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Transfer RNA Biogenesis - Streptococcus salivarius JIM8777
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D SALIVA_0861 rnz; ribonuclease Z (RNase Z) (tRNAse Z) (tRNA 3 endonuclease) K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D SALIVA_0399 cca; CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SALIVA_0199 proS; prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SALIVA_0796 isoleucyl-tRNA synthetase (isoleucine--tRNA ligase) (IleRS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SALIVA_0214 leuS; leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SALIVA_0427 metG; methionyl-tRNA synthetase (methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SALIVA_0059 argS; arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SALIVA_0741 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SALIVA_2016 aspS; aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D SALIVA_0441 alaS; alanyl-tRNA synthetase (alanine--tRNA ligase) (AlaRS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SALIVA_1224 asnS; asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SALIVA_0580 thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) (ThrRS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SALIVA_0301 serS; seryl-tRNA synthetase (seryl-tRNA(Ser/Sec) synthetase) (serine--tRNA ligase) (SerRS) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SALIVA_0106 cysS; cysteine--tRNA ligase (Cysteinyl-tRNA synthetase) (CysRS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SALIVA_0459 valS; valyl-tRNA synthetase (valine--tRNA ligase) (valRS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SALIVA_2018 hisS; histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SALIVA_1287 pheS; phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SALIVA_1285 pheT; phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SALIVA_1938 tyrS1; Tyrosyl-tRNA synthetase 1 (Tyrosine--tRNA ligase 1) (TyrRS 1) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SALIVA_2076 trpS; tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D SALIVA_0162 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D SALIVA_1675 hit; cell cycle regulation histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D SALIVA_1671 trmB; tRNA (guanine-N(7)-)-methyltransferase (tRNA(m7G46)-methyltransferase) K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D SALIVA_0135 truA; tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SALIVA_1102 truB; tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D SALIVA_0388 iscS; putative cysteine desulfurase (NifS protein homolog) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SALIVA_1525 putative cysteine desulfurase (NifS protein homolog) (Aminotransferase (Class V)) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D SALIVA_1261 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SALIVA_0961 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SALIVA_1111 trmE; tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SALIVA_2060 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA (Glucose-inhibited division protein A) K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D SALIVA_1879 rnpA; ribonuclease P protein component (RNaseP protein) (RNase P protein) (Protein C5) K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D SALIVA_0861 rnz; ribonuclease Z (RNase Z) (tRNAse Z) (tRNA 3 endonuclease) K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D SALIVA_0399 cca; CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D SALIVA_0214 leuS; leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS) K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SALIVA_0199 proS; prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D SALIVA_1938 tyrS1; Tyrosyl-tRNA synthetase 1 (Tyrosine--tRNA ligase 1) (TyrRS 1) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SALIVA_2076 trpS; tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SALIVA_0580 thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) (ThrRS) K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SALIVA_0796 isoleucyl-tRNA synthetase (isoleucine--tRNA ligase) (IleRS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SALIVA_0741 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SALIVA_0441 alaS; alanyl-tRNA synthetase (alanine--tRNA ligase) (AlaRS) K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SALIVA_0459 valS; valyl-tRNA synthetase (valine--tRNA ligase) (valRS) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SALIVA_0427 metG; methionyl-tRNA synthetase (methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SALIVA_0301 serS; seryl-tRNA synthetase (seryl-tRNA(Ser/Sec) synthetase) (serine--tRNA ligase) (SerRS) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SALIVA_2016 aspS; aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SALIVA_0490 glyQ; glycyl-tRNA synthetase alpha subunit (glycine--tRNA ligase alpha subunit) (GlyRS) K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SALIVA_0491 glyS; glycyl-tRNA synthetase beta subunit (glycine--tRNA ligase beta subunit) (GlyRS) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SALIVA_0106 cysS; cysteine--tRNA ligase (Cysteinyl-tRNA synthetase) (CysRS) K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SALIVA_0059 argS; arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SALIVA_1287 pheS; phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS) K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SALIVA_1285 pheT; phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain) (PheRS) K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SALIVA_2018 hisS; histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SALIVA_1224 asnS; asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SALIVA_1888 gltX; glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
C Trans-editing factors
D SALIVA_0162 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D SALIVA_0747 transcriptional regulator K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D SALIVA_1913 yaaJ; putative cytidine/deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D SALIVA_0184 dus1; putative tRNA-dihydrouridine synthase 1 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
C Methyltransferases
D SALIVA_1178 gid; tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D SALIVA_1671 trmB; tRNA (guanine-N(7)-)-methyltransferase (tRNA(m7G46)-methyltransferase) K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SALIVA_1492 trmD; tRNA (guanine-N(1)-)-methyltransferase (M1G-methyltransferase) (tRNA [GM37] methyltransferase) K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D SALIVA_1111 trmE; tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SALIVA_0822 hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D SALIVA_0263 yibK; uncharacterized tRNA/rRNA methyltransferase yibK K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D SALIVA_0245 spoU; rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D SALIVA_0135 truA; tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SALIVA_1102 truB; tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D SALIVA_2062 trmU; putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SALIVA_0388 iscS; putative cysteine desulfurase (NifS protein homolog) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SALIVA_1525 putative cysteine desulfurase (NifS protein homolog) (Aminotransferase (Class V)) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Other tRNA modification factors
D SALIVA_2060 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA (Glucose-inhibited division protein A) K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SALIVA_0961 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SALIVA_0546 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (queuosine biosynthesis protein queA) K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D SALIVA_1220 queC; queuosine biosynthesis protein queC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D SALIVA_1219 ptpS; 6-pyruvoyl tetrahydrobiopterin synthase,putative K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D SALIVA_1218 pyruvate-formate lyase-activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D SALIVA_1217 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase (7-cyano-7-carbaguanine reductase) (PreQ(0) reductase) (NADPH-dependent nitrile oxidoreductase) K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D SALIVA_1000 hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D SALIVA_1873 tgt; queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme) K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SALIVA_0389 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SALIVA_0011 tilS; tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D SALIVA_1842 glycoprotein endopeptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D SALIVA_1261 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SALIVA_1840 gcp; putative O-sialoglycoprotein endopeptidase (Glycoprotease) K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D SALIVA_0313 uncharacterized conserved protein, putative ATPase or kinase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D SALIVA_1684 uncharacterized conserved protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
B tRNA degradation factors
C SALIVA_0636 rnr1; exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C SALIVA_0101 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024