+E Ribosome biogenesis KO
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Ribosome Biogenesis - Streptomyces avermitilis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SAVERM_2665 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D SAVERM_5260 orn; putative 3'->5' exoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SAVERM_5595 era; putative GTP-binding protein Era/ThdF family K03595 era; GTPase
C SAVERM_5469 obg; putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SAVERM_6131 putative DNA-binding protein K06204 dksA; RNA polymerase-binding transcription factor
C SAVERM_2553 nusA; putative transcriptional termination/antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C SAVERM_6860 nusB; putative transcription termination protein K03625 nusB; transcription antitermination protein NusB
C SAVERM_4909 nusG; putative transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SAVERM_3587 ksgA; putative dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SAVERM_6878 sun; putative RNA-binding Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SAVERM_2670 putative RNA methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SAVERM_5572 sdrD; putative protein involving differentiation K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SAVERM_4310 rsmG; 16S ribosomal RNA small subunit methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SAVERM_6114 mraW; putative S-adenosylmethionine-dependent methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SAVERM_3591 putative tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SAVERM_6496 tlyA; putative cytotoxin/hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D SAVERM_4467 putative rRNA methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SAVERM_77 putative rRNA methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SAVERM_80 putative rRNA methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SAVERM_3966 putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SAVERM_1444 rsmC; putative ribosomal RNA small subunit methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D SAVERM_2621 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SAVERM_6496 tlyA; putative cytotoxin/hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SAVERM_6707 putative ribosomal pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SAVERM_6512 rluB; putative pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SAVERM_6133 rluD; putative pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C SAVERM_4973 putative ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SAVERM_1896 putative acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C SAVERM_3669 rimJ; putative ribosomal-protein-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C SAVERM_2742 putative acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C SAVERM_2642 rimM; putative 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C SAVERM_2508 hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
B rRNA processing factors
C SAVERM_2665 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SAVERM_5465 hypothetical protein K08300 rne; ribonuclease E [EC:3.1.26.12]
C SAVERM_6851 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
B GTPases
C SAVERM_5595 era; putative GTP-binding protein Era/ThdF family K03595 era; GTPase
C SAVERM_2086 engC; putative ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SAVERM_3043 hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SAVERM_6524 engA; putative GTP-binding protein K03977 engA; GTPase
C SAVERM_5469 obg; putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C SAVERM_2470 putative ATP/GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C SAVERM_2910 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SAVERM_6840 relA; ppGpp synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SAVERM_2472 rshA; putative RelA homolog K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SAVERM_2549 rbfA; putative ribosome-binding factor K02834 rbfA; ribosome-binding factor A
C SAVERM_2554 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C SAVERM_5480 hypothetical protein K09710 ybeB; ribosome-associated protein
C SAVERM_5584 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C SAVERM_3207 putative GTP binding protein K06942 ychF; ribosome-binding ATPase
C SAVERM_2667 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024