+D GENES KO #

  KEGG Orthology (KO) - Tistrella mobilis

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tmo00010] D TMO_1348 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D TMO_2886 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TMO_1942 ywjI; fructose 1,6-bisphosphatase II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D TMO_0881 fbaB; fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D TMO_1750 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TMO_0884 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TMO_0883 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TMO_2020 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TMO_2974 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D TMO_1746 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TMO_1896 ttuE; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D TMO_c0793 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TMO_c0266 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TMO_1662 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TMO_b0341 aceE; Pyruvate dehydrogenase (acetyl-transferring) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D TMO_1717 pdhA; 2-dehydro-3-deoxyphosphooctonate aldolase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D TMO_1716 pdhB; Pyruvate dehydrogenase E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D TMO_1715 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D TMO_c0853 acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3459 alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D TMO_2931 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_1503 adhA; zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_b0416 alcohol dehydrogenase protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_1069 acoD; acetaldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D TMO_0095 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_a0524 acetyl-CoA synthetase/AMP-(fatty) acid ligase FadDx K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0622 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0846 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_1574 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_b0292 hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D TMO_3263 CoA-binding protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D TMO_a0249 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] C 00020 Citrate cycle (TCA cycle) [PATH:tmo00020] D TMO_0010 citA; Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D TMO_3028 gltA; citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D TMO_3061 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D TMO_1136 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D TMO_c0507 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D TMO_3006 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D TMO_3005 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3007 sucD; Succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D TMO_3008 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D TMO_a0434 putative acetyl-CoA hydrolase/transferase family protein, putative succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D TMO_3275 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D TMO_3276 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D TMO_3273 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D TMO_3274 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D TMO_0081 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D TMO_3009 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D TMO_b0341 aceE; Pyruvate dehydrogenase (acetyl-transferring) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D TMO_1717 pdhA; 2-dehydro-3-deoxyphosphooctonate aldolase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D TMO_1716 pdhB; Pyruvate dehydrogenase E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D TMO_1715 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D TMO_c0853 acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:tmo00030] D TMO_2886 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TMO_0102 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D TMO_0886 cbbT; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D TMO_2990 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D TMO_1826 ywlF; ribose 5-phosphate isomerase RpiB K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D TMO_0582 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D TMO_3379 Sugar kinase, ribokinase family K00852 rbsK; ribokinase [EC:2.7.1.15] D TMO_2095 guanylate kinase K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D TMO_0309 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TMO_1900 sldA; glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2] D TMO_a0334 glucose dehydrogenase K00117 gcd; quinoprotein glucose dehydrogenase [EC:1.1.5.2] D TMO_2465 gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D TMO_1906 SMP-30/Gluconolaconase/LRE domain-containing protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D TMO_c0269 Gluconate 2-dehydrogenase (acceptor) K06151 E1.1.99.3A; gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3] D TMO_c0268 Gluconate 2-dehydrogenase subunit 3 K06152 E1.1.99.3G; gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3] D TMO_c0319 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D TMO_0881 fbaB; fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D TMO_1942 ywjI; fructose 1,6-bisphosphatase II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] C 00040 Pentose and glucuronate interconversions [PATH:tmo00040] D TMO_0578 rkpK; putative UDP glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D TMO_0577 exoN; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D TMO_1295 L-xylulose kinase protein K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D TMO_0102 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D TMO_a0251 aldH; dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D TMO_b0354 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:tmo00051] D TMO_2561 putative kinase (mak-like)/transcriptional regulator, actin-like ATPase domain (NagC/XylR (ROK) familiy) K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D TMO_0715 algA; GDP-mannose pyrophosphorylase EpsQ K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D TMO_0579 exoC; phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D TMO_b0354 class II aldolase/adducin family protein K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D TMO_1942 ywjI; fructose 1,6-bisphosphatase II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D TMO_0421 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D TMO_0881 fbaB; fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D TMO_1750 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TMO_1826 ywlF; ribose 5-phosphate isomerase RpiB K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D TMO_0422 fruA; PTS system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D TMO_0172 manX; PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] C 00052 Galactose metabolism [PATH:tmo00052] D TMO_a0249 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D TMO_0707 hldD; NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D TMO_0577 exoN; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D TMO_1348 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D TMO_a0253 putative d-galactose 1-dehydrogenase protein K00035 gal; D-galactose 1-dehydrogenase [EC:1.1.1.48] D TMO_3367 dgoK; 2-dehydro-3-deoxygalactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D TMO_3368 dgoA; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] D TMO_c0636 aglA; putative alpha-glucosidase AglA K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:tmo00053] D TMO_0578 rkpK; putative UDP glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D TMO_2465 gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D TMO_1906 SMP-30/Gluconolaconase/LRE domain-containing protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D TMO_0709 capI; NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D TMO_1295 L-xylulose kinase protein K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_a0254 ilvD; dihydroxy-acid dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25] D TMO_a0251 aldH; dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] C 00500 Starch and sucrose metabolism [PATH:tmo00500] D TMO_c0636 aglA; putative alpha-glucosidase AglA K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D TMO_0577 exoN; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D TMO_a0377 gluA; cellobiase CelA precursor K05349 bglX; beta-glucosidase [EC:3.2.1.21] D TMO_1084 bcsA; putative cellulose synthase catalytic subunit K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D TMO_0713 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D TMO_a0213 glycogen branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D TMO_a0214 treS; trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1] D TMO_a0211 malQ; glycoside hydrolase family protein K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D TMO_a0215 aam1; alpha amylase catalytic region K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16] D TMO_a0212 glgX; glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68] D TMO_a0107 treY; malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15] D TMO_a0220 otsA; alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D TMO_a0219 otsB; trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D TMO_1348 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D TMO_2886 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TMO_2561 putative kinase (mak-like)/transcriptional regulator, actin-like ATPase domain (NagC/XylR (ROK) familiy) K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tmo00520] D TMO_1510 nagZ; Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D TMO_2561 putative kinase (mak-like)/transcriptional regulator, actin-like ATPase domain (NagC/XylR (ROK) familiy) K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D TMO_2313 glmS; glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TMO_0913 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D TMO_2541 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D TMO_c0678 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D TMO_3245 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D TMO_3244 nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D TMO_1000 murA; UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TMO_c0239 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TMO_0710 capL; UDP-N-acetyl-D-mannosaminuronate dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D TMO_a0319 NAD-dependent epimerase/dehydratase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D TMO_1348 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D TMO_0577 exoN; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D TMO_1166 dtdp-glucose 4,6-dehydratase K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] D TMO_0706 MUM4 (mucilage-modified 4) K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] D TMO_0578 rkpK; putative UDP glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D TMO_0707 hldD; NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D TMO_0709 capI; NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D TMO_0172 manX; PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D TMO_2886 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TMO_0579 exoC; phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D TMO_0715 algA; GDP-mannose pyrophosphorylase EpsQ K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D TMO_0713 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D TMO_a0325 rfbE; NAD-dependent epimerase/dehydratase K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10] C 00620 Pyruvate metabolism [PATH:tmo00620] D TMO_0095 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_a0524 acetyl-CoA synthetase/AMP-(fatty) acid ligase FadDx K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0622 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0846 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_1574 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_b0341 aceE; Pyruvate dehydrogenase (acetyl-transferring) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D TMO_1717 pdhA; 2-dehydro-3-deoxyphosphooctonate aldolase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D TMO_1716 pdhB; Pyruvate dehydrogenase E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D TMO_1715 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D TMO_c0853 acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0122 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D TMO_2931 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_1503 adhA; zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_b0416 alcohol dehydrogenase protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_3459 alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D TMO_2568 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TMO_2569 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TMO_1896 ttuE; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D TMO_0351 accA; Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D TMO_c0732 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D TMO_1152 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D TMO_c0823 biotin/lipoyl attachment domain-containing protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D TMO_c0733 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D TMO_1151 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D TMO_3236 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D TMO_2596 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_1069 acoD; acetaldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D TMO_a0434 putative acetyl-CoA hydrolase/transferase family protein, putative succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D TMO_b0292 hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D TMO_3263 CoA-binding protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D TMO_0463 FMN-dependent alpha-hydroxy acid dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D TMO_b0156 ydaP; thiamine pyrophosphate protein domain protein TPP-binding protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D TMO_c0193 D-lactate dehydrogenase K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D TMO_b0516 Lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D TMO_b0203 glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D TMO_a0393 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D TMO_2689 glyoxalase/bleomycin resistance protein/dioxygenase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D TMO_0149 gloB; metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D TMO_0274 ghrA; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D TMO_1177 ghrA; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D TMO_b0269 ghrA; putative 2-hydroxyacid dehydrogenase family protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D TMO_2592 maeB; malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D TMO_3502 malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D TMO_3009 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D TMO_0081 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D TMO_0414 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D TMO_c0793 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TMO_c0266 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TMO_1662 ppdK; Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_0013 pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D TMO_2294 alpha-isopropylmalate/homocitrate synthase family transferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D TMO_0760 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D TMO_1017 leuA; pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D TMO_b0581 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D TMO_c0649 2-isopropylmalate synthase K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tmo00630] D TMO_0095 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_a0524 acetyl-CoA synthetase/AMP-(fatty) acid ligase FadDx K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0622 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0846 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_1574 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_3009 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D TMO_0010 citA; Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D TMO_3028 gltA; citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1] D TMO_3061 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_0153 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D TMO_2893 MaoC-like dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D TMO_0119 crotonyl-CoA reductase K14446 ccr; crotonyl-CoA carboxylase/reductase [EC:1.3.1.85] D TMO_1961 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D TMO_0118 meaA; methylmalonyl-CoA mutase K14447 ecm; ethylmalonyl-CoA mutase [EC:5.4.99.63] D TMO_0120 Acyl-CoA dehydrogenase K14448 mcd; (2S)-methylsuccinyl-CoA dehydrogenase [EC:1.3.8.12] D TMO_3272 Acyl dehydratase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148] D TMO_0350 citE; malyl-CoA lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D TMO_2598 propionyl-CoA carboxylase alpha chain K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D TMO_2600 propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D TMO_c0831 mutB; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D TMO_c0832 mutA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D TMO_c0480 glcD; FAD linked oxidase-like protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D TMO_c0479 glcE; glycolate oxidase, subunit glcE K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D TMO_c0478 glcF; Glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D TMO_0255 katA; catalase K03781 katE; catalase [EC:1.11.1.6] D TMO_a0600 katE; catalase K03781 katE; catalase [EC:1.11.1.6] D TMO_3551 gyaR; lactate dehydrogenase and related dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D TMO_0274 ghrA; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D TMO_1177 ghrA; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D TMO_b0269 ghrA; putative 2-hydroxyacid dehydrogenase family protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D TMO_2602 hydrolase, haloacid dehalogenase-like family protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D TMO_c0709 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D TMO_1700 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D TMO_1370 Haloacid dehalogenase domain protein hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D TMO_1396 phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D TMO_0291 puuA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_1993 glnA; L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_c0280 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_3320 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_1825 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_2788 glycine dehydrogenase subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D TMO_2787 glycine dehydrogenase subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D TMO_2790 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_2789 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D TMO_c0319 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D TMO_1023 putative NAD-dependent formate dehydrogenase K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D TMO_1021 yjgC; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D TMO_1020 putative NAD-dependent formate dehydrogenase beta subunit protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D TMO_1019 nuoE; NADH dehydrogenase (ubiquinone) 24 kDa subunit K00127 fdoI; formate dehydrogenase subunit gamma D TMO_b0447 putative esterase/lipase K01432 AFMID; arylformamidase [EC:3.5.1.9] D TMO_0679 Arylformamidase K01432 AFMID; arylformamidase [EC:3.5.1.9] D TMO_c0563 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D TMO_b0477 fmdA; formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D TMO_2345 formiminoglutamase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:tmo00640] D TMO_0095 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_a0524 acetyl-CoA synthetase/AMP-(fatty) acid ligase FadDx K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0622 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0846 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_1574 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_b0292 hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D TMO_3263 CoA-binding protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D TMO_2568 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TMO_2569 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TMO_b0190 2-oxoisovalerate dehydrogenase (alpha subunit) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D TMO_b0191 2-oxoisovalerate dehydrogenase (beta subunit) K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D TMO_b0192 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_2577 mmgC; acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D TMO_1492 yhdH; zinc-binding alcohol dehydrogenase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_0351 accA; Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D TMO_c0732 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D TMO_1152 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D TMO_c0823 biotin/lipoyl attachment domain-containing protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D TMO_c0733 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D TMO_1151 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D TMO_3236 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D TMO_1987 malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D TMO_a0345 beta-alanine-pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D TMO_0945 omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D TMO_2598 propionyl-CoA carboxylase alpha chain K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D TMO_2600 propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D TMO_1961 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D TMO_c0831 mutB; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D TMO_c0832 mutA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D TMO_3008 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D TMO_3007 sucD; Succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D TMO_c0380 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_1373 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_a0560 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_2414 prpC; 2-methylcitrate synthase/citrate synthase II K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5] D TMO_2413 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79] D TMO_2415 prpB; methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30] C 00650 Butanoate metabolism [PATH:tmo00650] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_0125 hbdA; 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D TMO_0628 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D TMO_2085 paaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D TMO_c0211 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_c0783 fadN; 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_0632 peroxisomal bifunctional enzyme K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_a0507 putative acyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_2577 mmgC; acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D TMO_b0122 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D TMO_2893 MaoC-like dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D TMO_0155 phbC; polyhydroxyalkanoate synthase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D TMO_1945 phbC; poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D TMO_3478 phbC; Poly-beta-hydroxybutyrate polymerase domain protein K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D TMO_3147 intracellular PHB depolymerase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D TMO_0153 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D TMO_b0386 arylmalonate decarboxylase K01799 nicE; maleate isomerase [EC:5.2.1.1] D TMO_a0282 arylmalonate decarboxylase K01799 nicE; maleate isomerase [EC:5.2.1.1] D TMO_a0378 maleate cis-trans isomerase protein K01799 nicE; maleate isomerase [EC:5.2.1.1] D TMO_3275 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D TMO_3276 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D TMO_3273 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D TMO_3274 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D TMO_0276 aminotransferase K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D TMO_a0340 gabD; Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_b0421 gabD; Aldehyde dehydrogenase (NAD(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_2303 gabD; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_a0434 putative acetyl-CoA hydrolase/transferase family protein, putative succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18] D TMO_3202 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D TMO_a0285 yngG; Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D TMO_3160 lpsI; 3-oxoadipate CoA-transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D TMO_3159 lpsJ; 3-oxoadipate CoA-transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D TMO_1253 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D TMO_0856 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D TMO_c0213 pamO; steroid monooxygenase K18371 acmA; acetone monooxygenase (methyl acetate-forming) [EC:1.14.13.226] D TMO_1211 4-chloro-3-hydroxybutyrate hydrolase K18372 acmB; methyl acetate hydrolase [EC:3.1.1.114] D TMO_a0485 beta-lactamase K18372 acmB; methyl acetate hydrolase [EC:3.1.1.114] D TMO_0603 ilvI; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_d0067 ilvI; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_0559 ilvB; putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_b0061 ilvB; thiamine pyrophosphate protein central region K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_b0301 alsS; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_d0068 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D TMO_c0854 budC; short-chain dehydrogenase/reductase SDR K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304] C 00660 C5-Branched dibasic acid metabolism [PATH:tmo00660] D TMO_0603 ilvI; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_d0067 ilvI; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_0559 ilvB; putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_b0061 ilvB; thiamine pyrophosphate protein central region K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_b0301 alsS; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_d0068 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D TMO_3008 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D TMO_3007 sucD; Succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D TMO_b0388 MaoC-like dehydratase K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56] D TMO_b0387 HpcH/HpaI aldolase K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25] D TMO_d0041 citE; Citrate lyase K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25] D TMO_0350 citE; malyl-CoA lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D TMO_3272 Acyl dehydratase K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148] D TMO_c0358 isopropylmalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_1648 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_3252 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_b0547 leuC; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_2851 leuC; 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_3060 acnA; aconitate hydratase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_c0359 leuD; isopropylmalate isomerase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_1647 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_3253 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_b0546 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_2852 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_3254 leuB; Isocitrate/isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:tmo00562] D TMO_2830 suhB; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D TMO_a0056 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D TMO_0878 suhB; fructose-1 6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D TMO_c0380 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_1373 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_a0560 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_1750 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tmo00190] D TMO_1978 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D TMO_1977 nuoB; NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D TMO_1976 nuoC; NADH (or F420H2) dehydrogenase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D TMO_1975 nuoD; NADH dehydrogenase I chain D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D TMO_1974 NADH dehydrogenase I chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D TMO_1973 NADH dehydrogenase I subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D TMO_1972 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D TMO_1971 nuoH; NADH dehydrogenase subunit G K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D TMO_1970 nuoI; NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D TMO_1969 nuoJ; NADH-quinone oxidoreductase chain 10 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D TMO_1968 nuoK; NADH dehydrogenase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D TMO_1967 NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D TMO_1966 nuoM; NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D TMO_1965 nuoN; NADH dehydrogenase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D TMO_c0457 NADH dehydrogenase protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D TMO_3275 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D TMO_3276 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D TMO_3273 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D TMO_3274 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D TMO_c0154 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D TMO_c0152 Cytochrome c1, heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D TMO_c0153 petB; Cytochrome b/b6-like protein K00410 fbcH; ubiquinol-cytochrome c reductase cytochrome b/c1 subunit D TMO_2812 ctaB; putative protoheme IX farnesyltransferase (heme o synthase) K02257 COX10; heme o synthase [EC:2.5.1.141] D TMO_c0622 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D TMO_1481 caa(3)-type oxidase, subunit IV K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D TMO_2809 putative cytochrome c oxidase polypeptide III (cytochrome aa3 subunit 3) K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D TMO_1480 ctaE; cytochrome c oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D TMO_2813 ctaD; cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D TMO_1479 ctaD; cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D TMO_a0332 ctaD; cytochrome c oxidase, subunit I K15408 coxAC; cytochrome c oxidase subunit I+III [EC:7.1.1.9] D TMO_2814 ctaC; cytochrome C oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D TMO_a0333 ctaC; cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D TMO_1478 ctaC; cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D TMO_2810 ctaG; cytochrome-c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D TMO_2806 ctaA; cytochrome C oxidase assembly protein, AA3 subunit-controlling protein K02259 COX15; heme a synthase [EC:1.17.99.9] D TMO_2279 fixN; cbb3-type cytochrome c oxidase subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D TMO_c0924 fixN; cbb3-type cytochrome c oxidase subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D TMO_2280 FixO1 cytochrome C oxidase subunit K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D TMO_c0923 cytochrome-c oxidase FixO2 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D TMO_2281 hypothetical protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D TMO_2282 petJ; cytochrome-c oxidase fixP chain K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D TMO_c0922 petJ; cytochrome-c oxidase fixP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D TMO_c0623 cyoC; cytochrome o ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D TMO_c0624 cyoB; cytochrome o ubiquinol oxidase, subunit I (ubiquinol oxidase chain A) K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D TMO_c0625 cyoA; ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D TMO_a0189 cydA; cytochrome D ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D TMO_b0108 cydA; cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D TMO_a0188 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D TMO_b0107 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D TMO_c0270 diheme cytochrome c SoxE K08738 CYC; cytochrome c D TMO_c0847 cytochrome c family protein K08738 CYC; cytochrome c D TMO_3190 cycM; putative CytoChrome c-like protein K08738 CYC; cytochrome c D TMO_0867 putative cache sensor protein K08738 CYC; cytochrome c D TMO_1656 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D TMO_2987 atpA; primosome assembly protein PriA K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D TMO_1649 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D TMO_2985 atpD; F1-ATP Synthase Beta Chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D TMO_1657 atpG; H+transporting two-sector ATPase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D TMO_2986 atpG; F-type H+-transporting ATPase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D TMO_2988 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D TMO_1650 alternate F1F0 ATPase, F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D TMO_2984 atpC; F-type H+-transporting ATPase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D TMO_1653 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D TMO_2779 atpB; F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D TMO_1655 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D TMO_2781 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D TMO_2782 atpF; ATP synthase B chain precursor K02109 ATPF0B; F-type H+-transporting ATPase subunit b D TMO_1654 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D TMO_2780 atpE; ATP synthase C chain K02128 ATPeF0C; F-type H+-transporting ATPase subunit c D TMO_3450 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D TMO_3317 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:tmo00680] D TMO_3459 alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D TMO_3460 intracellular septation protein A K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D TMO_1021 yjgC; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D TMO_1020 putative NAD-dependent formate dehydrogenase beta subunit protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D TMO_1019 nuoE; NADH dehydrogenase (ubiquinone) 24 kDa subunit K00127 fdoI; formate dehydrogenase subunit gamma D TMO_1023 putative NAD-dependent formate dehydrogenase K00126 fdsD; formate dehydrogenase subunit delta [EC:1.17.1.9] D TMO_c0280 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_3320 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_1825 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_c0319 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D TMO_1746 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TMO_0414 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D TMO_3009 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D TMO_0350 citE; malyl-CoA lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D TMO_0881 fbaB; fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D TMO_1942 ywjI; fructose 1,6-bisphosphatase II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D TMO_2568 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TMO_2569 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TMO_0095 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_a0524 acetyl-CoA synthetase/AMP-(fatty) acid ligase FadDx K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0622 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0846 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_1574 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_2020 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TMO_2974 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D TMO_0919 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D TMO_0918 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D TMO_d0065 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:tmo00910] D TMO_b0477 fmdA; formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] D TMO_b0450 narK; nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D TMO_0321 nrtC; putative nitrate transporter component, nrtA K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D TMO_0322 nrtB; putative nitrate transport system permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D TMO_2146 nrtB; nitrate ABC transporter, inner membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D TMO_0323 cmpD; nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D TMO_2147 nasD; nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D TMO_b0451 narG; nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D TMO_b0452 narY; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D TMO_b0454 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D TMO_2150 nasA; Anaerobic dehydrogenase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D TMO_2148 nasD; assimilatory nitrite reductase large subunit K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D TMO_2149 nasE; Nitrite reductase (NAD(P)H) large subunit, NirD K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4] D TMO_c0396 putative nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D TMO_3310 putative nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D TMO_b0120 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D TMO_b0285 yrpB; 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D TMO_b0445 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D TMO_c0200 nitA; putative amidohydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D TMO_3124 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D TMO_0186 gdhA; Glu/Leu/Phe/Val dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D TMO_0291 puuA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_1993 glnA; L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_0185 gltB; glutamate synthase(NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D TMO_0184 gltD; putative oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D TMO_0324 cynS; cyanate hydratase K01725 cynS; cyanate lyase [EC:4.2.1.104] D TMO_0205 icfA; Putative carbonic anhydrase precursor K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D TMO_3301 icfA; Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:tmo00920] D TMO_1563 cysP; sulfate ABC transporter, sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D TMO_0705 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D TMO_0704 cysT; sulfate transport system permease protein K02046 cysU; sulfate/thiosulfate transport system permease protein D TMO_1562 cysU; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D TMO_0703 cysW; Sulfate ABC transporter permease CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D TMO_1561 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D TMO_0248 cysA; sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D TMO_2731 ssuA; sulfate ester transport system substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D TMO_2730 ssuC; sulfate ester transport system permease protein K15554 ssuC; sulfonate transport system permease protein D TMO_2729 cmpB; sulfate ester transporter permease protein K15554 ssuC; sulfonate transport system permease protein D TMO_2728 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D TMO_0687 sulfate adenylyltransferase, large subunit K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D TMO_0688 cysC; NodQ bifunctional enzyme K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D TMO_0686 sulfate adenylyltransferase subunit 2 sulfate adenylatetransferase sat ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D TMO_2337 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D TMO_2336 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D TMO_c0777 sir1; sulfite reductase (ferredoxin) K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D TMO_1482 Sulfide:quinone oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D TMO_2506 rhodanese-related sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D TMO_c0668 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D TMO_2503 cysB; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D TMO_3555 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D TMO_0609 metA; Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D TMO_0142 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D TMO_c0214 esterase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D TMO_0747 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D TMO_3334 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D TMO_0639 alkK; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligase II K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D TMO_1913 alkK; medium-chain-fatty-acid--CoA ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D TMO_3500 alkK; medium-chain-fatty-acid-CoA ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D TMO_0845 alkK; Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D TMO_c0773 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D TMO_c0782 mmgC; acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D TMO_c0641 3-hydroxybutyryl-CoA dehydratase K20036 dmdD; (methylthio)acryloyl-CoA hydratase [EC:4.2.1.155] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tmo00061] D TMO_0351 accA; Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D TMO_c0732 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D TMO_1152 acetyl-CoA carboxylase biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D TMO_c0823 biotin/lipoyl attachment domain-containing protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D TMO_c0733 acetyl-CoA carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D TMO_1151 accC; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D TMO_3236 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D TMO_0489 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D TMO_1864 acpP; transit peptide-acyl carrier protein fusion protein K02078 acpP; acyl carrier protein D TMO_1866 fabD; S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D TMO_1810 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D TMO_0490 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP synthase II) (KAS II) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D TMO_1863 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D TMO_1543 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D TMO_c0537 putative oxidoreductase protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_1865 nodG; dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_2839 fabG; short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_c0839 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_3257 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_0600 fabG; short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_0978 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_a0236 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_1771 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D TMO_2256 enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D TMO_0984 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D TMO_c0786 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0766 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_3063 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0167 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0366 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_2034 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_1434 lcfA; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0226 Acyl-CoA synthetase/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0689 lcfA; 4-coumarate-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0512 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0234 fadD; AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0484 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation [PATH:tmo00062] D TMO_c0211 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] C 00071 Fatty acid degradation [PATH:tmo00071] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2408 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_c0784 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_c0211 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_c0783 fadN; 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_0632 peroxisomal bifunctional enzyme K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_2577 mmgC; acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D TMO_0522 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_a0452 mmgC; acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_a0520 Acyl-CoA dehydrogenase, C-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_0979 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_0646 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_a0301 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_b0391 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_b0293 acyl-CoA dehydrogenase domain-containing protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_b0361 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_c0807 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_0697 acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D TMO_a0516 Long-chain specific acyl-CoA dehydrogenase K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8] D TMO_0510 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D TMO_b0549 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D TMO_c0786 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0766 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_3063 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0167 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0366 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_2034 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_1434 lcfA; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0226 Acyl-CoA synthetase/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0689 lcfA; 4-coumarate-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0512 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0234 fadD; AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0484 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0555 thcD; FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D TMO_c0277 thcD; FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D TMO_b0125 thcD; ferredoxin--NAD+ reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D TMO_3459 alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D TMO_2931 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_1503 adhA; zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_b0416 alcohol dehydrogenase protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:tmo00561] D TMO_c0319 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_0444 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D TMO_d0038 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D TMO_1811 plsX; putative glycerol-3-phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D TMO_2548 plsY; Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D TMO_0134 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:tmo00564] D TMO_c0635 gpsA; glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D TMO_0443 glpD; glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D TMO_1293 glpD; Glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D TMO_d0036 oxidoreductase, FAD-binding protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D TMO_b0104 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D TMO_2548 plsY; Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D TMO_0134 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D TMO_0816 pldB; alpha/beta hydrolase fold protein K01048 pldB; lysophospholipase [EC:3.1.1.5] D TMO_3302 ugpQ; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D TMO_3324 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D TMO_2915 eutB; ethanolamine ammonia-lyase heavy chain K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D TMO_2916 eutC; Ethanolamine ammonia-lyase K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D TMO_1929 phospholipid N-methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D TMO_c0677 rsmA; phospholipid N-methyltransferase protein K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D TMO_c0435 rsmA; Methyltransferase type 12 K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D TMO_1777 cdsA; CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D TMO_1708 pgpA; phosphatidylglycerophosphatase A and related protein K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D TMO_c0131 pgsA; Phosphatidylglycerophosphate synthase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] D TMO_1838 CDP-alcohol phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:tmo00592] D TMO_2408 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_c0784 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:tmo01040] D TMO_c0803 fatty-acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D TMO_3198 tesA; SGNH hydrolase-type arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D TMO_0232 GDSL-like lipase/acylhydrolase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tmo00230] D TMO_c0164 nudF; MutT/nudix family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D TMO_0309 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TMO_1879 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D TMO_2874 purD; phosphoribosylamine/glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D TMO_1841 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D TMO_2261 phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D TMO_2260 purL; Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain protein K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D TMO_2258 yexA; phosphoribosylformylglycinamidine synthase protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D TMO_2259 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D TMO_1840 purM; Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D TMO_0836 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D TMO_0837 purE; phosphoribosylcarboxyaminoimidazole mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D TMO_2257 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D TMO_2252 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D TMO_3120 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D TMO_0990 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TMO_c0191 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TMO_0640 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TMO_1540 surE; acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TMO_0312 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D TMO_0129 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D TMO_1438 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D TMO_1842 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TMO_3470 Xanthosine triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D TMO_a0304 yagR; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein K11177 yagR; xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4] D TMO_a0305 yagS; molybdopterin dehydrogenase FAD-binding protein K11178 yagS; xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4] D TMO_a0306 yagT; oxidoreductase K13483 yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit D TMO_c0281 yfeJ; glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D TMO_1445 guaA; bifunctional GMP synthase/glutamine amidotransferase protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D TMO_1854 gmk; Guanylate kinase (GMP kinase) K00942 gmk; guanylate kinase [EC:2.7.4.8] D TMO_2411 NrdA protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_2410 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_c0471 nrdZ; putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_c0741 nrdJ; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_2409 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TMO_1507 dGTP triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D TMO_1591 Guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D TMO_3316 Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D TMO_1436 Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D TMO_0200 putative adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_2251 cya2; adenylate cyclase protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_c0721 adenylate cyclase protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_3034 adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_3239 putative adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_b0209 ferredoxin K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_3107 cyaA; adenylate cyclase, family 3 K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_3118 cya2; adenylyl cyclase class-3/4/guanylyl cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_3516 cya1; adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_c0778 adenylate cyclase 1 K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TMO_0921 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D TMO_c0408 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D TMO_0311 adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D TMO_0896 hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D TMO_2611 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D TMO_1693 mazG; MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D TMO_b0376 hypothetical protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D TMO_0790 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D TMO_3485 putative ICC protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D TMO_0687 sulfate adenylyltransferase, large subunit K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D TMO_0688 cysC; NodQ bifunctional enzyme K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D TMO_0686 sulfate adenylyltransferase subunit 2 sulfate adenylatetransferase sat ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D TMO_c0466 alc1; allantoicase K01477 alc; allantoicase [EC:3.5.3.4] D TMO_c0467 allA; ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D TMO_1730 ureC; Urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D TMO_1729 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D TMO_1728 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00240 Pyrimidine metabolism [PATH:tmo00240] D TMO_c0110 carB; Carbamoylphosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D TMO_c0109 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D TMO_2546 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D TMO_2547 pyrC; dihydroorotase-like protein K01465 URA4; dihydroorotase [EC:3.5.2.3] D TMO_0529 allB; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D TMO_3328 pyrD; Dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D TMO_1592 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D TMO_3232 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D TMO_1780 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D TMO_1842 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TMO_1693 mazG; MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D TMO_3403 Nucleotide-binding protein implicated in inhibition of septum formation K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D TMO_1006 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D TMO_1748 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D TMO_3220 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D TMO_c0191 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TMO_0640 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TMO_1540 surE; acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TMO_2796 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D TMO_0896 hypothetical protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D TMO_0672 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D TMO_0999 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D TMO_2411 NrdA protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_2410 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_c0471 nrdZ; putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_c0741 nrdJ; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_2409 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TMO_1677 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D TMO_3557 deoxyuridine 5'triphosphate nucleotidohydrolase protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TMO_2448 thyX; thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D TMO_c0378 yeiT; putative oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D TMO_c0377 yeiA; dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D TMO_c0375 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D TMO_b0181 allC; allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D TMO_c0379 hyuC; amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D TMO_b0550 isochorismatase hydrolase K09020 rutB; ureidoacrylate peracid hydrolase [EC:3.5.1.110] D TMO_b0198 putative hydrolase K09020 rutB; ureidoacrylate peracid hydrolase [EC:3.5.1.110] D TMO_1695 ydfG; short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tmo00250] D TMO_b0312 aatB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_b0349 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_c0124 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_1902 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D TMO_0890 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D TMO_b0255 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D TMO_0889 ansA; cytoplasmic asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D TMO_c0187 asnO; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_2500 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_c0775 asnO; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_c0861 asnO; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_b0137 putative asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_0996 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_2418 asnO; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_3389 asnO; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_a0047 asnB; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_a0581 asnH; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_0946 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D TMO_0888 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D TMO_3105 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D TMO_0127 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D TMO_0921 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D TMO_2252 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D TMO_2546 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D TMO_0276 aminotransferase K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] D TMO_a0340 gabD; Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_b0421 gabD; Aldehyde dehydrogenase (NAD(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_2303 gabD; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_0185 gltB; glutamate synthase(NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D TMO_0184 gltD; putative oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D TMO_3124 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D TMO_0186 gdhA; Glu/Leu/Phe/Val dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D TMO_0608 putA; delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D TMO_0291 puuA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_1993 glnA; L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_c0110 carB; Carbamoylphosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D TMO_c0109 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D TMO_2259 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D TMO_2313 glmS; glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TMO_1879 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:tmo00260] D TMO_0375 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D TMO_3255 Aspartate-semialdehyde dehydrogenase, USG-1 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D TMO_3012 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D TMO_1943 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D TMO_2794 thrB; Homoserine kinase ThrB K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D TMO_c0670 thrC; threonine synthase-like protein K01733 thrC; threonine synthase [EC:4.2.3.1] D TMO_2804 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D TMO_0939 ltaE; putative low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D TMO_c0280 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_3320 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_1825 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_0274 ghrA; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D TMO_1177 ghrA; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D TMO_b0269 ghrA; putative 2-hydroxyacid dehydrogenase family protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D TMO_c0319 ttuD; hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D TMO_2020 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TMO_2974 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D TMO_0919 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D TMO_0918 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D TMO_d0065 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D TMO_1695 ydfG; short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D TMO_2051 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D TMO_3343 maoI; tyramine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D TMO_2788 glycine dehydrogenase subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D TMO_2787 glycine dehydrogenase subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D TMO_2790 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_2789 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D TMO_b0542 soxA; sarcosine oxidase alpha subunit family protein K00302 soxA; sarcosine oxidase, subunit alpha [EC:1.5.3.24 1.5.3.1] D TMO_b0540 soxB; sarcosine oxidase beta subunit family protein K00303 soxB; sarcosine oxidase, subunit beta [EC:1.5.3.24 1.5.3.1] D TMO_b0543 soxG; sarcosine oxidase, gamma subunit K00305 soxG; sarcosine oxidase, subunit gamma [EC:1.5.3.24 1.5.3.1] D TMO_b0541 soxD; sarcosine oxidase delta subunit family protein K00304 soxD; sarcosine oxidase, subunit delta [EC:1.5.3.24 1.5.3.1] D TMO_c0648 cysB; cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D TMO_c0393 Cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D TMO_c0504 sdaA; L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D TMO_c0333 Threo-3-hydroxyaspartate ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D TMO_1612 tdcB; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D TMO_2329 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D TMO_3235 trpA; Tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D TMO_3234 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D TMO_c0103 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:tmo00270] D TMO_c0668 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D TMO_2503 cysB; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D TMO_3555 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D TMO_c0393 Cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D TMO_2272 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D TMO_2515 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D TMO_2882 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D TMO_c0648 cysB; cystathionine beta-synthase K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D TMO_0826 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D TMO_2416 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D TMO_3537 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D TMO_1620 speH; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D TMO_1619 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D TMO_c0151 mtnP; Purine phosphorylase, family 2 K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] D TMO_0312 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D TMO_c0150 mtnA; Initiation factor 2B related protein K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D TMO_a0147 mtnB; methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] D TMO_a0145 mtnC; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D TMO_a0146 mtnD; acireductone dioxygenase ARD K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] D TMO_2955 mdeA; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D TMO_c0885 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D TMO_0170 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D TMO_c0455 acdS; 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D TMO_0375 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D TMO_3255 Aspartate-semialdehyde dehydrogenase, USG-1 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D TMO_3012 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D TMO_1943 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D TMO_0609 metA; Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D TMO_0142 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D TMO_c0214 esterase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D TMO_0747 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D TMO_1016 cysD; O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D TMO_1793 cysD; O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D TMO_3334 metZ; O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-] D TMO_c0639 ilvE; aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_c0139 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3171 ilvE; branched-chain amino acid aminotransferase-like protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3195 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_2821 putative glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D TMO_c0728 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D TMO_3463 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D TMO_b0312 aatB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_b0349 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_c0124 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_2506 rhodanese-related sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D TMO_3009 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D TMO_c0504 sdaA; L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D TMO_0919 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D TMO_0918 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:tmo00280] D TMO_c0639 ilvE; aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_c0139 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3171 ilvE; branched-chain amino acid aminotransferase-like protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3195 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_2570 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D TMO_b0190 2-oxoisovalerate dehydrogenase (alpha subunit) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D TMO_b0191 2-oxoisovalerate dehydrogenase (beta subunit) K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D TMO_b0192 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_2577 mmgC; acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D TMO_0522 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_a0452 mmgC; acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_a0520 Acyl-CoA dehydrogenase, C-terminal domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_0979 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_0646 putative acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_a0301 hypothetical protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_b0391 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_b0293 acyl-CoA dehydrogenase domain-containing protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_b0361 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_c0807 acyl-CoA dehydrogenase domain protein K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D TMO_2579 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D TMO_a0162 Isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_c0211 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_2408 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_c0784 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_2598 propionyl-CoA carboxylase alpha chain K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3] D TMO_2600 propionyl-CoA carboxylase beta chain K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15] D TMO_1961 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D TMO_c0831 mutB; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D TMO_c0832 mutA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D TMO_1371 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D TMO_c0493 6-phosphogluconate dehydrogenase NAD-binding protein K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D TMO_2958 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D TMO_c0380 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_1373 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_a0560 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_0940 malonyl-CoA synthase K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-] D TMO_a0345 beta-alanine-pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D TMO_0945 omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D TMO_2573 3-methylcrotonoyl-CoA carboxylase subunit alpha K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D TMO_2575 carboxyltransferase subunit of acetyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D TMO_a0156 3-methylcrotonoyl-CoA carboxylase beta subunit K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D TMO_2574 paaF; enoyl-CoA hydratase/isomerase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18] D TMO_3202 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D TMO_a0285 yngG; Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D TMO_3160 lpsI; 3-oxoadipate CoA-transferase subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] D TMO_3159 lpsJ; 3-oxoadipate CoA-transferase, beta subunit K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5] D TMO_1253 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:tmo00290] D TMO_c0333 Threo-3-hydroxyaspartate ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D TMO_1612 tdcB; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D TMO_2329 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D TMO_c0358 isopropylmalate isomerase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_1648 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_3252 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_b0547 leuC; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_2851 leuC; 3-isopropylmalate dehydratase K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D TMO_3060 acnA; aconitate hydratase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_c0359 leuD; isopropylmalate isomerase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_1647 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_3253 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_b0546 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_2852 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D TMO_3254 leuB; Isocitrate/isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D TMO_0603 ilvI; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_d0067 ilvI; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_0559 ilvB; putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_b0061 ilvB; thiamine pyrophosphate protein central region K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_b0301 alsS; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_d0068 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D TMO_d0069 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D TMO_b0150 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D TMO_1504 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D TMO_c0639 ilvE; aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_c0139 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3171 ilvE; branched-chain amino acid aminotransferase-like protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3195 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_2570 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D TMO_0013 pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D TMO_2294 alpha-isopropylmalate/homocitrate synthase family transferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D TMO_0760 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D TMO_1017 leuA; pyruvate carboxyltransferase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D TMO_b0581 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:tmo00300] D TMO_1943 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D TMO_0375 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D TMO_3255 Aspartate-semialdehyde dehydrogenase, USG-1 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D TMO_3012 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D TMO_b0467 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D TMO_1584 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D TMO_3026 dapB; Dihydrodipicolinate reductase, bacterial K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D TMO_3476 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D TMO_2706 dapD; Tetrahydrodipicolinate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D TMO_0027 argD; acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D TMO_3321 argD; acetylornithine and succinylornithine K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D TMO_1991 ybdL; putative cysteine-S-conjugate beta-lyase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D TMO_2705 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D TMO_0168 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D TMO_0128 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D TMO_c0246 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TMO_c0245 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:tmo00310] D TMO_b0313 NAD-dependent aldehyde dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D TMO_3005 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_0510 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D TMO_b0549 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_c0211 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0412 gamma-aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19] D TMO_2537 Aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19] D TMO_a0340 gabD; Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_b0421 gabD; Aldehyde dehydrogenase (NAD(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_2303 gabD; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_b0548 L-carnitine dehydratase/bile acid-inducible protein F K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D TMO_2162 hypothetical protein K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247] D TMO_2818 hypothetical protein K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247] D TMO_a0022 dadA; D-amino-acid dehydrogenase (DadA-like) K26064 amaD; D-lysine oxidase D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:tmo00220] D TMO_0028 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D TMO_3105 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D TMO_0127 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D TMO_a0012 arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D TMO_1150 allophanate hydrolase subunit 1 K01941 E6.3.4.6; urea carboxylase [EC:6.3.4.6] D TMO_1197 Urea amidolyase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D TMO_1730 ureC; Urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D TMO_1729 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D TMO_1728 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D TMO_2259 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D TMO_0291 puuA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_1993 glnA; L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_3124 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D TMO_0186 gdhA; Glu/Leu/Phe/Val dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D TMO_b0312 aatB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_b0349 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_c0124 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_0355 argJ; amino-acid N-acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D TMO_2710 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D TMO_0943 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D TMO_0027 argD; acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D TMO_3321 argD; acetylornithine and succinylornithine K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D TMO_1559 yodQ; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] D TMO_3330 argE; acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:tmo00330] D TMO_c0320 Creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D TMO_2031 creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D TMO_0672 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D TMO_c0352 hydantoin utilization protein K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D TMO_b0551 hyuA; hydantoin utilization protein A K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D TMO_c0353 putative N-methylhydantoinase B K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D TMO_b0552 5-oxoprolinase (ATP-hydrolyzing) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D TMO_2567 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12] D TMO_1349 agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12] D TMO_2565 hydrolase, carbon-nitrogen family K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D TMO_1614 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D TMO_1581 Orn/DAP/Arg decarboxylase 2 K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D TMO_1619 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D TMO_1620 speH; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_b0412 gamma-aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19] D TMO_2537 Aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19] D TMO_b0404 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_c0445 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_a0347 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0385 putative amidotransferase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_1787 nylA; 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_0570 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0047 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0176 amiD; Putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0262 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_0397 ordL; FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D TMO_b0414 puuC; aldehyde dehydrogenase protein K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D TMO_1026 puuC; aldehyde dehydrogenase (acceptor) K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99] D TMO_a0012 arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D TMO_0301 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D TMO_0608 putA; delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D TMO_a0011 ornithine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12] D TMO_2968 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TMO_2969 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D TMO_3049 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D TMO_b0312 aatB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_b0349 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_c0124 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:tmo00340] D TMO_1001 hisG; ATP phosphoribosyltransferase catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D TMO_0920 hisZ; ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D TMO_3364 hisE; phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D TMO_3363 hisI; phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D TMO_3361 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D TMO_3360 hisH; imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D TMO_3362 hisF; imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D TMO_3358 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D TMO_0140 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_b0179 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_3189 Inositol monophosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D TMO_0437 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D TMO_1002 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D TMO_2950 hutH; phenylalanine/histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D TMO_2346 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D TMO_2949 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D TMO_2348 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D TMO_2347 N-formimino-L-glutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D TMO_2345 formiminoglutamase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_a0035 Meiotically up-regulated gene 158 protein K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44] C 00350 Tyrosine metabolism [PATH:tmo00350] D TMO_b0312 aatB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_b0349 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_c0124 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_0140 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_b0179 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_c0718 vllY; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D TMO_c0717 homogentisate 12-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D TMO_a0557 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D TMO_c0663 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D TMO_2306 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D TMO_c0716 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D TMO_3343 maoI; tyramine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D TMO_3459 alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D TMO_2931 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_1503 adhA; zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_b0416 alcohol dehydrogenase protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_b0432 hpcG; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D TMO_2554 garL; putative HpcH/HpaI aldolase family protein K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D TMO_b0433 hpcH; HpcH/HpaI aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D TMO_a0340 gabD; Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_b0421 gabD; Aldehyde dehydrogenase (NAD(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_2303 gabD; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_c0658 gentisate 1,2-dioxygenase K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4] D TMO_a0551 gentisate 1,2-dioxygenase K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4] D TMO_b0438 gentisate 1,2-dioxygenase K00450 E1.13.11.4; gentisate 1,2-dioxygenase [EC:1.13.11.4] D TMO_a0558 fumarylacetoacetate hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] D TMO_c0659 fumarylacetoacetat hydroxylase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] D TMO_2333 fumarylacetoacetat hydroxylase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] D TMO_0662 ybiC; malate dehydrogenase K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-] C 00360 Phenylalanine metabolism [PATH:tmo00360] D TMO_0657 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D TMO_3343 maoI; tyramine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D TMO_b0174 paaK; putative aerobic phenylacetate-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D TMO_0573 paaA; phenylacetic acid degradation protein (similar to paaA) K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D TMO_c0224 paaA; phenylacetic acid degradation protein (similar to paaA) K02609 paaA; ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] D TMO_0483 paaG; enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D TMO_c0869 paaG; enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D TMO_3262 enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D TMO_a0503 crotonase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D TMO_0699 enoyl-CoA hydratase/isomerase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_0125 hbdA; 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D TMO_0628 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D TMO_2085 paaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D TMO_b0312 aatB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_b0349 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_c0124 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_0140 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_b0179 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_c0718 vllY; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D TMO_0215 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D TMO_b0469 dadA; D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D TMO_0950 dadA; glycine/D-amino acid oxidase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D TMO_b0060 dadA; FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D TMO_0662 ybiC; malate dehydrogenase K13574 hcxB; hydroxycarboxylate dehydrogenase B [EC:1.1.1.237 1.1.1.-] D TMO_0566 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] D TMO_b0404 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_c0445 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_a0347 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0385 putative amidotransferase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_1787 nylA; 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_0570 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0047 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0176 amiD; Putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0262 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0116 bedB; CinA3 K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component D TMO_a0555 thcD; FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D TMO_c0277 thcD; FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D TMO_b0125 thcD; ferredoxin--NAD+ reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3] D TMO_b0121 todJ; 2-oxopent-4-enoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_1615 mhpD; fumarylacetoacetate (FAA) hydrolase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_b0505 mhpD; fumarylacetoacetate (FAA) hydrolase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_3169 mhpE; pyruvate carboxyltransferase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D TMO_b0123 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D TMO_b0122 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00380 Tryptophan metabolism [PATH:tmo00380] D TMO_b0447 putative esterase/lipase K01432 AFMID; arylformamidase [EC:3.5.1.9] D TMO_0679 Arylformamidase K01432 AFMID; arylformamidase [EC:3.5.1.9] D TMO_b0431 dmpC; 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D TMO_3005 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_0510 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D TMO_b0549 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_c0211 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0531 tnaA; tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_b0445 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D TMO_c0200 nitA; putative amidohydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D TMO_0455 nthA; nitrile hydratase alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D TMO_b0395 nthA; alpha subunit of nitrile hydratase K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D TMO_0454 nthB; nitrile hydratase beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D TMO_b0396 nitrile hydratase beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D TMO_b0404 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_c0445 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_a0347 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0385 putative amidotransferase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_1787 nylA; 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_0570 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0047 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0176 amiD; Putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0262 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_0255 katA; catalase K03781 katE; catalase [EC:1.11.1.6] D TMO_a0600 katE; catalase K03781 katE; catalase [EC:1.11.1.6] D TMO_0566 katG; catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tmo00400] D TMO_2301 phospho-2-dehydro-3-deoxyheptonate aldolase 1 K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D TMO_c0731 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D TMO_3402 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D TMO_0345 aroK; 3-dehydroquinate synthase K00891 aroK; shikimate kinase [EC:2.7.1.71] D TMO_3219 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D TMO_0983 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D TMO_1752 trpE; Anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D TMO_1758 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D TMO_1258 anthranilate synthase K13503 trpEG; anthranilate synthase [EC:4.1.3.27] D TMO_1759 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D TMO_3233 trpF; N-(5'phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D TMO_1760 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D TMO_3235 trpA; Tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D TMO_3234 trpB; tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D TMO_c0103 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D TMO_0141 pheA; chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D TMO_0139 tyrC; cyclohexadienyl dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D TMO_3192 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D TMO_b0312 aatB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_b0349 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_c0124 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_0140 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_b0179 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_0657 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:tmo00410] D TMO_3343 maoI; tyramine oxidase K00276 AOC3; primary-amine oxidase [EC:1.4.3.21] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_b0412 gamma-aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19] D TMO_2537 Aminobutyraldehyde dehydrogenase K00137 prr; aminobutyraldehyde dehydrogenase [EC:1.2.1.19] D TMO_0478 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D TMO_c0378 yeiT; putative oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D TMO_c0377 yeiA; dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D TMO_c0375 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D TMO_b0181 allC; allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D TMO_c0379 hyuC; amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D TMO_a0345 beta-alanine-pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D TMO_0945 omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_2577 mmgC; acyl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D TMO_1987 malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D TMO_c0380 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_1373 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D TMO_a0560 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:tmo00430] D TMO_3011 ywrD; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_b0384 acyI; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_c0339 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_c0706 gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_c0442 aminotransferase K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77] D TMO_0946 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D TMO_3124 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D TMO_2569 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TMO_2568 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:tmo00440] D TMO_b0348 phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] D TMO_2100 phnI; phosphonate metabolism K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D TMO_2102 phnG; PhnG protein K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D TMO_2101 phnH; phosphonate C-P lyase system protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D TMO_2097 phnL; Phosphonates transport ATP-binding protein phnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D TMO_2003 phnM; putative metal-dependent hydrolase involved in phosphonate metabolism PhnM protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D TMO_2096 phnM; phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D TMO_2099 phnJ; enzyme of phosphonate metabolism K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D TMO_1681 lipB; metallo-beta-lactamase superfamily K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:tmo00450] D TMO_0747 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D TMO_2272 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D TMO_2515 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D TMO_2882 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D TMO_0826 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D TMO_2416 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D TMO_c0393 Cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D TMO_2955 mdeA; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D TMO_0108 sufS; cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D TMO_0518 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D TMO_2185 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D TMO_c0116 trxB; thioredoxin reductase (NADPH) K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D TMO_0687 sulfate adenylyltransferase, large subunit K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D TMO_0688 cysC; NodQ bifunctional enzyme K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D TMO_0686 sulfate adenylyltransferase subunit 2 sulfate adenylatetransferase sat ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D TMO_1679 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tmo00460] D TMO_a0377 gluA; cellobiase CelA precursor K05349 bglX; beta-glucosidase [EC:3.2.1.21] D TMO_b0445 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D TMO_c0200 nitA; putative amidohydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D TMO_3011 ywrD; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_b0384 acyI; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_c0339 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_c0706 gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_0889 ansA; cytoplasmic asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D TMO_c0280 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_3320 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_1825 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_b0477 fmdA; formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49] C 00470 D-Amino acid metabolism [PATH:tmo00470] D TMO_0216 dadB; putative alanine racemase, catabolic K01775 alr; alanine racemase [EC:5.1.1.1] D TMO_1874 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TMO_c0238 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TMO_2259 purQ; phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D TMO_c0243 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TMO_0890 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D TMO_b0255 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D TMO_0168 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D TMO_0128 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D TMO_1029 FAD dependent oxidoreductase K19746 dauA; D-arginine dehydrogenase [EC:1.4.99.6] D TMO_b0094 proline racemase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D TMO_b0087 dapA; Dihydrodipicolinate synthase K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D TMO_a0251 aldH; dehydrogenase K13877 aldH; 2,5-dioxopentanoate dehydrogenase [EC:1.2.1.26] D TMO_0215 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D TMO_b0469 dadA; D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D TMO_0950 dadA; glycine/D-amino acid oxidase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D TMO_b0060 dadA; FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:tmo00480] D TMO_3011 ywrD; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_b0384 acyI; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_c0339 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_c0706 gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_0137 chaC; Cation transport protein chaC K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D TMO_1252 chaC; ChaC-like protein K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D TMO_c0259 5-oxoprolinase (ATP-hydrolyzing) K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] D TMO_1153 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D TMO_2821 putative glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D TMO_c0728 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D TMO_3463 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D TMO_1846 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D TMO_3182 pepB; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D TMO_1210 pepN; membrane alanyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D TMO_0188 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_c0274 gstB; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_c0525 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_2489 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_c0816 gst3; glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_c0729 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_a0392 glutathione S-transferase protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_3108 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_0150 yibF; Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_a0451 gst3; Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_2302 glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D TMO_1136 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D TMO_c0507 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D TMO_0404 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D TMO_2797 Redoxin domain protein K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D TMO_1614 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D TMO_1581 Orn/DAP/Arg decarboxylase 2 K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D TMO_1619 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:tmo00540] D TMO_1770 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D TMO_c0234 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D TMO_1772 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D TMO_1769 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D TMO_1768 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D TMO_2834 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D TMO_0181 putative sugar phosphate isomerase involved in capsule formation K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D TMO_1747 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D TMO_3191 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D TMO_2833 waaA; three-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D TMO_2835 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D TMO_2910 hypothetical protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-] D TMO_0681 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D TMO_0680 hldE; rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D TMO_0482 gmhB; Histidinol phosphatase-related phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D TMO_0683 hldD; nucleoside-diphosphate-sugar epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D TMO_0993 glycosyl transferase family protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:tmo00541] D TMO_0577 exoN; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D TMO_0707 hldD; NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D TMO_0578 rkpK; putative UDP glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D TMO_0709 capI; NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D TMO_3041 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D TMO_0713 rfbF; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D TMO_a0325 rfbE; NAD-dependent epimerase/dehydratase K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10] D TMO_0715 algA; GDP-mannose pyrophosphorylase EpsQ K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D TMO_0579 exoC; phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D TMO_2541 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D TMO_0710 capL; UDP-N-acetyl-D-mannosaminuronate dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] C 00550 Peptidoglycan biosynthesis [PATH:tmo00550] D TMO_1000 murA; UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TMO_c0239 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TMO_c0240 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TMO_c0243 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TMO_c0246 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TMO_c0238 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TMO_c0245 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TMO_1778 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TMO_2029 uppP; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D TMO_b0490 yodM; phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D TMO_c0244 mraY; Glycosyl transferase, family 4 K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TMO_c0241 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TMO_0237 Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D TMO_a0456 glycosyl transferase family protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D TMO_c0702 mrcA; penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TMO_0008 pbpG; penicillin binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TMO_0764 mrdA; penicillin binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TMO_c0247 penA; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TMO_1676 dacA; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:tmo00552] D TMO_2029 uppP; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D TMO_b0490 yodM; phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D TMO_1735 glycosyl transferase WecB/TagA/CpsF K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:tmo00543] D TMO_a0426 algI; membrane bound O-acyl transferase, MBOAT K19294 algI; alginate O-acetyltransferase complex protein AlgI D TMO_a0587 algI; membrane bound O-acyl transferase MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI D TMO_0722 glycosyltransferase K21001 pslH; polysaccharide biosynthesis protein PslH D TMO_c0668 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D TMO_3288 WbuT K13665 gumL; pyruvyltransferase D TMO_1986 exoZ; exopolysaccharide production (acetyltransferase) protein K16568 exoZ; exopolysaccharide production protein ExoZ D TMO_2590 exoZ; acyltransferase 3 K16568 exoZ; exopolysaccharide production protein ExoZ B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tmo00730] D TMO_0914 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D TMO_0915 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D TMO_c0665 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TMO_c0666 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TMO_0966 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TMO_c0730 thiG; bifunctional sulfur carrier protein/thiazole synthase protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D TMO_3178 thiM; Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D TMO_3177 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D TMO_0880 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D TMO_1818 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D TMO_2611 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D TMO_c0587 Transcriptional activator, TenA family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D TMO_0834 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] C 00740 Riboflavin metabolism [PATH:tmo00740] D TMO_3432 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D TMO_1821 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D TMO_2035 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D TMO_1823 ribD; riboflavin biosynthesis protein ribD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D TMO_3435 deaminase-reductase domain-containing protein K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D TMO_0481 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D TMO_1820 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D TMO_1822 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D TMO_2892 ribF; FAD synthase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D TMO_c0843 nitroreductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D TMO_3178 thiM; Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D TMO_c0164 nudF; MutT/nudix family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D TMO_0843 ubiX; aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:tmo00750] D TMO_0988 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D TMO_3270 pdxY; pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D TMO_b0228 ydbC; putative oxidoreductase K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] D TMO_0918 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D TMO_c0535 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D TMO_1851 pdxA; dimethyladenosine transferase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D TMO_c0631 pdxJ; pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D TMO_1593 pdxJ; Pyridoxal phosphate biosynthesis protein K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D TMO_c0670 thrC; threonine synthase-like protein K01733 thrC; threonine synthase [EC:4.2.3.1] D TMO_2804 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:tmo00760] D TMO_1902 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D TMO_1901 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D TMO_1903 nadC; nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D TMO_2300 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D TMO_c0191 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TMO_0640 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TMO_1540 surE; acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TMO_2970 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D TMO_1693 mazG; MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D TMO_2685 nudC; MutT/NUDIX family protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D TMO_2299 nadE; Glutamine-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D TMO_1709 ygaD; protein (competence- and mitomycin-induced) K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D TMO_a0433 cinA; competence/damage-inducible protein CinA K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D TMO_c0842 npdA; NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D TMO_1218 ppnK; putative sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D TMO_0827 NAD(P)(+) transhydrogenase (AB-specific) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D TMO_0828 NAD(P)(+) transhydrogenase (AB-specific) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D TMO_0829 pntB; NAD(P) transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D TMO_a0287 isochorismatase hydrolase K13995 nicF; maleamate amidohydrolase [EC:3.5.1.107] D TMO_b0386 arylmalonate decarboxylase K01799 nicE; maleate isomerase [EC:5.2.1.1] D TMO_a0282 arylmalonate decarboxylase K01799 nicE; maleate isomerase [EC:5.2.1.1] D TMO_a0378 maleate cis-trans isomerase protein K01799 nicE; maleate isomerase [EC:5.2.1.1] D TMO_a0340 gabD; Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_b0421 gabD; Aldehyde dehydrogenase (NAD(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D TMO_2303 gabD; succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:tmo00770] D TMO_0603 ilvI; acetolactate synthase 2 catalytic subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_d0067 ilvI; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_0559 ilvB; putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_b0061 ilvB; thiamine pyrophosphate protein central region K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_b0301 alsS; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D TMO_d0068 ilvH; acetolactate synthase 3 regulatory subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D TMO_d0069 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D TMO_b0150 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D TMO_1504 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D TMO_c0271 ykpB; Ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D TMO_0478 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D TMO_b0518 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D TMO_1963 coaX; pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D TMO_3558 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D TMO_1693 mazG; MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D TMO_1571 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D TMO_3401 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D TMO_1594 acpS; 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D TMO_c0639 ilvE; aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_c0139 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3171 ilvE; branched-chain amino acid aminotransferase-like protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3195 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_c0378 yeiT; putative oxidoreductase K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D TMO_c0377 yeiA; dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D TMO_c0375 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D TMO_b0181 allC; allantoate amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D TMO_c0379 hyuC; amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:tmo00780] D TMO_0490 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP synthase II) (KAS II) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D TMO_1863 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D TMO_1543 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D TMO_c0537 putative oxidoreductase protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_1865 nodG; dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_2839 fabG; short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_c0839 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_3257 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_0600 fabG; short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_0978 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_a0236 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_1771 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D TMO_2256 enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D TMO_0984 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D TMO_0427 8-amino-7-oxononanoate synthase BioF K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D TMO_0425 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D TMO_0426 bioD; dithiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D TMO_0428 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D TMO_1964 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D TMO_1422 molybdopterin oxidoreductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] D TMO_2652 biotin sulfoxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] C 00785 Lipoic acid metabolism [PATH:tmo00785] D TMO_2593 lipB; lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D TMO_1713 lipA; lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0341 aceE; Pyruvate dehydrogenase (acetyl-transferring) K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D TMO_1717 pdhA; 2-dehydro-3-deoxyphosphooctonate aldolase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D TMO_1716 pdhB; Pyruvate dehydrogenase E1 component, beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D TMO_1715 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D TMO_c0853 acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D TMO_3006 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D TMO_3005 sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D TMO_b0190 2-oxoisovalerate dehydrogenase (alpha subunit) K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D TMO_b0191 2-oxoisovalerate dehydrogenase (beta subunit) K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D TMO_b0192 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D TMO_2788 glycine dehydrogenase subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D TMO_2787 glycine dehydrogenase subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D TMO_2790 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D TMO_2789 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:tmo00790] D TMO_3332 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D TMO_a0278 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D TMO_0526 GTP cyclohydrolase K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D TMO_c0129 folB; dihydroneopterin aldolase family protein K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D TMO_1589 folK; 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D TMO_0912 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D TMO_3237 folC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D TMO_3240 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D TMO_3432 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D TMO_1821 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D TMO_2035 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D TMO_0539 pab; para-aminobenzoate synthase K13950 pabAB; para-aminobenzoate synthetase [EC:2.6.1.85] D TMO_d0020 queD; putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D TMO_3164 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D TMO_0657 phhA; phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D TMO_d0019 ygcF; 7-carboxy-7-deazaguanine synthase-like protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D TMO_d0021 queC; exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D TMO_3097 queF; GTP cyclohydrolase family protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D TMO_1219 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D TMO_b0459 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D TMO_1761 moaC; molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D TMO_c0132 moaE; molybdenum cofactor biosynthesis protein E K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D TMO_b0460 molybdopterin binding domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D TMO_2678 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D TMO_1762 moeA; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D TMO_b0457 moeA; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D TMO_1169 molybdopterin binding domain-containing protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D TMO_1199 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:tmo00670] D TMO_3100 folD; FolD bifunctional protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D TMO_c0280 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_3320 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_1825 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TMO_1841 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D TMO_3120 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D TMO_2699 methionyl-tRNA formyltransferase fmt K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TMO_2790 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D TMO_0826 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D TMO_2448 thyX; thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D TMO_c0563 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D TMO_0825 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D TMO_0894 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:tmo00860] D TMO_2051 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D TMO_1765 Glutamyl-tRNA synthetase, class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_2298 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_1616 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D TMO_0085 Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D TMO_0084 hemD; uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D TMO_2550 hypothetical protein K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D TMO_3405 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D TMO_c0156 hemF; coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D TMO_0440 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D TMO_c0549 amine oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] D TMO_3407 membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D TMO_b0595 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D TMO_3406 hemH; Protoheme ferro-lyase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D TMO_2152 cysG; siroheme synthase protein K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D TMO_2768 cobA; putative uroporphyrin-III C-methyltransferase protein K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D TMO_2335 cysG; siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D TMO_2812 ctaB; putative protoheme IX farnesyltransferase (heme o synthase) K02257 COX10; heme o synthase [EC:2.5.1.141] D TMO_2806 ctaA; cytochrome C oxidase assembly protein, AA3 subunit-controlling protein K02259 COX15; heme a synthase [EC:1.17.99.9] D TMO_2777 cbiX; Sirohydrochlorin cobaltochelatase K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D TMO_2774 cobI; precorrin 2 methylase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D TMO_2773 cobJ; precorrin-3B C17-methyltransferase (cobJ) K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131] D TMO_2772 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D TMO_2770 cobK; precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D TMO_2769 cbiD; cobalt-precorrin-6A synthase K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D TMO_2775 cobL; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D TMO_2776 cobH; Precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D TMO_2767 cobB; Cobyrinic acid a,c-diamide synthase CbiA K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D TMO_2759 cobN; cobaltochelatase K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D TMO_0336 cobS; cobaltochelatase K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D TMO_0335 cobT; cobaltochelatase K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2] D TMO_0122 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D TMO_2758 cobO; cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D TMO_1357 cobQ; adenosylcobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D TMO_3149 cobD; Cobalamin biosynthesis protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D TMO_1356 cobC; putative threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC D TMO_3151 cobP; Adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D TMO_3153 hypothetical protein K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D TMO_3154 cobT; nicotinate-nucleotide--dimethylbenzimidazole K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D TMO_3152 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D TMO_b0085 hypothetical protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D TMO_0620 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:tmo00130] D TMO_2823 4-hydroxybenzoate polyprenyltransferase-related prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D TMO_2825 ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D TMO_0843 ubiX; aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D TMO_0374 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D TMO_3137 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D TMO_3560 ubiE; 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D TMO_3179 coq7; ubiquinone biosynthesis protein COQ7 K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D TMO_0033 menC; N-acylamino acid racemase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D TMO_c0545 putative NAD(P)H dehydrogenase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D TMO_c0421 NAD(P)H quinone oxidoreductase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D TMO_3021 Flavoprotein WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D TMO_b0522 TrpR binding protein WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D TMO_1161 ytfG; oxidoreductase ytfG K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D TMO_c0137 azoB; NmrA family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D TMO_c0718 vllY; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tmo00900] D TMO_0966 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TMO_1776 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D TMO_1707 IspD/ispF bifunctional enzyme K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D TMO_c0178 ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D TMO_0378 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D TMO_2793 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0224 mvaA; hydroxymethylglutaryl-CoA reductase, degradative K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D TMO_0843 ubiX; aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D TMO_0965 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D TMO_c0801 ispB; Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TMO_1778 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:tmo00906] D TMO_1553 squalene K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:tmo00907] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_b0368 acyl-CoA dehydrogenase-like protein K11731 atuD; citronellyl-CoA dehydrogenase [EC:1.3.99.-] D TMO_a0453 Carbamoyl-phosphate synthase L chain ATP-binding protein K13777 atuF; geranyl-CoA carboxylase alpha subunit [EC:6.4.1.5] D TMO_a0454 propionyl-CoA carboxylase K13778 atuC; geranyl-CoA carboxylase beta subunit [EC:6.4.1.5] D TMO_b0367 enoyl-CoA hydratase/isomerase family protein K13779 atuE; isohexenylglutaconyl-CoA hydratase [EC:4.2.1.57] D TMO_3202 pyruvate carboxyltransferase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D TMO_a0285 yngG; Hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] D TMO_2408 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_c0784 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_c0211 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D TMO_0886 cbbT; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics D TMO_c0696 radical SAM domain protein K21224 kedN5; radical SAM C-methyltransferase C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:tmo00523] D TMO_3041 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D TMO_a0326 NAD-dependent epimerase/dehydratase K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25] C 01054 Nonribosomal peptide structures [PATH:tmo01054] D TMO_0890 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D TMO_b0255 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:tmo01053] D TMO_0595 dhbF; syringomycin synthetase K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72] C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:tmo00946] D TMO_a0377 gluA; cellobiase CelA precursor K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis [PATH:tmo00311] D TMO_b0043 acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase K19200 IAL; isopenicillin-N N-acyltransferase like protein D TMO_1613 quiP; peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D TMO_2125 quiP; peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D TMO_a0582 peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D TMO_b0165 Beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:tmo00332] D TMO_2968 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TMO_2969 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:tmo00261] D TMO_b0320 mbtH; MbtH-like protein K05375 mbtH; MbtH protein D TMO_c0612 mbtH; MbtH domain-containing protein K05375 mbtH; MbtH protein D TMO_0687 sulfate adenylyltransferase, large subunit K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D TMO_0688 cysC; NodQ bifunctional enzyme K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D TMO_0686 sulfate adenylyltransferase subunit 2 sulfate adenylatetransferase sat ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D TMO_0375 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D TMO_3255 Aspartate-semialdehyde dehydrogenase, USG-1 K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D TMO_3012 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D TMO_b0467 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D TMO_1584 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D TMO_3026 dapB; Dihydrodipicolinate reductase, bacterial K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D TMO_3476 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tmo00521] D TMO_1348 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D TMO_2830 suhB; inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D TMO_a0056 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D TMO_0878 suhB; fructose-1 6-bisphosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D TMO_3041 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D TMO_1348 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis [PATH:tmo00401] D TMO_0139 tyrC; cyclohexadienyl dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D TMO_b0312 aatB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_b0349 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_c0124 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_0140 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_b0179 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis [PATH:tmo00405] D TMO_2115 phenazine biosynthesis protein PhzF family K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D TMO_3126 mhbM; 3-hydroxybenzoate 6-hydroxylase K20940 phzS; 5-methylphenazine-1-carboxylate 1-monooxygenase [EC:1.14.13.218] D TMO_1752 trpE; Anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D TMO_1758 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D TMO_1866 fabD; S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D TMO_c0537 putative oxidoreductase protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_1865 nodG; dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_2839 fabG; short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_c0839 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_3257 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_0600 fabG; short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_0978 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_a0236 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_2256 enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D TMO_0984 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics [PATH:tmo00998] D TMO_0489 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D TMO_1864 acpP; transit peptide-acyl carrier protein fusion protein K02078 acpP; acyl carrier protein D TMO_2351 cysM; cysteine synthase K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140] D TMO_b0348 phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9] C 00999 Biosynthesis of various plant secondary metabolites [PATH:tmo00999] D TMO_3537 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D TMO_3402 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D TMO_a0377 gluA; cellobiase CelA precursor K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites [PATH:tmo00997] D TMO_2351 cysM; cysteine synthase K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140] D TMO_b0326 iucB; putative acetylase K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:tmo00362] D TMO_b0059 Muconate Cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D TMO_2870 pcaD; alpha/beta hydrolase fold protein K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D TMO_b0317 pcaI; 3-oxoacid CoA-transferase, A subunit K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6] D TMO_b0319 pcaJ; 3-oxoadipate CoA-transferase K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6] D TMO_2408 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_c0784 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_b0429 bphC; glyoxalase/bleomycin resistance protein/dioxygenase K10621 cmtC; 2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase [EC:1.13.11.- 1.13.11.14] D TMO_b0428 oxidoreductase protein K10621 cmtC; 2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase [EC:1.13.11.- 1.13.11.14] D TMO_b0430 decarboxylase protein K10622 cmtD; HCOMODA/2-hydroxy-3-carboxy-muconic semialdehyde decarboxylase [EC:4.1.1.-] D TMO_b0121 todJ; 2-oxopent-4-enoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_1615 mhpD; fumarylacetoacetate (FAA) hydrolase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_b0505 mhpD; fumarylacetoacetate (FAA) hydrolase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_3169 mhpE; pyruvate carboxyltransferase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D TMO_b0123 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D TMO_b0122 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] D TMO_b0431 dmpC; 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D TMO_c0276 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D TMO_2433 pcaG; Protocatechuate 3,4-dioxygenase, alpha subunit(PcaG) K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D TMO_2434 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D TMO_2432 putative 3-carboxy-cis,cis-muconate cycloisomerase (3-carboxymuconate lactonizing enzyme) K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D TMO_2435 pcaC; 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D TMO_b0160 pcaC; carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D TMO_b0115 mhpB; protocatechuate 4,5-dioxygenase subunit beta K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8] D TMO_2431 pobA; 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D TMO_c0783 fadN; 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_0632 peroxisomal bifunctional enzyme K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D TMO_0510 acyl-CoA dehydrogenase domain-containing protein K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D TMO_b0549 glutaryl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_0125 hbdA; 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D TMO_0628 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D TMO_2085 paaH; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:tmo00627] D TMO_0455 nthA; nitrile hydratase alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D TMO_b0395 nthA; alpha subunit of nitrile hydratase K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D TMO_0454 nthB; nitrile hydratase beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D TMO_b0396 nitrile hydratase beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D TMO_b0404 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_c0445 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_a0347 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0385 putative amidotransferase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_1787 nylA; 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_0570 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0047 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0176 amiD; Putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0262 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0445 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D TMO_c0200 nitA; putative amidohydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D TMO_2596 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D TMO_2015 mdlC; thiamine pyrophosphate binding domain-containing protein K01576 mdlC; benzoylformate decarboxylase [EC:4.1.1.7] D TMO_0843 ubiX; aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D TMO_a0552 doxA; rieske (2Fe-2S) domain protein K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component D TMO_2240 ndoR; oxidoreductase FAD-binding subunit K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] D TMO_b0115 mhpB; protocatechuate 4,5-dioxygenase subunit beta K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation [PATH:tmo00364] D TMO_0303 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D TMO_0236 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D TMO_3410 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D TMO_b0059 Muconate Cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D TMO_0455 nthA; nitrile hydratase alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D TMO_b0395 nthA; alpha subunit of nitrile hydratase K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D TMO_0454 nthB; nitrile hydratase beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D TMO_b0396 nitrile hydratase beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] C 00625 Chloroalkane and chloroalkene degradation [PATH:tmo00625] D TMO_0441 dhlA; haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5] D TMO_2931 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_1503 adhA; zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_b0416 alcohol dehydrogenase protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_3459 alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D TMO_0605 dhaS; betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D TMO_1621 Haloacetate dehalogenase H-1 K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] D TMO_1582 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:tmo00361] D TMO_0441 dhlA; haloalkane dehalogenase K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5] D TMO_0303 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D TMO_0236 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D TMO_3410 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D TMO_b0059 Muconate Cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D TMO_1582 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D TMO_1621 Haloacetate dehalogenase H-1 K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] C 00623 Toluene degradation [PATH:tmo00623] D TMO_b0059 Muconate Cycloisomerase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D TMO_0303 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D TMO_0236 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D TMO_3410 carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:tmo00622] D TMO_b0431 dmpC; 2-hydroxymuconic semialdehyde dehydrogenase K10217 dmpC; aminomuconate-semialdehyde/2-hydroxymuconate-6-semialdehyde dehydrogenase [EC:1.2.1.32 1.2.1.85] D TMO_c0276 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D TMO_b0429 bphC; glyoxalase/bleomycin resistance protein/dioxygenase K10621 cmtC; 2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase [EC:1.13.11.- 1.13.11.14] D TMO_b0428 oxidoreductase protein K10621 cmtC; 2,3-dihydroxy-p-cumate/2,3-dihydroxybenzoate 3,4-dioxygenase [EC:1.13.11.- 1.13.11.14] D TMO_b0430 decarboxylase protein K10622 cmtD; HCOMODA/2-hydroxy-3-carboxy-muconic semialdehyde decarboxylase [EC:4.1.1.-] D TMO_b0121 todJ; 2-oxopent-4-enoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_1615 mhpD; fumarylacetoacetate (FAA) hydrolase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_b0505 mhpD; fumarylacetoacetate (FAA) hydrolase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_3169 mhpE; pyruvate carboxyltransferase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D TMO_b0123 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D TMO_b0122 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00633 Nitrotoluene degradation [PATH:tmo00633] D TMO_0606 nemA; GTN reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D TMO_a0552 doxA; rieske (2Fe-2S) domain protein K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component D TMO_2240 ndoR; oxidoreductase FAD-binding subunit K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] C 00642 Ethylbenzene degradation [PATH:tmo00642] D TMO_a0552 doxA; rieske (2Fe-2S) domain protein K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component D TMO_2240 ndoR; oxidoreductase FAD-binding subunit K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] D TMO_2408 acetyl-CoA acetyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_c0784 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D TMO_b0117 hcaE; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like protein K14748 etbAa; ethylbenzene dioxygenase subunit alpha [EC:1.14.12.-] D TMO_b0118 3-phenylpropionate dioxygenase subunit beta K14749 etbAb; ethylbenzene dioxygenase subunit beta [EC:1.14.12.-] D TMO_b0113 todF; alpha/beta hydrolase fold protein K18092 etbD; 2-hydroxy-6-oxo-octa-2,4-dienoate hydrolase [EC:3.7.1.-] C 00643 Styrene degradation [PATH:tmo00643] D TMO_c0717 homogentisate 12-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D TMO_a0557 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D TMO_c0663 maiA; maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D TMO_2306 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D TMO_c0716 fumarylacetoacetate hydrolase family protein K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D TMO_0455 nthA; nitrile hydratase alpha subunit K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D TMO_b0395 nthA; alpha subunit of nitrile hydratase K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D TMO_0454 nthB; nitrile hydratase beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D TMO_b0396 nitrile hydratase beta subunit K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D TMO_b0404 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_c0445 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_a0347 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0385 putative amidotransferase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_1787 nylA; 6-aminohexanoate-cyclic-dimer hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_0570 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0047 amidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0176 amiD; Putative amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0262 Indoleacetamide hydrolase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D TMO_b0445 nitrilase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] D TMO_c0200 nitA; putative amidohydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1] C 00791 Atrazine degradation [PATH:tmo00791] D TMO_1197 Urea amidolyase K01457 atzF; allophanate hydrolase [EC:3.5.1.54] D TMO_1192 isochorismatase family protein K23359 biuH; biuret amidohydrolase [EC:3.5.1.84] D TMO_0423 ywoC; Amidases related to nicotinamidase K23359 biuH; biuret amidohydrolase [EC:3.5.1.84] D TMO_1190 rutB; isochorismatase family protein K23359 biuH; biuret amidohydrolase [EC:3.5.1.84] D TMO_1150 allophanate hydrolase subunit 1 K01941 E6.3.4.6; urea carboxylase [EC:6.3.4.6] D TMO_1730 ureC; Urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D TMO_1729 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D TMO_1728 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:tmo00930] D TMO_2584 ThiJ/PfpI domain protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D TMO_0792 ThiJ/PfpI family protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D TMO_2465 gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D TMO_1906 SMP-30/Gluconolaconase/LRE domain-containing protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D TMO_0225 mmgC; putative acyl-CoA dehydrogenase K06446 DCAA; acyl-CoA dehydrogenase [EC:1.3.99.-] D TMO_3563 enoyl-CoA hydratase/isomerase family protein K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D TMO_c0211 3-hydroxyacyl-CoA dehydrogenase K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] C 00363 Bisphenol degradation D TMO_b0525 putative monooxygenase K14520 hapE; 4-hydroxyacetophenone monooxygenase [EC:1.14.13.84] C 00621 Dioxin degradation [PATH:tmo00621] D TMO_c0276 4-oxalocrotonate tautomerase family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D TMO_b0121 todJ; 2-oxopent-4-enoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_1615 mhpD; fumarylacetoacetate (FAA) hydrolase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_b0505 mhpD; fumarylacetoacetate (FAA) hydrolase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D TMO_3169 mhpE; pyruvate carboxyltransferase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D TMO_b0123 4-hydroxy-2-oxovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39] D TMO_b0122 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10] C 00626 Naphthalene degradation [PATH:tmo00626] D TMO_a0552 doxA; rieske (2Fe-2S) domain protein K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component D TMO_2240 ndoR; oxidoreductase FAD-binding subunit K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] D TMO_a0554 bphA; aromatic-ring-hydroxylating dioxygenase, alpha subunit K18242 nagG; salicylate 5-hydroxylase large subunit [EC:1.14.13.172] D TMO_a0553 aromatic-ring-hydroxylating dioxygenase, beta subunit K18243 nagH; salicylate 5-hydroxylase small subunit [EC:1.14.13.172] D TMO_2931 adhA; alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_1503 adhA; zinc-binding alcohol dehydrogenase family protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_b0416 alcohol dehydrogenase protein K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D TMO_3459 alcohol dehydrogenase class III K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation [PATH:tmo00624] D TMO_a0552 doxA; rieske (2Fe-2S) domain protein K14578 nahAb; naphthalene 1,2-dioxygenase ferredoxin component D TMO_2240 ndoR; oxidoreductase FAD-binding subunit K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] D TMO_b0115 mhpB; protocatechuate 4,5-dioxygenase subunit beta K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8] D TMO_2433 pcaG; Protocatechuate 3,4-dioxygenase, alpha subunit(PcaG) K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D TMO_2434 pcaH; protocatechuate 3,4-dioxygenase, beta subunit K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tmo03020] D TMO_2639 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TMO_2638 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TMO_2608 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TMO_1590 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tmo03010] D TMO_3221 rpsA; Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D TMO_1782 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D TMO_2626 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D TMO_2287 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TMO_2615 rpsE; small subunit ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D TMO_1868 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D TMO_2636 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TMO_2618 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D TMO_1789 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D TMO_2633 rpsJ; Ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D TMO_2609 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D TMO_2637 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D TMO_2610 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D TMO_2619 rpsN; small subunit ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D TMO_3545 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D TMO_3248 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D TMO_2623 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D TMO_1869 rpsR; small subunit ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D TMO_2628 rpsS; small subunit ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D TMO_3564 rpsT; Ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20 D TMO_0833 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D TMO_2643 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D TMO_2629 rplB; Ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D TMO_2632 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D TMO_2631 rplD; 50S ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D TMO_2620 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D TMO_2617 rplF; large subunit ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D TMO_2641 rplL; large subunit ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D TMO_1871 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D TMO_2642 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D TMO_2644 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D TMO_1790 rplM; Ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D TMO_2622 rplN; large subunit ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D TMO_2613 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D TMO_2625 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D TMO_2607 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D TMO_2616 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D TMO_3251 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D TMO_0197 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D TMO_2965 rplU; 50S ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D TMO_2627 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D TMO_2630 rplW; Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D TMO_2621 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D TMO_0308 rplY; 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D TMO_2966 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D TMO_0318 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D TMO_2624 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D TMO_2614 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D TMO_0874 rpmE; large subunit ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D TMO_1812 rpmF; Ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D TMO_2558 rpmG; Ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D TMO_2715 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D TMO_0196 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D TMO_c0481 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D TMO_r04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_rd01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_rc07 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_r33 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_r06 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_r31 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_rc05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_rd03 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_r07 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_r30 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_rc04 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_rd04 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:tmo00970] D TMO_r42 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TMO_r45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TMO_rc08 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TMO_r41 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TMO_r35 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TMO_r44 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TMO_r03 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TMO_r21 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TMO_r16 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TMO_r23 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TMO_r20 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TMO_r17 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TMO_rc02 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TMO_r12 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TMO_r22 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TMO_r43 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TMO_r47 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TMO_r37 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TMO_r26 tRNA-His K14226 tRNA-His; tRNA His D TMO_r05 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TMO_r32 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TMO_rd02 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TMO_rc06 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TMO_r25 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_r27 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_rc11 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_r40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_rc12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_r11 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TMO_r08 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rd06 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rc03 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_r29 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rd05 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rc01 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rc09 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_r15 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TMO_r19 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TMO_rc10 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TMO_r34 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TMO_r10 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TMO_r18 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TMO_r02 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TMO_r46 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TMO_r13 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TMO_r01 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TMO_r14 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TMO_r39 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TMO_r36 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TMO_r38 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TMO_r28 tRNA-Val K14237 tRNA-Val; tRNA Val D TMO_r09 tRNA-Val K14237 tRNA-Val; tRNA Val D TMO_r24 tRNA-Val K14237 tRNA-Val; tRNA Val D TMO_1765 Glutamyl-tRNA synthetase, class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_2298 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_1412 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_0902 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_1276 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_2838 Putative amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_1364 glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_a0414 putative amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_d0009 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_d0010 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TMO_d0008 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D TMO_1130 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TMO_1833 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TMO_c0796 glyQ; Glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D TMO_c0794 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D TMO_0780 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TMO_0528 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TMO_1539 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TMO_2297 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TMO_1679 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TMO_2699 methionyl-tRNA formyltransferase fmt K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TMO_1908 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TMO_3422 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TMO_2891 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TMO_2743 lysS; lysyl-tRNA synthetase, class I K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TMO_1508 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TMO_0264 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TMO_0379 hisS; Histidyl-tRNA synthetase, class IIa K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TMO_0198 pheS; phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TMO_0199 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TMO_c0679 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TMO_3512 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tmo03060] D TMO_2612 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D TMO_2646 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D TMO_1749 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TMO_1547 secD; Preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D TMO_1548 secF; Preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D TMO_c0594 secD; protein-export membrane protein SECD K12257 secDF; SecD/SecF fusion protein D TMO_1546 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D TMO_2712 oxaA; 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TMO_0353 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TMO_3396 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D TMO_3247 signal recognition particle, subunit SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TMO_0166 ftsY; Signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor D TMO_1536 tatA; Sec-independent protein translocase protein tatA/E-like protein K03116 tatA; sec-independent protein translocase protein TatA D TMO_1537 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D TMO_1538 tatC; sec-independent protein translocase protein K03118 tatC; sec-independent protein translocase protein TatC D TMO_1595 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TMO_c0082 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D TMO_2890 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tmo04122] D TMO_c0665 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TMO_c0666 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TMO_2506 rhodanese-related sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D TMO_2802 tusA; SirA-like protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D TMO_c0586 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D TMO_1219 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D TMO_b0459 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D TMO_c0132 moaE; molybdenum cofactor biosynthesis protein E K21142 moaX; MoaE-MoaD fusion protein [EC:2.8.1.12] D TMO_3554 molybdopterin biosynthesis protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D TMO_1761 moaC; molybdenum cofactor biosynthesis protein MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D TMO_b0460 molybdopterin binding domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D TMO_2678 moaB; molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] C 03050 Proteasome C 03018 RNA degradation [PATH:tmo03018] D TMO_2978 rppH; nudix family hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D TMO_c0704 Ribonuclease E and G K08300 rne; ribonuclease E [EC:3.1.26.12] D TMO_1746 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TMO_3546 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TMO_0748 rhlE; DEAD/DEAH box helicase domain-containing protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D TMO_2553 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D TMO_2109 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TMO_3408 transcription termination factor Rho K03628 rho; transcription termination factor Rho D TMO_1962 rnjA; beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D TMO_3474 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TMO_1696 groL; GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TMO_1699 RNA-binding protein Hfq K03666 hfq; host factor-I protein D TMO_3317 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D TMO_c0160 polynucleotide adenylyltransferase region K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:tmo03030] D TMO_3400 dnaQ; DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_0814 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_b0306 polC; polymerase epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_1783 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TMO_2686 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TMO_1678 holB; ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D TMO_3420 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TMO_1845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D TMO_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TMO_1873 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TMO_c0107 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D TMO_1566 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D TMO_c0088 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TMO_2795 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TMO_2746 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D TMO_3211 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D TMO_c0230 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tmo03410] D TMO_3448 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TMO_2749 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TMO_3561 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D TMO_3212 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D TMO_0991 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D TMO_1587 putative uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TMO_a0602 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TMO_2673 DNA polymerase bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TMO_1505 xthA; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TMO_3346 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TMO_3211 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D TMO_1941 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TMO_c0230 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tmo03420] D TMO_1627 transcription-repair coupling factor superfamily II helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TMO_1556 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D TMO_c0125 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D TMO_c0130 uvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C D TMO_c0185 uvrD; UvrD/REP helicase domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TMO_3211 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D TMO_c0230 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:tmo03430] D TMO_3501 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D TMO_2885 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D TMO_c0185 uvrD; UvrD/REP helicase domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TMO_2873 xseA; exonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D TMO_0964 xseB; Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D TMO_1941 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TMO_1566 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D TMO_c0088 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TMO_1783 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TMO_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TMO_2686 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TMO_3420 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TMO_1678 holB; ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D TMO_3400 dnaQ; DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_0814 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_b0306 polC; polymerase epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_1845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D TMO_c0230 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:tmo03440] D TMO_1941 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TMO_1566 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D TMO_c0088 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TMO_0003 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF D TMO_1603 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D TMO_2693 recR; Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR D TMO_1129 recA; RecA protein K03553 recA; recombination protein RecA D TMO_3211 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D TMO_0899 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA D TMO_0900 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TMO_0898 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TMO_1625 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TMO_1783 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TMO_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TMO_2686 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TMO_3420 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TMO_1678 holB; ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D TMO_3400 dnaQ; DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_0814 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_b0306 polC; polymerase epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_1845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D TMO_2989 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:tmo03450] D TMO_a0312 Ku domain-containing protein K10979 ku; DNA end-binding protein Ku D TMO_a0311 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tmo02010] D TMO_1563 cysP; sulfate ABC transporter, sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D TMO_0705 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D TMO_0704 cysT; sulfate transport system permease protein K02046 cysU; sulfate/thiosulfate transport system permease protein D TMO_1562 cysU; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D TMO_0703 cysW; Sulfate ABC transporter permease CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D TMO_1561 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D TMO_0248 cysA; sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D TMO_0321 nrtC; putative nitrate transporter component, nrtA K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D TMO_0322 nrtB; putative nitrate transport system permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D TMO_2146 nrtB; nitrate ABC transporter, inner membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D TMO_0323 cmpD; nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D TMO_2147 nasD; nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D TMO_2731 ssuA; sulfate ester transport system substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D TMO_2730 ssuC; sulfate ester transport system permease protein K15554 ssuC; sulfonate transport system permease protein D TMO_2729 cmpB; sulfate ester transporter permease protein K15554 ssuC; sulfonate transport system permease protein D TMO_2728 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D TMO_2473 putative sulfonate/nitrate transport system substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D TMO_2472 ABC transporter permease protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D TMO_2471 putative ABC transporter K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein D TMO_2979 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D TMO_2980 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D TMO_2981 modC; molybdate transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D TMO_b0350 ABC superfamily ATP binding cassette transporter, binding protein K02012 afuA; iron(III) transport system substrate-binding protein D TMO_2904 extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D TMO_1533 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D TMO_0373 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D TMO_b0351 inner membrane component of ABC transporter K02011 afuB; iron(III) transport system permease protein D TMO_2905 iron(III) transport system permease protein K02011 afuB; iron(III) transport system permease protein D TMO_1534 Fe(3+)-transport system permease protein sfuB K02011 afuB; iron(III) transport system permease protein D TMO_2906 ugpC; ABC transporter component K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D TMO_1535 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D TMO_b0352 potA; ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D TMO_1393 twin-arginine translocation pathway signal K11069 potD; spermidine/putrescine transport system substrate-binding protein D TMO_1390 potI; binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D TMO_1391 potB; binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein D TMO_1392 potA; spermidine/putrescine transport system ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TMO_0290 potF; PotF K11073 potF; putrescine transport system substrate-binding protein D TMO_0287 potI; binding-protein dependent transport system inner membrane protein K11074 potI; putrescine transport system permease protein D TMO_0288 potH; binding-protein dependent transport system inner membrane protein K11075 potH; putrescine transport system permease protein D TMO_0289 potG; putrescine transport ATP-binding protein PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D TMO_2953 proX; Glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D TMO_0868 glycine betaine/proline transport system substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D TMO_2952 proW; histidine transport system permease ABC transporter protein K02001 proW; glycine betaine/proline transport system permease protein D TMO_0869 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D TMO_2951 putative glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D TMO_0870 proV; glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D TMO_1666 osmF; Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein D TMO_1663 yehW; binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D TMO_1665 yehY; binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D TMO_1664 yehX; ABC transporter related protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D TMO_c0523 smoK; sugar ABC transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TMO_b0372 ugpC; lactose transport ATP-binding protein LacK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TMO_c0520 putative ABC transporter-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D TMO_c0521 binding-protein-dependent transport systems inner membrane component K10237 thuF; trehalose/maltose transport system permease protein D TMO_c0522 yurM; maltose/maltodextrin ABC transporter permease protein MalG K10238 thuG; trehalose/maltose transport system permease protein D TMO_a0258 chvE; putative sugar uptake ABC transporter periplasmic solute-binding protein precursor K10546 chvE; putative multiple sugar transport system substrate-binding protein D TMO_a0256 xylH; inner membrane permease of D-xylose ABC transporter K10547 gguB; putative multiple sugar transport system permease protein D TMO_a0257 araG; ABC transporter related protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TMO_0822 mlaC; toluene tolerance transporter K07323 mlaC; phospholipid transport system substrate-binding protein D TMO_c0739 ABC superfamily ATP binding cassette transporter substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D TMO_1399 ABC transport system substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D TMO_1875 putative ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D TMO_1401 ABC transport system permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D TMO_1876 putative ribonucleotide transport ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D TMO_1400 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D TMO_0676 Transcriptional activator protein med K07335 bmpA; basic membrane protein A and related proteins D TMO_0863 Basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D TMO_c0404 Bmp family membrane protein K07335 bmpA; basic membrane protein A and related proteins D TMO_1195 simple sugar transport system substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D TMO_0861 yufP; permease protein of sugar ABC transporter K23535 nupB; general nucleoside transport system permease protein D TMO_c0406 yufP; inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D TMO_1194 putative simple sugar transport system permease protein K23535 nupB; general nucleoside transport system permease protein D TMO_0674 yufP; inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D TMO_c0407 branched chain amino acid ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D TMO_0673 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D TMO_0860 yufQ; inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D TMO_1193 ABC transporter permease protein K23536 nupC; general nucleoside transport system permease protein D TMO_0675 yufO; ABC transporter component K23537 nupA; general nucleoside transport system ATP-binding protein D TMO_c0405 yufO; ABC transporter related protein K23537 nupA; general nucleoside transport system ATP-binding protein D TMO_0862 yufO; ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D TMO_1191 yufO; putative ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D TMO_1289 alsB; D-allose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein D TMO_1291 inner-membrane translocator K10440 rbsC; ribose transport system permease protein D TMO_1146 methyl-galactoside transport system permease protein K10440 rbsC; ribose transport system permease protein D TMO_1147 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D TMO_1290 rbsA; ABC transporter related protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D TMO_a0248 ytfQ; periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein D TMO_a0246 ytfT; sugar ABC transporter permease protein K23509 ytfT; galactofuranose transport system permease protein D TMO_a0245 yjfF; inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein D TMO_a0247 ytfR; sugar ABC transporter ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D TMO_b0098 sugar ABC transporter K17321 glpV; glycerol transport system substrate-binding protein D TMO_b0101 sugar ABC transporter K17322 glpP; glycerol transport system permease protein D TMO_b0100 yurM; binding-protein-dependent transport systems inner membrane component K17323 glpQ; glycerol transport system permease protein D TMO_b0103 ABC transporter related protein K17324 glpS; glycerol transport system ATP-binding protein D TMO_b0102 ABC transporter related protein K17325 glpT; glycerol transport system ATP-binding protein D TMO_3303 ugpB; extracellular solute-binding protein, family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D TMO_1319 ugpB; extracellular solute-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D TMO_3226 ugpB; sn-glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D TMO_3304 ugpA; SN-glycerol-3-phosphate ABC transporter, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D TMO_1318 yurN; inner membrane component of binding-protein-dependent transport system K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D TMO_3227 ugpA; sn-glycerol-3-phosphate ABC transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D TMO_3305 ugpE; sn-glycerol-3-phosphate ABC transporter, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D TMO_1317 araQ; ABC superfamily ATP binding cassette transporter, membrane protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D TMO_3228 ugpE; sn-glycerol-3-phosphate transport system permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D TMO_3306 ugpC; glycerol-3-phosphate transporter ATP-binding subunit K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D TMO_1320 ugpC; ABC superfamily ATP binding cassette transporter, ABC protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D TMO_b0347 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D TMO_3505 sphX; phosphate ABC transporter, periplasmic binding protein K02040 pstS; phosphate transport system substrate-binding protein D TMO_b0346 pstC; phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D TMO_3506 yqgH; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D TMO_b0345 pstA; phosphate ABC transporter permease protein K02038 pstA; phosphate transport system permease protein D TMO_3507 yqgI; phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D TMO_b0344 pstB; high-affinity phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D TMO_3508 Phosphate import ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D TMO_2091 phnD; binding protein component of ABC phosphonate transporter K02044 phnD; phosphonate transport system substrate-binding protein D TMO_2090 phnE; phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D TMO_2092 phnC; Phosphonates ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D TMO_3086 aotP; Arginine/ornithine transport ATP-binding protein aotP K10021 occP; octopine/nopaline transport system ATP-binding protein [EC:7.4.2.1] D TMO_b0466 aapJ; general L-amino acid transport system substrate-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D TMO_2514 aapJ; general L-amino acid transport system substrate-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D TMO_b0465 yhdY; amino acid ABC transporter permease K09970 aapQ; general L-amino acid transport system permease protein D TMO_2513 yhdX; putative amino acid ABC transporter permease protein K09970 aapQ; general L-amino acid transport system permease protein D TMO_2512 aapM; general L-amino acid transport system permease protein K09971 aapM; general L-amino acid transport system permease protein D TMO_2511 aapP; ABC transporter component K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D TMO_b0464 aapP; General L-amino acid transport ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D TMO_3089 hisQ; polar amino acid ABC transporter, inner membrane subunit K23056 K23056; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D TMO_3090 occM; polar amino acid transport system permease protein K23057 K23057; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D TMO_b0089 artI; extracellular solute-binding protein K23061 lhpP; hydroxyproline transporter system substrate-binding protein D TMO_b0090 yecS; ABC transporter, membrane spanning protein (amino acid) K23062 lhpM; hydroxyproline transport system permease protein D TMO_b0091 gltK; putative amino acid ABC transporter permease protein K23063 lhpN; hydroxyproline transport system permease protein D TMO_b0092 glnQ; putative amino acid ABC transporter ATP-binding protein K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1] D TMO_0326 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0466 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0475 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0932 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0501 amiC; two component sensor kinase K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0512 Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0433 putative branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0575 Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0768 livK; Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_3066 branched-chain amino acid transport system substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2012 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0164 putative branched-chain amino acid transport system substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_b0239 ABC branched chain amino acid transporter, periplasmic ligandbinding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2138 putative ABC branched-chain amino transporter, periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0793 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0800 putative periplasmic substrate-binding protein, ABC-type amino acid ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2044 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0637 ABC transporter, periplasmic branched chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_3096 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_3499 branched chain amino acid ABC transporter amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0294 braC; branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2134 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0399 branched-chain amino acid transport system substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0419 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_b0186 branched-chain amino acid ABC superfamily ATP binding cassette transporter, binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_b0440 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0227 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0928 ABC-type branched-chain amino acid transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_1642 putative branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0499 livK; putative leucine/isoleucine/valine-binding protein precursor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0761 braC; extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0751 livH; hydrophobic amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D TMO_c0931 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_1646 livH; putative ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_c0432 branched-chain amino acid ABC transporter K01997 livH; branched-chain amino acid transport system permease protein D TMO_c0770 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_3064 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_2009 braD; putative amino acid or sugar ABC transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0166 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0496 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_b0238 braD; ABC branched chain amino acid transporter, inner membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D TMO_0801 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_2049 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_0636 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_3092 livH; branched-chain amino acid ABC transporter (permease) K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0295 braD; ABC branched chain amino acid family transporter, inner membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D TMO_2135 branched chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0228 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0400 braD; branched-chain amino acid ABC transporter permease protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0418 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_b0441 braD; ABC superfamily ATP binding cassette transporter, membrane protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_0927 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_0327 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_0802 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_0328 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_2048 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_1645 livM; branched chain amino acid ABC transporter inner membrane protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_0635 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_2136 livM; ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D TMO_3065 livM; branched-chain amino acid transport system permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_3093 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0296 braE; High-affinity branched-chain amino acid transport system permease protein braE K01998 livM; branched-chain amino acid transport system permease protein D TMO_2008 putative amino acid or sugar ABC transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0165 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0495 livM; ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_b0237 ABC branched chain amino acid transporter, inner membrane subunit K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0229 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0401 amino acid ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0417 livM; putative ABC transport system, membrane protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_b0442 livM; ABC superfamily ATP binding cassette transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0930 ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0752 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0769 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0929 livG; ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_c0431 braF; ABC superfamily ATP binding cassette transporter, ABC protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_c0749 livG; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_c0771 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_3062 braF; high-affinity branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_2011 braF; ABC transporter ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0168 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0498 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_b0236 livG; ABC branched chain amino acid transporter, ATPase subunit K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0803 livG; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_2047 livG; ABC transporter component K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_1644 braF; High-affinity branched-chain amino acid transport ATP-binding protein braF K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0634 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_3094 braF; branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0297 braF; branched-chain amino acid ABC transporter ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0925 braF; branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_2132 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0230 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0402 lptB; ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0416 braF; putative ABC transport system, ATP-bidning protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_b0443 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0330 livF; ABC transporter component K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_2046 livF; branched-chain amino acid transport system ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_0924 livF; branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_1643 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_0633 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_2133 livF; ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_3067 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_3095 livF; branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0298 braG; High-affinity branched-chain amino acid transport ATP-binding protein braG K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_2010 livF; High-affinity branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0163 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0497 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_b0235 livF; ABC branched chain amino acid transporter, ATPase subunit K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0231 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0403 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0415 braG; branched chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_b0444 livF; branched-chain amino acid ABC superfamily ATP binding cassette transporter, ABC protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0928 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0430 braG; putative high-affinity branched-chain amino acid transport ATP-binding proteinputative K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0750 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0767 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_1015 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D TMO_1766 plpC; NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D TMO_3493 YaeC family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D TMO_3494 metQ; D-methionine ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein D TMO_d0017 metI; binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D TMO_d0018 metN; D-methionine transport system ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D TMO_1722 amiC; ABC-type branched-chain amino acid transport system, periplasmic component K11959 urtA; urea transport system substrate-binding protein D TMO_0499 amiC; Aliphatic amidase expression-regulating protein K11959 urtA; urea transport system substrate-binding protein D TMO_b0472 urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein D TMO_b0398 amino acid ABC transporter K11959 urtA; urea transport system substrate-binding protein D TMO_b0409 putative Leu/Ile/Val/Thr/Ala-binding protein K11959 urtA; urea transport system substrate-binding protein D TMO_b0410 ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D TMO_b0473 braD; urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D TMO_0498 braD; putative permease component of ABC transporter K11960 urtB; urea transport system permease protein D TMO_1723 livH; High-affinity branched-chain amino acid transport system permease protein livH K11960 urtB; urea transport system permease protein D TMO_b0408 livH; urea or short-chain amide ABC transporter K11960 urtB; urea transport system permease protein D TMO_b0474 urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D TMO_1724 livM; branched chain amino acid ABC transporter permease K11961 urtC; urea transport system permease protein D TMO_0497 livM; putative branched-chain amino acid ABC transporter, permease protein K11961 urtC; urea transport system permease protein D TMO_b0407 urea or short-chain amide ABC transporter K11961 urtC; urea transport system permease protein D TMO_1725 braF; putative ATP-binding component of ABC transporter K11962 urtD; urea transport system ATP-binding protein D TMO_b0475 braF; urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D TMO_0496 braF; branched chain amino acid ABC transporter ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D TMO_b0406 braF; urea or short-chain amide ABC transporter K11962 urtD; urea transport system ATP-binding protein D TMO_0495 braG; putative branched-chain amino acid ABC transporter, ATP-binding protein K11963 urtE; urea transport system ATP-binding protein D TMO_1726 livF; ABC transporter, nucleotide binding/ATPase protein (urea/amide) K11963 urtE; urea transport system ATP-binding protein D TMO_b0476 livF; putative ABC transporter ATP-binding component K11963 urtE; urea transport system ATP-binding protein D TMO_b0405 livF; ABC superfamily ATP binding cassette transporter, ABC protein K11963 urtE; urea transport system ATP-binding protein D TMO_3019 dppA; dipeptide-binding ABC transporter substrate-binding component K12368 dppA; dipeptide transport system substrate-binding protein D TMO_3018 dppB; nickel-transporting ATPase K12369 dppB; dipeptide transport system permease protein D TMO_3017 dppC; peptide/nickel transport system permease protein K12370 dppC; dipeptide transport system permease protein D TMO_3016 dppD; dipeptide ABC superfamily ATP binding cassette transporter, ABC protein K12371 dppD; dipeptide transport system ATP-binding protein D TMO_3015 dppF; DppF K12372 dppF; dipeptide transport system ATP-binding protein D TMO_3188 ABC-type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein D TMO_3187 yejB; peptide/nickel transport system permease protein K13894 yejB; microcin C transport system permease protein D TMO_3186 yejE; binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein D TMO_3185 yejF; putative ATP-binding component of ABC transporter K13896 yejF; microcin C transport system ATP-binding protein D TMO_a0121 fhuD; Iron(3+)-hydroxamate-binding protein fhuD K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D TMO_b0221 periplasmic component, ABC-type hydroxamate-dependent iron transport system K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D TMO_b0333 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D TMO_d0052 iron complex transport system substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D TMO_b0219 fhuB; transporter K23228 fhuB; ferric hydroxamate transport system permease protein D TMO_b0334 fhuB; iron-hydroxamate transporter permease subunit K23228 fhuB; ferric hydroxamate transport system permease protein D TMO_d0051 fhuB; transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein D TMO_a0122 fhuC; iron-hydroxamate transporter ATP-binding subunit K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D TMO_b0220 fhuC; ABC-type hydroxamate-dependent iron transport system, ATPase component K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D TMO_b0332 fhuC; ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D TMO_d0048 fhuC; ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D TMO_1385 znuA; periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D TMO_1388 znuB; permease of ABC zinc transporter ZnuB K09816 znuB; zinc transport system permease protein D TMO_1387 znuC; high-affinity zinc uptake system ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TMO_2734 iron ABC transporter substrate binding protein K11604 sitA; manganese/iron transport system substrate-binding protein D TMO_2736 yfeC; Chelated iron transport system membrane protein yfeC K11605 sitC; manganese/iron transport system permease protein D TMO_2737 yfeD; Chelated iron transport system membrane protein yfeD K11606 sitD; manganese/iron transport system permease protein D TMO_2735 yfeB; ABC transporter related protein K11607 sitB; manganese/iron transport system ATP-binding protein D TMO_2937 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein D TMO_2938 cbiM; cobalamin biosynthesis protein cbim K02007 cbiM; cobalt/nickel transport system permease protein D TMO_2935 cobalt transport integral membrane protein K02008 cbiQ; cobalt/nickel transport system permease protein D TMO_2936 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D TMO_2934 Cobalt transport protein ATP-binding subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein D TMO_0728 bioY; putative biotin transporter bioY K03523 bioY; biotin transport system substrate-specific component D TMO_2594 bioY; putative biotin transporter bioY K03523 bioY; biotin transport system substrate-specific component D TMO_1951 lolC; lipoprotein-releasing system permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D TMO_1950 lolD; ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TMO_2997 lolD; ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TMO_3080 hypothetical protein K02196 ccmD; heme exporter protein D D TMO_3079 cycZ; heme exporter protein CcmC K02195 ccmC; heme exporter protein C D TMO_3078 helB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D TMO_3077 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D TMO_1847 putative permease K07091 lptF; lipopolysaccharide export system permease protein D TMO_1848 putative permease K11720 lptG; lipopolysaccharide export system permease protein D TMO_0178 ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D TMO_0132 cell division protein K09811 ftsX; cell division transport system permease protein D TMO_0131 ftsE; putative ATPase involved in cell division K09812 ftsE; cell division transport system ATP-binding protein D TMO_3278 ABC transporter related protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D TMO_3277 ygaD; ABC transporter ATP-binding/permease K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D TMO_2831 msbA; ABC-type multidrug transport system, ATPase and permease components K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D TMO_2653 atm1; Iron-sulfur clusters transporter K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D TMO_b0036 ABC transporter related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D TMO_1065 paxB; putative exotoxin translocation ATP-binding protein PaxB K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D TMO_0961 aprD; ABC transporter, ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D TMO_a0190 cydC; transport ATP-binding protein CYDC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D TMO_a0191 cydD; ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D TMO_2360 macB; ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D TMO_0956 macB; ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D TMO_b0335 pyoverdine ABC export system, permease/ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D TMO_d0049 pyoverdine biosynthesis protein PvdE K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D TMO_c0837 yddA; putative ABC transport system, ATP-binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:tmo02060] D TMO_0171 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D TMO_0172 manX; PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D TMO_0420 fruB; phosphotransferase system, enzyme I K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D TMO_0422 fruA; PTS system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D TMO_0421 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D TMO_0376 ptsP; Signal transduction protein containing GAF and PtsI domains K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D TMO_0175 ptsN; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:tmo03070] D TMO_1910 bepC; TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein D TMO_1517 bepC; type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D TMO_1918 hypothetical protein K02455 gspF; general secretion pathway protein F D TMO_1917 pulE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D TMO_1547 secD; Preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D TMO_c0594 secD; protein-export membrane protein SECD K12257 secDF; SecD/SecF fusion protein D TMO_1548 secF; Preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D TMO_2646 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D TMO_1749 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TMO_2612 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D TMO_1546 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D TMO_2712 oxaA; 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TMO_0353 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TMO_0166 ftsY; Signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor D TMO_3396 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D TMO_3247 signal recognition particle, subunit SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TMO_1536 tatA; Sec-independent protein translocase protein tatA/E-like protein K03116 tatA; sec-independent protein translocase protein TatA D TMO_1537 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D TMO_1538 tatC; sec-independent protein translocase protein K03118 tatC; sec-independent protein translocase protein TatC D TMO_3339 traG; TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D TMO_2197 traG; TRAG protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D TMO_a0068 vgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG D TMO_a0095 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG D TMO_a0092 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D TMO_a0080 type VI secretion lipoprotein, VC_A0113 family K11906 vasD; type VI secretion system protein VasD D TMO_a0077 hypothetical protein K11891 impL; type VI secretion system protein ImpL D TMO_a0078 hypothetical protein K11892 impK; type VI secretion system protein ImpK D TMO_a0082 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D TMO_a0073 ppkA-related protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D TMO_a0081 FHA domain-containing protein K11913 fha1; type VI secretion system protein D TMO_a0075 prpC; Ser/Thr protein phosphatase K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] B B 09132 Signal transduction C 02020 Two-component system [PATH:tmo02020] D TMO_3503 phoR; two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D TMO_3510 phoB; Response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D TMO_b0347 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D TMO_3505 sphX; phosphate ABC transporter, periplasmic binding protein K02040 pstS; phosphate transport system substrate-binding protein D TMO_c0142 Signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D TMO_c0141 Response regulator receiver:Transcriptional regulatory protein, C-terminal protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D TMO_2651 degP; putative serine protease do-like protein K04771 degP; serine protease Do [EC:3.4.21.107] D TMO_d0063 degP; Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107] D TMO_c0014 cusS; sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D TMO_c0013 cusR; two component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D TMO_1077 flagellin K02406 fliC; flagellin D TMO_1078 flagellin domain protein K02406 fliC; flagellin D TMO_1242 pomA; chemotaxis protein K02556 motA; chemotaxis protein MotA D TMO_2876 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D TMO_0451 kdpD; two-component system, OmpR family, sensor histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D TMO_0452 kdpE; two-component system, response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D TMO_0448 kdpA; potassium-transporting ATPase subunit A K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D TMO_0449 kdpB; potassium-translocating P-type ATPase B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D TMO_0450 kdpC; potassium-transporting ATPase subunit C K01548 kdpC; potassium-transporting ATPase KdpC subunit D TMO_0372 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D TMO_0370 tctD; two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D TMO_0367 52.8 kDa protein in TAR-I ttuC' 3'region K07793 tctA; putative tricarboxylic transport membrane protein D TMO_2275 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D TMO_c0584 integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein D TMO_0368 tricarboxylic transport K07794 tctB; putative tricarboxylic transport membrane protein D TMO_2276 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D TMO_c0583 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D TMO_0369 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D TMO_2277 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D TMO_c0582 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D TMO_2806 ctaA; cytochrome C oxidase assembly protein, AA3 subunit-controlling protein K02259 COX15; heme a synthase [EC:1.17.99.9] D TMO_0001 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D TMO_3498 mprF; putative membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D TMO_2058 chvG; sensor histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D TMO_2059 chvI; transcriptional regulatory protein ChvI K14981 chvI; two-component system, OmpR family, response regulator ChvI D TMO_3524 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D TMO_3271 citE; citrate lyase beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D TMO_a0493 HpcH/HpaI aldolase/citrate lyase family K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D TMO_a0159 Citryl-CoA lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D TMO_a0444 Citryl-CoA lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D TMO_b0259 citrate lyase beta chain K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D TMO_b0451 narG; nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D TMO_b0452 narY; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D TMO_b0454 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D TMO_b0453 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D TMO_1120 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D TMO_c0486 fatty acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45] D TMO_3492 glnD; [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D TMO_1992 glnB; Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D TMO_1705 nitrogen regulation protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D TMO_1704 ntrC; two-component response regulator, nitrogen regulation response K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D TMO_0291 puuA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_1993 glnA; L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_1703 Nitrogen regulation protein, NtrY, Signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D TMO_1702 ntrX; response regulator containing CheY-like receiver K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0527 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D TMO_a0152 two-component sensor histidine kinase protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D TMO_a0153 dctD; two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D TMO_c0528 dctD; C4-dicarboxylate transport transcriptional regulatory protein dctD K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D TMO_c0526 dctA; sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D TMO_0177 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D TMO_1227 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TMO_3495 mcp3; methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_0214 mcp4; Pmethyl-accepting chemotaxis receptor/sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_0221 htr5; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_0229 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_1557 Methyl-accepting chemotaxis protein signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1575 mcp2; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1632 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1634 pilJ; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_0581 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2137 mcp4; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_0749 bdlA; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1270 bdlA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2494 mcp4; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2495 dcrA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2911 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2912 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_a0193 dcrA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_b0257 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0509 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0510 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0511 mcp3; methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0715 bdlA; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D TMO_1224 cheW; Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW D TMO_1223 cheA; CheA Signal transduction histidine Kinases (STHK) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TMO_1103 cheY; Response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TMO_1225 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TMO_1226 cheB; chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TMO_c0561 sensor histidine kinase (non-motile and phage-resistance protein) K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D TMO_3174 divJ; putative non-motile and phage-resistance protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D TMO_1251 PAS/PAC sensor signal transduction histidine kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D TMO_2559 pleD; response regulator With diguanylate cyclase (GGDEF) domain protein K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D TMO_1630 pleD; response regulator/GGDEF domain protein K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D TMO_2560 divK; response regulator receiver protein K11443 divK; two-component system, cell cycle response regulator DivK D TMO_1127 cell cycle histidine kinase CckA K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D TMO_1222 hypothetical protein K13588 chpT; histidine phosphotransferase ChpT D TMO_1228 ctrA; two-component response regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA D TMO_0242 dctP; putative C4 dicarboxylate binding protein K11688 dctP; C4-dicarboxylate-binding protein DctP D TMO_0664 dctP; c4-dicarboxylate-binding periplasmic protein K11688 dctP; C4-dicarboxylate-binding protein DctP D TMO_0243 Tripartite ATP-independent periplasmic transporter DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D TMO_a0437 tripartite ATP-independent periplasmic transporter DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D TMO_c0363 C4-dicarboxylate TRAP-T family tripartite ATP-independent periplasmic transporter, membrane protein, large subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0438 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_0244 siaT; TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_0147 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_1406 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_0558 putative membrane permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_1804 TRAP-T family protein transporter, DctM (12 TMs) subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_2126 siaT; TRAP transporter, DctM-like membrane protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_2526 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_0700 siaT; trap dicarboxylate transporter, dctm subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_1274 siaT; TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0176 siaT; putative DctM (C4-dicarboxylate permease, large subunit) K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0515 trap dicarboxylate transporter, dctm subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_b0566 Putative TRAP transporter large permease protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0389 siaT; TRAP transporter, DctM-like membrane protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0537 Putative TRAP transporter large permease protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0573 TRAP-T family protein transporter, DctM (12 TMs) subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_b0289 siaT; TRAP transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_c0258 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_1241 flbD; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC D TMO_0233 ntcA; cAMP-binding protein - catabolite protein activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_0037 transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_2995 transcriptional regulator, Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_b0210 nte1; transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_0023 regB; two-component sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D TMO_0024 regA; photosynthetic apparatus regulatory protein RegA K15012 regA; two-component system, response regulator RegA D TMO_c0154 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D TMO_c0152 Cytochrome c1, heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D TMO_c0153 petB; Cytochrome b/b6-like protein K00410 fbcH; ubiquinol-cytochrome c reductase cytochrome b/c1 subunit D TMO_c0270 diheme cytochrome c SoxE K08738 CYC; cytochrome c D TMO_c0847 cytochrome c family protein K08738 CYC; cytochrome c D TMO_3190 cycM; putative CytoChrome c-like protein K08738 CYC; cytochrome c D TMO_0867 putative cache sensor protein K08738 CYC; cytochrome c D TMO_2279 fixN; cbb3-type cytochrome c oxidase subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D TMO_c0924 fixN; cbb3-type cytochrome c oxidase subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D TMO_2280 FixO1 cytochrome C oxidase subunit K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D TMO_c0923 cytochrome-c oxidase FixO2 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D TMO_2281 hypothetical protein K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D TMO_2282 petJ; cytochrome-c oxidase fixP chain K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D TMO_c0922 petJ; cytochrome-c oxidase fixP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D TMO_a0189 cydA; cytochrome D ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D TMO_b0108 cydA; cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D TMO_a0188 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D TMO_b0107 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D TMO_1910 bepC; TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein D TMO_1517 bepC; type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D TMO_0711 kpsD; polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein D TMO_0413 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D TMO_a0577 fecR; anti-FecI sigma factor, FecR K07165 fecR; transmembrane sensor D TMO_b0310 fecR; transmembrane sensor K07165 fecR; transmembrane sensor D TMO_b0357 fecR; putative FecR K07165 fecR; transmembrane sensor D TMO_c0554 FecR protein K07165 fecR; transmembrane sensor D TMO_1301 sigma factor regulatory protein FecR/PupR family K07165 fecR; transmembrane sensor D TMO_2268 fecR; two component sensor kinase K07165 fecR; transmembrane sensor D TMO_2587 fecR; two component sensor histidine kinase FecR/PupR K07165 fecR; transmembrane sensor D TMO_1042 putative FecR K07165 fecR; transmembrane sensor D TMO_2702 fecR; putative FecR K07165 fecR; transmembrane sensor D TMO_d0054 fecR; FecR protein K07165 fecR; transmembrane sensor D TMO_b0370 two-component hybrid sensor and regulator K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:tmo04148] D TMO_a0012 arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D TMO_1614 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D TMO_1581 Orn/DAP/Arg decarboxylase 2 K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D TMO_c0154 petA; ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tmo02024] D TMO_c0332 cqsA; CAI-1 autoinducer synthase K10915 cqsA; CAI-1 autoinducer synthase [EC:2.3.-.-] D TMO_1699 RNA-binding protein Hfq K03666 hfq; host factor-I protein D TMO_1752 trpE; Anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D TMO_1758 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D TMO_2301 phospho-2-dehydro-3-deoxyheptonate aldolase 1 K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D TMO_2115 phenazine biosynthesis protein PhzF family K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D TMO_0452 kdpE; two-component system, response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D TMO_c0698 rhlI; N-acyl-L-homoserine lactone synthetase MsaI K18096 bjaI; acyl-homoserine lactone synthase [EC:2.3.1.228 2.3.1.229 2.3.1.-] D TMO_c0697 rhiR; LuxR family transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D TMO_2195 trbB; conjugal transfer protein trbB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D TMO_2194 conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D TMO_2193 type IV secretory pathway VirB3 family protein K20529 trbD; type IV secretion system protein TrbD D TMO_2192 trbE; conjugal transfer ATPase TrbE K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D TMO_2191 P-type conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D TMO_2190 trbL; P-type conjugative transfer protein TrbL K07344 trbL; type IV secretion system protein TrbL D TMO_2189 trbF; conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D TMO_2188 trbG; P-type conjugative transfer protein TrbG K20532 trbG; type IV secretion system protein TrbG D TMO_2187 trbI; conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D TMO_0019 spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_0434 ABC transporter, periplasmic solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_2533 ydcS; extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_2845 extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_d0030 spermidine/putrescine transport system substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_3489 family 1 extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_0016 potC; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_0436 potC; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_2842 potI; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_d0028 phnV; ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_d0031 potB; Spermidine/putrescine transport system permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_2536 ydcV; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_3487 modB; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_3488 cysW; putative permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_0017 potH; binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D TMO_0435 potB; binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D TMO_2843 potB; binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D TMO_2535 ydcU; binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D TMO_0018 potA; putative spermidine/putrescine ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_0433 potA; ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_2844 potA; ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_d0029 potA; ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_2534 ydcT; ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_3486 potA; putative ABC transporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_0326 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0466 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0475 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0932 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0501 amiC; two component sensor kinase K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0512 Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0433 putative branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0575 Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0768 livK; Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_3066 branched-chain amino acid transport system substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2012 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0164 putative branched-chain amino acid transport system substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_b0239 ABC branched chain amino acid transporter, periplasmic ligandbinding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2138 putative ABC branched-chain amino transporter, periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0793 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0800 putative periplasmic substrate-binding protein, ABC-type amino acid ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2044 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0637 ABC transporter, periplasmic branched chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_3096 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_3499 branched chain amino acid ABC transporter amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0294 braC; branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2134 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0399 branched-chain amino acid transport system substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0419 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_b0186 branched-chain amino acid ABC superfamily ATP binding cassette transporter, binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_b0440 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0227 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0928 ABC-type branched-chain amino acid transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_1642 putative branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0499 livK; putative leucine/isoleucine/valine-binding protein precursor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0761 braC; extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0751 livH; hydrophobic amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D TMO_c0931 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_1646 livH; putative ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_c0432 branched-chain amino acid ABC transporter K01997 livH; branched-chain amino acid transport system permease protein D TMO_c0770 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_3064 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_2009 braD; putative amino acid or sugar ABC transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0166 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0496 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_b0238 braD; ABC branched chain amino acid transporter, inner membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D TMO_0801 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_2049 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_0636 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_3092 livH; branched-chain amino acid ABC transporter (permease) K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0295 braD; ABC branched chain amino acid family transporter, inner membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D TMO_2135 branched chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0228 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0400 braD; branched-chain amino acid ABC transporter permease protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0418 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_b0441 braD; ABC superfamily ATP binding cassette transporter, membrane protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_0927 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_0327 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_0802 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_0328 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_2048 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_1645 livM; branched chain amino acid ABC transporter inner membrane protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_0635 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_2136 livM; ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D TMO_3065 livM; branched-chain amino acid transport system permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_3093 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0296 braE; High-affinity branched-chain amino acid transport system permease protein braE K01998 livM; branched-chain amino acid transport system permease protein D TMO_2008 putative amino acid or sugar ABC transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0165 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0495 livM; ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_b0237 ABC branched chain amino acid transporter, inner membrane subunit K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0229 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0401 amino acid ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0417 livM; putative ABC transport system, membrane protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_b0442 livM; ABC superfamily ATP binding cassette transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0930 ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0752 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0769 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0929 livG; ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_c0431 braF; ABC superfamily ATP binding cassette transporter, ABC protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_c0749 livG; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_c0771 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_3062 braF; high-affinity branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_2011 braF; ABC transporter ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0168 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0498 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_b0236 livG; ABC branched chain amino acid transporter, ATPase subunit K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0803 livG; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_2047 livG; ABC transporter component K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_1644 braF; High-affinity branched-chain amino acid transport ATP-binding protein braF K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0634 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_3094 braF; branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0297 braF; branched-chain amino acid ABC transporter ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0925 braF; branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_2132 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0230 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0402 lptB; ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0416 braF; putative ABC transport system, ATP-bidning protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_b0443 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0330 livF; ABC transporter component K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_2046 livF; branched-chain amino acid transport system ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_0924 livF; branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_1643 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_0633 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_2133 livF; ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_3067 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_3095 livF; branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0298 braG; High-affinity branched-chain amino acid transport ATP-binding protein braG K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_2010 livF; High-affinity branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0163 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0497 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_b0235 livF; ABC branched chain amino acid transporter, ATPase subunit K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0231 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0403 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0415 braG; branched chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_b0444 livF; branched-chain amino acid ABC superfamily ATP binding cassette transporter, ABC protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0928 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0430 braG; putative high-affinity branched-chain amino acid transport ATP-binding proteinputative K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0750 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0767 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0786 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0766 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_3063 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0167 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0366 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_2034 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_1434 lcfA; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0226 Acyl-CoA synthetase/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0689 lcfA; 4-coumarate-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0512 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0234 fadD; AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0484 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0233 ntcA; cAMP-binding protein - catabolite protein activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_0037 transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_2995 transcriptional regulator, Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_b0210 nte1; transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_1386 ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D TMO_3432 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D TMO_1823 ribD; riboflavin biosynthesis protein ribD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D TMO_3435 deaminase-reductase domain-containing protein K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D TMO_c0713 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D TMO_3519 RND efflux membrane fusion protein precursor K18306 mexH; membrane fusion protein, multidrug efflux system D TMO_3520 RND efflux transporter K18307 mexI; multidrug efflux pump D TMO_2665 silC; RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D TMO_0296 hbpA; extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_0270 gsiB; ABC transporter substrate binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_b0493 gsiB; extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_c0346 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_2724 gsiB; extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_2847 gsiB; peptide/nickel transport system substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_c0450 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_a0349 ABC superfamily ATP binding cassette transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_b0038 ABC superfamily ATP binding cassette transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_b0382 extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_1418 extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_2025 agpA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_1030 ABC superfamily ATP binding cassette transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_1185 dppA; oligopeptide ABC transpoter oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_3347 gsiB; extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_a0027 putative ABC transporter, periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_a0131 hbpA; extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_b0268 twin-arginine translocation pathway signal K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_0295 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_0271 appB; oligopeptide ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_b0042 Putative peptide transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_b0492 putative oligopeptide ABC transporter (permease) K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_2725 gsiC; binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_c0451 dppB; binding-protein dependent transport system inner membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_a0343 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_b0381 inner membrane component of binding-protein-dependent transport system K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_1419 dppB; ABC transporter membrane spanning protein (oligopeptide) K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_2026 appB; oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_1031 appB; oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_1182 gsiC; binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_2848 dppB; ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_a0025 putative ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_a0130 ddpB; binding-protein dependent transport system inner membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_b0266 gsiC; binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_c0347 dppB; ABC transporter permease protein 2 K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_0294 dppC; Dipeptide transport system permease protein dppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_0272 appC; ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_a0342 Putative peptide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_b0041 Dipeptide transport system permease protein dppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_c0348 ddpC; ABC transporter permease protein 1 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_b0491 dppC; binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_2726 appC; ABC transporter, membrane spanning protein (oligopeptide) K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_c0452 appC; binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_b0380 inner membrane component of binding-protein-dependent transport system K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_1420 ddpC; binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_2027 appC; putative oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_1032 appC; ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_1181 appC; ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_2849 appC; peptide/nickel transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_a0024 putative ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_a0129 ddpC; ABC transporter permease protein 1 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_b0267 appC; binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_0273 gsiA; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_a0128 Oligopeptide/dipeptide transporter domain family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_2850 gsiA; ABC superfamily ATP binding cassette transporter, ABC protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0040 gsiA; ABC superfamily ATP binding cassette transporter, ABC protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_c0349 gsiA; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0495 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_c0453 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_a0341 gsiA; oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0379 dppD; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_1421 dppD; ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_2024 gsiA; putative mureinpeptideoligopeptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_1025 gsiA; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_1184 ABC transporter ATP binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_a0023 gsiA; putative ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0265 gsiA; putative ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_0293 appD; oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_2723 gsiA; ABC transporter, nucleotide binding/ATPase protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0494 ykfD; oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D TMO_2712 oxaA; 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TMO_c0594 secD; protein-export membrane protein SECD K12257 secDF; SecD/SecF fusion protein D TMO_2646 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D TMO_1749 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TMO_2612 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D TMO_1546 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D TMO_0353 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TMO_0166 ftsY; Signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor D TMO_3396 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D TMO_3247 signal recognition particle, subunit SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:tmo02030] D TMO_3495 mcp3; methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_0214 mcp4; Pmethyl-accepting chemotaxis receptor/sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_0221 htr5; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_0229 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_1557 Methyl-accepting chemotaxis protein signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1575 mcp2; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1632 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1634 pilJ; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_0581 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2137 mcp4; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_0749 bdlA; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1270 bdlA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2494 mcp4; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2495 dcrA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2911 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2912 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_a0193 dcrA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_b0257 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0509 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0510 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0511 mcp3; methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0715 bdlA; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D TMO_1289 alsB; D-allose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein D TMO_3019 dppA; dipeptide-binding ABC transporter substrate-binding component K12368 dppA; dipeptide transport system substrate-binding protein D TMO_1223 cheA; CheA Signal transduction histidine Kinases (STHK) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TMO_1224 cheW; Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW D TMO_1103 cheY; Response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TMO_1225 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TMO_1104 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D TMO_1012 hypothetical protein K03414 cheZ; chemotaxis protein CheZ D TMO_1226 cheB; chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TMO_1227 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TMO_1245 fliG; flagellar motor switch protein G K02410 fliG; flagellar motor switch protein FliG D TMO_1100 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D TMO_1243 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TMO_1242 pomA; chemotaxis protein K02556 motA; chemotaxis protein MotA D TMO_2876 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D TMO_1106 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D TMO_0875 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D TMO_2875 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:tmo02040] D TMO_1123 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D TMO_1246 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF D TMO_1245 fliG; flagellar motor switch protein G K02410 fliG; flagellar motor switch protein FliG D TMO_1244 flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH D TMO_1229 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TMO_1230 hypothetical protein K02413 fliJ; flagellar protein FliJ D TMO_1099 fliL; flagellar basal body-associated protein K02415 fliL; flagellar protein FliL D TMO_1100 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D TMO_1243 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TMO_1117 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D TMO_1116 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D TMO_1124 yscS; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D TMO_1125 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR D TMO_1240 flagellar biosynthesis pathway, component FlhA K02400 flhA; flagellar biosynthesis protein FlhA D TMO_1126 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D TMO_1096 flgA; flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D TMO_1121 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D TMO_1122 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D TMO_1249 flgD; flagellar basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D TMO_1248 flgE; Flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE D TMO_1098 flgF; flagellar basal-body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D TMO_1097 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D TMO_1095 flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH D TMO_1091 flgI; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI D TMO_1088 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1 D TMO_1087 flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D TMO_1077 flagellin K02406 fliC; flagellin D TMO_1078 flagellin domain protein K02406 fliC; flagellin D TMO_1075 fliD; flagellar hook-associated protein 2 (FliD, filament cap protein) precursor K02407 fliD; flagellar hook-associated protein 2 D TMO_1074 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D TMO_1242 pomA; chemotaxis protein K02556 motA; chemotaxis protein MotA D TMO_2876 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D TMO_1106 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D TMO_0875 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D TMO_2875 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D TMO_c0106 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D TMO_0177 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D TMO_1241 flbD; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D TMO_1746 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:tmo04980] D TMO_0122 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D TMO_c0792 ArgK protein K07588 MMAA; GTPase [EC:3.6.5.-] D TMO_c0831 mutB; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D TMO_c0832 mutA; methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D TMO_0826 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tmo01501] D TMO_3424 Outer membrane protein (porin) K08720 ompU; outer membrane protein OmpU D TMO_3451 ampG; major facilitator superfamily permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D TMO_1510 nagZ; Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D TMO_b0164 ampR; HTH-type transcriptional activator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D TMO_b0165 Beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D TMO_2668 bepR; transcription regulator protein K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D TMO_c0601 putative HlyD-like secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_2667 bepD; multidrug-efflux system secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0126 mdtA; RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0590 secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0600 cation/multidrug efflux pump protein K18138 acrB; multidrug efflux pump D TMO_c0127 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D TMO_c0591 hydrophobic/amphiphilic exporter-1 K18138 acrB; multidrug efflux pump D TMO_2666 bepE; hydrophobe/amphiphile efflux-1 (HAE1) family protein K18138 acrB; multidrug efflux pump D TMO_2665 silC; RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D TMO_a0028 baeS; two component sensor histidine kinase, AdeS K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3] D TMO_a0029 putative transcriptional regulator ycf27 K18144 adeR; two-component system, OmpR family, response regulator AdeR D TMO_1910 bepC; TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein D TMO_1517 bepC; type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D TMO_c0702 mrcA; penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TMO_0008 pbpG; penicillin binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TMO_0764 mrdA; penicillin binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TMO_c0247 penA; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TMO_3399 class D beta-lactamase K17838 oxa; beta-lactamase class D [EC:3.5.2.6] C 01502 Vancomycin resistance [PATH:tmo01502] D TMO_3524 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D TMO_c0238 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TMO_0216 dadB; putative alanine racemase, catabolic K01775 alr; alanine racemase [EC:5.1.1.1] D TMO_1874 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TMO_c0245 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase subfamily K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TMO_c0244 mraY; Glycosyl transferase, family 4 K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TMO_c0241 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tmo01503] D TMO_1315 hemolysin-type calcium-binding repeat family protein K01406 prtC; serralysin [EC:3.4.24.40] D TMO_c0703 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TMO_2651 degP; putative serine protease do-like protein K04771 degP; serine protease Do [EC:3.4.21.107] D TMO_d0063 degP; Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107] D TMO_c0601 putative HlyD-like secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_2667 bepD; multidrug-efflux system secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0126 mdtA; RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0590 secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0600 cation/multidrug efflux pump protein K18138 acrB; multidrug efflux pump D TMO_c0127 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D TMO_c0591 hydrophobic/amphiphilic exporter-1 K18138 acrB; multidrug efflux pump D TMO_2666 bepE; hydrophobe/amphiphile efflux-1 (HAE1) family protein K18138 acrB; multidrug efflux pump D TMO_1910 bepC; TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein D TMO_1517 bepC; type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D TMO_1770 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D TMO_3498 mprF; putative membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tmo01000] C 01001 Protein kinases [BR:tmo01001] D TMO_a0073 ppkA-related protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D TMO_a0074 serine/threonine kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D TMO_a0598 HipA-like protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D TMO_3483 hipA; HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D TMO_1527 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D TMO_3503 phoR; two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D TMO_c0142 Signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D TMO_c0014 cusS; sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D TMO_0451 kdpD; two-component system, OmpR family, sensor histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D TMO_0372 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D TMO_2058 chvG; sensor histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D TMO_a0028 baeS; two component sensor histidine kinase, AdeS K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3] D TMO_2357 cpxA; Sensor protein cpxA K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D TMO_1705 nitrogen regulation protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D TMO_1703 Nitrogen regulation protein, NtrY, Signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D TMO_c0527 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D TMO_a0152 two-component sensor histidine kinase protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D TMO_1223 cheA; CheA Signal transduction histidine Kinases (STHK) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TMO_c0561 sensor histidine kinase (non-motile and phage-resistance protein) K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D TMO_3174 divJ; putative non-motile and phage-resistance protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D TMO_1251 PAS/PAC sensor signal transduction histidine kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D TMO_1127 cell cycle histidine kinase CckA K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D TMO_0023 regB; two-component sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D TMO_b0370 two-component hybrid sensor and regulator K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] D TMO_2739 signal transduction histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS D TMO_b0028 dhkJ; Signal transduction histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:tmo01009] D TMO_0170 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D TMO_3058 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG D TMO_d0065 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:tmo01002] D TMO_c0082 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D TMO_2890 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D TMO_1397 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D TMO_c0281 yfeJ; glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D TMO_1445 guaA; bifunctional GMP synthase/glutamine amidotransferase protein K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D TMO_3144 puuD; putative glutamine amidotransferase K07010 K07010; putative glutamine amidotransferase D TMO_2878 putative gamma-glutamyl-gamma-aminobutyrate hydrolase K07010 K07010; putative glutamine amidotransferase D TMO_1879 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D TMO_0185 gltB; glutamate synthase(NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D TMO_2313 glmS; glucosamine-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TMO_c0187 asnO; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_2500 asnB; asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_c0775 asnO; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_c0861 asnO; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_b0137 putative asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_0996 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_2418 asnO; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_3389 asnO; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_a0047 asnB; Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_a0581 asnH; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D TMO_b0043 acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase K19200 IAL; isopenicillin-N N-acyltransferase like protein D TMO_1156 pfpI; proteinase K05520 yhbO; deglycase [EC:3.5.1.124] D TMO_2584 ThiJ/PfpI domain protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D TMO_0792 ThiJ/PfpI family protein K18199 inhA; cyclohexyl-isocyanide hydratase [EC:4.2.1.103] D TMO_2113 hypothetical protein K16291 erfK; L,D-transpeptidase ErfK/SrfK D TMO_c0618 yyaK; CAAX amino terminal protease family K07052 K07052; CAAX protease family protein D TMO_1210 pepN; membrane alanyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2] D TMO_c0308 yjbG; Oligoendopeptidase F-like protein K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D TMO_1315 hemolysin-type calcium-binding repeat family protein K01406 prtC; serralysin [EC:3.4.24.40] D TMO_3524 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D TMO_2888 peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-] D TMO_2887 protease K07263 pqqL; zinc protease [EC:3.4.24.-] D TMO_1846 pepA; leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D TMO_3182 pepB; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D TMO_1801 glutamine amidotransferase, class II/dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D TMO_2705 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D TMO_2909 map; methionine aminopeptidase, type I, Map putative K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D TMO_2169 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D TMO_1351 ykvY; peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D TMO_c0183 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D TMO_2805 Thermostable carboxypeptidase 1 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D TMO_0911 ftsH; cell division protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TMO_1502 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TMO_0100 htpX; heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D TMO_c0293 HtpX-2 peptidase K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D TMO_2496 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D TMO_1775 zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D TMO_c0902 peptidase M50 K16922 yydH; putative peptide zinc metalloprotease protein D TMO_1054 peptidase M50 K16922 yydH; putative peptide zinc metalloprotease protein D TMO_2651 degP; putative serine protease do-like protein K04771 degP; serine protease Do [EC:3.4.21.107] D TMO_d0063 degP; Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107] D TMO_1676 dacA; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TMO_1983 clpP; Protease subunit of ATP-dependent Clp proteases K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TMO_b0419 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TMO_1981 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D TMO_1763 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D TMO_1595 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TMO_3049 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D TMO_2976 ctpA; carboxyl-terminal processing protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D TMO_1613 quiP; peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D TMO_2125 quiP; peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D TMO_a0582 peptidase S45 penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11] D TMO_3229 sppA; signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-] D TMO_3349 hslV; ATP-dependent protease peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D TMO_3011 ywrD; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_b0384 acyI; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_c0339 gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_c0706 gamma-glutamyltranspeptidase precursor K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D TMO_2829 pmbA; Peptidase U62, modulator of DNA gyrase K03592 pmbA; PmbA protein D TMO_2815 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein D TMO_d0060 hflC; membrane protease subunit HflC K04087 hflC; modulator of FtsH protease HflC D TMO_d0059 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:tmo01003] D TMO_1084 bcsA; putative cellulose synthase catalytic subunit K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D TMO_0237 Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D TMO_a0456 glycosyl transferase family protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D TMO_c0702 mrcA; penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TMO_0008 pbpG; penicillin binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TMO_0722 glycosyltransferase K21001 pslH; polysaccharide biosynthesis protein PslH D TMO_1735 glycosyl transferase WecB/TagA/CpsF K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D TMO_1463 glycosyl transferase family protein K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173] D TMO_2694 UDP-glucose:sterol glucosyltransferase K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173] D TMO_a0220 otsA; alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] C 01005 Lipopolysaccharide biosynthesis proteins [BR:tmo01005] D TMO_1770 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D TMO_1768 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D TMO_c0234 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D TMO_1772 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D TMO_a0030 hypothetical protein K12978 lpxF; lipid A 4'-phosphatase [EC:3.1.3.-] D TMO_1769 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D TMO_2834 lpxK; Tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D TMO_2835 Lauroyl/myristoyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D TMO_2910 hypothetical protein K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-] D TMO_2833 waaA; three-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D TMO_1747 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D TMO_3191 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D TMO_0181 putative sugar phosphate isomerase involved in capsule formation K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D TMO_0993 glycosyl transferase family protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] D TMO_0681 gmhA; Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D TMO_0482 gmhB; Histidinol phosphatase-related phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D TMO_0680 hldE; rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D TMO_0683 hldD; nucleoside-diphosphate-sugar epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tmo01011] D TMO_1000 murA; UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TMO_c0239 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TMO_c0240 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TMO_c0243 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TMO_c0246 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TMO_c0238 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TMO_0216 dadB; putative alanine racemase, catabolic K01775 alr; alanine racemase [EC:5.1.1.1] D TMO_1874 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TMO_c0244 mraY; Glycosyl transferase, family 4 K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TMO_c0241 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TMO_2029 uppP; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D TMO_b0490 yodM; phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D TMO_3491 mviN; virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D TMO_c0702 mrcA; penicillin binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TMO_0008 pbpG; penicillin binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TMO_0764 mrdA; penicillin binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TMO_c0247 penA; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TMO_1676 dacA; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TMO_0237 Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D TMO_a0456 glycosyl transferase family protein K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D TMO_2113 hypothetical protein K16291 erfK; L,D-transpeptidase ErfK/SrfK D TMO_3524 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D TMO_1583 slt; soluble lytic murein transglycosylase precursor K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TMO_2674 slt; Soluble lytic murein transglycosylase and related regulatory protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TMO_3385 mltA; membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D TMO_1674 mltB; Lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D TMO_1862 periplasmic solute-binding protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D TMO_1675 rlpA; Lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TMO_c0703 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tmo01004] D TMO_1866 fabD; S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D TMO_1810 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D TMO_0490 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP synthase II) (KAS II) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D TMO_1863 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D TMO_1543 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D TMO_c0537 putative oxidoreductase protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_1865 nodG; dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_2839 fabG; short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_c0839 3-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_3257 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_0600 fabG; short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_0978 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_a0236 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D TMO_1771 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D TMO_2256 enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D TMO_0984 short-chain dehydrogenase/reductase SDR K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D TMO_3198 tesA; SGNH hydrolase-type arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D TMO_0232 GDSL-like lipase/acylhydrolase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D TMO_c0803 fatty-acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1] D TMO_c0486 fatty acid desaturase K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45] D TMO_0095 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_a0524 acetyl-CoA synthetase/AMP-(fatty) acid ligase FadDx K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0622 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_0846 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_1574 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D TMO_1253 acetoacetyl-CoA synthetase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D TMO_b0292 hypothetical protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D TMO_3263 CoA-binding protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D TMO_c0786 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0766 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_3063 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0167 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0366 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_2034 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_1434 lcfA; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0226 Acyl-CoA synthetase/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0689 lcfA; 4-coumarate-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0512 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0234 fadD; AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0484 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0368 lcfA; long-chain-fatty-acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D TMO_1286 AMP-binding domain protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D TMO_2421 menE; long-chain-fatty-acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D TMO_3504 lcfB; acyl-CoA synthase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D TMO_a0464 long-chain-fatty-acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D TMO_a0542 yngI; AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D TMO_a0570 AMP-binding domain protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D TMO_b0436 menE; feruloyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D TMO_1811 plsX; putative glycerol-3-phosphate acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D TMO_2548 plsY; Glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D TMO_0134 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:tmo01008] D TMO_b0320 mbtH; MbtH-like protein K05375 mbtH; MbtH protein D TMO_c0612 mbtH; MbtH domain-containing protein K05375 mbtH; MbtH protein D TMO_0595 dhbF; syringomycin synthetase K02364 entF; L-serine---[L-seryl-carrier protein] ligase [EC:6.3.2.14 6.2.1.72] D TMO_c0696 radical SAM domain protein K21224 kedN5; radical SAM C-methyltransferase D TMO_0890 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] D TMO_b0255 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13] C 01006 Prenyltransferases [BR:tmo01006] D TMO_0965 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D TMO_c0801 ispB; Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TMO_1778 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TMO_1553 squalene K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D TMO_d0066 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D TMO_2823 4-hydroxybenzoate polyprenyltransferase-related prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D TMO_2812 ctaB; putative protoheme IX farnesyltransferase (heme o synthase) K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:tmo01007] D TMO_2743 lysS; lysyl-tRNA synthetase, class I K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TMO_1765 Glutamyl-tRNA synthetase, class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_2298 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_3168 gltX; glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D TMO_c0679 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TMO_3512 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TMO_2297 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TMO_1508 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TMO_1679 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TMO_2891 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TMO_1908 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TMO_3422 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TMO_1833 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TMO_0379 hisS; Histidyl-tRNA synthetase, class IIa K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TMO_c0796 glyQ; Glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D TMO_c0794 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D TMO_1539 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TMO_0264 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TMO_0780 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TMO_0528 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TMO_1130 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TMO_0198 pheS; phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TMO_0199 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TMO_b0312 aatB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_b0349 aspC; aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_c0124 aatA; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D TMO_1944 aatC; aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D TMO_1991 ybdL; putative cysteine-S-conjugate beta-lyase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D TMO_0140 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_b0179 aspartate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D TMO_2051 hemA; 5-aminolevulinate synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D TMO_0427 8-amino-7-oxononanoate synthase BioF K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D TMO_a0345 beta-alanine-pyruvate transaminase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D TMO_0945 omega-amino acid--pyruvate aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D TMO_0027 argD; acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D TMO_3321 argD; acetylornithine and succinylornithine K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D TMO_0425 bioA; adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D TMO_c0442 aminotransferase K03851 tpa; taurine-pyruvate aminotransferase [EC:2.6.1.77] D TMO_1799 dgdA; aminotransferase class-III K00596 E4.1.1.64; 2,2-dialkylglycine decarboxylase (pyruvate) [EC:4.1.1.64] D TMO_c0639 ilvE; aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_c0139 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3171 ilvE; branched-chain amino acid aminotransferase-like protein K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_3195 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D TMO_0918 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 [BR:tmo00199] D TMO_b0157 putative fatty acid beta hydroxylase K15629 CYP152A; fatty-acid peroxygenase [EC:1.11.2.4] C 00194 Photosynthesis proteins [BR:tmo00194] D TMO_1650 alternate F1F0 ATPase, F1 subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D TMO_2984 atpC; F-type H+-transporting ATPase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D TMO_1649 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D TMO_2985 atpD; F1-ATP Synthase Beta Chain K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D TMO_1657 atpG; H+transporting two-sector ATPase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D TMO_2986 atpG; F-type H+-transporting ATPase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D TMO_1656 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D TMO_2987 atpA; primosome assembly protein PriA K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D TMO_2988 atpH; F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D TMO_1655 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D TMO_2781 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D TMO_2782 atpF; ATP synthase B chain precursor K02109 ATPF0B; F-type H+-transporting ATPase subunit b D TMO_1654 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D TMO_1653 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D TMO_2779 atpB; F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D TMO_1651 F0F1-ATPase subunit K02116 atpI; ATP synthase protein I D TMO_2778 atpI; ATP synthase protein I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tmo03000] D TMO_3281 pchR; helix-turn-helix domain-containing protein K05372 ybtA; AraC family transcriptional regulator D TMO_0389 pchR; regulatory protein PchR K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors D TMO_a0199 pchR; regulatory protein Pchr K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors D TMO_0219 ydeE; transcriptional regulatory protein K13653 K13653; AraC family transcriptional regulator D TMO_c0212 ybfI; transcriptional activator K07506 K07506; AraC family transcriptional regulator D TMO_c0325 ybfI; transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D TMO_2180 rhaS; transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D TMO_b0537 putative transcriptional regulator protein, AraC family K07506 K07506; AraC family transcriptional regulator D TMO_a0124 msmR; transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator D TMO_3184 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D TMO_0246 gcvA; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_0394 gcvA; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_0456 gcvA; transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_0231 gcvA; transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_2733 gcvA; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_b0353 trpI; transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_1033 gcvA; transcriptional regulatory protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_2750 gcvA; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_b0062 gcvA; LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_b0314 gcvA; transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_b0487 gcvA; transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D TMO_2436 pcaQ; LysR family transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D TMO_0262 oxyR; hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D TMO_a0134 hcaR; transcriptional regulator, LysR family K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator D TMO_b0164 ampR; HTH-type transcriptional activator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D TMO_1560 cmpR; LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D TMO_3225 cbbR; putative transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D TMO_0387 glpR; glycerol-3-phosphate transcriptional regulator protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D TMO_b0504 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D TMO_d0027 glpR; transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D TMO_d0035 glpR; putative transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D TMO_1321 glpR; transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D TMO_1160 ydjF; transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D TMO_0419 transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D TMO_2103 phosphonate operon transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D TMO_2954 hutC; GntR family transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D TMO_b0562 hutC; transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D TMO_2349 hutC; transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D TMO_c0580 yvoA; transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D TMO_b0369 yurK; GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D TMO_b0553 yvoA; GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D TMO_a0398 yvoA; transcriptional regulator K03710 K03710; GntR family transcriptional regulator D TMO_b0171 mngR; Mannosyl-D-glycerate transport/metabolism system repressor mngR K03710 K03710; GntR family transcriptional regulator D TMO_0462 pdhR; GntR domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D TMO_c0465 GntR domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D TMO_0281 lutR; transcriptional regulator-like protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D TMO_c0394 ydeL; transcriptional regulator, GntR family with aminotransferase domain protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D TMO_c0443 ydeL; transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D TMO_c0444 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D TMO_3323 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D TMO_3356 aminotransferase protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D TMO_2129 ygaE; transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D TMO_b0422 bphR; transcriptional regulator protein K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator D TMO_c0381 rutR; transcriptional regulator, TetR family protein K09017 rutR; TetR/AcrR family transcriptional regulator D TMO_0859 rutR; TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D TMO_3039 putative lactone-dependent transcriptional regulator (tetr-family), mmfr K09017 rutR; TetR/AcrR family transcriptional regulator D TMO_1111 dhaR; TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TMO_1493 dhaR; TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TMO_b0148 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TMO_0610 dhaR; transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TMO_1142 yezE; TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TMO_a0271 lmrA; transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TMO_1040 ycfQ; transcriptional regulator, TetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TMO_a0395 acrR; TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D TMO_2898 ydeS; TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D TMO_2668 bepR; transcription regulator protein K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon D TMO_c0222 ybiH; TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D TMO_b0342 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_2956 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_0607 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_1329 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_2039 AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_2445 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_a0049 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_3269 lysM; transcription regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_1486 azlB; alanine catabolic operon transcriptional regulator protein K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon D TMO_c0697 rhiR; LuxR family transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1 D TMO_c0681 slyA; MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D TMO_c0889 slyA; regulatory protein, MarR K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D TMO_2944 slyA; MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D TMO_0695 slyA; transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D TMO_a0504 badR; putative MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D TMO_c0576 mexR; MarR family transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility D TMO_1568 ohrR; transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D TMO_0267 ohrR; transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D TMO_0112 mhqR; transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D TMO_2571 yybA; transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D TMO_c0076 merR; MerR family transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D TMO_1756 hmrR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D TMO_2241 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D TMO_3517 soxR; Redox-sensitive transcriptional activator soxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D TMO_3528 ferric uptake regulator family protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D TMO_1386 ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D TMO_3548 Fe2+/Zn2+ uptake regulation protein K09826 irr; Fur family transcriptional regulator, iron response regulator D TMO_0349 iclR; transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D TMO_b0260 pcaR; transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D TMO_1426 yagI; Transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D TMO_0233 ntcA; cAMP-binding protein - catabolite protein activator and regulatory subunit of cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_0037 transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_2995 transcriptional regulator, Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_b0210 nte1; transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D TMO_0968 transcriptional regulator, Crp K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D TMO_b0273 etrA; transcriptional regulator, Crp/Fnr family protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D TMO_b0449 transcriptional activator FtrB K13642 ftrB; CRP/FNR family transcriptional regulator, transcriptional activator FtrB D TMO_c0760 nsrR; HTH-type transcriptional regulator nsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D TMO_0204 regulatory protein ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D TMO_c0336 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D TMO_c0015 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D TMO_a0482 ArsR family transcriptional regulator/protein tyrosine phosphatase K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] D TMO_2412 XRE family transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D TMO_0929 transcriptional regulator, XRE family protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D TMO_c0020 ywzG; transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator D TMO_1964 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D TMO_c0366 ygiT; transcriptional regulator, XRE family K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D TMO_3484 hypothetical protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D TMO_c0664 HTH-type transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D TMO_0788 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D TMO_1431 Fis family GAF modulated sigma54 specific transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D TMO_2933 acoR; Fis family GAF modulated sigma54 specific transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D TMO_c0849 acoR; transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D TMO_0320 hyfR; putative PAS/PAC sensor protein K15836 fhlA; formate hydrogenlyase transcriptional activator D TMO_2982 mopB; putative molybdenum-binding transcriptional regulator ModE family protein K02019 modE; molybdate transport system regulatory protein D TMO_c0579 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator D TMO_b0169 DNA-binding protein K07726 K07726; putative transcriptional regulator D TMO_1498 yozG; XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator D TMO_0608 putA; delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D TMO_0339 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D TMO_3419 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_2225 yubM; ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_b0587 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_c0023 yubM; ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_3054 ydeB; Transcription factor CarD-like protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D TMO_3472 hrcA; Transcriptional regulator of heat shock gene K03705 hrcA; heat-inducible transcriptional repressor D TMO_c0587 Transcriptional activator, TenA family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D TMO_0834 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D TMO_b0435 phenylacetic acid degradation operon negative regulatory protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D TMO_1623 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D TMO_1624 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase D TMO_c0096 phage-related protein K07733 alpA; prophage regulatory protein D TMO_c0395 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D TMO_a0109 paiB; transcriptional repressor of sporulation and degradative enzyme production K07734 paiB; transcriptional regulator D TMO_3013 paiB; Protease synthase and sporulation protein PAI K07734 paiB; transcriptional regulator D TMO_b0046 paiB; Protease synthase and sporulation protein PAI K07734 paiB; transcriptional regulator D TMO_b0263 paiB; putative regulatory protein K07734 paiB; transcriptional regulator D TMO_2799 transcriptional regulator K07735 algH; putative transcriptional regulator D TMO_1093 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D TMO_1824 Transcriptional repressor nrdR K07738 nrdR; transcriptional repressor NrdR D TMO_c0759 sigma-54 interacting transcription regulator protein K14414 rtcR; transcriptional regulatory protein RtcR D TMO_c0250 mraZ; cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tmo03021] D TMO_2608 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TMO_2639 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TMO_2638 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TMO_1590 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TMO_c0106 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor D TMO_c0134 sigW; RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D TMO_1686 rpoE; RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D TMO_c0148 rpoH; RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor D TMO_3053 rpoH; RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor D TMO_0654 rpoH; RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor D TMO_0934 rpoH; RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor D TMO_0177 RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor D TMO_3540 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D TMO_1819 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D TMO_2645 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D TMO_2783 icfG; protein serine/threonine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D TMO_c0121 Serine phosphatase RsbU, regulator of sigma subunit K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D TMO_1528 btrV; anti-anti-sigma regulatory factor K04749 rsbV; anti-sigma B factor antagonist D TMO_1527 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D TMO_1093 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D TMO_c0111 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D TMO_3408 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tmo03019] D TMO_c0704 Ribonuclease E and G K08300 rne; ribonuclease E [EC:3.1.26.12] D TMO_1007 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D TMO_1596 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TMO_1962 rnjA; beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D TMO_2553 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D TMO_0748 rhlE; DEAD/DEAH box helicase domain-containing protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D TMO_2109 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TMO_1746 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TMO_3546 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TMO_3408 transcription termination factor Rho K03628 rho; transcription termination factor Rho D TMO_3474 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TMO_1696 groL; GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TMO_1699 RNA-binding protein Hfq K03666 hfq; host factor-I protein D TMO_3317 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D TMO_c0160 polynucleotide adenylyltransferase region K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D TMO_2978 rppH; nudix family hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D TMO_1120 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D TMO_0173 nucleotide-binding protein K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:tmo03011] D TMO_3221 rpsA; Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D TMO_1782 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D TMO_2626 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D TMO_2287 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TMO_2615 rpsE; small subunit ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D TMO_1868 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D TMO_2636 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TMO_2618 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D TMO_1789 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D TMO_2633 rpsJ; Ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D TMO_2609 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D TMO_2637 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D TMO_2610 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D TMO_2619 rpsN; small subunit ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D TMO_3545 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D TMO_3248 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D TMO_2623 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D TMO_1869 rpsR; small subunit ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D TMO_2628 rpsS; small subunit ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D TMO_3564 rpsT; Ribosomal protein S20p K02968 RP-S20; small subunit ribosomal protein S20 D TMO_0833 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D TMO_2643 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D TMO_2629 rplB; Ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D TMO_2632 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D TMO_2631 rplD; 50S ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D TMO_2620 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D TMO_2617 rplF; large subunit ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D TMO_1871 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D TMO_2642 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D TMO_2644 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D TMO_2641 rplL; large subunit ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D TMO_1790 rplM; Ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D TMO_2622 rplN; large subunit ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D TMO_2613 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D TMO_2625 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D TMO_2607 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D TMO_2616 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D TMO_3251 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D TMO_0197 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D TMO_2965 rplU; 50S ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D TMO_2627 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D TMO_2630 rplW; Ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D TMO_2621 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D TMO_2966 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D TMO_0318 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D TMO_2624 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D TMO_2614 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D TMO_0874 rpmE; large subunit ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D TMO_1812 rpmF; Ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D TMO_2558 rpmG; Ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D TMO_2715 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D TMO_0196 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D TMO_c0481 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D TMO_0308 rplY; 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D TMO_r07 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_r30 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_rc04 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_rd04 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_r04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_rd01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_rc07 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_r33 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_r06 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_r31 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_rc05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_rd03 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:tmo03009] D TMO_1596 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TMO_1597 era; GTP-binding protein Era K03595 era; GTPase D TMO_2967 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-] D TMO_1093 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D TMO_3540 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA D TMO_1819 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D TMO_2645 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D TMO_1852 rsmA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D TMO_0101 Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D TMO_1439 tRNA and rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D TMO_2880 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D TMO_2822 rsmE; ribosomal RNA small subunit methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TMO_3417 rsmG; S-adenosylmethionine-dependent methyltransferase involved in cell division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TMO_c0249 mraW; S-adenosyl-methyltransferase mraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D TMO_3467 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D TMO_0967 yqxC; putative rRNA methylase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D TMO_2648 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D TMO_1437 rlmE; 23S rRNA methylase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D TMO_2972 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D TMO_1108 rlmI; methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D TMO_0011 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D TMO_3115 rlmN; cfr family radical SAM enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D TMO_0938 (Uracil-5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D TMO_3035 ribosomal large subunit pseudouridine synthase D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D TMO_2879 pseudouridine synthase, Rsu K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D TMO_2603 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D TMO_0935 rluD; Pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D TMO_3526 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D TMO_1322 ypeA; acetyltransferase, GNAT family K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D TMO_0753 lysX; S6 modification enzyme RimK K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] D TMO_3249 rimM; 50S ribosomal protein L19 K02860 rimM; 16S rRNA processing protein RimM D TMO_c0169 YcaO-like family K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D TMO_c0184 prmA; ribosomal protein L11 methylase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D TMO_c0704 Ribonuclease E and G K08300 rne; ribonuclease E [EC:3.1.26.12] D TMO_1007 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D TMO_d0007 putative endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D TMO_1884 engA; GTP-binding protein EngA K03977 engA; GTPase D TMO_1698 hflX; GTP-binding protein HFLX K03665 hflX; GTPase D TMO_1035 ywlC; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TMO_2341 ywlC; putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TMO_1591 Guanosine polyphosphate pyrophosphohydrolase/synthetase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D TMO_3543 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D TMO_3539 rimP; Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP D TMO_2971 ybeB; Iojap-related protein K09710 ybeB; ribosome-associated protein D TMO_3533 putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor D TMO_0176 sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor D TMO_0306 engD; putative GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:tmo03016] D TMO_c0758 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D TMO_1765 Glutamyl-tRNA synthetase, class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_2298 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_0264 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TMO_2891 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TMO_3422 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TMO_1679 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TMO_1508 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TMO_1833 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TMO_1130 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TMO_0780 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TMO_0528 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TMO_1539 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TMO_2297 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TMO_1908 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TMO_0379 hisS; Histidyl-tRNA synthetase, class IIa K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TMO_0198 pheS; phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TMO_0199 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TMO_c0679 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TMO_3512 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TMO_2504 Alanyl-tRNA editing protein alaX-M K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D TMO_3033 histidine triad protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D TMO_3365 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D TMO_3538 trmB; tRNA (guanine-N7-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D TMO_3544 truB; Pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D TMO_c0665 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TMO_c0666 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TMO_1035 ywlC; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TMO_2341 ywlC; putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TMO_d0066 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D TMO_3415 mnmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D TMO_3416 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TMO_2337 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D TMO_2714 rnpA; Bacterial ribonuclease P protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D TMO_3471 RNase PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D TMO_0182 3'-5' exonuclease K03684 rnd; ribonuclease D [EC:3.1.13.5] D TMO_1834 Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D TMO_1887 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D TMO_0820 putative ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA D TMO_2743 lysS; lysyl-tRNA synthetase, class I K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TMO_c0796 glyQ; Glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D TMO_c0794 glyS; glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D TMO_3168 gltX; glutamyl-tRNA synthetase, class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D TMO_0516 ybaK; ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D TMO_3132 Ala-tRNA(Pro) hydrolase K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D TMO_2877 cytidine/deoxycytidylate deaminase, zinc-binding region K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D TMO_2040 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D TMO_1706 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D TMO_3531 miaB; RNA modification protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D TMO_0167 MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D TMO_c0809 cmoA; methyltransferase type 12 K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D TMO_0615 cmoA; methyltransferase domain protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D TMO_a0317 cmoB; putative SAM-dependent methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D TMO_2293 pncA; isochorismatase hydrolase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D TMO_1554 glucose-inhibited division protein A K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D TMO_3250 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D TMO_c0155 yibK; putative aminotransferase/methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D TMO_1109 ysgA; rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family D TMO_3035 ribosomal large subunit pseudouridine synthase D K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D TMO_c0586 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D TMO_2802 tusA; SirA-like protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D TMO_c0589 Iron-sulfur assembly protein K13628 iscA; iron-sulfur cluster assembly protein D TMO_0992 putative aminomethyltransferase related to GcvT K06980 ygfZ; tRNA-modifying protein YgfZ D TMO_1572 queA; Queuosine biosynthesis protein K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D TMO_d0021 queC; exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D TMO_d0020 queD; putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D TMO_d0019 ygcF; 7-carboxy-7-deazaguanine synthase-like protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D TMO_3097 queF; GTP cyclohydrolase family protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D TMO_0189 yjeS; putative iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D TMO_1573 Queuine/archaeosine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D TMO_0910 tilS; putative PP-loop superfamily ATPase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D TMO_3525 yeaZ; peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D TMO_0086 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D TMO_3246 ATP-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D TMO_2553 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1] D TMO_3546 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TMO_c0712 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] C 03012 Translation factors [BR:tmo03012] D TMO_3542 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D TMO_0195 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D TMO_1843 yheS; ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D TMO_1781 elongation factor Ts K02357 tsf; elongation factor Ts D TMO_2634 tuf1; Translation elongation factor Tu K02358 tuf; elongation factor Tu D TMO_2647 tuf1; Translation elongation factor Tu K02358 tuf; elongation factor Tu D TMO_2635 fusA; elongation factor Tu K02355 fusA; elongation factor G D TMO_1925 elongation factor G K02355 fusA; elongation factor G D TMO_0380 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1 D TMO_1779 ribosome recycling factor K02838 frr; ribosome recycling factor D TMO_0381 hemK; HemK family modification methylase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D TMO_0307 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D TMO_1005 infA; translation initiation factor 1 K02518 infA; translation initiation factor IF-1 D TMO_0879 elongation factor P K02356 efp; elongation factor P D TMO_c0701 prfB; peptide chain release factor RF-2 K02836 prfB; peptide chain release factor 2 D TMO_0561 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D TMO_2493 class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:tmo03110] D TMO_0588 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D TMO_0384 clpB; ATP-dependent Clp protease ATP-binding subunit K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D TMO_1982 clpX; ATP-dependent protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D TMO_3348 hslU; ATP-dependent protease ATP-binding subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D TMO_3058 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG D TMO_3474 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TMO_3284 yegD; chaperone protein yegD K04046 yegD; hypothetical chaperone protein D TMO_1696 groL; GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TMO_3475 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D TMO_c0255 djlA; DnaJ-like protein DjlA K05801 djlA; DnaJ like chaperone protein D TMO_0030 hslO; molecular chaperone Hsp33 K04083 hslO; molecular chaperone Hsp33 D TMO_3473 grpE; GrpE protein K03687 GRPE; molecular chaperone GrpE D TMO_0872 hspB; small heat shock protein K04080 ibpA; molecular chaperone IbpA D TMO_3056 hslR; heat shock protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D TMO_1697 groS; chaperonin K04078 groES; chaperonin GroES D TMO_2651 degP; putative serine protease do-like protein K04771 degP; serine protease Do [EC:3.4.21.107] D TMO_d0063 degP; Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107] D TMO_0911 ftsH; cell division protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TMO_1502 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TMO_1653 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D TMO_2779 atpB; F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a D TMO_3396 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D TMO_d0012 Putative lipoprotein K09796 pccA; periplasmic copper chaperone A D TMO_1751 ppiD; peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D TMO_0354 cbf2; PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D TMO_b0455 nifM; PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D TMO_1850 surA; Parvulin-like peptidyl-prolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D TMO_3241 trxA; thioredoxin 1 K03671 TXN; thioredoxin D TMO_3133 trxA; thioredoxin K05838 ybbN; putative thioredoxin D TMO_0359 Glutaredoxin-related protein K03676 grxC; glutaredoxin 3 D TMO_2263 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D TMO_3083 helX; cytochrome c biogenesis protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:tmo04131] D TMO_1842 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TMO_c0934 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D TMO_0884 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TMO_1896 ttuE; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D TMO_3058 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:tmo04121] C 03051 Proteasome [BR:tmo03051] D TMO_3058 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:tmo03032] D TMO_2795 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TMO_1980 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D TMO_1809 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D TMO_3230 ihfB; Bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta D TMO_0001 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D TMO_1873 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TMO_c0107 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D TMO_1566 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D TMO_c0088 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TMO_1783 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TMO_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TMO_1845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D TMO_3420 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TMO_1678 holB; ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D TMO_3400 dnaQ; DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_0814 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_b0306 polC; polymerase epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_2686 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TMO_2746 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D TMO_3211 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D TMO_c0230 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TMO_1570 gyrA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TMO_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TMO_1604 parC; Gram negative topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D TMO_1996 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D TMO_a0318 topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D TMO_2552 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D TMO_c0087 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tmo03036] D TMO_c0048 AAA ATPase, central region K22399 TRIP13; pachytene checkpoint protein 2 D TMO_1596 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TMO_2220 putative methylase/helicase K26273 SBNO; protein strawberry notch D TMO_1980 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D TMO_1809 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D TMO_3230 ihfB; Bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta D TMO_0001 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein D TMO_2691 Ferritin, Dps family protein K04047 dps; starvation-inducible DNA-binding protein D TMO_2179 Dps family DNA-binding stress response protein K04047 dps; starvation-inducible DNA-binding protein D TMO_1699 RNA-binding protein Hfq K03666 hfq; host factor-I protein D TMO_b0342 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_2956 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_0607 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_1329 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_2039 AsnC-family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_2445 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_a0049 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_3269 lysM; transcription regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D TMO_2757 chromosome segregation ATPase K03529 smc; chromosome segregation protein D TMO_1511 scpA; condensin subunit ScpA K05896 scpA; segregation and condensation protein A D TMO_1512 scpB; transcription regulator K06024 scpB; segregation and condensation protein B D TMO_c0236 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D TMO_0131 ftsE; putative ATPase involved in cell division K09812 ftsE; cell division transport system ATP-binding protein D TMO_c0247 penA; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TMO_0403 ftsK; cell division FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D TMO_3141 ftsK; DNA segregation ATPase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D TMO_c0248 periplasmic protein K03586 ftsL; cell division protein FtsL D TMO_c0237 ftsQ; Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D TMO_c0242 ftsW; putative cell division protein ftsW K03588 ftsW; cell division protein FtsW D TMO_0132 cell division protein K09811 ftsX; cell division transport system permease protein D TMO_c0235 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TMO_0893 hypothetical protein K09888 zapA; cell division protein ZapA D TMO_3010 AFG1 family ATPase K06916 zapE; cell division protein ZapE D TMO_c0703 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TMO_c0601 putative HlyD-like secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_2667 bepD; multidrug-efflux system secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0126 mdtA; RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0590 secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_0761 mreB; rod shape-determining protein MreB-related protein K03569 mreB; rod shape-determining protein MreB and related proteins D TMO_0762 mreC; Rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D TMO_0763 Cell shape-determining protein K03571 mreD; rod shape-determining protein MreD D TMO_0765 mrdB; Bacterial cell division membrane protein K05837 rodA; rod shape determining protein RodA D TMO_0574 chromosome partitioning protein K03496 parA; chromosome partitioning protein D TMO_3418 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D TMO_2203 putative partition protein K03496 parA; chromosome partitioning protein D TMO_2339 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D TMO_a0142 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D TMO_a0374 parA; partition protein ParA K03496 parA; chromosome partitioning protein D TMO_b0586 sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein D TMO_3419 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_2225 yubM; ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_b0587 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_c0023 yubM; ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_1604 parC; Gram negative topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D TMO_1996 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D TMO_3416 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TMO_3417 rsmG; S-adenosylmethionine-dependent methyltransferase involved in cell division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TMO_1554 glucose-inhibited division protein A K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D TMO_2992 xerC; Tyrosine recombinase xerC K03733 xerC; integrase/recombinase XerC D TMO_a0362 xerC; phage integrase family protein K03733 xerC; integrase/recombinase XerC D TMO_0348 xerD; integrase/recombinase XerD K04763 xerD; integrase/recombinase XerD D TMO_d0058 mrp protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D TMO_2711 engB; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:tmo03400] D TMO_3411 methylated DNA:protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TMO_0789 cry2; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D TMO_2657 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D TMO_2749 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TMO_3448 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TMO_0356 mutT; mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TMO_0035 adp-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D TMO_3557 deoxyuridine 5'triphosphate nucleotidohydrolase protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TMO_3184 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D TMO_2663 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D TMO_1894 alkB; alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D TMO_1587 putative uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TMO_a0602 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TMO_2673 DNA polymerase bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TMO_3212 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D TMO_0991 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D TMO_3561 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D TMO_1505 xthA; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TMO_3346 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TMO_1941 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TMO_c0230 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TMO_3211 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D TMO_1556 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D TMO_c0125 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D TMO_c0130 uvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C D TMO_c0185 uvrD; UvrD/REP helicase domain protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TMO_2639 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TMO_2638 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TMO_2608 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TMO_1590 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TMO_1627 transcription-repair coupling factor superfamily II helicase K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TMO_3501 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D TMO_2885 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D TMO_2873 xseA; exonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D TMO_0964 xseB; Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D TMO_1783 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TMO_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TMO_1845 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D TMO_3420 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TMO_1678 holB; ATPase involved in DNA replication K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D TMO_3400 dnaQ; DNA polymerase III, epsilon subunit and related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_0814 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_b0306 polC; polymerase epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TMO_2686 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TMO_1566 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D TMO_c0088 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TMO_1129 recA; RecA protein K03553 recA; recombination protein RecA D TMO_0899 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA D TMO_0900 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TMO_0898 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TMO_2989 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D TMO_c0441 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 D TMO_c0440 sbcD; nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D TMO_1877 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D TMO_0003 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF D TMO_1625 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TMO_1603 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D TMO_2693 recR; Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR D TMO_c0231 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TMO_3242 addA; UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D TMO_3243 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D TMO_c0384 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D TMO_c0517 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D TMO_a0312 Ku domain-containing protein K10979 ku; DNA end-binding protein Ku D TMO_a0311 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D TMO_1570 gyrA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TMO_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TMO_a0318 topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D TMO_2552 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D TMO_1980 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D TMO_1809 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D TMO_3230 ihfB; Bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta D TMO_2109 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TMO_2562 ImpB/MucB/SamB family K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D TMO_1763 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D TMO_2213 hypothetical protein K14160 imuA; protein ImuA D TMO_1926 hypothetical protein K14160 imuA; protein ImuA D TMO_2212 hypothetical protein K14161 imuB; protein ImuB D TMO_1927 nucleotidyltransferase/DNA polymerase involved in DNA repair K14161 imuB; protein ImuB D TMO_2211 DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D TMO_1928 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D TMO_2338 hypothetical protein K03565 recX; regulatory protein D TMO_2744 yoaA; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D TMO_2063 ATP-dependent RNA helicase, DEAD K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D TMO_2411 NrdA protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_2410 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_c0471 nrdZ; putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_c0741 nrdJ; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TMO_2409 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:tmo03029] D TMO_3542 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D TMO_0195 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D TMO_1781 elongation factor Ts K02357 tsf; elongation factor Ts D TMO_2634 tuf1; Translation elongation factor Tu K02358 tuf; elongation factor Tu D TMO_2647 tuf1; Translation elongation factor Tu K02358 tuf; elongation factor Tu D TMO_2635 fusA; elongation factor Tu K02355 fusA; elongation factor G D TMO_1925 elongation factor G K02355 fusA; elongation factor G D TMO_1814 uqcc; ubiquinol-cytochrome C chaperone K17662 CBP3; cytochrome b pre-mRNA-processing protein 3 D TMO_3057 Helicase-like protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6] D TMO_1597 era; GTP-binding protein Era K03595 era; GTPase D TMO_c0679 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TMO_3422 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TMO_1833 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TMO_1508 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TMO_1412 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_0902 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_1276 gatA; Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_2838 Putative amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_1364 glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_a0414 putative amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_d0009 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TMO_d0010 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TMO_d0008 gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D TMO_1566 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D TMO_c0088 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TMO_1774 yaeT; outer membrane protein K07277 SAM50; outer membrane protein insertion porin family D TMO_3474 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TMO_3473 grpE; GrpE protein K03687 GRPE; molecular chaperone GrpE D TMO_1696 groL; GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TMO_1697 groS; chaperonin K04078 groES; chaperonin GroES D TMO_3475 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D TMO_c0665 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TMO_c0666 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TMO_2263 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin D TMO_0357 S-adenosyl-L-methionine-dependent methyltransferase K18162 NDUFAF5; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 [EC:2.1.1.-] D TMO_0313 hypothetical protein K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7 D TMO_d0058 mrp protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D TMO_2907 FAD dependent oxidoreductase K18166 FOXRED1; FAD-dependent oxidoreductase domain-containing protein 1 D TMO_2812 ctaB; putative protoheme IX farnesyltransferase (heme o synthase) K02257 COX10; heme o synthase [EC:2.5.1.141] D TMO_2810 ctaG; cytochrome-c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D TMO_2806 ctaA; cytochrome C oxidase assembly protein, AA3 subunit-controlling protein K02259 COX15; heme a synthase [EC:1.17.99.9] D TMO_2712 oxaA; 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TMO_c0621 putative SURF1 family protein K14998 SURF1; surfeit locus 1 family protein D TMO_2807 SURF1 family protein K14998 SURF1; surfeit locus 1 family protein D TMO_3148 sco1; Classical-complement-pathway C3/C5 convertase K07152 SCO1; protein SCO1 D TMO_1477 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1 D TMO_3058 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tmo02000] D TMO_3278 ABC transporter related protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D TMO_3277 ygaD; ABC transporter ATP-binding/permease K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D TMO_2831 msbA; ABC-type multidrug transport system, ATPase and permease components K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D TMO_2653 atm1; Iron-sulfur clusters transporter K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D TMO_b0036 ABC transporter related protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump D TMO_a0118 ywjA; ABC transporter, nucleotide binding/ATPase protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D TMO_1065 paxB; putative exotoxin translocation ATP-binding protein PaxB K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D TMO_0961 aprD; ABC transporter, ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D TMO_a0190 cydC; transport ATP-binding protein CYDC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D TMO_a0191 cydD; ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D TMO_b0483 ABC transporter related protein K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial D TMO_2360 macB; ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D TMO_0956 macB; ABC transporter related protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D TMO_b0335 pyoverdine ABC export system, permease/ATP-binding protein K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D TMO_d0049 pyoverdine biosynthesis protein PvdE K06160 pvdE; putative pyoverdin transport system ATP-binding/permease protein D TMO_c0837 yddA; putative ABC transport system, ATP-binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein D TMO_c0253 hfaC; ABC transporter related protein K15738 uup; ABC transport system ATP-binding/permease protein D TMO_2053 ygaD; Putative multidrug export ATP-binding/permease protein ygaD K02021 ABC.MR; putative ABC transport system ATP-binding protein D TMO_1563 cysP; sulfate ABC transporter, sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D TMO_0705 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D TMO_0704 cysT; sulfate transport system permease protein K02046 cysU; sulfate/thiosulfate transport system permease protein D TMO_1562 cysU; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D TMO_0703 cysW; Sulfate ABC transporter permease CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D TMO_1561 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D TMO_0248 cysA; sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D TMO_2979 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D TMO_2980 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D TMO_2981 modC; molybdate transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D TMO_0321 nrtC; putative nitrate transporter component, nrtA K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D TMO_0322 nrtB; putative nitrate transport system permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D TMO_2146 nrtB; nitrate ABC transporter, inner membrane subunit K15577 nrtB; nitrate/nitrite transport system permease protein D TMO_0323 cmpD; nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D TMO_2147 nasD; nitrate ABC transporter, ATPase subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D TMO_2731 ssuA; sulfate ester transport system substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D TMO_2730 ssuC; sulfate ester transport system permease protein K15554 ssuC; sulfonate transport system permease protein D TMO_2729 cmpB; sulfate ester transporter permease protein K15554 ssuC; sulfonate transport system permease protein D TMO_2728 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D TMO_b0350 ABC superfamily ATP binding cassette transporter, binding protein K02012 afuA; iron(III) transport system substrate-binding protein D TMO_2904 extracellular solute-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D TMO_1533 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D TMO_0373 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein D TMO_b0351 inner membrane component of ABC transporter K02011 afuB; iron(III) transport system permease protein D TMO_2905 iron(III) transport system permease protein K02011 afuB; iron(III) transport system permease protein D TMO_1534 Fe(3+)-transport system permease protein sfuB K02011 afuB; iron(III) transport system permease protein D TMO_2906 ugpC; ABC transporter component K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D TMO_1535 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D TMO_b0352 potA; ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D TMO_1393 twin-arginine translocation pathway signal K11069 potD; spermidine/putrescine transport system substrate-binding protein D TMO_1390 potI; binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein D TMO_1391 potB; binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein D TMO_1392 potA; spermidine/putrescine transport system ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TMO_0290 potF; PotF K11073 potF; putrescine transport system substrate-binding protein D TMO_0287 potI; binding-protein dependent transport system inner membrane protein K11074 potI; putrescine transport system permease protein D TMO_0288 potH; binding-protein dependent transport system inner membrane protein K11075 potH; putrescine transport system permease protein D TMO_0289 potG; putrescine transport ATP-binding protein PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D TMO_0019 spermidine/putrescine-binding periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_0434 ABC transporter, periplasmic solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_2533 ydcS; extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_2845 extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_d0030 spermidine/putrescine transport system substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_3489 family 1 extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D TMO_0016 potC; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_0436 potC; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_2842 potI; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_d0028 phnV; ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_d0031 potB; Spermidine/putrescine transport system permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_2536 ydcV; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_3487 modB; binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_3488 cysW; putative permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D TMO_0017 potH; binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D TMO_0435 potB; binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D TMO_2843 potB; binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D TMO_2535 ydcU; binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D TMO_0018 potA; putative spermidine/putrescine ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_0433 potA; ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_2844 potA; ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_d0029 potA; ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_2534 ydcT; ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_3486 potA; putative ABC transporter K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D TMO_2953 proX; Glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D TMO_0868 glycine betaine/proline transport system substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D TMO_2952 proW; histidine transport system permease ABC transporter protein K02001 proW; glycine betaine/proline transport system permease protein D TMO_0869 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D TMO_2951 putative glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D TMO_0870 proV; glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D TMO_1666 osmF; Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein D TMO_1663 yehW; binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D TMO_1665 yehY; binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein D TMO_1664 yehX; ABC transporter related protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D TMO_2473 putative sulfonate/nitrate transport system substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein D TMO_2472 ABC transporter permease protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein D TMO_2471 putative ABC transporter K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein D TMO_3337 ynjB; ABC transporter, periplasmic binding protein K05777 ynjB; putative thiamine transport system substrate-binding protein D TMO_3336 ynjC; inner membrane ABC transporter permease protein YnjC K05778 ynjC; putative thiamine transport system permease protein D TMO_3335 ynjD; ABC transporter related protein K05779 ynjD; putative thiamine transport system ATP-binding protein D TMO_c0499 ssuA; putative sulfonate/nitrate transport system substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D TMO_b0025 NMT1/THI5 like domain protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D TMO_b0146 Pyrimidine precursor biosynthesis enzyme K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D TMO_b0151 NMT1/THI5-like domain-containing protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D TMO_b0177 NMT1/THI5 like domain protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D TMO_b0199 ytlA; nitrate/sulfonate/taurine/bicarbonate ABC superfamily ATP binding cassette transporter, binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D TMO_c0194 ssuA; Putative aliphatic sulfonates-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D TMO_c0883 sulfonate/nitrate/taurine transport system substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D TMO_b0022 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D TMO_b0023 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D TMO_b0144 putative ABC transporter permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D TMO_b0152 ABC transporter, membrane spanning protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D TMO_b0201 ytlD; putative ABC transport proteins, inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D TMO_c0196 tauC; binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D TMO_c0498 binding-protein dependent transport system inner membrane protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D TMO_c0881 sulfonate/nitrate/taurine transport system permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D TMO_c0882 sulfonate/nitrate/taurine transport system permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D TMO_c0497 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D TMO_b0140 ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D TMO_b0153 ABC transporter, nucleotide binding/ATPase protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D TMO_b0200 ytlC; taurine ABC superfamily ATP binding cassette transporter, ABC protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D TMO_c0195 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D TMO_c0880 sulfonate/nitrate/taurine transport system ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D TMO_b0024 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D TMO_c0523 smoK; sugar ABC transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TMO_b0372 ugpC; lactose transport ATP-binding protein LacK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TMO_c0520 putative ABC transporter-binding protein K10236 thuE; trehalose/maltose transport system substrate-binding protein D TMO_c0521 binding-protein-dependent transport systems inner membrane component K10237 thuF; trehalose/maltose transport system permease protein D TMO_c0522 yurM; maltose/maltodextrin ABC transporter permease protein MalG K10238 thuG; trehalose/maltose transport system permease protein D TMO_a0258 chvE; putative sugar uptake ABC transporter periplasmic solute-binding protein precursor K10546 chvE; putative multiple sugar transport system substrate-binding protein D TMO_a0256 xylH; inner membrane permease of D-xylose ABC transporter K10547 gguB; putative multiple sugar transport system permease protein D TMO_a0257 araG; ABC transporter related protein K10548 gguA; putative multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TMO_1289 alsB; D-allose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein D TMO_1291 inner-membrane translocator K10440 rbsC; ribose transport system permease protein D TMO_1146 methyl-galactoside transport system permease protein K10440 rbsC; ribose transport system permease protein D TMO_1147 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D TMO_1290 rbsA; ABC transporter related protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D TMO_a0248 ytfQ; periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein D TMO_a0246 ytfT; sugar ABC transporter permease protein K23509 ytfT; galactofuranose transport system permease protein D TMO_a0245 yjfF; inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein D TMO_a0247 ytfR; sugar ABC transporter ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D TMO_b0098 sugar ABC transporter K17321 glpV; glycerol transport system substrate-binding protein D TMO_b0101 sugar ABC transporter K17322 glpP; glycerol transport system permease protein D TMO_b0100 yurM; binding-protein-dependent transport systems inner membrane component K17323 glpQ; glycerol transport system permease protein D TMO_b0103 ABC transporter related protein K17324 glpS; glycerol transport system ATP-binding protein D TMO_b0102 ABC transporter related protein K17325 glpT; glycerol transport system ATP-binding protein D TMO_3303 ugpB; extracellular solute-binding protein, family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D TMO_1319 ugpB; extracellular solute-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D TMO_3226 ugpB; sn-glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D TMO_3304 ugpA; SN-glycerol-3-phosphate ABC transporter, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D TMO_1318 yurN; inner membrane component of binding-protein-dependent transport system K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D TMO_3227 ugpA; sn-glycerol-3-phosphate ABC transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D TMO_3305 ugpE; sn-glycerol-3-phosphate ABC transporter, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D TMO_1317 araQ; ABC superfamily ATP binding cassette transporter, membrane protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D TMO_3228 ugpE; sn-glycerol-3-phosphate transport system permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D TMO_3306 ugpC; glycerol-3-phosphate transporter ATP-binding subunit K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D TMO_1320 ugpC; ABC superfamily ATP binding cassette transporter, ABC protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D TMO_0676 Transcriptional activator protein med K07335 bmpA; basic membrane protein A and related proteins D TMO_0863 Basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D TMO_c0404 Bmp family membrane protein K07335 bmpA; basic membrane protein A and related proteins D TMO_1195 simple sugar transport system substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D TMO_0861 yufP; permease protein of sugar ABC transporter K23535 nupB; general nucleoside transport system permease protein D TMO_c0406 yufP; inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D TMO_1194 putative simple sugar transport system permease protein K23535 nupB; general nucleoside transport system permease protein D TMO_0674 yufP; inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein D TMO_c0407 branched chain amino acid ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D TMO_0673 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D TMO_0860 yufQ; inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein D TMO_1193 ABC transporter permease protein K23536 nupC; general nucleoside transport system permease protein D TMO_0675 yufO; ABC transporter component K23537 nupA; general nucleoside transport system ATP-binding protein D TMO_c0405 yufO; ABC transporter related protein K23537 nupA; general nucleoside transport system ATP-binding protein D TMO_0862 yufO; ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D TMO_1191 yufO; putative ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D TMO_c0739 ABC superfamily ATP binding cassette transporter substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D TMO_1399 ABC transport system substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D TMO_1875 putative ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D TMO_1401 ABC transport system permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D TMO_1876 putative ribonucleotide transport ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D TMO_1400 ABC transporter related protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D TMO_1398 lipoprotein, putative K18480 linN; cholesterol transport system auxiliary component D TMO_0822 mlaC; toluene tolerance transporter K07323 mlaC; phospholipid transport system substrate-binding protein D TMO_b0375 sugar binding protein of ABC transporter K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D TMO_b0373 yurN; binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D TMO_b0374 yesQ; binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D TMO_b0347 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D TMO_3505 sphX; phosphate ABC transporter, periplasmic binding protein K02040 pstS; phosphate transport system substrate-binding protein D TMO_b0346 pstC; phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D TMO_3506 yqgH; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D TMO_b0345 pstA; phosphate ABC transporter permease protein K02038 pstA; phosphate transport system permease protein D TMO_3507 yqgI; phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D TMO_b0344 pstB; high-affinity phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D TMO_3508 Phosphate import ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D TMO_2091 phnD; binding protein component of ABC phosphonate transporter K02044 phnD; phosphonate transport system substrate-binding protein D TMO_2090 phnE; phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D TMO_2092 phnC; Phosphonates ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D TMO_3086 aotP; Arginine/ornithine transport ATP-binding protein aotP K10021 occP; octopine/nopaline transport system ATP-binding protein [EC:7.4.2.1] D TMO_b0466 aapJ; general L-amino acid transport system substrate-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D TMO_2514 aapJ; general L-amino acid transport system substrate-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D TMO_b0465 yhdY; amino acid ABC transporter permease K09970 aapQ; general L-amino acid transport system permease protein D TMO_2513 yhdX; putative amino acid ABC transporter permease protein K09970 aapQ; general L-amino acid transport system permease protein D TMO_2512 aapM; general L-amino acid transport system permease protein K09971 aapM; general L-amino acid transport system permease protein D TMO_2511 aapP; ABC transporter component K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D TMO_b0464 aapP; General L-amino acid transport ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D TMO_b0089 artI; extracellular solute-binding protein K23061 lhpP; hydroxyproline transporter system substrate-binding protein D TMO_b0090 yecS; ABC transporter, membrane spanning protein (amino acid) K23062 lhpM; hydroxyproline transport system permease protein D TMO_b0091 gltK; putative amino acid ABC transporter permease protein K23063 lhpN; hydroxyproline transport system permease protein D TMO_b0092 glnQ; putative amino acid ABC transporter ATP-binding protein K23064 lhpO; hydroxyproline transport system ATP-binding protein [EC:7.4.2.1] D TMO_0326 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0466 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0475 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0932 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0501 amiC; two component sensor kinase K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0512 Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0433 putative branched-chain amino acid ABC transporter, periplasmic substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0575 Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0768 livK; Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_3066 branched-chain amino acid transport system substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2012 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0164 putative branched-chain amino acid transport system substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_b0239 ABC branched chain amino acid transporter, periplasmic ligandbinding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2138 putative ABC branched-chain amino transporter, periplasmic binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0793 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0800 putative periplasmic substrate-binding protein, ABC-type amino acid ABC transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2044 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0637 ABC transporter, periplasmic branched chain amino acid binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_3096 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_3499 branched chain amino acid ABC transporter amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0294 braC; branched chain amino acid ABC transporter periplasmic ligand-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_2134 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0399 branched-chain amino acid transport system substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0419 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_b0186 branched-chain amino acid ABC superfamily ATP binding cassette transporter, binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_b0440 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0227 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_0928 ABC-type branched-chain amino acid transporter K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_1642 putative branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_a0499 livK; putative leucine/isoleucine/valine-binding protein precursor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0761 braC; extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D TMO_c0751 livH; hydrophobic amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D TMO_c0931 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_1646 livH; putative ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_c0432 branched-chain amino acid ABC transporter K01997 livH; branched-chain amino acid transport system permease protein D TMO_c0770 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_3064 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_2009 braD; putative amino acid or sugar ABC transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0166 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0496 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_b0238 braD; ABC branched chain amino acid transporter, inner membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D TMO_0801 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_2049 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_0636 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_3092 livH; branched-chain amino acid ABC transporter (permease) K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0295 braD; ABC branched chain amino acid family transporter, inner membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D TMO_2135 branched chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0228 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0400 braD; branched-chain amino acid ABC transporter permease protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_a0418 braD; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_b0441 braD; ABC superfamily ATP binding cassette transporter, membrane protein K01997 livH; branched-chain amino acid transport system permease protein D TMO_0927 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_0327 livH; inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein D TMO_0802 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_0328 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_2048 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_1645 livM; branched chain amino acid ABC transporter inner membrane protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_0635 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_2136 livM; ABC-type branched-chain amino acid transport system, permease component K01998 livM; branched-chain amino acid transport system permease protein D TMO_3065 livM; branched-chain amino acid transport system permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_3093 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0296 braE; High-affinity branched-chain amino acid transport system permease protein braE K01998 livM; branched-chain amino acid transport system permease protein D TMO_2008 putative amino acid or sugar ABC transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0165 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0495 livM; ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_b0237 ABC branched chain amino acid transporter, inner membrane subunit K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0229 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0401 amino acid ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_a0417 livM; putative ABC transport system, membrane protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_b0442 livM; ABC superfamily ATP binding cassette transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0930 ABC transporter permease protein K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0752 braE; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0769 livM; inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein D TMO_c0929 livG; ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_c0431 braF; ABC superfamily ATP binding cassette transporter, ABC protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_c0749 livG; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_c0771 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_3062 braF; high-affinity branched-chain amino acid transport ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_2011 braF; ABC transporter ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0168 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0498 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_b0236 livG; ABC branched chain amino acid transporter, ATPase subunit K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0803 livG; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_2047 livG; ABC transporter component K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_1644 braF; High-affinity branched-chain amino acid transport ATP-binding protein braF K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0634 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_3094 braF; branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0297 braF; branched-chain amino acid ABC transporter ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0925 braF; branched-chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_2132 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0230 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0402 lptB; ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_a0416 braF; putative ABC transport system, ATP-bidning protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_b0443 braF; ABC transporter related protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D TMO_0330 livF; ABC transporter component K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_2046 livF; branched-chain amino acid transport system ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_0924 livF; branched-chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_1643 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_0633 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_2133 livF; ABC-type branched-chain amino acid transport systems, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_3067 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_3095 livF; branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0298 braG; High-affinity branched-chain amino acid transport ATP-binding protein braG K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_2010 livF; High-affinity branched-chain amino acid transport ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0163 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0497 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_b0235 livF; ABC branched chain amino acid transporter, ATPase subunit K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0231 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0403 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_a0415 braG; branched chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_b0444 livF; branched-chain amino acid ABC superfamily ATP binding cassette transporter, ABC protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0928 livF; ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0430 braG; putative high-affinity branched-chain amino acid transport ATP-binding proteinputative K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0750 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_c0767 livF; ABC transporter related protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D TMO_1015 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein D TMO_1766 plpC; NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D TMO_3493 YaeC family lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D TMO_3494 metQ; D-methionine ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein D TMO_d0017 metI; binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D TMO_d0018 metN; D-methionine transport system ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D TMO_1722 amiC; ABC-type branched-chain amino acid transport system, periplasmic component K11959 urtA; urea transport system substrate-binding protein D TMO_0499 amiC; Aliphatic amidase expression-regulating protein K11959 urtA; urea transport system substrate-binding protein D TMO_b0472 urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein D TMO_b0398 amino acid ABC transporter K11959 urtA; urea transport system substrate-binding protein D TMO_b0409 putative Leu/Ile/Val/Thr/Ala-binding protein K11959 urtA; urea transport system substrate-binding protein D TMO_b0410 ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D TMO_b0473 braD; urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D TMO_0498 braD; putative permease component of ABC transporter K11960 urtB; urea transport system permease protein D TMO_1723 livH; High-affinity branched-chain amino acid transport system permease protein livH K11960 urtB; urea transport system permease protein D TMO_b0408 livH; urea or short-chain amide ABC transporter K11960 urtB; urea transport system permease protein D TMO_b0474 urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D TMO_1724 livM; branched chain amino acid ABC transporter permease K11961 urtC; urea transport system permease protein D TMO_0497 livM; putative branched-chain amino acid ABC transporter, permease protein K11961 urtC; urea transport system permease protein D TMO_b0407 urea or short-chain amide ABC transporter K11961 urtC; urea transport system permease protein D TMO_1725 braF; putative ATP-binding component of ABC transporter K11962 urtD; urea transport system ATP-binding protein D TMO_b0475 braF; urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D TMO_0496 braF; branched chain amino acid ABC transporter ATP-binding protein K11962 urtD; urea transport system ATP-binding protein D TMO_b0406 braF; urea or short-chain amide ABC transporter K11962 urtD; urea transport system ATP-binding protein D TMO_0495 braG; putative branched-chain amino acid ABC transporter, ATP-binding protein K11963 urtE; urea transport system ATP-binding protein D TMO_1726 livF; ABC transporter, nucleotide binding/ATPase protein (urea/amide) K11963 urtE; urea transport system ATP-binding protein D TMO_b0476 livF; putative ABC transporter ATP-binding component K11963 urtE; urea transport system ATP-binding protein D TMO_b0405 livF; ABC superfamily ATP binding cassette transporter, ABC protein K11963 urtE; urea transport system ATP-binding protein D TMO_0160 ABC superfamily ATP binding cassette transporter, binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D TMO_0161 ABC-type transport system, permease component K05832 K05832; putative tryptophan/tyrosine transport system permease protein D TMO_0162 Cobalt import ATP-binding protein cbiO 2 K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D TMO_3089 hisQ; polar amino acid ABC transporter, inner membrane subunit K23056 K23056; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D TMO_3090 occM; polar amino acid transport system permease protein K23057 K23057; putative lysine/arginine/ornithine/histidine/octopine transport system permease protein D TMO_2865 fliY; extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TMO_c0464 glnH; amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TMO_d0043 artJ; ABC-type amino acid transport K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TMO_b0056 pheC; extracellular solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TMO_3088 occT; extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TMO_2863 yecS; polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D TMO_2864 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D TMO_c0462 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D TMO_c0463 yecS; glutamine ABC superfamily ATP binding cassette transporter, membrane protein K02029 ABC.PA.P; polar amino acid transport system permease protein D TMO_d0044 glnM; amino acid ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein D TMO_b0057 glnP; polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D TMO_b0058 tcyC; ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D TMO_c0461 glnQ; polar amino acid transport system ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D TMO_2862 glnQ; Glutamine transport ATP-binding protein glnQ K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D TMO_d0045 tcyC; amino acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D TMO_3019 dppA; dipeptide-binding ABC transporter substrate-binding component K12368 dppA; dipeptide transport system substrate-binding protein D TMO_3018 dppB; nickel-transporting ATPase K12369 dppB; dipeptide transport system permease protein D TMO_3017 dppC; peptide/nickel transport system permease protein K12370 dppC; dipeptide transport system permease protein D TMO_3016 dppD; dipeptide ABC superfamily ATP binding cassette transporter, ABC protein K12371 dppD; dipeptide transport system ATP-binding protein D TMO_3015 dppF; DppF K12372 dppF; dipeptide transport system ATP-binding protein D TMO_0296 hbpA; extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_0270 gsiB; ABC transporter substrate binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_b0493 gsiB; extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_c0346 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_2724 gsiB; extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_2847 gsiB; peptide/nickel transport system substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_c0450 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_a0349 ABC superfamily ATP binding cassette transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_b0038 ABC superfamily ATP binding cassette transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_b0382 extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_1418 extracellular solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_2025 agpA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_1030 ABC superfamily ATP binding cassette transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_1185 dppA; oligopeptide ABC transpoter oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_3347 gsiB; extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_a0027 putative ABC transporter, periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_a0131 hbpA; extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_b0268 twin-arginine translocation pathway signal K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TMO_0295 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_0271 appB; oligopeptide ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_b0042 Putative peptide transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_b0492 putative oligopeptide ABC transporter (permease) K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_2725 gsiC; binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_c0451 dppB; binding-protein dependent transport system inner membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_a0343 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_b0381 inner membrane component of binding-protein-dependent transport system K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_1419 dppB; ABC transporter membrane spanning protein (oligopeptide) K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_2026 appB; oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_1031 appB; oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_1182 gsiC; binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_2848 dppB; ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_a0025 putative ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_a0130 ddpB; binding-protein dependent transport system inner membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_b0266 gsiC; binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_c0347 dppB; ABC transporter permease protein 2 K02033 ABC.PE.P; peptide/nickel transport system permease protein D TMO_0294 dppC; Dipeptide transport system permease protein dppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_0272 appC; ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_a0342 Putative peptide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_b0041 Dipeptide transport system permease protein dppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_c0348 ddpC; ABC transporter permease protein 1 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_b0491 dppC; binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_2726 appC; ABC transporter, membrane spanning protein (oligopeptide) K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_c0452 appC; binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_b0380 inner membrane component of binding-protein-dependent transport system K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_1420 ddpC; binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_2027 appC; putative oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_1032 appC; ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_1181 appC; ABC transporter permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_2849 appC; peptide/nickel transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_a0024 putative ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_a0129 ddpC; ABC transporter permease protein 1 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_b0267 appC; binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D TMO_0273 gsiA; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_a0128 Oligopeptide/dipeptide transporter domain family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_2850 gsiA; ABC superfamily ATP binding cassette transporter, ABC protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0040 gsiA; ABC superfamily ATP binding cassette transporter, ABC protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_c0349 gsiA; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0495 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_c0453 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_a0341 gsiA; oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0379 dppD; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_1421 dppD; ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_2024 gsiA; putative mureinpeptideoligopeptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_1025 gsiA; ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_1184 ABC transporter ATP binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_a0023 gsiA; putative ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0265 gsiA; putative ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_0293 appD; oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_2723 gsiA; ABC transporter, nucleotide binding/ATPase protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D TMO_b0494 ykfD; oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D TMO_3188 ABC-type oligopeptide transport system, periplasmic component K13893 yejA; microcin C transport system substrate-binding protein D TMO_3187 yejB; peptide/nickel transport system permease protein K13894 yejB; microcin C transport system permease protein D TMO_3186 yejE; binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein D TMO_3185 yejF; putative ATP-binding component of ABC transporter K13896 yejF; microcin C transport system ATP-binding protein D TMO_a0121 fhuD; Iron(3+)-hydroxamate-binding protein fhuD K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D TMO_b0221 periplasmic component, ABC-type hydroxamate-dependent iron transport system K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D TMO_b0333 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D TMO_d0052 iron complex transport system substrate-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D TMO_b0219 fhuB; transporter K23228 fhuB; ferric hydroxamate transport system permease protein D TMO_b0334 fhuB; iron-hydroxamate transporter permease subunit K23228 fhuB; ferric hydroxamate transport system permease protein D TMO_d0051 fhuB; transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein D TMO_a0122 fhuC; iron-hydroxamate transporter ATP-binding subunit K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D TMO_b0220 fhuC; ABC-type hydroxamate-dependent iron transport system, ATPase component K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D TMO_b0332 fhuC; ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D TMO_d0048 fhuC; ABC transporter related protein K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D TMO_1333 hmuT; periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein D TMO_1334 hmuU; putative ABC-type Fe3+-siderophore transport system, permease component K25133 hmuU; heme transport system permease protein D TMO_1335 hmuV; ABC-type hemin transport system, ATPase component K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D TMO_1858 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D TMO_2922 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D TMO_1938 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D TMO_2763 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D TMO_c0865 solute-binding periplasmic protein of iron/siderophore ABC transporter K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D TMO_a0119 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D TMO_1859 yvrB; transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D TMO_2921 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D TMO_1939 yfiZ; transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D TMO_2920 hmuV; ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D TMO_1940 yclP; ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D TMO_2288 hmuV; ABC transporter related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D TMO_1860 fecE; iron(III) dicitrate transport ATP-binding protein FecE K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D TMO_2290 yvrC; Fe3+-hydroxamate ABC superfamily ATP binding cassette transporter periplasmic family protein K25034 btuF; cobalamin transport system substrate-binding protein D TMO_2289 transport system permease protein K25027 btuC; cobalamin transport system permease protein D TMO_1385 znuA; periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D TMO_1388 znuB; permease of ABC zinc transporter ZnuB K09816 znuB; zinc transport system permease protein D TMO_1387 znuC; high-affinity zinc uptake system ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TMO_2734 iron ABC transporter substrate binding protein K11604 sitA; manganese/iron transport system substrate-binding protein D TMO_2736 yfeC; Chelated iron transport system membrane protein yfeC K11605 sitC; manganese/iron transport system permease protein D TMO_2737 yfeD; Chelated iron transport system membrane protein yfeD K11606 sitD; manganese/iron transport system permease protein D TMO_2735 yfeB; ABC transporter related protein K11607 sitB; manganese/iron transport system ATP-binding protein D TMO_2937 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein D TMO_2935 cobalt transport integral membrane protein K02008 cbiQ; cobalt/nickel transport system permease protein D TMO_2936 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D TMO_2938 cbiM; cobalamin biosynthesis protein cbim K02007 cbiM; cobalt/nickel transport system permease protein D TMO_2934 Cobalt transport protein ATP-binding subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein D TMO_0728 bioY; putative biotin transporter bioY K03523 bioY; biotin transport system substrate-specific component D TMO_2594 bioY; putative biotin transporter bioY K03523 bioY; biotin transport system substrate-specific component D TMO_1282 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D TMO_1281 mntC; ABC transporter permease protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D TMO_1280 mntB; ABC transporter component K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D TMO_1847 putative permease K07091 lptF; lipopolysaccharide export system permease protein D TMO_1848 putative permease K11720 lptG; lipopolysaccharide export system permease protein D TMO_0178 ABC transporter, ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D TMO_c0217 ybhR; multidrug ABC transporter permease component K25180 ybhR; drug efflux transport system permease protein D TMO_c0220 ybhF; ABC transporter related protein K25182 ybhF; drug efflux transport system ATP-binding protein D TMO_c0221 membrane protein K25183 ybhG; membrane fusion protein YbhG D TMO_1951 lolC; lipoprotein-releasing system permease protein K09808 lolC_E; lipoprotein-releasing system permease protein D TMO_1950 lolD; ABC transporter related protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TMO_2997 lolD; ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TMO_3080 hypothetical protein K02196 ccmD; heme exporter protein D D TMO_3079 cycZ; heme exporter protein CcmC K02195 ccmC; heme exporter protein C D TMO_3078 helB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D TMO_3077 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D TMO_0132 cell division protein K09811 ftsX; cell division transport system permease protein D TMO_0131 ftsE; putative ATPase involved in cell division K09812 ftsE; cell division transport system ATP-binding protein D TMO_0020 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D TMO_0401 yadH; Inner membrane transport permease yadH K01992 ABC-2.P; ABC-2 type transport system permease protein D TMO_2545 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D TMO_c0218 ybhS; multidrug ABC transporter permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D TMO_c0219 putative ABC transporter permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D TMO_2157 yhhJ; ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D TMO_3482 yhhJ; Inner membrane transport permease yhhJ K01992 ABC-2.P; ABC-2 type transport system permease protein D TMO_1233 ABC transporter permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D TMO_0021 nodI; ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D TMO_1232 yfiL; ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D TMO_2544 yvfR; ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D TMO_3209 yadG; ABC-type multidrug transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D TMO_a0071 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D TMO_2998 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D TMO_3196 ybbP; ABC transporter permease ybbP K02004 ABC.CD.P; putative ABC transport system permease protein D TMO_a0072 macB; Macrolide export ATP-binding/permease protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D TMO_3197 ybbA; ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D TMO_0106 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D TMO_2455 putative transmembrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D TMO_0754 norM; MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D TMO_3143 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump D TMO_b0066 yoeA; MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D TMO_a0550 pcaK; 3-hydroxyphenylpropionic acid K08195 pcaK; MFS transporter, AAHS family, 4-hydroxybenzoate transporter D TMO_c0619 cyanate transport system protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D TMO_b0196 QbsM like protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D TMO_a0484 major facilitator transporter K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter D TMO_b0450 narK; nitrite transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D TMO_3451 ampG; major facilitator superfamily permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D TMO_c0416 major facilitator transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D TMO_0009 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D TMO_0222 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D TMO_2585 transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D TMO_1684 ydgK; drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D TMO_2555 Bcr/CflA subfamily drug resistance transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D TMO_1947 ydgK; drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D TMO_2118 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D TMO_0514 ybcL; putative efflux transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D TMO_0364 ydhP; putative transmembrane efflux precursor protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D TMO_1139 ywfA; MFS-type transporter ywfA K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D TMO_b0182 ytbD; major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D TMO_b0299 lmrB; Lincomycin resistance protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D TMO_0751 Multidrug resistance protein B K08152 lmrP; MFS transporter, DHA1 family, multidrug resistance protein B D TMO_a0277 pmrA; major facilitator transporter K08164 ybcL; MFS transporter, DHA1 family, putative efflux transporter D TMO_2868 emrB; multidrug efflux protein (MFS-family transporter) K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D TMO_2899 emrB; major facilitator superfamily permease K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D TMO_b0538 yebQ; major facilitator superfamily MFS_1 K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D TMO_0731 ynfM; Inner membrane transport protein ynfM K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D TMO_0257 Major facilitator superfamily domain-containing protein 3 K05373 ybtX; MFS transporter, putative signal transducer D TMO_0376 ptsP; Signal transduction protein containing GAF and PtsI domains K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D TMO_0171 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D TMO_0420 fruB; phosphotransferase system, enzyme I K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D TMO_0422 fruA; PTS system, fructose-specific IIC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D TMO_0172 manX; PTS system, IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D TMO_0175 ptsN; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TMO_0411 Ion transport 2 domain protein K10716 kch; voltage-gated potassium channel D TMO_3139 ammonium transporter K03320 amt; ammonium transporter, Amt family D TMO_b0019 amtB; ammonium transporter K03320 amt; ammonium transporter, Amt family D TMO_0188 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_c0274 gstB; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_c0525 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_2489 glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_c0816 gst3; glutathione S-transferase domain-containing protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_c0729 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_a0392 glutathione S-transferase protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_3108 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_0150 yibF; Glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_a0451 gst3; Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D TMO_c0173 ywmD; von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog D TMO_1337 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D TMO_3307 mscS; MscS mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D TMO_0400 ybiO; MscS Mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel D TMO_b0532 ybiO; mscS family protein ybiO K22044 ybiO; moderate conductance mechanosensitive channel D TMO_2591 divalent cation transporter K06213 mgtE; magnesium transporter D TMO_1242 pomA; chemotaxis protein K02556 motA; chemotaxis protein MotA D TMO_2876 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D TMO_1106 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D TMO_0875 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D TMO_2875 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D TMO_2675 exbB; tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB D TMO_1341 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D TMO_2676 exbD; biopolymer transport protein K03559 exbD; biopolymer transport protein ExbD D TMO_1342 hypothetical protein K03559 exbD; biopolymer transport protein ExbD D TMO_1343 hypothetical protein K03559 exbD; biopolymer transport protein ExbD D TMO_0903 biopolymer transport protein K03562 tolQ; biopolymer transport protein TolQ D TMO_0904 tolR; biopolymer transport protein K03560 tolR; biopolymer transport protein TolR D TMO_2070 corA; Mg2 transporter protein CorA family protein K03284 corA; magnesium transporter D TMO_c0197 zntB; Mg2+ transporter protein, CorA-like protein K16074 zntB; zinc transporter D TMO_2604 crcB; crcB protein K06199 crcB; fluoride exporter D TMO_c0075 merT; putative mercuric transport protein K08363 merT; mercuric ion transport protein D TMO_c0074 merP; mercuric transport protein periplasmic protein K08364 merP; periplasmic mercuric ion binding protein D TMO_1531 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family D TMO_0343 yfjD; Mg2+ and Co2+ transporter CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family D TMO_3424 Outer membrane protein (porin) K08720 ompU; outer membrane protein OmpU D TMO_0407 Outer membrane protein and related peptidoglycan-associated lipo protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D TMO_2566 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D TMO_0386 outer membrane autotransporter barrel domain-containing protein K12685 ssp; subtilase-type serine protease [EC:3.4.21.-] D TMO_2291 btuB; TonB-dependent receptor K16092 btuB; vitamin B12 transporter D TMO_1358 btuB; TonB-dependent receptor K16092 btuB; vitamin B12 transporter D TMO_1857 btuB; TonB-dependent receptor K16092 btuB; vitamin B12 transporter D TMO_2761 btuB; receptor K16092 btuB; vitamin B12 transporter D TMO_0258 fyuA; TonB-dependent receptor K15721 fyuA; pesticin/yersiniabactin receptor D TMO_1892 pbuA; TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D TMO_2924 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D TMO_1302 irgA; TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D TMO_2072 addiction module killer protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D TMO_c0553 tdhA; TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D TMO_2588 bhuA; TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D TMO_c0836 hmuR; TonB-dependent receptor plug K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D TMO_1330 hxuC; TonB-dependent hemoglobin K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D TMO_3373 hemR; iron complex outermembrane recepter protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D TMO_a0576 heme receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D TMO_0424 foxA; TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_a0198 fyuA; TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_b0080 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_0390 fhuA; outer membrane ferripyochelin receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_b0331 ferrichrome-iron transporter K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_1312 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_2267 fhuA; TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_1045 foxA; TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_2701 fhuA; ferrichrome-iron receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_c0417 fyuA; TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_c0866 OMR family ferrichrome outer membrane transporter K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_c0937 yncD; putative TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_b0222 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_a0123 ferrichrome receptor precursor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_d0053 foxA; putative TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D TMO_c0003 CzcC family heavy metal RND efflux outer membrane protein K15725 czcC; outer membrane protein, heavy metal efflux system D TMO_1910 bepC; TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein D TMO_1517 bepC; type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D TMO_1064 TolC family type I secretion outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system D TMO_2665 silC; RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D TMO_1736 polysaccharide export protein K20987 pslD; polysaccharide biosynthesis/export protein PslD D TMO_0711 kpsD; polysaccharide biosynthesis/export protein K01991 wza; polysaccharide biosynthesis/export protein D TMO_1774 yaeT; outer membrane protein K07277 SAM50; outer membrane protein insertion porin family D TMO_1885 yfgL; PQQ enzyme repeat family protein K17713 bamB; outer membrane protein assembly factor BamB D TMO_c0232 DNA uptake lipoprotein K05807 bamD; outer membrane protein assembly factor BamD D TMO_2078 ytfM; surface antigen K07278 tamA; translocation and assembly module TamA D TMO_2077 hypothetical protein K09800 tamB; translocation and assembly module TamB D TMO_0179 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D TMO_0180 lipopolysaccharide export system protein LptC K11719 lptC; lipopolysaccharide export system protein LptC D TMO_1849 lptD; Organic solvent tolerance protein OstA K04744 lptD; LPS-assembly protein D TMO_3421 LPS-assembly lipoprotein K03643 lptE; LPS-assembly lipoprotein D TMO_1081 hypothetical protein K20543 bcsC; cellulose synthase operon protein C D TMO_3534 CBS domain-containing protein K06189 corC; hemolysin (HlyC) family protein D TMO_0362 cidA; LrgA family protein K06518 cidA; holin-like protein D TMO_3266 yecA; amino acid transporter K16263 yjeH; amino acid efflux transporter D TMO_0989 fieF; cation efflux protein K13283 fieF; ferrous-iron efflux pump FieF D TMO_1433 cation efflux protein precursor K13283 fieF; ferrous-iron efflux pump FieF D TMO_2141 Zinc transporter K07238 TC.ZIP; zinc transporter, ZIP family D TMO_3518 hypothetical protein K18305 mexG; transmembrane protein D TMO_3520 RND efflux transporter K18307 mexI; multidrug efflux pump D TMO_1384 nolG; acriflavin resistance protein K18303 mexK; multidrug efflux pump D TMO_2246 bepE; hydrophobe/amphiphile efflux-1 (HAE1) family protein K19594 gesB; gold/copper resistance efflux pump D TMO_c0600 cation/multidrug efflux pump protein K18138 acrB; multidrug efflux pump D TMO_c0127 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D TMO_c0591 hydrophobic/amphiphilic exporter-1 K18138 acrB; multidrug efflux pump D TMO_2666 bepE; hydrophobe/amphiphile efflux-1 (HAE1) family protein K18138 acrB; multidrug efflux pump D TMO_1163 mdtC; AcrB K18989 vexF; multidrug efflux pump D TMO_c0024 bepE; transporter, HAE1 family K19585 oqxB; multidrug efflux pump D TMO_3193 qacE; small multidrug resistance protein K03297 emrE; small multidrug resistance pump D TMO_1200 sugE; small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D TMO_c0252 eamA; integral membrane protein K15268 eamA; O-acetylserine/cysteine efflux transporter D TMO_0738 pecM; putative transmembrane protein K15269 pecM; probable blue pigment (indigoidine) exporter D TMO_1306 ywfM; transporter ywfM K03298 TC.DME; drug/metabolite transporter, DME family D TMO_2766 rhtA; Inner membrane transporter rhtA K11939 rhtA; inner membrane transporter RhtA D TMO_0187 RarD protein K05786 rarD; chloramphenicol-sensitive protein RarD D TMO_c0713 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D TMO_a0467 membrane protein K09771 TC.SMR3; small multidrug resistance family-3 protein D TMO_0079 L-lactate permease K03303 lutP; lactate permease D TMO_c0335 L-lactate permease K03303 lutP; lactate permease D TMO_0115 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein D TMO_1853 yrbG; sodium/calcium exchanger K07301 yrbG; cation:H+ antiporter D TMO_0811 Na+/solute symporter (Ssf family) K14393 actP; cation/acetate symporter D TMO_c0526 dctA; sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein D TMO_2156 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D TMO_2430 yjcE; Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D TMO_2330 cvrA; sodium/hydrogen exchanger K11105 cvrA; potassium/hydrogen antiporter D TMO_0669 sodium/hydrogen exchanger family protein K03316 nhaP; Na+:H+ antiporter D TMO_1467 sodium/hydrogen exchanger K03316 nhaP; Na+:H+ antiporter D TMO_3300 kefC; potassium efflux system protein K03455 KEA1_2_3; K+:H+ antiporter D TMO_c0592 ybaL; potassium efflux system protein K26735 KEA4_5_6; K+:H+ antiporter D TMO_3331 trkH; trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein D TMO_1701 trkA; Trk system potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D TMO_1442 xanthine/uracil/vitamin C permease K16345 xanP; xanthine permease XanP D TMO_1954 xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D TMO_3322 benE; benzoate transporter K05782 benE; benzoate membrane transport protein D TMO_2143 ydcO; benzoate transporter subfamily K05782 benE; benzoate membrane transport protein D TMO_0652 chromate transporter K07240 chrA; chromate transporter D TMO_c0021 chromate transporter K07240 chrA; chromate transporter D TMO_1264 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D TMO_a0207 ybaR; sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D TMO_b0032 yvdB; sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D TMO_0242 dctP; putative C4 dicarboxylate binding protein K11688 dctP; C4-dicarboxylate-binding protein DctP D TMO_0664 dctP; c4-dicarboxylate-binding periplasmic protein K11688 dctP; C4-dicarboxylate-binding protein DctP D TMO_0243 Tripartite ATP-independent periplasmic transporter DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D TMO_a0437 tripartite ATP-independent periplasmic transporter DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D TMO_c0363 C4-dicarboxylate TRAP-T family tripartite ATP-independent periplasmic transporter, membrane protein, large subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0438 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_0244 siaT; TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_0147 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_1406 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_0558 putative membrane permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_1804 TRAP-T family protein transporter, DctM (12 TMs) subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_2126 siaT; TRAP transporter, DctM-like membrane protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_2526 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_0700 siaT; trap dicarboxylate transporter, dctm subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_1274 siaT; TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0176 siaT; putative DctM (C4-dicarboxylate permease, large subunit) K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0515 trap dicarboxylate transporter, dctm subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_b0566 Putative TRAP transporter large permease protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0389 siaT; TRAP transporter, DctM-like membrane protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0537 Putative TRAP transporter large permease protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_a0573 TRAP-T family protein transporter, DctM (12 TMs) subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_b0289 siaT; TRAP transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_c0258 TRAP dicarboxylate transporter, DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit D TMO_b0424 TRAP transporter, DctM subunit subfamily K21393 yiaN; TRAP-type transport system large permease protein D TMO_0557 yiaM; Tripartite ATP-independent periplasmic transporter DctQ component K21394 yiaM; TRAP-type transport system small permease protein D TMO_a0175 TRAP-type C4-dicarboxylate transport system small permease component K21394 yiaM; TRAP-type transport system small permease protein D TMO_c0362 TRAP-type C4-dicarboxylate transport system small permease K21394 yiaM; TRAP-type transport system small permease protein D TMO_c0916 DctQ9 K21394 yiaM; TRAP-type transport system small permease protein D TMO_0556 yiaO; 2,3-diketo-L-gulonate-binding periplasmic protein yiaO K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_1202 TRAP dicarboxylate transporter-DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_0702 dctB; Bacterial extracellular solute-binding protein, family 7 K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_a0436 siaP; TRAP dicarboxylate transporter-DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_3258 trap dicarboxylate transporter-dctp subunit K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_a0174 deoxycytidine triphosphate (dCTP) deaminase K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_a0513 dctP; putative dicarboxylate-binding periplasmic protein K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_b0365 Bacterial extracellular solute-binding protein, family 7 K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_a0387 Bacterial extracellular solute-binding protein, family 7 K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_b0426 trap dicarboxylate transporter-dctp subunit K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_c0645 putative periplasmic substrate-binding transport protein K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_c0917 siaP; TRAP dicarboxylate transporter, DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D TMO_c0425 yjbB; Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter D TMO_1529 yqeW; Na+/Picotransporter K03324 yjbB; phosphate:Na+ symporter D TMO_c0337 arsB; arsenical-resistance protein K03325 ACR3; arsenite transporter D TMO_c0018 putative sodium bile acid symporter family protein K03325 ACR3; arsenite transporter D TMO_2477 Na+/H+ antiporter MnhB subunit-related protein K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D TMO_2478 putative monovalent cation/H+ antiporter subunit B K05566 mnhB; multicomponent Na+:H+ antiporter subunit B D TMO_2479 phaC; NADH-ubiquinone oxidoreductase chain 4L K05567 mnhC; multicomponent Na+:H+ antiporter subunit C D TMO_2480 NADH dehydrogenase (quinone) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D TMO_2481 NADH dehydrogenase (quinone) K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D TMO_2483 putative monovalent cation/H+ antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D D TMO_2474 cation antiporter K05569 mnhE; multicomponent Na+:H+ antiporter subunit E D TMO_2475 multiple resistance and pH regulation protein F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F D TMO_2476 monovalent cation/proton antiporter, MnhG/PhaG subunit K05571 mnhG; multicomponent Na+:H+ antiporter subunit G D TMO_3491 mviN; virulence factor K03980 murJ; putative peptidoglycan lipid II flippase D TMO_0942 mdcF; malonate transporter K13936 mdcF; malonate transporter and related proteins D TMO_2543 auxin efflux carrier K13936 mdcF; malonate transporter and related proteins D TMO_0342 permease K24180 mleP; malate permease and related proteins D TMO_0442 arginine exporter protein ArgO K06895 lysE; L-lysine exporter family protein LysE/ArgO D TMO_3511 lysine exporter protein LysE/YggA K05834 rhtB; homoserine/homoserine lactone efflux protein D TMO_c0830 amino acid efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D TMO_1959 rhtC; lysine exporter family protein K05835 rhtC; threonine efflux protein D TMO_1208 ygaZ; AzlC family protein K26605 azlC; branched chain amino acid efflux pump D TMO_1209 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D TMO_0367 52.8 kDa protein in TAR-I ttuC' 3'region K07793 tctA; putative tricarboxylic transport membrane protein D TMO_2275 hypothetical protein K07793 tctA; putative tricarboxylic transport membrane protein D TMO_c0584 integral membrane protein K07793 tctA; putative tricarboxylic transport membrane protein D TMO_0368 tricarboxylic transport K07794 tctB; putative tricarboxylic transport membrane protein D TMO_2276 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D TMO_c0583 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D TMO_0369 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D TMO_2277 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D TMO_c0582 hypothetical protein K07795 tctC; putative tricarboxylic transport membrane protein D TMO_0319 hypothetical protein K09125 yhhQ; queuosine precursor transporter D TMO_3315 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D TMO_c0242 ftsW; putative cell division protein ftsW K03588 ftsW; cell division protein FtsW D TMO_c0934 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family D TMO_c0559 efeU; iron permease FTR1 K07243 FTR; high-affinity iron transporter D TMO_c0556 hypothetical protein K07224 efeO; iron uptake system component EfeO D TMO_c0558 hypothetical protein K07224 efeO; iron uptake system component EfeO D TMO_c0557 ycdB; Dyp-type peroxidase family protein K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D TMO_0505 membrane protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein D TMO_1344 tonB; TonB-like protein K03832 tonB; periplasmic protein TonB D TMO_2677 tonB; TonB family protein K03832 tonB; periplasmic protein TonB D TMO_0908 Outer membrane protein and related peptidoglycan-associated lipo protein K03640 pal; peptidoglycan-associated lipoprotein D TMO_0907 tolB; translocation protein TolB K03641 tolB; TolB protein D TMO_2798 dsbD; Thiol:disulfide interchange protein K08344 scsB; suppressor for copper-sensitivity B D TMO_b0451 narG; nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D TMO_b0452 narY; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D TMO_b0454 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D TMO_1422 molybdopterin oxidoreductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] D TMO_2652 biotin sulfoxide reductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] D TMO_2867 emrA; secretion protein HlyD family protein K03543 emrA; membrane fusion protein, multidrug efflux system D TMO_2900 emrA; secretion protein HlyD K03543 emrA; membrane fusion protein, multidrug efflux system D TMO_1066 cyaD; type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D TMO_3519 RND efflux membrane fusion protein precursor K18306 mexH; membrane fusion protein, multidrug efflux system D TMO_2247 acrA; secretion protein HlyD K19595 gesA; membrane fusion protein, gold/copper resistance efflux system D TMO_c0601 putative HlyD-like secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_2667 bepD; multidrug-efflux system secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0126 mdtA; RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0590 secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_1164 Membrane-fusion protein K18990 vexE; membrane fusion protein, multidrug efflux system D TMO_c0025 bepF; multidrug efflux RND transporter, membrane fusion protein MexE K19586 oqxA; membrane fusion protein, multidrug efflux system D TMO_2359 macA; macrolide efflux protein MacA K13888 macA; membrane fusion protein, macrolide-specific efflux system D TMO_0957 macA; RND family efflux transporter MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D TMO_0508 crtK; TspO and MBR like protein K05770 TSPO; translocator protein D TMO_3082 cycK; cytochrome c biogenesis factor K02198 ccmF; cytochrome c-type biogenesis protein CcmF D TMO_1441 yhiD; MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D TMO_c0007 copD; putative copper resistance D transmembrane protein K07245 pcoD; copper resistance protein D D TMO_c0008 copC; copper resistance protein CopC K07156 copC; copper resistance protein C D TMO_b0224 MltA-interacting MipA family protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:tmo02044] D TMO_1910 bepC; TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein D TMO_1517 bepC; type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein D TMO_0961 aprD; ABC transporter, ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D TMO_1065 paxB; putative exotoxin translocation ATP-binding protein PaxB K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D TMO_1066 cyaD; type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D TMO_1064 TolC family type I secretion outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system D TMO_1917 pulE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D TMO_1918 hypothetical protein K02455 gspF; general secretion pathway protein F D TMO_1397 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D TMO_1922 outD; type II and III secretion system protein K12282 mshL; MSHA biogenesis protein MshL D TMO_3098 hypothetical protein K02221 yggT; YggT family protein D TMO_1764 ComEC/Rec2-related protein K02238 comEC; competence protein ComEC D TMO_1240 flagellar biosynthesis pathway, component FlhA K02400 flhA; flagellar biosynthesis protein FlhA D TMO_1126 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D TMO_1119 ylqH; flagellar biosynthetic protein FlhB K04061 flhB2; flagellar biosynthesis protein D TMO_1246 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF D TMO_1244 flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH D TMO_1229 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TMO_1243 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TMO_1117 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D TMO_1116 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D TMO_1124 yscS; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D TMO_1125 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR D TMO_3339 traG; TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D TMO_2197 traG; TRAG protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D TMO_c0095 cobyrinic acid a,c-diamide synthase K12055 K12055; chromosome partitioning related protein ParA D TMO_c0026 relaxase K12070 traI; conjugal transfer pilus assembly protein TraI D TMO_c0054 hypothetical protein K12071 traD; conjugal transfer pilus assembly protein TraD D TMO_2195 trbB; conjugal transfer protein trbB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8] D TMO_2194 conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC D TMO_2193 type IV secretory pathway VirB3 family protein K20529 trbD; type IV secretion system protein TrbD D TMO_2192 trbE; conjugal transfer ATPase TrbE K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8] D TMO_2189 trbF; conjugal transfer protein K20531 trbF; type IV secretion system protein TrbF D TMO_2188 trbG; P-type conjugative transfer protein TrbG K20532 trbG; type IV secretion system protein TrbG D TMO_2187 trbI; conjugation TrbI family protein K20533 trbI; type IV secretion system protein TrbI D TMO_2191 P-type conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ D TMO_2190 trbL; P-type conjugative transfer protein TrbL K07344 trbL; type IV secretion system protein TrbL D TMO_0386 outer membrane autotransporter barrel domain-containing protein K12685 ssp; subtilase-type serine protease [EC:3.4.21.-] D TMO_a0077 hypothetical protein K11891 impL; type VI secretion system protein ImpL D TMO_a0078 hypothetical protein K11892 impK; type VI secretion system protein ImpK D TMO_a0079 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D TMO_a0083 type VI secretion system protein ImpH K11895 impH; type VI secretion system protein ImpH D TMO_a0084 type VI secretion system protein ImpG K11896 impG; type VI secretion system protein ImpG D TMO_a0085 type VI secretion system protein ImpF K11897 impF; type VI secretion system protein ImpF D TMO_a0088 type VI secretion system protein ImpC K11900 impC; type VI secretion system protein ImpC D TMO_a0089 type VI secretion protein K11901 impB; type VI secretion system protein ImpB D TMO_a0090 impA-related N-terminal protein K11902 impA; type VI secretion system protein ImpA D TMO_a0092 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D TMO_a0068 vgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG D TMO_a0095 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG D TMO_a0080 type VI secretion lipoprotein, VC_A0113 family K11906 vasD; type VI secretion system protein VasD D TMO_a0082 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D TMO_a0076 hypothetical protein K11890 impM; type VI secretion system protein ImpM D TMO_a0086 type VI secretion system protein ImpE K11898 impE; type VI secretion system protein ImpE D TMO_a0087 type VI secretion system protein ImpC K11899 impD; type VI secretion system protein ImpD D TMO_a0073 ppkA-related protein K11912 ppkA; serine/threonine-protein kinase PpkA [EC:2.7.11.1] D TMO_a0081 FHA domain-containing protein K11913 fha1; type VI secretion system protein D TMO_a0075 prpC; Ser/Thr protein phosphatase K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16] D TMO_0353 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TMO_3396 secB; preprotein translocase subunit SecB K03071 secB; preprotein translocase subunit SecB D TMO_1547 secD; Preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD D TMO_c0594 secD; protein-export membrane protein SECD K12257 secDF; SecD/SecF fusion protein D TMO_2646 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D TMO_1548 secF; Preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF D TMO_1749 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TMO_2612 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D TMO_3247 signal recognition particle, subunit SRP54 K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TMO_0166 ftsY; Signal recognition particle GTPase K03110 ftsY; fused signal recognition particle receptor D TMO_1546 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D TMO_2712 oxaA; 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TMO_1536 tatA; Sec-independent protein translocase protein tatA/E-like protein K03116 tatA; sec-independent protein translocase protein TatA D TMO_1537 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D TMO_1538 tatC; sec-independent protein translocase protein K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:tmo02042] D TMO_1531 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family D TMO_0343 yfjD; Mg2+ and Co2+ transporter CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:tmo02022] D TMO_3503 phoR; two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D TMO_3510 phoB; Response regulator K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D TMO_c0142 Signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D TMO_c0141 Response regulator receiver:Transcriptional regulatory protein, C-terminal protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D TMO_c0014 cusS; sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D TMO_c0013 cusR; two component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D TMO_0451 kdpD; two-component system, OmpR family, sensor histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D TMO_0452 kdpE; two-component system, response regulator K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D TMO_0372 histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D TMO_0370 tctD; two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD D TMO_2058 chvG; sensor histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D TMO_2059 chvI; transcriptional regulatory protein ChvI K14981 chvI; two-component system, OmpR family, response regulator ChvI D TMO_a0028 baeS; two component sensor histidine kinase, AdeS K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3] D TMO_a0029 putative transcriptional regulator ycf27 K18144 adeR; two-component system, OmpR family, response regulator AdeR D TMO_2357 cpxA; Sensor protein cpxA K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D TMO_0469 qseB; two-component transcriptional regulator FeuP, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D TMO_b0223 ompR; two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D TMO_2358 mtrA; Two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator D TMO_2650 cusR; Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator D TMO_1520 arcA; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator D TMO_1705 nitrogen regulation protein K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D TMO_1704 ntrC; two-component response regulator, nitrogen regulation response K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D TMO_1703 Nitrogen regulation protein, NtrY, Signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D TMO_1702 ntrX; response regulator containing CheY-like receiver K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D TMO_c0527 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D TMO_a0152 two-component sensor histidine kinase protein K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D TMO_a0153 dctD; two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D TMO_c0528 dctD; C4-dicarboxylate transport transcriptional regulatory protein dctD K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D TMO_1223 cheA; CheA Signal transduction histidine Kinases (STHK) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TMO_1103 cheY; Response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TMO_1225 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TMO_1226 cheB; chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TMO_c0561 sensor histidine kinase (non-motile and phage-resistance protein) K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D TMO_3174 divJ; putative non-motile and phage-resistance protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D TMO_1251 PAS/PAC sensor signal transduction histidine kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D TMO_2559 pleD; response regulator With diguanylate cyclase (GGDEF) domain protein K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D TMO_1630 pleD; response regulator/GGDEF domain protein K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D TMO_2560 divK; response regulator receiver protein K11443 divK; two-component system, cell cycle response regulator DivK D TMO_1127 cell cycle histidine kinase CckA K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D TMO_1228 ctrA; two-component response regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA D TMO_1241 flbD; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC D TMO_0023 regB; two-component sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D TMO_0024 regA; photosynthetic apparatus regulatory protein RegA K15012 regA; two-component system, response regulator RegA D TMO_b0370 two-component hybrid sensor and regulator K20975 K20975; two-component system, sensor histidine kinase [EC:2.7.13.3] D TMO_2145 nrtC; nitrate transporter K22067 nasS; two-component system, oxyanion-binding sensor D TMO_2739 signal transduction histidine kinase K20971 ladS; two-component system, sensor histidine kinase LadS D TMO_b0028 dhkJ; Signal transduction histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3] C 02035 Bacterial motility proteins [BR:tmo02035] D TMO_1223 cheA; CheA Signal transduction histidine Kinases (STHK) K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TMO_1224 cheW; Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW D TMO_1227 chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TMO_1226 cheB; chemotaxis-specific methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TMO_1103 cheY; Response regulator receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TMO_1225 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TMO_1104 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D TMO_1012 hypothetical protein K03414 cheZ; chemotaxis protein CheZ D TMO_3495 mcp3; methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_0214 mcp4; Pmethyl-accepting chemotaxis receptor/sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_0221 htr5; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_0229 chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_1557 Methyl-accepting chemotaxis protein signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1575 mcp2; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1632 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1634 pilJ; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_0581 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2137 mcp4; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_0749 bdlA; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_1270 bdlA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2494 mcp4; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2495 dcrA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2911 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_2912 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_a0193 dcrA; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_b0257 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0509 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0510 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0511 mcp3; methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D TMO_c0715 bdlA; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D TMO_1244 flagellar assembly protein H K02411 fliH; flagellar assembly protein FliH D TMO_1229 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TMO_1230 hypothetical protein K02413 fliJ; flagellar protein FliJ D TMO_1117 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D TMO_1116 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D TMO_1124 yscS; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D TMO_1125 fliR; flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR D TMO_1240 flagellar biosynthesis pathway, component FlhA K02400 flhA; flagellar biosynthesis protein FlhA D TMO_1126 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D TMO_1245 fliG; flagellar motor switch protein G K02410 fliG; flagellar motor switch protein FliG D TMO_1100 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D TMO_1243 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN D TMO_1246 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF D TMO_1091 flgI; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI D TMO_1096 flgA; flagellar basal body P-ring biosynthesis protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D TMO_1095 flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH D TMO_1099 fliL; flagellar basal body-associated protein K02415 fliL; flagellar protein FliL D TMO_1123 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D TMO_1121 flgB; flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D TMO_1122 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D TMO_1249 flgD; flagellar basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D TMO_1098 flgF; flagellar basal-body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D TMO_1097 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D TMO_1248 flgE; Flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE D TMO_1088 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1 D TMO_1087 flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D TMO_1085 fliB; Lysine-N-methylase K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D TMO_1077 flagellin K02406 fliC; flagellin D TMO_1078 flagellin domain protein K02406 fliC; flagellin D TMO_1075 fliD; flagellar hook-associated protein 2 (FliD, filament cap protein) precursor K02407 fliD; flagellar hook-associated protein 2 D TMO_1074 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D TMO_1242 pomA; chemotaxis protein K02556 motA; chemotaxis protein MotA D TMO_2876 motA; flagellar motor protein MotA K02556 motA; chemotaxis protein MotA D TMO_1106 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D TMO_0875 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D TMO_2875 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D TMO_1241 flbD; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10943 flrC; two-component system, response regulator FlrC D TMO_1086 fliW; Flagellar assembly factor fliW K13626 fliW; flagellar assembly factor FliW D TMO_1076 flagellar protein FlaG K06603 flaG; flagellar protein FlaG D TMO_1239 FlhF K02404 flhF; flagellar biosynthesis protein FlhF D TMO_1238 ylxH; FleN K04562 flhG; flagellar biosynthesis protein FlhG D TMO_1397 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tmo04812] D TMO_0761 mreB; rod shape-determining protein MreB-related protein K03569 mreB; rod shape-determining protein MreB and related proteins D TMO_c0235 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TMO_c0236 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D TMO_0574 chromosome partitioning protein K03496 parA; chromosome partitioning protein D TMO_3418 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D TMO_2203 putative partition protein K03496 parA; chromosome partitioning protein D TMO_2339 cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D TMO_a0142 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D TMO_a0374 parA; partition protein ParA K03496 parA; chromosome partitioning protein D TMO_b0586 sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein D TMO_3419 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_2225 yubM; ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_b0587 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TMO_c0023 yubM; ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tmo04147] D TMO_3058 htpG; Chaperone protein htpG K04079 HSP90A; molecular chaperone HtpG D TMO_1746 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TMO_0884 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TMO_0883 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TMO_1896 ttuE; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D TMO_1801 glutamine amidotransferase, class II/dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D TMO_b0534 putative Peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D TMO_1485 peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D TMO_1696 groL; GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TMO_3474 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TMO_2886 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TMO_2465 gluconolactonase precursor K01053 gnl; gluconolactonase [EC:3.1.1.17] D TMO_1906 SMP-30/Gluconolaconase/LRE domain-containing protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D TMO_1438 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D TMO_2634 tuf1; Translation elongation factor Tu K02358 tuf; elongation factor Tu D TMO_2647 tuf1; Translation elongation factor Tu K02358 tuf; elongation factor Tu D TMO_3033 histidine triad protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D TMO_3365 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D TMO_2455 putative transmembrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D TMO_c0786 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0766 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_3063 Long-chain acyl-CoA synthetases (AMP-forming) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0167 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0109 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_b0366 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_2034 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_1434 lcfA; AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0226 Acyl-CoA synthetase/AMP-acid ligase II K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0689 lcfA; 4-coumarate-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0512 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_a0234 fadD; AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_c0484 acyl-CoA synthetase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TMO_0154 phaA; acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_2578 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0429 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_c0870 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_a0517 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_b0560 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D TMO_0170 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D TMO_2611 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D TMO_0990 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TMO_0127 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D TMO_3105 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D TMO_c0393 Cystathionine gamma-synthase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D TMO_c0375 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D TMO_2306 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D TMO_a0213 glycogen branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D TMO_0444 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D TMO_d0038 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D TMO_0291 puuA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_1993 glnA; L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D TMO_1616 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D TMO_c0718 vllY; 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D TMO_3164 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D TMO_0919 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D TMO_3120 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D TMO_1714 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_3004 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_b0193 lpdV; dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D TMO_0124 etfA; electron transfer flavoprotein alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D TMO_1750 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:tmo02048] D TMO_c0384 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D TMO_c0517 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D TMO_c0516 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D TMO_a0371 CRISPR-associated protein K09951 cas2; CRISPR-associated protein Cas2 D TMO_c0383 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D TMO_c0389 helicase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D TMO_c0385 putative crispr-associated protein cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D TMO_c0387 CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1 D TMO_c0386 CRISPR-associated Csh2 family protein K19118 csd2; CRISPR-associated protein Csd2 D TMO_c0388 CRISPR-associated protein Cas5 family K19119 cas5d; CRISPR-associated protein Cas5d D TMO_c0518 hypothetical protein K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-] D TMO_a0357 hsdR; type I restriction-modification system restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D TMO_a0358 putative restriction modification system specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D TMO_a0360 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D TMO_2747 ccrM; modification methylase K13581 ccrM; modification methylase [EC:2.1.1.72] D TMO_c0629 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D TMO_c0628 DNA methylase N-4/N-6 K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D TMO_1014 hypothetical protein K07448 mrr; restriction system protein D TMO_b0231 transcriptional regulator/antitoxin, MazE K07172 mazE; antitoxin MazE D TMO_c0342 putative regulator PrlF K19156 prlF; antitoxin PrlF D TMO_b0168 putative transcriptional regulator, AbrB family K19156 prlF; antitoxin PrlF D TMO_a0593 dinJ; addiction module antitoxin K07473 dinJ; DNA-damage-inducible protein J D TMO_0947 addiction module antitoxin, RelB/DinJ family K07473 dinJ; DNA-damage-inducible protein J D TMO_b0154 dinJ; addiction module antitoxin K07473 dinJ; DNA-damage-inducible protein J D TMO_a0598 HipA-like protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D TMO_3483 hipA; HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D TMO_3484 hypothetical protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D TMO_c0664 HTH-type transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D TMO_2961 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4 D TMO_b0298 plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4 D TMO_a0592 addiction module antitoxin K19092 parE1_3_4; toxin ParE1/3/4 D TMO_a0005 hypothetical protein K19092 parE1_3_4; toxin ParE1/3/4 D TMO_2107 plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4 D TMO_a0116 plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4 D TMO_b0247 addiction module antitoxin K19092 parE1_3_4; toxin ParE1/3/4 D TMO_a0240 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4 D TMO_b0155 addiction module toxin, RelE/StbE family K19092 parE1_3_4; toxin ParE1/3/4 D TMO_a0208 putative addiction module antidote protein, CopG/Arc/MetJ family K07746 parD1_3_4; antitoxin ParD1/3/4 D TMO_0871 putative addiction module antidote protein, CopG/Arc/MetJ family K07746 parD1_3_4; antitoxin ParD1/3/4 D TMO_2106 transcription regulator K07746 parD1_3_4; antitoxin ParD1/3/4 D TMO_2962 addiction module antidote protein, CC2985 family K07746 parD1_3_4; antitoxin ParD1/3/4 D TMO_a0004 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 D TMO_b0246 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 D TMO_b0297 transcriptional regulator K07746 parD1_3_4; antitoxin ParD1/3/4 D TMO_b0531 putative transcriptional regulator K07746 parD1_3_4; antitoxin ParD1/3/4 D TMO_c0458 putative addiction module antidote protein, CopG/Arc/MetJ family K07746 parD1_3_4; antitoxin ParD1/3/4 D TMO_0788 transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D TMO_c0787 Helix-turn-helix motif protein K21498 higA-1; antitoxin HigA-1 D TMO_1670 vapI; XRE family plasmid maintenance system antidote protein K21498 higA-1; antitoxin HigA-1 D TMO_c0365 mqsR; Motility quorum-sensing regulator mqsR K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin D TMO_c0366 ygiT; transcriptional regulator, XRE family K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D TMO_c0712 PilT protein domain protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-] D TMO_c0177 SpoVT/AbrB domain-containing protein K18829 mvpT; antitoxin VapB D TMO_0562 virulence-associated protein VapB-like protein K18829 mvpT; antitoxin VapB D TMO_c0711 vagC; SpoVT/AbrB-like protein K18829 mvpT; antitoxin VapB D TMO_c0317 hypothetical protein K19686 vapC; ribonuclease VapC [EC:3.1.-.-] D TMO_0670 hypothetical protein K19686 vapC; ribonuclease VapC [EC:3.1.-.-] D TMO_c0318 hypothetical protein K19687 vapB; antitoxin VapB D TMO_a0203 PilT domain-containing protein K07062 fitB; toxin FitB [EC:3.1.-.-] D TMO_c0235 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TMO_0761 mreB; rod shape-determining protein MreB-related protein K03569 mreB; rod shape-determining protein MreB and related proteins D TMO_1604 parC; Gram negative topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D TMO_1996 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D TMO_1765 Glutamyl-tRNA synthetase, class Ic K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_2298 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TMO_1626 Succinate dehydrogenase assembly factor K09159 cptB; antitoxin CptB D TMO_c0665 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TMO_c0666 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:tmo04090] C 01504 Antimicrobial resistance genes [BR:tmo01504] D TMO_c0416 major facilitator transporter K08151 tetA; MFS transporter, DHA1 family, tetracycline resistance protein D TMO_b0065 Chloramphenicol acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D TMO_b0165 Beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6] D TMO_c0014 cusS; sensor histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D TMO_c0013 cusR; two component response regulator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D TMO_3524 ddpX; D-alanyl-D-alanine dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D TMO_3498 mprF; putative membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] D TMO_c0601 putative HlyD-like secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_2667 bepD; multidrug-efflux system secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0126 mdtA; RND family efflux transporter MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0590 secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TMO_c0600 cation/multidrug efflux pump protein K18138 acrB; multidrug efflux pump D TMO_c0127 AcrB/AcrD/AcrF family protein K18138 acrB; multidrug efflux pump D TMO_c0591 hydrophobic/amphiphilic exporter-1 K18138 acrB; multidrug efflux pump D TMO_2666 bepE; hydrophobe/amphiphile efflux-1 (HAE1) family protein K18138 acrB; multidrug efflux pump D TMO_2665 silC; RND efflux system outer membrane lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D TMO_2898 ydeS; TetR family transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor D TMO_1384 nolG; acriflavin resistance protein K18303 mexK; multidrug efflux pump D TMO_1756 hmrR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D TMO_2241 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D TMO_2247 acrA; secretion protein HlyD K19595 gesA; membrane fusion protein, gold/copper resistance efflux system D TMO_2246 bepE; hydrophobe/amphiphile efflux-1 (HAE1) family protein K19594 gesB; gold/copper resistance efflux pump D TMO_a0028 baeS; two component sensor histidine kinase, AdeS K18143 adeS; two-component system, OmpR family, sensor histidine kinase AdeS [EC:2.7.13.3] D TMO_a0029 putative transcriptional regulator ycf27 K18144 adeR; two-component system, OmpR family, response regulator AdeR D TMO_1910 bepC; TolC family type I secretion outer membrane protein K12340 tolC; outer membrane protein D TMO_1517 bepC; type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tmo00537] D TMO_1801 glutamine amidotransferase, class II/dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tmo03100] D TMO_r42 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TMO_r45 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TMO_rc08 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TMO_r41 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TMO_r35 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TMO_r44 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TMO_r03 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TMO_r21 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TMO_r16 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TMO_r23 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TMO_r20 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TMO_r17 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TMO_rc02 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TMO_r12 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TMO_r22 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TMO_r43 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TMO_r47 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TMO_r37 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TMO_r26 tRNA-His K14226 tRNA-His; tRNA His D TMO_r05 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TMO_r32 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TMO_rd02 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TMO_rc06 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D TMO_r25 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_r27 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_rc11 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_r40 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_rc12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TMO_r11 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TMO_r08 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rd06 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rc03 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_r29 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rd05 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rc01 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_rc09 tRNA-Met K14230 tRNA-Met; tRNA Met D TMO_r15 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TMO_r19 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TMO_rc10 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TMO_r34 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TMO_r10 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TMO_r18 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TMO_r02 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TMO_r46 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TMO_r13 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TMO_r01 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TMO_r14 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TMO_r39 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TMO_r36 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TMO_r38 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TMO_r28 tRNA-Val K14237 tRNA-Val; tRNA Val D TMO_r09 tRNA-Val K14237 tRNA-Val; tRNA Val D TMO_r24 tRNA-Val K14237 tRNA-Val; tRNA Val D TMO_r04 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_rd01 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_rc07 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_r33 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TMO_r06 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_r31 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_rc05 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_rd03 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TMO_r07 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_r30 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_rc04 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TMO_rd04 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D TMO_1135 3-hydroxyacyl-CoA dehydrogenase (hdb-1) K17735 lcdH; carnitine 3-dehydrogenase [EC:1.1.1.108] D TMO_1415 dkgB; oxidoreductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D TMO_c0891 acoA; Thiamine pyrophosphate-dependent dehydrogenase, E1 component alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D TMO_0554 acoA; Thiamine pyrophosphate-dependent dehydrogenase, E1 component alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D TMO_c0851 acoA; acetoin dehydrogenase complex, E1 component, alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D TMO_c0892 pdhB; putative pyruvate dehydrogenase E1 beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D TMO_0555 putative pyruvate dehydrogenase E1 beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D TMO_c0852 acoB; pyruvate dehydrogenase E1 component, beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D TMO_a0181 calB; aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] D TMO_a0483 gap3; glyceraldehyde-3-phosphate dehydrogenase, type I K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107] D TMO_1176 cutS; carbon monoxide dehydrogenase small chain K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D TMO_1174 cutM; carbon-monoxide dehydrogenase (acceptor) K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D TMO_0651 cutL; carbon-monoxide dehydrogenase (acceptor) K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D TMO_2155 coxL; carbon monoxide dehydrogenase large chain K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D TMO_1175 cutL; carbon monoxide dehydrogenase large chain K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D TMO_c0303 indolepyruvate ferredoxin oxidoreductase, alpha subunit K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D TMO_0546 iorA; indolepyruvate ferredoxin oxidoreductase subunit alpha/beta K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D TMO_b0591 fadH; NADH:flavin oxidoreductase/NADH oxidase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D TMO_c0871 yncB; oxidoreductase, zinc-binding dehydrogenase family K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-] D TMO_0015 CADD protein K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D TMO_3170 PqqC-like protein K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D TMO_3112 pqqC; pyrroloquinoline quinone biosynthesis protein PqqC K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11] D TMO_0472 iorA; putative aldehyde dehydrogenase subunit III K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D TMO_c0437 Membrane-bound aldehyde dehydrogenase iron-sulfur protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D TMO_b0194 isoquinoline 1-oxidoreductase subunit alpha K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D TMO_0471 iorB; Twin-arginine translocation pathway signal K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D TMO_c0436 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D TMO_b0195 iorB; isoquinoline 1-oxidoreductase, beta subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D TMO_2672 Dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D TMO_2075 FAD dependent oxidoreductase K18208 RNLS; renalase [EC:1.6.3.5] D TMO_1890 oxidoreductase, zinc-binding dehydrogenase family K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D TMO_0648 oxidoreductase, zinc-binding dehydrogenase family K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D TMO_1957 Alcohol dehydrogenase zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D TMO_2897 Alcohol dehydrogenase zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D TMO_0541 alcohol dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D TMO_3409 NADPH:quinone reductase and related Zn-dependent oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D TMO_0840 2-nitropropane dioxygenase K23948 E1.6.5.9; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D TMO_a0397 namA; NADH:flavin oxidoreductase/NADH oxidase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1] D TMO_0393 (Acyl-carrier protein) phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D TMO_1795 azoR; FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D TMO_c0424 acetyl-CoA carboxylase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D TMO_2124 yfcG; glutathione S-transferase-like protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D TMO_1145 yfcG; Glutathione S-transferase domain protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D TMO_1499 glutathione S-transferase domain-containing protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D TMO_2122 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D TMO_1144 yfcG; glutathione S-transferase domain-containing protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D TMO_3020 yqjG; putative glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D TMO_c0123 yedY; Sulfoxide reductase catalytic subunit yedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D TMO_a0009 cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17] D TMO_1256 ccpA; cytochrome c551 peroxidase precursor K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D TMO_3371 mauG; methylamine utilization protein K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D TMO_3352 putative haloperoxidase protein K00433 cpo; non-heme chloroperoxidase [EC:1.11.1.10] D TMO_c0686 bcp; Redoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D TMO_2424 osmC; OsmC-like protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D TMO_1569 organic hydroperoxide resistance protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D TMO_2499 ahpD; AhpD, alkyl hydroperoxide reductase D K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D TMO_2498 ahpC; alkylhydroperoxide reductase C K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D TMO_b0149 Pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D TMO_1350 pirin K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D TMO_b0515 dke1; acetylacetone-cleaving enzyme K20148 dke1; acetylacetone-cleaving enzyme [EC:1.13.11.50] D TMO_3256 oxidoreductase domain protein K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D TMO_2016 hmp; oxidoreductase FAD/NAD(P)-binding subunit K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D TMO_b0327 pvdA; L-ornithine 5-monooxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D TMO_a0133 flavin-dependent oxidoreductase K20938 ladA; long-chain alkane monooxygenase [EC:1.14.14.28] D TMO_c0073 merA; mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1] D TMO_1551 hypothetical protein K21677 hpnE; hydroxysqualene dehydroxylase [EC:1.17.8.1] D TMO_2556 Oxidoreductase FAD-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D TMO_3462 arsC; putative arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D TMO_c0019 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D TMO_0461 arsC; protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D TMO_c0017 arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D TMO_3110 pqqE; pyrroloquinoline quinone biosynthesis protein PqqE K06139 pqqE; PqqA peptide cyclase [EC:1.21.98.4] D TMO_1911 pcm2; protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D TMO_1952 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) family K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D TMO_1541 Protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D TMO_1872 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D TMO_c0805 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D TMO_2660 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D TMO_a0391 trans-aconitate methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D TMO_a0487 macrocin-O-methyltransferase K05303 K05303; O-methyltransferase [EC:2.1.1.-] D TMO_3535 Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D TMO_3530 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270] D TMO_c0513 yhbS; GCN5-related N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D TMO_c0022 yhbS; acetyltransferase, gnat family K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D TMO_0768 yjaB; GCN5-related N-acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-] D TMO_0228 putative acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D TMO_c0688 yncA; GCN5-related N-acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D TMO_c0737 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D TMO_1611 Arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D TMO_3529 hemolysin K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30] D TMO_0314 Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D TMO_3404 phosphotransferase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D TMO_c0685 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D TMO_b0420 yddV; diguanylate cyclase K13069 E2.7.7.65; diguanylate cyclase [EC:2.7.7.65] D TMO_c0144 yhcK; diguanylate cyclase K18967 dge1; diguanylate cyclase [EC:2.7.7.65] D TMO_2918 putative lactonase precursor K02352 drp35; lactonase [EC:3.1.1.-] D TMO_b0280 thioesterase-like protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29] D TMO_0025 yneP; thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D TMO_3166 ybgC; Acyl-CoA thioester hydrolase ybgC K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D TMO_0901 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D TMO_0549 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D TMO_3318 putative phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D TMO_c0877 hypothetical protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D TMO_b0029 rpfG; two component system, transcriptional regulatory protein K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D TMO_1680 ycfH; TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D TMO_1082 celY; cellulase K20542 bcsZ; endoglucanase [EC:3.2.1.4] D TMO_0584 dacF; D-alanyl-D-alanine carboxypeptidase K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D TMO_c0251 ampD; negative regulator of AmpC, AmpD K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TMO_2698 N-formylmethionyl-tRNA deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D TMO_b0574 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D TMO_b0330 pvdQ; acyl-homoserine lactone acylase K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97] D TMO_2841 cda1; polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D TMO_0360 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D TMO_c0500 agmatinase K18459 gpuA; guanidinopropionase [EC:3.5.3.17] D TMO_b0390 hypothetical protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D TMO_0596 hypothetical protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D TMO_1988 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D TMO_2444 ygeX; diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D TMO_1883 amino-acid dehydratase protein K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16] D TMO_1579 Hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D TMO_1361 hrpB; HrpA-like helicase K03579 hrpB; ATP-dependent helicase HrpB [EC:5.6.2.6] D TMO_d0023 menE; AMP-dependent synthetase and ligase K12508 fcs; feruloyl-CoA synthase [EC:6.2.1.34] D TMO_b0524 caiC; AMP-dependent synthetase and ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D TMO_b0188 caiC; AMP-dependent synthetase and ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D TMO_b0496 caiC; AMP-dependent synthetase and ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D TMO_1429 acetone carboxylase alpha subunit K10854 acxB; acetone carboxylase, alpha subunit [EC:6.4.1.6] D TMO_1430 hyuA; Acetone carboxylase beta subunit AcxA K10855 acxA; acetone carboxylase, beta subunit [EC:6.4.1.6] D TMO_1428 acetone carboxylase, gamma subunit K10856 acxC; acetone carboxylase, gamma subunit [EC:6.4.1.6] D TMO_c0919 fixI; cation transport ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D TMO_c0675 zntA; heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D TMO_c0083 cadA; heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D TMO_2168 sugar fermentation stimulation protein A K06206 sfsA; sugar fermentation stimulation protein A D TMO_1148 torT; ABC transporter substrate-binding protein K11930 torT; periplasmic protein TorT D TMO_3384 putative Fe-S oxidoreductase K18928 lldE; L-lactate dehydrogenase complex protein LldE D TMO_3383 lutB; Iron-sulfur cluster binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D TMO_3382 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D TMO_1022 fdhD; formate dehydrogenase accessory protein K02379 fdhD; FdhD protein D TMO_c0588 fdxB; 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D TMO_3055 fdxA; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K05524 fdxA; ferredoxin D TMO_0109 nifU; NifU family SUF system FeS assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins D TMO_0123 etfB; Electron transfer flavoprotein, beta subunit K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism D TMO_c0165 aidB; putative acyl-CoA dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D TMO_3454 hypothetical protein K06203 cysZ; CysZ protein D TMO_3285 alanine racemase domain-containing protein K06997 yggS; PLP dependent protein D TMO_3429 putative enzyme with PLP-binding domain alanine racemase K06997 yggS; PLP dependent protein D TMO_2161 hypothetical protein K21700 bauB; beta-alanine degradation protein BauB C 99986 Glycan metabolism D TMO_3119 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D TMO_1083 cellulose synthase subunit B K20541 bcsB; cellulose synthase operon protein B C 99987 Cofactor metabolism D TMO_2760 cobW; cobalamin synthesis protein cobW K02234 cobW; cobalamin biosynthesis protein CobW D TMO_0082 HemY protein K02498 hemY; HemY protein D TMO_3559 ubiB; protein kinase K03688 ubiB; ubiquinone biosynthesis protein D TMO_2144 mobB; molybdopterin-guanine dinucleotide biosynthesis MobB region K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein D TMO_0835 Ubiquinone biosynthesis protein K18587 COQ9; ubiquinone biosynthesis protein COQ9 D TMO_1712 oligoketide cyclase/lipid transport protein K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism C 99999 Others D TMO_c0328 hypothetical protein K15977 K15977; putative oxidoreductase D TMO_3294 DoxD-like family protein K15977 K15977; putative oxidoreductase D TMO_b0204 DoxX family protein K15977 K15977; putative oxidoreductase D TMO_0517 Phospholipase/Carboxylesterase K06999 K06999; phospholipase/carboxylesterase D TMO_3312 phospholipase/carboxylesterase K06999 K06999; phospholipase/carboxylesterase D TMO_3313 phospholipase/carboxylesterase K06999 K06999; phospholipase/carboxylesterase D TMO_3325 yfiQ; CoA-binding domain protein K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D TMO_1638 cold-shock DNA-binding domain-containing protein K03704 cspA; cold shock protein D TMO_1639 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein D TMO_a0309 pyridoxal phosphate biosynthetic protein PdxJ K03704 cspA; cold shock protein D TMO_a0310 cold-shock DNA-binding domain-containing protein K03704 cspA; cold shock protein D TMO_3138 glnB; nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 C 99974 Translation D TMO_2158 yhiH; ABC transporter permease ATP-binding protein K13926 rbbA; ribosome-dependent ATPase D TMO_3481 yhiH; ABC transporter, ATP binding/permease protein K13926 rbbA; ribosome-dependent ATPase D TMO_2064 putative mRNA processing factor K07577 K07577; putative mRNA 3-end processing factor C 99975 Protein processing D TMO_0587 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D TMO_1984 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) K03545 tig; trigger factor D TMO_c0284 yedZ; Ferric reductase domain protein transmembrane component domain protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D TMO_1731 ureE; urease accessory protein K03187 ureE; urease accessory protein D TMO_1732 ureF; Urease accessory protein UreF K03188 ureF; urease accessory protein D TMO_1733 ureG; urease accessory protein K03189 ureG; urease accessory protein D TMO_1727 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein D TMO_2771 hupE; HupE/UreJ protein K03192 ureJ; urease accessory protein D TMO_1585 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D TMO_3446 yifB; putative ATPase with chaperone activity K07391 comM; magnesium chelatase family protein D TMO_c0859 prolyl 4-hydroxylase, alpha subunit K07394 K07394; SM-20-related protein D TMO_1523 putative proteasome-type protease K07395 K07395; putative proteasome-type protease D TMO_0569 OsmC family protein K07397 yhfA; putative redox protein D TMO_2117 yhfA; redox protein K07397 yhfA; putative redox protein D TMO_b0256 OsmC family protein K07397 yhfA; putative redox protein D TMO_1170 pucA; xanthine dehydrogenase accessory factor K07402 xdhC; xanthine dehydrogenase accessory factor D TMO_0548 yncG; glutathione S-transferase domain-containing protein K11208 yncG; GST-like protein C 99976 Replication and repair D TMO_3045 hypothetical protein K07454 K07454; putative restriction endonuclease D TMO_c0035 DNA repair protein RadC K03630 radC; DNA repair protein RadC D TMO_2170 DNA repair protein K03630 radC; DNA repair protein RadC D TMO_2697 rmuC; DNA recombination protein rmuC-like protein K09760 rmuC; DNA recombination protein RmuC D TMO_a0020 recF; DNA replication and repair protein recF K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D TMO_b0245 putative ATP-dependent endonuclease of the OLD family protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D TMO_3466 hypothetical protein K07460 yraN; putative endonuclease D TMO_2551 putative Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 smf; DNA processing protein D TMO_2605 rarA; recombination factor protein RarA K07478 ycaJ; putative ATPase D TMO_1672 transposase, mutator type K07493 K07493; putative transposase D TMO_a0351 transposase, mutator type K07493 K07493; putative transposase D TMO_2404 Transposase-like Mu K07497 K07497; putative transposase D TMO_a0361 integrase, catalytic region K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D TMO_2687 transcriptional regulator K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D TMO_2068 Major facilitator superfamily MFS_1 K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D TMO_3146 alsT; putative amino acid carrier transmembrane protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TMO_0887 glnT; putative amino acid carrier protein(sodium/alanine symporter) K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TMO_2542 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TMO_c0376 pucI; cytosine/purines, uracil, thiamine, allantoin transporter K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D TMO_1375 NupC family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family C 99978 Cell growth D TMO_0165 ispZ; intracellular septation protein K06190 ispZ; intracellular septation protein D TMO_1048 iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D TMO_a0125 Regulator of cell morphogenesis and NO signaling K07322 ytfE; regulator of cell morphogenesis and NO signaling D TMO_b0316 SpoOM family protein K06377 spo0M; sporulation-control protein D TMO_1931 SpoVR family protein K06415 spoVR; stage V sporulation protein R D TMO_2975 yibP; Peptidase M23B K22719 envC; murein hydrolase activator C 99993 Cell motility D TMO_1660 TfoX domain-containing protein K07343 tfoX; DNA transformation protein and related proteins C 99995 Signaling proteins D TMO_3452 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein D TMO_3157 chrR; Anti-sigma factor ChrR K07167 chrR; putative transcriptional regulator D TMO_c0265 putative transmembrane protein K07168 K07168; CBS domain-containing membrane protein D TMO_3532 ybeZ; phosphate starvation-inducible protein PhoH-related protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D TMO_1933 prkA; PrkA serine kinase K07180 prkA; serine protein kinase D TMO_0815 putative signal-transduction protein containing cAMP-binding and CBS domains K07182 K07182; CBS domain-containing protein C 99992 Structural proteins D TMO_0823 Surface lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D TMO_0781 Outer membrane lipoprotein-like protein K06077 slyB; outer membrane lipoprotein SlyB D TMO_1773 outer membrane protein K06142 hlpA; outer membrane protein D TMO_0439 outer membrane protein W precursor K07275 ompW; outer membrane protein D TMO_0408 asmA; AsmA protein K07289 asmA; AsmA protein D TMO_2159 yhiI; HlyD family secretion protein K01993 ABC-2.TX; HlyD family secretion protein D TMO_3480 yhiI; HlyD family secretion protein K01993 ABC-2.TX; HlyD family secretion protein D TMO_2999 auxiliary transport protein, MFP family K02005 ABC.CD.TX; HlyD family secretion protein D TMO_b0067 nccB; RND family efflux transporter MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D TMO_1521 hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB D TMO_3081 ccmE; CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D TMO_3084 ccmH; protein involved in biosynthesis of c-type cytochromes K02200 ccmH; cytochrome c-type biogenesis protein CcmH D TMO_3085 cycH; cytochrome c-type biogenesis protein CycH K02200 ccmH; cytochrome c-type biogenesis protein CcmH D TMO_0377 hypothetical protein K15539 rodZ; cytoskeleton protein RodZ C 99994 Others D TMO_3509 phoU; Phosphate transport system protein PhoU K02039 phoU; phosphate transport system protein D TMO_0621 hypothetical protein K02192 bfd; bacterioferritin-associated ferredoxin D TMO_2871 membrane protein K05794 terC; tellurite resistance protein TerC D TMO_1807 divalent cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D TMO_2098 phnK; phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein D TMO_3333 apaG; ApaG K06195 apaG; ApaG protein D TMO_c0206 putative flavoprotein involved in K+ transport K07222 K07222; putative flavoprotein involved in K+ transport D TMO_1332 hmuS; hemin transport protein K07225 hmuS; putative hemin transport protein D TMO_1365 insulin-cleaving metalloproteinase outer membrane protein K07231 K07231; putative iron-regulated protein D TMO_2234 copB; copper resistance B precursor K07233 pcoB; copper resistance protein B D TMO_c0011 copB; copper resistance protein B K07233 pcoB; copper resistance protein B D TMO_b0461 NnrS family protein K07234 K07234; uncharacterized protein involved in response to NO B B 09194 Poorly characterized C 99996 General function prediction only D TMO_1878 cvpA; CvpA family protein K03558 cvpA; membrane protein required for colicin V production D TMO_2056 hypothetical protein K03796 bax; Bax protein D TMO_0819 caiE; phenylacetic acid degradation protein PaaY K02617 paaY; phenylacetic acid degradation protein D TMO_3113 pqqB; coenzyme PQQ biosynthesis protein B K06136 pqqB; pyrroloquinoline quinone biosynthesis protein B D TMO_3111 coenzyme PQQ synthesis D K06138 pqqD; pyrroloquinoline quinone biosynthesis protein D D TMO_c0145 csaA; chaperonin csaA K06878 K06878; tRNA-binding protein D TMO_0458 globin K06886 glbN; hemoglobin D TMO_2764 yjbI; protozoan/cyanobacterial globin family protein K06886 glbN; hemoglobin D TMO_1888 alpha/beta fold family hydrolase K07001 K07001; NTE family protein D TMO_2112 patatin K07001 K07001; NTE family protein D TMO_2707 putative hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D TMO_0105 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D TMO_0107 FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D TMO_0985 YihY family protein K07058 K07058; membrane protein D TMO_d0070 ribonuclease BN K07058 K07058; membrane protein D TMO_3395 ytzA; FxsA K07113 fxsA; UPF0716 protein FxsA D TMO_0567 cysteine desulfuration protein SufE K02426 sufE; cysteine desulfuration protein SufE D TMO_0733 glyoxalase family protein K04750 phnB; PhnB protein D TMO_c0338 NADPH-dependent FMN reductase K11811 arsH; arsenical resistance protein ArsH D TMO_b0308 putative iron reductase K13255 fhuF; ferric iron reductase protein FhuF D TMO_b0328 fhuF; ferric iron reductase protein K13255 fhuF; ferric iron reductase protein FhuF D TMO_b0218 fhuF; ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF D TMO_a0330 Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein K02351 K02351; putative membrane protein D TMO_c0292 LemA family protein K03744 lemA; LemA protein D TMO_c0291 creA; CreA family protein K05805 creA; CreA protein D TMO_1580 SprT protein K02742 sprT; SprT protein D TMO_1667 putative membrane protein K08987 K08987; putative membrane protein D TMO_c0297 yjfL; inner membrane protein YjfL K08989 K08989; putative membrane protein D TMO_c0736 membrane protein K08990 ycjF; putative membrane protein D TMO_a0041 hypothetical protein K08995 K08995; putative membrane protein D TMO_b0602 hypothetical protein K11312 K11312; cupin 2 domain-containing protein D TMO_0724 phnA; putative polybetahydroxybutyrate synthesis PhnA protein K06193 phnA; protein PhnA C 99997 Function unknown D TMO_1806 HD superfamily metal-dependent phosphohydrolase K06885 K06885; uncharacterized protein D TMO_3412 hypothetical protein K06888 K06888; uncharacterized protein D TMO_c0700 alpha/beta hydrolase fold protein K06889 K06889; uncharacterized protein D TMO_1688 hypothetical protein K06890 K06890; uncharacterized protein D TMO_3117 hypothetical protein K06890 K06890; uncharacterized protein D TMO_a0290 hypothetical protein K06893 K06893; uncharacterized protein D TMO_b0014 Baseplate assembly protein W K06903 W; Bacteriophage baseplate protein W D TMO_b0002 tail protein D K06905 D; Bacteriophage probable baseplate hub protein D TMO_b0008 phage tail sheath protein K06907 FI; Bacteriophage tail sheath protein D TMO_b0007 bacteriophage protein-like protein K06908 FII; Bacteriophage tail tube protein D TMO_c0735 hypothetical protein K06918 K06918; uncharacterized protein D TMO_1545 hypothetical protein K06923 K06923; uncharacterized protein D TMO_1792 yccU; O-acetylhomoserine/O-acetylserine sulfhydrylase K06929 K06929; uncharacterized protein D TMO_1217 YbaK/prolyl-tRNA synthetase associated region K06938 K06938; uncharacterized protein D TMO_2062 hypothetical protein K06953 K06953; uncharacterized protein D TMO_2658 amine oxidase K06954 K06954; uncharacterized protein D TMO_1423 hypothetical protein K06987 K06987; uncharacterized protein D TMO_b0488 glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein K06991 K06991; uncharacterized protein D TMO_c0327 hypothetical protein K06995 K06995; uncharacterized protein D TMO_0299 pyridoxamine 5'-phosphate oxidase family protein K07006 K07006; uncharacterized protein D TMO_c0189 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein K07006 K07006; uncharacterized protein D TMO_a0184 putative pyridoxine 5'-phosphate oxidase K07006 K07006; uncharacterized protein D TMO_c0101 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding protein K07006 K07006; uncharacterized protein D TMO_1070 hypothetical protein K07006 K07006; uncharacterized protein D TMO_1072 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein K07006 K07006; uncharacterized protein D TMO_c0669 hydrolase of the alpha/beta superfamily K07018 K07018; uncharacterized protein D TMO_0563 hydrolase-like protein of the alpha/beta-hydrolase fold family K07020 K07020; uncharacterized protein D TMO_a0468 hypothetical protein K07028 K07028; uncharacterized protein D TMO_0012 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase K07045 K07045; uncharacterized protein D TMO_2457 hypothetical protein K07064 K07064; uncharacterized protein D TMO_0399 TRAP transporter solute receptor TAXI family protein K07080 K07080; uncharacterized protein D TMO_c0672 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D TMO_2817 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D TMO_c0564 TRAP transporter solute receptor TAXI family protein K07080 K07080; uncharacterized protein D TMO_3181 TRAP transporter solute receptor TAXI family protein K07080 K07080; uncharacterized protein D TMO_a0154 TRAP transporter solute receptor, TAXI family protein K07080 K07080; uncharacterized protein D TMO_1425 31 kDa immunogenic protein K07080 K07080; uncharacterized protein D TMO_a0564 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D TMO_0090 transmembrane protein K07090 K07090; uncharacterized protein D TMO_1907 hypothetical protein K07090 K07090; uncharacterized protein D TMO_c0449 hypothetical protein K07090 K07090; uncharacterized protein D TMO_3513 putative permease K07090 K07090; uncharacterized protein D TMO_b0126 hypothetical protein K07090 K07090; uncharacterized protein D TMO_1483 transmembrane protein K07090 K07090; uncharacterized protein D TMO_2426 membrane protein K07090 K07090; uncharacterized protein D TMO_1458 hypothetical protein K07090 K07090; uncharacterized protein D TMO_b0202 putative membrane protein, DUF81 K07090 K07090; uncharacterized protein D TMO_0644 hypothetical protein K07093 K07093; uncharacterized protein D TMO_1260 YeeE/YedE family protein K07112 K07112; uncharacterized protein D TMO_1261 membrane protein K07112 K07112; uncharacterized protein D TMO_c0542 ywnB; Rrf2-linked NADH-flavin reductase K07118 K07118; uncharacterized protein D TMO_0962 yhjN; Putative ammonia monooxygenase K07120 K07120; uncharacterized protein D TMO_c0113 abrB; membrane protein AbrB duplication K07120 K07120; uncharacterized protein D TMO_c0203 selenophosphate synthetase-related protein K07123 K07123; uncharacterized protein D TMO_0223 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein D TMO_2519 TPR repeat, SEL1 subfamily K07126 K07126; uncharacterized protein D TMO_0383 MOSC domain containing protein K07140 K07140; MOSC domain-containing protein D TMO_0727 yxaH; putative membrane protein K07148 K07148; uncharacterized protein D TMO_3134 lonD; Peptidase S16, lon-like protein K07157 K07157; uncharacterized protein D TMO_1172 VWA containing CoxE family protein K07161 K07161; uncharacterized protein D TMO_2713 hypothetical protein K08998 K08998; uncharacterized protein D TMO_1500 hypothetical protein K09003 K09003; uncharacterized protein D TMO_2470 hypothetical protein K09005 K09005; uncharacterized protein D TMO_c0108 GatB/Yqey domain superfamily K09117 K09117; uncharacterized protein D TMO_3099 hypothetical protein K09131 K09131; uncharacterized protein D TMO_0550 hypothetical protein K09160 K09160; uncharacterized protein D TMO_3268 hypothetical protein K09190 K09190; uncharacterized protein D TMO_3199 carbon monoxide dehydrogenase subunit G K09386 K09386; uncharacterized protein D TMO_2140 hypothetical protein K09700 K09700; uncharacterized protein D TMO_2659 DUF1365 domain containing protein K09701 K09701; uncharacterized protein D TMO_1038 hypothetical protein K09705 K09705; uncharacterized protein D TMO_1490 GATS-like protein 1 K09707 K09707; uncharacterized protein D TMO_b0258 hypothetical protein K09768 K09768; uncharacterized protein D TMO_0092 yciI; YCII-related protein K09780 K09780; uncharacterized protein D TMO_2447 YciI family protein K09780 K09780; uncharacterized protein D TMO_1932 hypothetical protein K09786 K09786; uncharacterized protein D TMO_0254 ybaN; Inner membrane protein ybaN K09790 K09790; uncharacterized protein D TMO_3135 hypothetical protein K09791 K09791; uncharacterized protein D TMO_2286 hypothetical protein K09792 K09792; uncharacterized protein D TMO_c0926 hypothetical protein K09792 K09792; uncharacterized protein D TMO_3344 hypothetical protein K09792 K09792; uncharacterized protein D TMO_1360 hypothetical protein K09797 K09797; uncharacterized protein D TMO_1755 hypothetical protein K09798 K09798; uncharacterized protein D TMO_2977 hypothetical protein K09798 K09798; uncharacterized protein D TMO_c0578 hypothetical protein K09803 K09803; uncharacterized protein D TMO_0417 hypothetical protein K09822 K09822; uncharacterized protein D TMO_1008 zinc-binding protein K09862 K09862; uncharacterized protein D TMO_0592 hypothetical protein K09919 K09919; uncharacterized protein D TMO_2991 hypothetical protein K09921 K09921; uncharacterized protein D TMO_2917 hypothetical protein K09927 K09927; uncharacterized protein D TMO_c0330 hypothetical protein K09930 K09930; uncharacterized protein D TMO_1057 hypothetical protein K09930 K09930; uncharacterized protein D TMO_3370 hypothetical protein K09930 K09930; uncharacterized protein D TMO_d0062 hypothetical protein K09937 K09937; uncharacterized protein D TMO_1689 hypothetical protein K09945 K09945; uncharacterized protein D TMO_1368 twin-arginine translocation pathway signal K09947 K09947; uncharacterized protein D TMO_c0322 hypothetical protein K09948 K09948; uncharacterized protein D TMO_0730 hypothetical protein K09956 K09956; uncharacterized protein D TMO_1893 hypothetical protein K09956 K09956; uncharacterized protein D TMO_2923 hypothetical protein K09956 K09956; uncharacterized protein D TMO_b0034 hypothetical protein K09958 K09958; uncharacterized protein D TMO_a0545 hypothetical protein K09962 K09962; uncharacterized protein D TMO_0798 hypothetical protein K09965 K09965; uncharacterized protein D TMO_2800 hypothetical protein K09967 K09967; uncharacterized protein D TMO_2948 hypothetical protein K09975 K09975; uncharacterized protein D TMO_0623 hypothetical protein K09978 K09978; uncharacterized protein D TMO_3283 urease-associated protein K09984 K09984; uncharacterized protein D TMO_2449 hypothetical protein K09985 K09985; uncharacterized protein D TMO_c0163 hypothetical protein K09986 K09986; uncharacterized protein D TMO_0851 hypothetical protein K09987 K09987; uncharacterized protein D TMO_0954 hypothetical protein K09989 K09989; uncharacterized protein D TMO_1895 hypothetical protein K09990 K09990; uncharacterized protein D TMO_1909 hypothetical protein K09991 K09991; uncharacterized protein D TMO_c0115 nucleoside-diphosphate-sugar epimerase K07276 K07276; uncharacterized protein D TMO_1367 hypothetical protein K07338 K07338; uncharacterized protein D TMO_3541 hypothetical protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 24, 2024