+D
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Transfer RNA Biogenesis - Serratia symbiotica
%
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
D SCc_594 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SCc_317 gltX; glutamyl-tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SCc_223 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SCc_112 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SCc_260 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SCc_537 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SCc_269 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SCc_451 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SCc_192 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SCc_351 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D SCc_167 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SCc_306 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SCc_404 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SCc_517 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SCc_330 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SCc_748 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SCc_560 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SCc_400 pheS; phenylalanyl-tRNA synthetase, a subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SCc_399 pheT; phenylalanyl-tRNA synthetase, b subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SCc_339 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SCc_635 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
C AARS associated factors
D SCc_443 ycfF; purine nucleoside phosphoramidasepurine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D SCc_576 yggH; tRNA(m7G46)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D SCc_492 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SCc_052 truB; tRNA pseudouridine 55 synthetase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D SCc_565 iscS; cysteine desulfurase-NifS-like protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D SCc_074 rimN; putative ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SCc_083 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SCc_761 thdF; GTP-binding protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SCc_772 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D SCc_094 cysQ; CysQ/AmtA K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D SCc_758 rpmH; 50S ribosomal protein L34 K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D SCc_581 drnpB; RNase P K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D SCc_383 rnt; exoribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D SCc_026 rph; rph, ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D SCc_359 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
C CCA adding factors
D SCc_594 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SCc_260 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SCc_223 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D SCc_339 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SCc_635 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SCc_404 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SCc_112 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SCc_192 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SCc_167 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SCc_748 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SCc_537 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SCc_517 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SCc_351 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SCc_024 glyQ; glycyl-tRNA synthetase a subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SCc_023 glyS; glycyl-tRNA synthetase, b subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SCc_330 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SCc_317 gltX; glutamyl-tRNA synthetase, catalytic subunit K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SCc_269 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SCc_451 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SCc_400 pheS; phenylalanyl-tRNA synthetase, a subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SCc_399 pheT; phenylalanyl-tRNA synthetase, b subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SCc_560 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SCc_306 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
B tRNA modification factors
C Deaminases
D SCc_571 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D SCc_707 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
C Methylthiotransferases
C Methyltransferases
D SCc_350 cmoA; tRNA cmo(5)U34 methyltransferase, SAM-dependent K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D SCc_349 cmoB; tRNA mo(5)U34 methyltransferase, SAM-dependent K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D SCc_576 yggH; tRNA(m7G46)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SCc_175 trmD; tRNA (guanine-n1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D SCc_761 thdF; GTP-binding protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SCc_566 trmJ; tRNA/rRNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
C Psudouridine synthases
D SCc_492 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SCc_052 truB; tRNA pseudouridine 55 synthetase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D SCc_408 trmU; tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SCc_688 sirA; tRNA 2-thiouridine synthesizing protein A K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SCc_643 yheL; sulfur transfer protein complex, TusB subunit K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D SCc_642 yheM; sulfur transfer protein complex, TusC subunit K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D SCc_641 yheN; sulfur transfer protein complex, TusD subunit K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D SCc_319 yccK; putative membrane protein, putative sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D SCc_565 iscS; cysteine desulfurase-NifS-like protein K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SCc_190 ygfZ; putative folate-dependent regulatory protein involved in one-carbon metabolism K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D SCc_772 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SCc_083 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SCc_285 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D SCc_153 ygcM; putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D SCc_152 hypothetical protein, radical SAM superfamily K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D SCc_588 yqcD; 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D SCc_464 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SCc_221 mesJ; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D SCc_355 yeaZ; putative glycoprotein endopeptidase, M22 peptidase-like protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D SCc_074 rimN; putative ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SCc_593 gcp; putative O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D SCc_081 yjeE; ATPase with strong ADP affinity K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C SCc_088 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C SCc_050 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024