861 cupin_3 K06995 K06995; uncharacterized protein D Shal_0277 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Shal_1671 Glyoxalase/bleomycin resistance protein/dioxygenase K06996 K06996; uncharacterized protein D Shal_3653 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein D Shal_1610 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein D Shal_2099 conserved hypothetical protein K07003 K07003; uncharacterized protein D Shal_3250 exporter of the RND superfamily protein-like protein K07003 K07003; uncharacterized protein D Shal_2358 conserved hypothetical protein K07003 K07003; uncharacterized protein D Shal_2228 Endonuclease/exonuclease/phosphatase K07004 K07004; uncharacterized protein D Shal_3124 sulfatase K07014 K07014; uncharacterized protein D Shal_2513 sulfatase K07014 K07014; uncharacterized protein D Shal_0545 putative esterase K07017 K07017; uncharacterized protein D Shal_3599 alpha/beta hydrolase fold K07019 K07019; uncharacterized protein D Shal_3072 dienelactone hydrolase K07020 K07020; uncharacterized protein D Shal_0942 GPR1/FUN34/yaaH family protein K07034 K07034; uncharacterized protein D Shal_2123 protein of unknown function DUF35 K07068 K07068; uncharacterized protein D Shal_0644 conserved hypothetical protein K07069 K07069; uncharacterized protein D Shal_3594 conserved hypothetical protein K07070 K07070; uncharacterized protein D Shal_2602 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein D Shal_0841 fumarate reductase/succinate dehydrogenase flavoprotein domain protein K07077 K07077; uncharacterized protein D Shal_0490 permease K07089 K07089; uncharacterized protein D Shal_0200 permease K07089 K07089; uncharacterized protein D Shal_0401 permease K07089 K07089; uncharacterized protein D Shal_3511 permease K07089 K07089; uncharacterized protein D Shal_3353 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shal_2731 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shal_2711 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shal_0620 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shal_0080 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shal_1069 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Shal_0199 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Shal_0875 phosphoribosyltransferase K07101 K07101; uncharacterized protein D Shal_0500 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein D Shal_4068 LppC family lipoprotein K07121 K07121; uncharacterized protein D Shal_0308 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shal_3602 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shal_1593 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Shal_4027 conserved hypothetical protein K07136 K07136; uncharacterized protein D Shal_1062 conserved hypothetical radical SAM protein K07139 K07139; uncharacterized protein D Shal_0607 ATP-dependent protease La (LON) domain protein, putative K07157 K07157; uncharacterized protein D Shal_4312 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Shal_1006 GatB/YqeY domain protein K09117 K09117; uncharacterized protein D Shal_1169 protein of unknown function DUF167 K09131 K09131; uncharacterized protein D Shal_0948 AMMECR1 domain protein K09141 K09141; uncharacterized protein D Shal_3239 protein of unknown function DUF493 K09158 K09158; uncharacterized protein D Shal_1839 protein of unknown function UPF0153 K09160 K09160; uncharacterized protein D Shal_3423 membrane-flanked domain K09167 K09167; uncharacterized protein D Shal_3312 protein of unknown function DUF985 K09705 K09705; uncharacterized protein D Shal_2305 conserved hypothetical protein K09707 K09707; uncharacterized protein D Shal_1272 protein of unknown function DUF333 K09712 K09712; uncharacterized protein D Shal_4194 protein of unknown function DUF333 K09712 K09712; uncharacterized protein D Shal_0697 protein of unknown function DUF342 K09749 K09749; uncharacterized protein D Shal_3046 protein of unknown function DUF188 K09768 K09768; uncharacterized protein D Shal_2623 YCII-related K09780 K09780; uncharacterized protein D Shal_0871 protein of unknown function DUF808 K09781 K09781; uncharacterized protein D Shal_2338 protein of unknown function DUF444 K09786 K09786; uncharacterized protein D Shal_1588 protein of unknown function DUF454 K09790 K09790; uncharacterized protein D Shal_2504 protein of unknown function DUF343 K09791 K09791; uncharacterized protein D Shal_2204 conserved hypothetical protein K09792 K09792; uncharacterized protein D Shal_0534 protein of unknown function DUF465 K09794 K09794; uncharacterized protein D Shal_3306 conserved hypothetical protein K09794 K09794; uncharacterized protein D Shal_3476 conserved hypothetical protein K09794 K09794; uncharacterized protein D Shal_2682 protein of unknown function DUF541 K09797 K09797; uncharacterized protein D Shal_0040 protein of unknown function DUF610 YibQ K09798 K09798; uncharacterized protein D Shal_1347 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein D Shal_0740 protein of unknown function DUF541 K09807 K09807; uncharacterized protein D Shal_3180 protein of unknown function DUF539 K05952 K05952; uncharacterized protein D Shal_1802 conserved hypothetical protein K00243 K00243; uncharacterized protein D Shal_3348 protein of unknown function DUF330 K09857 K09857; uncharacterized protein D Shal_0879 Tetratricopeptide TPR_2 repeat protein K09859 K09859; uncharacterized protein D Shal_1126 protein of unknown function DUF328 K09861 K09861; uncharacterized protein D Shal_0465 protein of unknown function DUF329 K09862 K09862; uncharacterized protein D Shal_1216 protein of unknown function DUF416 K09891 K09891; uncharacterized protein D Shal_4224 protein of unknown function DUF414 K09894 K09894; uncharacterized protein D Shal_3378 yecA family protein K09895 K09895; uncharacterized protein D Shal_2594 protein of unknown function DUF412 K09899 K09899; uncharacterized protein D Shal_1837 protein of unknown function DUF709 K09902 K09902; uncharacterized protein D Shal_2512 protein of unknown function DUF1414 K09904 K09904; uncharacterized protein D Shal_1621 protein of unknown function DUF991 K09907 K09907; uncharacterized protein D Shal_2733 conserved hypothetical protein K09909 K09909; uncharacterized protein D Shal_2541 conserved hypothetical protein K09909 K09909; uncharacterized protein D Shal_0883 conserved hypothetical protein K09910 K09910; uncharacterized protein D Shal_2051 conserved hypothetical protein K09912 K09912; uncharacterized protein D Shal_1801 protein of unknown function DUF480 K09915 K09915; uncharacterized protein D Shal_2027 protein of unknown function DUF1315 K09916 K09916; uncharacterized protein D Shal_2367 YebG family protein K09918 K09918; uncharacterized protein D Shal_3655 protein of unknown function DUF1249 K09920 K09920; uncharacterized protein D Shal_3911 protein of unknown function DUF484 K09921 K09921; uncharacterized protein D Shal_2052 protein of unknown function DUF486 K09922 K09922; uncharacterized protein D Shal_1156 protein of unknown function DUF469 K09923 K09923; uncharacterized protein D Shal_2854 conserved hypothetical protein K09924 K09924; uncharacterized protein D Shal_2201 conserved hypothetical protein K09926 K09926; uncharacterized protein D Shal_2508 conserved hypothetical protein K09928 K09928; uncharacterized protein D Shal_1586 conserved hypothetical protein K09929 K09929; uncharacterized protein D Shal_4198 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Shal_1585 protein of unknown function DUF692 K09930 K09930; uncharacterized protein D Shal_3681 hypothetical protein K09937 K09937; uncharacterized protein D Shal_2333 conserved hypothetical protein K09938 K09938; uncharacterized protein D Shal_0120 conserved hypothetical protein K09940 K09940; uncharacterized protein D Shal_2842 protein of unknown function DUF1415 K09941 K09941; uncharacterized protein D Shal_3491 putative periplasmic ligand-binding sensor protein K09945 K09945; uncharacterized protein D Shal_3102 conserved hypothetical protein K09950 K09950; uncharacterized protein D Shal_1358 conserved hypothetical protein K09954 K09954; uncharacterized protein D Shal_2894 protein of unknown function DUF925 K09962 K09962; uncharacterized protein D Shal_3808 GumN family protein K09973 K09973; uncharacterized protein D Shal_2439 conserved hypothetical protein K09978 K09978; uncharacterized protein D Shal_3576 conserved hypothetical protein K09980 K09980; uncharacterized protein D Shal_1707 protein of unknown function DUF1285 K09986 K09986; uncharacterized protein D Shal_3582 protein of unknown function DUF47 K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 28, 2024