+E Transcription factors KO
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Transcription Factors - Sphingobium sp. YBL2
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D TZ53_13160 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D TZ53_25460 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D TZ53_18525 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D TZ53_18615 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D TZ53_21120 hypothetical protein K07506 K07506; AraC family transcriptional regulator
D TZ53_17990 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D TZ53_18055 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D TZ53_14695 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D TZ53_03275 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D TZ53_16330 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D TZ53_16460 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D TZ53_20150 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D TZ53_05160 cysB; CysB family transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D TZ53_00535 hypothetical protein K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D TZ53_07220 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D TZ53_09395 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D TZ53_09000 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D TZ53_23900 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
C LacI family
D TZ53_02855 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TZ53_07055 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TZ53_09720 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TZ53_09870 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TZ53_20755 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D TZ53_05085 LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D TZ53_08120 GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D TZ53_09765 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D TZ53_18585 TetR family transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D TZ53_13860 TetR family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D TZ53_08330 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D TZ53_06495 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D TZ53_06065 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D TZ53_19805 transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D TZ53_09310 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D TZ53_21440 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D TZ53_07310 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D TZ53_20750 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D TZ53_19510 AsnC family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D TZ53_22580 LuxR family transcriptional regulator K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
C MarR family
D TZ53_03485 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D TZ53_16380 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D TZ53_24115 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D TZ53_16920 MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D TZ53_23010 transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D TZ53_25290 transcriptional regulator MerD K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D TZ53_23205 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D TZ53_23350 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
C Fur family
D TZ53_19845 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D TZ53_20200 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D TZ53_09345 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D TZ53_21875 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D TZ53_07810 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D TZ53_13020 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
C ArsR family
D TZ53_01735 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D TZ53_17810 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D TZ53_22805 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D TZ53_19035 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D TZ53_11720 DNA-binding protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D TZ53_01115 XRE family transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D TZ53_01075 CopY family transcriptional repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D TZ53_20515 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
B Ribbon-helix-helix
C CopG family
D TZ53_06915 CopG family transcriptional regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D TZ53_07765 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D TZ53_10655 transcriptional regulator K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D TZ53_10065 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D TZ53_04745 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_08250 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_08300 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_04275 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_23545 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_22345 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_17860 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_22725 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_24670 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_24725 chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_22825 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_22895 replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D TZ53_13875 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D TZ53_22150 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D TZ53_03425 ATPase AAA K03974 pspF; psp operon transcriptional activator
D TZ53_03410 phage-shock protein K03973 pspC; phage shock protein C
D TZ53_02800 stress-responsive transcriptional regulator K03973 pspC; phage shock protein C
D TZ53_23835 elongation factor GreAB K06140 rnk; regulator of nucleoside diphosphate kinase
D TZ53_13115 hypothetical protein K07733 alpA; prophage regulatory protein
D TZ53_17510 hypothetical protein K07733 alpA; prophage regulatory protein
D TZ53_15405 hypothetical protein K07734 paiB; transcriptional regulator
D TZ53_18915 hypothetical protein K07735 algH; putative transcriptional regulator
D TZ53_20860 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D TZ53_17195 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D TZ53_04235 transcriptional regulator K14414 rtcR; transcriptional regulatory protein RtcR
D TZ53_00970 MraZ protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0