+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidate division SR1 bacterium RAAC1_SR1_1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D P148_SR1C001G0286 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E P148_SR1C001G0522 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E P148_SR1C001G0417 Helix-hairpin-helix motif:HhH-GPD K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E P148_SR1C001G0505 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D P148_SR1C001G0802 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P148_SR1C001G0819 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P148_SR1C001G0977 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D P148_SR1C001G0286 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E P148_SR1C001G0522 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E P148_SR1C001G0088 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E P148_SR1C001G0417 Helix-hairpin-helix motif:HhH-GPD K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E P148_SR1C001G0505 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E P148_SR1C001G0731 hypothetical protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E P148_SR1C001G0313 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E P148_SR1C001G0378 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E P148_SR1C001G0701 hypothetical protein K03701 uvrA; excinuclease ABC subunit A E P148_SR1C001G0186 hypothetical protein K03702 uvrB; excinuclease ABC subunit B E P148_SR1C001G0632 hypothetical protein K03702 uvrB; excinuclease ABC subunit B E P148_SR1C001G1066 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E P148_SR1C001G0543 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P148_SR1C001G0378 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F P148_SR1C001G0237 hypothetical protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F P148_SR1C001G0238 hypothetical protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F P148_SR1C001G0986 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E P148_SR1C001G0419 hypothetical protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E P148_SR1C001G0592 hypothetical protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E P148_SR1C001G0375 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E P148_SR1C001G0545 hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E P148_SR1C001G0476 hypothetical protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E P148_SR1C001G0848 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E P148_SR1C001G0242 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E P148_SR1C001G1062 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E P148_SR1C001G1052 DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E P148_SR1C001G0378 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E P148_SR1C001G0543 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P148_SR1C001G0852 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E P148_SR1C001G0567 hypothetical protein K03553 recA; recombination protein RecA E P148_SR1C001G0396 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P148_SR1C001G0775 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P148_SR1C001G0407 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E P148_SR1C001G0271 hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E P148_SR1C001G0547 viral A-type inclusion protein K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E P148_SR1C001G0567 hypothetical protein K03553 recA; recombination protein RecA E P148_SR1C001G0520 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E P148_SR1C001G0313 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E P148_SR1C001G0396 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P148_SR1C001G0775 Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P148_SR1C001G0407 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E P148_SR1C001G0547 viral A-type inclusion protein K03546 sbcC; DNA repair protein SbcC/Rad50 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F P148_SR1C001G0431 hypothetical protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F P148_SR1C001G0394 hypothetical protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F P148_SR1C001G1091 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F P148_SR1C001G0622 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F P148_SR1C001G0313 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F P148_SR1C001G0378 hypothetical protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F P148_SR1C001G0701 hypothetical protein K03701 uvrA; excinuclease ABC subunit A F P148_SR1C001G0186 hypothetical protein K03702 uvrB; excinuclease ABC subunit B F P148_SR1C001G0632 hypothetical protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D P148_SR1C001G0567 hypothetical protein K03553 recA; recombination protein RecA D P148_SR1C001G0568 hypothetical protein K01356 lexA; repressor LexA [EC:3.4.21.88] D P148_SR1C001G0852 hypothetical protein K03111 ssb; single-strand DNA-binding protein D P148_SR1C001G0797 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D P148_SR1C001G0834 hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D P148_SR1C001G0802 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P148_SR1C001G0819 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P148_SR1C001G0977 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P148_SR1C001G0821 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D P148_SR1C001G0825 hypothetical protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024