+D
#
Transfer RNA Biogenesis - Seriola lalandi dorsalis (Yellowtail amberjack)
%
!
AEukaryotic type
B 5'processing factors
C Ribonucrease P
D 111664182 pop1; ribonucleases P/MRP protein subunit POP1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
D 111647655 pop4; ribonuclease P protein subunit p29 isoform X1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D 111644955 pop5; ribonuclease P/MRP protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D 111644307 ribonuclease P/MRP protein subunit POP5-like K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D 111657175 rpp30; ribonuclease P protein subunit p30 isoform X1 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D 111652517 ribonuclease P protein subunit p21-like K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
D 111668195 rpp14; ribonuclease P protein subunit p14 K14529 RPP14; ribonuclease P protein subunit RPP14 [EC:3.1.26.5]
D 111646991 pop7; ribonuclease P protein subunit p20 K14527 RPP20; ribonuclease P/MRP protein subunit RPP20 [EC:3.1.26.5]
D 111658542 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 111649506 uncharacterized protein LOC111649506 K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 111657443 ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
D 111650857 rpp38; ribonuclease P protein subunit p38 K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
D 111657053 rpp40; ribonuclease P protein subunit p40 K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D 111645177 elac1; zinc phosphodiesterase ELAC protein 1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 111655530 elac2; zinc phosphodiesterase ELAC protein 2 isoform X1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 111645945 ribonuclease T2-like K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D 111657425 ribonuclease Oy-like isoform X1 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D 111672986 pentatricopeptide repeat-containing protein 1, mitochondrial-like K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1
C CCA adding factors
D 111648065 CCA tRNA nucleotidyltransferase 1, mitochondrial-like K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D 111653184 trnt1; CCA tRNA nucleotidyltransferase 1, mitochondrial K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
D 111656517 tsen2; tRNA-splicing endonuclease subunit Sen2 K15322 TSEN2; tRNA-splicing endonuclease subunit Sen2 [EC:4.6.1.16]
D 111646683 tsen34; tRNA-splicing endonuclease subunit Sen34 K15323 TSEN34; tRNA-splicing endonuclease subunit Sen34 [EC:4.6.1.16]
D 111661253 tsen15; tRNA-splicing endonuclease subunit Sen15 K15324 TSEN15; tRNA-splicing endonuclease subunit Sen15
D 111660463 tsen54; tRNA-splicing endonuclease subunit Sen54 K15326 TSEN54; tRNA-splicing endonuclease subunit Sen54
C tRNA splicing ligase complex
D 111671047 rtcb; tRNA-splicing ligase RtcB homolog K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D 111654358 cunh2orf49; ashwin K15432 ASW; ashwin
D 111646042 rtraf; RNA transcription, translation and transport factor protein K15433 CGI99; RLL motif containing protein 1
D 111657404 fam98b; protein FAM98B K15434 FAM98B; protein FAM98B
D 111650928 protein FAM98B-like K15434 FAM98B; protein FAM98B
D 111672737 ddx1; ATP-dependent RNA helicase DDX1 K13177 DDX1; ATP-dependent RNA helicase DDX1 [EC:5.6.2.7]
D 111652465 zbtb8os; protein archease K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
D 111655830 trpt1; tRNA 2'-phosphotransferase 1 K10669 TRPT1; 2'-phosphotransferase [EC:2.7.1.160]
B tRNA transport factors
C tRNA export factors
D 111662736 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 111671055 xpot; exportin-T K14288 XPOT; exportin-T
D 111669467 exportin-1 K14290 XPO1; exportin-1
D 111659451 exportin-1-like K14290 XPO1; exportin-1
D 111654701 xpo5; exportin-5 K14289 XPO5; exportin-5
D 111645612 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
D 111645613 elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
D 111662021 elongation factor 1-alpha 1-like K03231 EEF1A; elongation factor 1-alpha
D 111656572 elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
D 111660429 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
D 111655812 scyl1; N-terminal kinase-like protein K08876 SCYL1; SCY1-like protein 1
D 111646716 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
D 111671819 GTP-binding protein 1-like isoform X1 K24887 GTPBP1; GTP-binding protein 1
C tRNA import factors
D 111670437 tnpo3; transportin-3 K15436 TRPO3; transportin-3
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D 111672319 eprs; bifunctional glutamate/proline--tRNA ligase isoform X1 K14163 EPRS; bifunctional glutamyl/prolyl-tRNA synthetase [EC:6.1.1.17 6.1.1.15]
D 111655540 ears2; probable glutamate--tRNA ligase, mitochondrial K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D 111671831 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 111673369 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 111673375 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 111671823 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 111645356 pars2; probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 111670177 iars; isoleucine--tRNA ligase, cytoplasmic K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 111645472 iars2; isoleucine--tRNA ligase, mitochondrial isoform X1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 111672099 lars; leucine--tRNA ligase, cytoplasmic K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 111665017 lars2; probable leucine--tRNA ligase, mitochondrial K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 111648178 mars2; methionine--tRNA ligase, mitochondrial K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 111659796 mars; methionine--tRNA ligase, cytoplasmic isoform X1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 111667175 qars; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D 111661477 rars2; probable arginine--tRNA ligase, mitochondrial K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 111664582 rars; arginine--tRNA ligase, cytoplasmic K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 111658359 kars; lysine--tRNA ligase isoform X1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D 111668763 dars; aspartate--tRNA ligase, cytoplasmic K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 111648372 dars2; aspartate--tRNA ligase, mitochondrial K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 111671183 aimp1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1 K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
D 111661069 aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
D 111653591 aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like K15437 AIMP1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1
D 111645886 aimp2; aminoacyl tRNA synthase complex-interacting multifunctional protein 2 isoform X1 K15438 AIMP2; aminoacyl tRNA synthase complex-interacting multifunctional protein 2
D 111648860 eef1e1; eukaryotic translation elongation factor 1 epsilon-1 K15439 EEF1E1; eukaryotic translation elongation factor 1 epsilon-1
C Other AARSs
D 111651581 aars; alanine--tRNA ligase, cytoplasmic K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 111670568 alanine--tRNA ligase, mitochondrial-like K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 111659628 nars; asparagine--tRNA ligase, cytoplasmic isoform X1 K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D 111654757 nars2; probable asparagine--tRNA ligase, mitochondrial K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D 111656262 glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D 111656265 glycine--tRNA ligase-like K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D 111644614 tars; threonine--tRNA ligase, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 111672311 threonine--tRNA ligase, cytoplasmic-like isoform X1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 111652166 threonine--tRNA ligase, cytoplasmic-like isoform X1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 111653222 sars; serine--tRNA ligase, cytoplasmic K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 111654231 sars2; serine--tRNA ligase, mitochondrial K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 111651669 cars; cysteine--tRNA ligase, cytoplasmic isoform X1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 111670263 cars2; probable cysteine--tRNA ligase, mitochondrial K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 111645604 vars2; valine--tRNA ligase, mitochondrial K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 111672473 vars; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 111663587 hars; histidine--tRNA ligase, cytoplasmic isoform X1 K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D 111662507 farsa; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 111669103 fars2; phenylalanine--tRNA ligase, mitochondrial K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 111671293 farsb; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D 111673273 yars; tyrosine--tRNA ligase, cytoplasmic K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 111650333 yars2; tyrosine--tRNA ligase, mitochondrial K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 111649827 wars; tryptophan--tRNA ligase, cytoplasmic K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D 111652097 wars2; tryptophan--tRNA ligase, mitochondrial K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D 111655718 putative D-tyrosyl-tRNA(Tyr) deacylase 2 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 111673565 dtd1; D-aminoacyl-tRNA deacylase 1 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 111659491 dtd2; putative D-tyrosyl-tRNA(Tyr) deacylase 2 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 111672029 aarsd1; alanyl-tRNA editing protein Aarsd1 K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
C AARS associated factors
D 111652093 trnau1ap; tRNA selenocysteine 1-associated protein 1 isoform X1 K25102 TRNAU1AP; tRNA selenocysteine 1-associated protein 1
D 111645263 hint1; histidine triad nucleotide-binding protein 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D 111654927 uncharacterized protein LOC111654927 isoform X1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D 111658041 hint3; histidine triad nucleotide-binding protein 3 K12150 HINT3; adenosine 5'-monophosphoramidase HINT3 [EC:3.9.1.-]
D 111653043 histidine triad nucleotide-binding protein 3-like isoform X1 K12150 HINT3; adenosine 5'-monophosphoramidase HINT3 [EC:3.9.1.-]
D 111653045 histidine triad nucleotide-binding protein 3-like K12150 HINT3; adenosine 5'-monophosphoramidase HINT3 [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
D 111647716 adat1; tRNA-specific adenosine deaminase 1 isoform X1 K15440 TAD1; tRNA-specific adenosine deaminase 1 [EC:3.5.4.34]
D 111647834 adat2; tRNA-specific adenosine deaminase 2 K15441 TAD2; tRNA-specific adenosine deaminase 2 [EC:3.5.4.-]
D 111667392 adat3; probable inactive tRNA-specific adenosine deaminase-like protein 3 K15442 TAD3; tRNA-specific adenosine deaminase 3
C Dihydorouridine synthases
D 111669775 dus1l; tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like K05542 DUS1; tRNA-dihydrouridine synthase 1 [EC:1.3.1.88]
D 111653650 dus2; tRNA-dihydrouridine(20) synthase [NAD(P)+]-like K05543 DUS2; tRNA-dihydrouridine synthase 2 [EC:1.3.1.91]
D 111657650 dus3l; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1 K05544 DUS3; tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
D 111661104 dus4l; tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like K05545 DUS4; tRNA-dihydrouridine synthase 4 [EC:1.3.1.90]
C Methylthiotransferase
D 111673073 cdkal1; threonylcarbamoyladenosine tRNA methylthiotransferase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
C Methyltransferases
D 111657944 trmt1; tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D 111647943 trmt2a; tRNA (uracil-5-)-methyltransferase homolog A K15332 TRMT2A; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
D 111670029 trmt2b; tRNA (uracil(54)-C(5))-methyltransferase homolog K15331 TRMT2B; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D 111659009 tarbp1; probable methyltransferase TARBP1 K15333 TRM3; tRNA guanosine-2'-O-methyltransferase [EC:2.1.1.34]
D 111671483 nsun2; tRNA (cytosine(34)-C(5))-methyltransferase K15335 NSUN2; tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.203]
D 111668276 nsun3; tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial isoform X1 K21969 NSUN3; tRNA (cytosine34-C5)-methyltransferase [EC:2.1.1.-]
D 111665145 nsun6; putative methyltransferase NSUN6 isoform X1 K21971 NSUN6; methyltransferase NSUN6 [EC:2.1.1.-]
D 111651109 trmt5; tRNA (guanine(37)-N1)-methyltransferase isoform X1 K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D 111656291 trmt61b; tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial isoform X1 K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D 111659883 trmt61a; tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D 111672622 trmt6; tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 K03256 TRM6; tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
D 111665050 ftsj1; putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase K14864 FTSJ1; tRNA (cytidine32/guanosine34-2'-O)-methyltransferase [EC:2.1.1.205]
D 111667696 mettl1; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D 111658420 methyltransferase-like protein 2-A K24974 METTL2; tRNA N(3)-methylcytidine methyltransferase METTL2 [EC:2.1.1.-]
D 111669205 mettl6; methyltransferase-like protein 6 K00599 METTL6; tRNA N(3)-methylcytidine methyltransferase METTL6 [EC:2.1.1.-]
D 111651811 alkbh8; alkylated DNA repair protein alkB homolog 8 K10770 ALKBH8; alkylated DNA repair protein alkB homolog 8 [EC:1.14.11.- 2.1.1.229]
D 111647130 trmt10b; tRNA methyltransferase 10 homolog B isoform X1 K15445 TRMT10; tRNA (guanine9-N1)-methyltransferase [EC:2.1.1.221]
D 111667938 trmt10a; tRNA methyltransferase 10 homolog A K15445 TRMT10; tRNA (guanine9-N1)-methyltransferase [EC:2.1.1.221]
D 111658036 trmt11; tRNA (guanine(10)-N2)-methyltransferase homolog K15430 TRM11; tRNA (guanine10-N2)-methyltransferase [EC:2.1.1.214]
D 111668190 trmt13; tRNA:m(4)X modification enzyme TRM13 homolog isoform X1 K15446 TRM13; tRNA:m4X modification enzyme [EC:2.1.1.225]
D 111673460 trmt44; probable tRNA (uracil-O(2)-)-methyltransferase K15447 TRM44; tRNASer (uridine44-2'-O)-methyltransferase [EC:2.1.1.211]
D 111663428 wdr4; tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 isoform X1 K15443 TRM82; tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
D 111673498 multifunctional methyltransferase subunit TRM112-like protein K15448 TRM112; multifunctional methyltransferase subunit TRM112
D 111655806 trmt112; multifunctional methyltransferase subunit TRM112-like protein K15448 TRM112; multifunctional methyltransferase subunit TRM112
D 111669681 trdmt1; tRNA (cytosine(38)-C(5))-methyltransferase isoform X1 K15336 TRDMT1; tRNA (cytosine38-C5)-methyltransferase [EC:2.1.1.204]
D 111671177 trmo; tRNA (adenine(37)-N6)-methyltransferase K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D 111662268 tyw1; S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D 111648183 trmt12; tRNA wybutosine-synthesizing protein 2 homolog K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D 111648354 tyw3; tRNA wybutosine-synthesizing protein 3 homolog K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D 111659552 lcmt2; tRNA wybutosine-synthesizing protein 4 K15451 PPM2; tRNA wybutosine-synthesizing protein 4 [EC:2.1.1.290 2.3.1.231]
D 111657168 tyw5; tRNA wybutosine-synthesizing protein 5 K18066 TYW5; tRNA wybutosine-synthesizing protein 5 [EC:1.14.11.42]
D 111660693 bcdin3d; pre-miRNA 5'-monophosphate methyltransferase K25191 BCDIN3D; RNA 5'-monophosphate methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D 111652976 pus1; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D 111657133 pus3; tRNA pseudouridine(38/39) synthase K01855 PUS3; tRNA pseudouridine38/39 synthase [EC:5.4.99.45]
D 111664282 trub1; probable tRNA pseudouridine synthase 1 K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D 111663628 pus7l; pseudouridylate synthase 7 homolog-like protein isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D 111650450 pus7; pseudouridylate synthase 7 homolog K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D 111659457 pus10; putative tRNA pseudouridine synthase Pus10 K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
D 111660795 mitochondrial RNA pseudouridine synthase rpusd4-like K22538 RPUSD4; mitochondrial RNA pseudouridine synthase RPUSD4 [EC:5.4.99.-]
C Thiolation factors
D 111667344 trmu; mitochondrial tRNA-specific 2-thiouridylase 1 K21027 TRMU; tRNA-5-taurinomethyluridine 2-sulfurtransferase [EC:2.8.1.14]
D 111644911 ctu1; cytoplasmic tRNA 2-thiolation protein 1 K14168 CTU1; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-]
D 111669571 ctu2; cytoplasmic tRNA 2-thiolation protein 2 K14169 CTU2; cytoplasmic tRNA 2-thiolation protein 2
D 111662331 nfs1; cysteine desulfurase, mitochondrial K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D 111666077 urm1; ubiquitin-related modifier 1 K12161 URM1; ubiquitin related modifier 1
D 111657492 mocs3; adenylyltransferase and sulfurtransferase MOCS3 K11996 MOCS3; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11]
C KEOPS/EKC complex
D 111668589 tp53rk; TP53-regulating kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D 111667404 osgepl1; probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D 111654768 osgep; probable tRNA N6-adenosine threonylcarbamoyltransferase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D 111667340 tprkb; EKC/KEOPS complex subunit TPRKB K15901 TPRKB; EKC/KEOPS complex subunit TPRKB/CGI121
D 111664448 lage3; EKC/KEOPS complex subunit LAGE3 K15902 LAGE3; EKC/KEOPS complex subunit LAGE3/PCC1
C Elongator complex
D 111657388 elp1; elongator complex protein 1 K11373 ELP1; elongator complex protein 1
D 111659388 elp2; elongator complex protein 2 isoform X1 K11374 ELP2; elongator complex protein 2
D 111661507 elp3; elongator complex protein 3 K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
D 111645902 elp4; elongator complex protein 4 K11375 ELP4; elongator complex protein 4
D 111650697 elp5; elongator complex protein 5 K11376 ELP5; elongator complex protein 5
D 111644506 elp6; elongator complex protein 6 K11377 ELP6; elongator complex protein 6
C Elongator related proteins
D 111646877 dph3; DPH3 homolog K15455 DPH3; diphthamide biosynthesis protein 3
D 111666926 kti12; protein KTI12 homolog K15456 KTI12; protein KTI12
C Other tRNA modification factors
D 111651140 yrdc; yrdC domain-containing protein, mitochondrial K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D 111673277 trit1; tRNA dimethylallyltransferase isoform X1 K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D 111654874 gtpbp3; tRNA modification GTPase GTPBP3, mitochondrial isoform X1 K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D 111652264 mto1; protein MTO1 homolog, mitochondrial K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D 111653685 qtrt1; queuine tRNA-ribosyltransferase catalytic subunit 1 K00777 QTRT1; queuine tRNA-ribosyltransferase catalytic subunit [EC:2.4.2.64]
D 111662843 qtrt2; queuine tRNA-ribosyltransferase accessory subunit 2 isoform X1 K15407 QTRT2; queuine tRNA-ribosyltransferase accessory subunit
D 111659932 selenide, water dikinase 1-like K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 111671261 sephs1; selenide, water dikinase 1 K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 111651287 thumpd1; THUMP domain-containing protein 1 K06963 TAN1; tRNA acetyltransferase TAN1
D 111664660 thg1l; probable tRNA(His) guanylyltransferase isoform X1 K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79]
D 111659010 ate1; arginyl-tRNA--protein transferase 1 isoform X1 K00685 ATE1; arginyl-tRNA---protein transferase [EC:2.3.2.8]
D 111666393 dalrd3; DALR anticodon-binding domain-containing protein 3 K24973 DALRD3; DALR anticodon-binding domain-containing protein 3
B tRNA degradation factors
C TRAMP complex
D 111673062 non-canonical poly(A) RNA polymerase PAPD7-like isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D 111672298 papd5; non-canonical poly(A) RNA polymerase PAPD5 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D 111671425 papd7; non-canonical poly(A) RNA polymerase PAPD7 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
D 111662743 zinc finger CCHC domain-containing protein 7-like isoform X1 K12597 AIR1_2; protein AIR1/2
D 111664102 zinc finger CCHC domain-containing protein 7-like K12597 AIR1_2; protein AIR1/2
D 111656802 mtrex; superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C Rapid tRNA decay (RTD) pathway factors
D 111652960 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D 111645237 xrn2; 5'-3' exoribonuclease 2 isoform X1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D 111662091 3'(2'),5'-bisphosphate nucleotidase 1-like K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D 111661497 bpnt1; 3'(2'),5'-bisphosphate nucleotidase 1 K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
D 111657182 LOW QUALITY PROTEIN: interferon-induced protein with tetratricopeptide repeats 5-like K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D 111645177 elac1; zinc phosphodiesterase ELAC protein 1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 111655530 elac2; zinc phosphodiesterase ELAC protein 2 isoform X1 K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D 111645945 ribonuclease T2-like K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D 111657425 ribonuclease Oy-like isoform X1 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D 111648065 CCA tRNA nucleotidyltransferase 1, mitochondrial-like K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D 111653184 trnt1; CCA tRNA nucleotidyltransferase 1, mitochondrial K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D 111671047 rtcb; tRNA-splicing ligase RtcB homolog K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D 111672099 lars; leucine--tRNA ligase, cytoplasmic K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 111665017 lars2; probable leucine--tRNA ligase, mitochondrial K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D 111671831 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 111673369 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 111673375 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 111671823 probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D 111645356 pars2; probable proline--tRNA ligase, mitochondrial K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D 111673273 yars; tyrosine--tRNA ligase, cytoplasmic K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 111650333 yars2; tyrosine--tRNA ligase, mitochondrial K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D 111649827 wars; tryptophan--tRNA ligase, cytoplasmic K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D 111652097 wars2; tryptophan--tRNA ligase, mitochondrial K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D 111644614 tars; threonine--tRNA ligase, cytoplasmic K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 111672311 threonine--tRNA ligase, cytoplasmic-like isoform X1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 111652166 threonine--tRNA ligase, cytoplasmic-like isoform X1 K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D 111670177 iars; isoleucine--tRNA ligase, cytoplasmic K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 111645472 iars2; isoleucine--tRNA ligase, mitochondrial isoform X1 K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D 111658359 kars; lysine--tRNA ligase isoform X1 K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D 111651581 aars; alanine--tRNA ligase, cytoplasmic K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 111670568 alanine--tRNA ligase, mitochondrial-like K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D 111645604 vars2; valine--tRNA ligase, mitochondrial K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 111672473 vars; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D 111648178 mars2; methionine--tRNA ligase, mitochondrial K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 111659796 mars; methionine--tRNA ligase, cytoplasmic isoform X1 K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D 111653222 sars; serine--tRNA ligase, cytoplasmic K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 111654231 sars2; serine--tRNA ligase, mitochondrial K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D 111648372 dars2; aspartate--tRNA ligase, mitochondrial K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D 111651669 cars; cysteine--tRNA ligase, cytoplasmic isoform X1 K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 111670263 cars2; probable cysteine--tRNA ligase, mitochondrial K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D 111655540 ears2; probable glutamate--tRNA ligase, mitochondrial K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D 111667175 qars; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D 111661477 rars2; probable arginine--tRNA ligase, mitochondrial K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 111664582 rars; arginine--tRNA ligase, cytoplasmic K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D 111662507 farsa; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 111669103 fars2; phenylalanine--tRNA ligase, mitochondrial K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D 111671293 farsb; phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D 111663587 hars; histidine--tRNA ligase, cytoplasmic isoform X1 K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D 111659628 nars; asparagine--tRNA ligase, cytoplasmic isoform X1 K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D 111654757 nars2; probable asparagine--tRNA ligase, mitochondrial K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D 111655718 putative D-tyrosyl-tRNA(Tyr) deacylase 2 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 111673565 dtd1; D-aminoacyl-tRNA deacylase 1 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 111659491 dtd2; putative D-tyrosyl-tRNA(Tyr) deacylase 2 K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D 111672029 aarsd1; alanyl-tRNA editing protein Aarsd1 K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D 111667696 mettl1; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D 111654874 gtpbp3; tRNA modification GTPase GTPBP3, mitochondrial isoform X1 K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D 111671177 trmo; tRNA (adenine(37)-N6)-methyltransferase K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D 111652976 pus1; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D 111664282 trub1; probable tRNA pseudouridine synthase 1 K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D 111663628 pus7l; pseudouridylate synthase 7 homolog-like protein isoform X1 K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D 111650450 pus7; pseudouridylate synthase 7 homolog K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D 111662331 nfs1; cysteine desulfurase, mitochondrial K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
D 111668589 tp53rk; TP53-regulating kinase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D 111667404 osgepl1; probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D 111654768 osgep; probable tRNA N6-adenosine threonylcarbamoyltransferase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Other tRNA modification factors
D 111652264 mto1; protein MTO1 homolog, mitochondrial K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D 111673277 trit1; tRNA dimethylallyltransferase isoform X1 K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D 111650306 pts; 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D 111652555 6-pyruvoyl tetrahydrobiopterin synthase-like K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D 111659932 selenide, water dikinase 1-like K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 111671261 sephs1; selenide, water dikinase 1 K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D 111651140 yrdc; yrdC domain-containing protein, mitochondrial K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
B tRNA degradation factors
C 111645318 pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024