+E Transcription factors KO #

  Transcription Factors - Sphingobium sp. YBL2

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D TZ53_13160 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D TZ53_25460 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D TZ53_18525 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D TZ53_18615 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D TZ53_21120 hypothetical protein K07506 K07506; AraC family transcriptional regulator D TZ53_17990 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D TZ53_18055 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D TZ53_14695 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D TZ53_03275 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TZ53_16330 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TZ53_16460 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TZ53_20150 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D TZ53_05160 cysB; CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D TZ53_00535 hypothetical protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D TZ53_07220 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D TZ53_09395 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D TZ53_09000 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D TZ53_23900 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family C LacI family D TZ53_02855 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D TZ53_07055 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D TZ53_09720 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D TZ53_09870 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D TZ53_20755 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D TZ53_05085 LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D TZ53_08120 GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D TZ53_09765 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D TZ53_18585 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D TZ53_13860 TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D TZ53_08330 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TZ53_06495 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TZ53_06065 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TZ53_19805 transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon D TZ53_09310 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator D TZ53_21440 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D TZ53_07310 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TZ53_20750 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TZ53_19510 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D TZ53_22580 LuxR family transcriptional regulator K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR C MarR family D TZ53_03485 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D TZ53_16380 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D TZ53_24115 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D TZ53_16920 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D TZ53_23010 transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D TZ53_25290 transcriptional regulator MerD K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D TZ53_23205 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D TZ53_23350 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D TZ53_19845 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D TZ53_20200 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D TZ53_09345 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor C CRP/FNR family D TZ53_21875 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TZ53_07810 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D TZ53_13020 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family C ArsR family D TZ53_01735 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D TZ53_17810 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D TZ53_22805 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D TZ53_19035 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D TZ53_11720 DNA-binding protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D TZ53_01115 XRE family transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D TZ53_01075 CopY family transcriptional repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D TZ53_20515 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] B Ribbon-helix-helix C CopG family D TZ53_06915 CopG family transcriptional regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D TZ53_07765 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D TZ53_10655 transcriptional regulator K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon D TZ53_10065 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D TZ53_04745 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_08250 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_08300 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_04275 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_23545 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_22345 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_17860 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_22725 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_24670 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_24725 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_22825 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_22895 replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TZ53_13875 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D TZ53_22150 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor D TZ53_03425 ATPase AAA K03974 pspF; psp operon transcriptional activator D TZ53_03410 phage-shock protein K03973 pspC; phage shock protein C D TZ53_02800 stress-responsive transcriptional regulator K03973 pspC; phage shock protein C D TZ53_23835 elongation factor GreAB K06140 rnk; regulator of nucleoside diphosphate kinase D TZ53_13115 hypothetical protein K07733 alpA; prophage regulatory protein D TZ53_17510 hypothetical protein K07733 alpA; prophage regulatory protein D TZ53_15405 hypothetical protein K07734 paiB; transcriptional regulator D TZ53_18915 hypothetical protein K07735 algH; putative transcriptional regulator D TZ53_20860 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor D TZ53_17195 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D TZ53_04235 transcriptional regulator K14414 rtcR; transcriptional regulatory protein RtcR D TZ53_00970 MraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0