+E	Transcription factors	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Factors - Salinispora tropica</h2>
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A<b>Eukaryotic type</b>
B  Basic leucine zipper (bZIP)
C    AP-1(-like) components, Jun
C    AP-1(-like) components, Fos
C    AP-1(-like) components, Maf
C    AP-1(-like) components, NF-E2
C    AP-1(-like) components, Fungal regulators
C    AP-1(-like) components, CRE-BP/ATF
C    CREB
C    C/EBP-like factors
C    bZIP/PAR
C    Plant bZIP factors
C    ZIP only
B  Basic helix-loop-helix (bHLH)
C    Ubiquitous (class A) factors
C    Myogenic transcription factors
C    Achaete-Scute
C    Tal/Twist/Atonal/Hen, Lymphoid factors
C    Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C    Tal/Twist/Atonal/Hen, HEN
C    Tal/Twist/Atonal/Hen, Mesp
C    Tal/Twist/Atonal/Hen, Atonal
C    Tal/Twist/Atonal/Hen, Pancreatic factors
C    Hairy, Hairy/E(SPL)
C    Hairy, Fungal regulators
C    Factors with PAS domain
C    Yabby
C    INO
C    HLH domain only
B  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C    Ubiquitous bHLH-ZIP factors
C    Cell cycle controlling factors, Myc
C    Cell cycle controlling factors, Mad/Max
C    Other bHLH-ZIP factors
B  Other basic domains
C    NF-1
C    RF-X
C    AP-2 (bHSH)
B  Zinc finger
C    Cys4 thyroid hormone receptor-like
C    Cys4 hepatocyte nuclear factor 4-like
C    Cys4 estrogen receptor-like
C    Cys4 nerve growth factor IB-like
C    Cys4 Fushi tarazu-F1-like
C    Cys4 germ cell nuclear factor
C    Cys4 Knirps/DAX1-like
C    Cys4 GATA-factors
C    Cys2His2 SP/KLF family and related proteins
C    Cys2His2 GLI-like
C    Cys2His2 Snail
C    Cys2His2 BTB-ZF factors
C    Cys2His2 BED
C    Cys2His2 PRDM
C    Cys2His2 metabolic regulators in fungi
C    Cys2His2 others
C    Cys2HisCys zinc factors
C    Cys3His zinc factors
C    Cys2CysHis zinc factors
C    CXXC CpG-binding proteins
D      Strop_0568 DNA-cytosine methyltransferase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
D      Strop_0061 C-5 cytosine-specific DNA methylase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
C    Cys6 metabolic regulators in fungi
C    Other zinc fingers
B  Helix-turn-helix
C    Homeo domain ANTP: HOXL
C    Homeo domain ANTP: NKL
C    Homeo domain Paired-related
C    Homeo domain LIM
C    Homeo domain POU
C    Homeo domain SINE
C    Homeo domain ZF
C    Homeo domain CUT
C    Homeo domain PROS
C    Homeo domain TALE
C    Homeo domain other
C    Fork head/winged helix developmental regulators
C    Fork head/winged helix tissue-specific regulators
C    Fork head/winged helix cell cycle-controlling factors, E2F
C    Fork head/winged helix cell cycle-controlling factors, DP
C    Fork head/winged helix other regulators
C    Heat shock factors
C    Tryptophan clusters Myb, Myb-factors
C    Tryptophan clusters Myb, Myb-like factors
C    Tryptophan clusters Ets-type
C    Tryptophan clusters interferon-regulating factors
C    TEA domain
C    ARID
B  beta-Scaffold factors with minor groove contacts
C    RHR (Rel homology region) Rel/Ankyrin
C    RHR (Rel homology region) Ankyrin only
C    RHR (Rel homology region) NF-AT
C    STAT
C    p53
C    MADS-box regulators of differentiation, MEF-2
C    MADS-box regulators of differentiation, Homeotic genes
C    MADS-box regulators of differentiation, Yeast regulators
C    MADS-box responders to external signals
C    SAND domain-containing proteins
C    TATA-binding proteins
C    HMG SOX
C    HMG TCF-1
C    HMG2-related
C    UBF
C    Other HMG box factors
C    Heteromeric CCAAT factors
C    Grainyhead
C    Cold-shock domain factors, DbpA-like
C    Cold-shock domain factors, YB-1/DbpB-like
C    Cold-shock domain factors, FRG Y2-like
C    Runt
C    MYRF
B  Other transcription factors
C    HMGI(Y)
C    NUPR
E        Line #4
C    Pocket domain Rb
C    Pocket domain CBP
C    T-box
C    DMRT
C    LRRFIP
C    TCP
C    AP2/ERF
C    WRKY
C    LOB
C    Copper-fist proteins fungal regulators
C    Others
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A<b>Prokaryotic type</b>
B  Helix-turn-helix
C    AraC family
D      Strop_3344 transcriptional regulator, AraC family	K13653 K13653; AraC family transcriptional regulator 
D      Strop_0610 transcriptional regulator, AraC family	K07506 K07506; AraC family transcriptional regulator 
D      Strop_0600 transcriptional regulator, AraC family	K07506 K07506; AraC family transcriptional regulator 
D      Strop_2057 transcriptional regulator, AraC family	K07506 K07506; AraC family transcriptional regulator 
D      Strop_2180 transcriptional regulator, AraC family	K07506 K07506; AraC family transcriptional regulator 
D      Strop_2693 transcriptional regulator, AraC family	K07506 K07506; AraC family transcriptional regulator 
D      Strop_3783 DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada	K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
D      Strop_2875 transcriptional regulator, AraC family with amidase-like domain	K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA 
C    LysR family
C    DeoR family
D      Strop_0248 transcriptional regulator, DeoR family	K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor 
C    LacI family
D      Strop_3259 transcriptional regulator, LacI family	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
C    GntR family
D      Strop_2009 transcriptional regulator, GntR family	K03710 K03710; GntR family transcriptional regulator 
D      Strop_0144 UbiC transcription regulator-associated domain protein	K03710 K03710; GntR family transcriptional regulator 
D      Strop_2169 transcriptional regulator, GntR family	K03710 K03710; GntR family transcriptional regulator 
C    TetR/AcrR family
D      Strop_1167 regulatory protein, TetR	K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein 
D      Strop_4358 regulatory protein, TetR	K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon 
D      Strop_3066 transcriptional regulator, TetR family	K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase 
D      Strop_2625 transcriptional regulator, TetR family	K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
D      Strop_2601 regulatory protein, TetR	K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator 
D      Strop_0261 transcriptional regulator, TetR family	K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity 
C    Lrp/AsnC family
D      Strop_0951 transcriptional regulator, AsnC family	K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 
D      Strop_2275 transcriptional regulator, AsnC family	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      Strop_2259 transcriptional regulator, AsnC family	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      Strop_3532 transcriptional regulator, AsnC family	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      Strop_0657 transcriptional regulator, AsnC family	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      Strop_4090 transcriptional regulator, AsnC family	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
C    LuxR family
D      Strop_3393 regulatory protein, LuxR	K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein 
C    MarR family
D      Strop_3189 regulatory protein, MarR	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
C    MerR family
D      Strop_1645 regulatory protein, MerR	K19591 cueR; MerR family transcriptional regulator, copper efflux regulator 
D      Strop_1494 redox-sensitive transcriptional activator SoxR	K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR 
D      Strop_4471 redox-sensitive transcriptional activator SoxR	K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR 
D      Strop_0116 putative transcriptional regulator, MerR family	K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR 
D      Strop_1079 transcriptional regulator	K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator 
D      Strop_4437 regulatory protein, MerR	K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator 
C    Fur family
D      Strop_2543 zinc uptake regulator, Fur family	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      Strop_0312 nickel uptake regulator, Fur family	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      Strop_2859 ferric-uptake regulator	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      Strop_2053 ferric-uptake regulator	K22297 furA; Fur family transcriptional regulator, stress-responsive regulator 
D      Strop_0738 ferric uptake regulator, Fur family	K22297 furA; Fur family transcriptional regulator, stress-responsive regulator 
C    IclR family
C    CRP/FNR family
D      Strop_4322 cyclic nucleotide-binding	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
D      Strop_1659 cyclic nucleotide-binding	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
D      Strop_3269 transcriptional regulator, Crp/Fnr family	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
C    Rrf2 family
C    ArsR family
D      Strop_2011 transcriptional regulator, ArsR family	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor 
D      Strop_2949 transcriptional regulator, ArsR family	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor 
D      Strop_1675 transcriptional regulator, ArsR family	K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor 
D      Strop_3440 transcriptional regulator, ArsR family	K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor 
D      Strop_3509 transcriptional regulator, ArsR family	K07721 K07721; ArsR family transcriptional regulator 
C    XRE family
D      Strop_1399 helix-turn-helix domain protein	K27043 clgR; XRE family transcriptional regulator, stress-response regulator 
C    PadR family
D      Strop_0895 transcriptional regulator, PadR family	K10947 K10947; PadR family transcriptional regulator 
C    Other families
D      Strop_1456 iron dependent repressor	K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor 
D      Strop_0825 Penicillinase repressor	K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor 
D      Strop_0857 biotin--acetyl-CoA-carboxylase ligase	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      Strop_0355 CoA-binding domain protein	K01926 rex; redox-sensing transcriptional repressor 
D      Strop_2282 hypothetical protein	K27097 espR; ESX-1-secreted protein regulator 
D      Strop_4197 hypothetical protein	K27097 espR; ESX-1-secreted protein regulator 
D      Strop_2751 transcriptional regulator-like protein	K07727 K07727; putative transcriptional regulator 
D      Strop_3164 helix-turn-helix domain protein	K07729 K07729; putative transcriptional regulator 
B  Ribbon-helix-helix
C    CopG family
C    Other families
B  Other transcription factors
C    BglG family
C    Others
D      Strop_3701 transcription factor WhiB	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      Strop_4353 transcription factor WhiB	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      Strop_0947 transcription factor WhiB	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      Strop_3716 transcription factor WhiB	K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      Strop_3737 transcription factor WhiB	K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator 
D      Strop_0445 protein of unknown function DUF156	K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor 
D      Strop_3007 transcriptional regulator, CdaR family	K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein 
D      Strop_2178 transcriptional activator domain	K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon 
D      Strop_4586 chromosome segregation DNA-binding protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      Strop_4262 transcriptional regulator, CarD family	K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription 
D      Strop_1893 transcriptional regulator, ArgR family	K03402 argR; transcriptional regulator of arginine metabolism 
D      Strop_3456 heat-inducible transcription repressor HrcA	K03705 hrcA; heat-inducible transcriptional repressor 
D      Strop_4273 amino acid-binding ACT domain protein	K03567 gcvR; glycine cleavage system transcriptional repressor 
D      Strop_0708 transcriptional regulator, PaaX family	K02616 paaX; phenylacetic acid degradation operon negative regulatory protein 
D      Strop_1852 phosphoribosyltransferase	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] 
D      Strop_0987 protein of unknown function DUF179	K07735 algH; putative transcriptional regulator 
D      Strop_3203 zinc finger, DksA/TraR C4-type	K06204 dksA; RNA polymerase-binding transcription factor 
D      Strop_2148 zinc finger, DksA/TraR C4-type	K06204 dksA; RNA polymerase-binding transcription factor 
D      Strop_1452 ATP-cone domain protein	K07738 nrdR; transcriptional repressor NrdR 
D      Strop_3221 MraZ protein	K03925 mraZ; transcriptional regulator MraZ 
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#<hr>
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#Last updated: May 8, 2024
#<br>Classification taken and modified from <a href="http://www.gene-regulation.com/pub/databases.html#transfac">TRANSFAC 7.0</a>