+D GENES KO
#
KEGG Orthology (KO) - Thermosediminibacter oceani
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:toc00010]
D Toce_1809 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Toce_0846 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Toce_0870 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Toce_1875 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Toce_1810 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Toce_0360 fructose-bisphosphate aldolase; D-fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Toce_1852 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Toce_1855 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Toce_2092 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Toce_1851 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Toce_1850 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Toce_0871 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Toce_0928 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Toce_2028 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Toce_1430 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2139 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Toce_2138 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Toce_2141 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Toce_2140 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Toce_0834 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_1204 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_0835 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Toce_1203 2-oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Toce_1441 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Toce_0214 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D Toce_0825 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Toce_0101 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Toce_0345 6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D Toce_1700 glycoside hydrolase family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
C 00020 Citrate cycle (TCA cycle) [PATH:toc00020]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_0834 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_1204 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_0835 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Toce_1203 2-oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Toce_0836 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D Toce_1202 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D Toce_0833 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D Toce_1205 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D Toce_1836 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Toce_1826 fumarase alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Toce_1825 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Toce_0101 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Toce_2028 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Toce_1430 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Toce_2139 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Toce_2138 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Toce_2141 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Toce_2140 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00030 Pentose phosphate pathway [PATH:toc00030]
D Toce_0846 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Toce_1896 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Toce_1033 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Toce_1701 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Toce_1702 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Toce_1440 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Toce_2066 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Toce_1859 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D Toce_0594 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Toce_0825 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Toce_0049 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Toce_1897 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Toce_0383 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Toce_0295 Protein-N(pi)-phosphohistidine--sugarphosphotran sferase K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203]
D Toce_1900 PTS system sorbose subfamily IIB component K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203]
D Toce_1904 PTS system sorbose subfamily IIB component K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203]
D Toce_1903 phosphotransferase system PTS sorbose-specific IIC subunit K17466 dgaC; D-glucosaminate PTS system EIIC component
D Toce_1875 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Toce_1810 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Toce_0360 fructose-bisphosphate aldolase; D-fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Toce_0870 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:toc00040]
D Toce_0650 SAF domain protein K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7]
D Toce_0651 Altronate dehydratase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7]
D Toce_0502 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Toce_0480 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Toce_1033 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Toce_1874 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D Toce_1877 D-lyxose ketol-isomerase K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
D Toce_0293 Alcohol dehydrogenase GroES domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D Toce_1442 Alcohol dehydrogenase GroES domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D Toce_1443 Alcohol dehydrogenase GroES domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
C 00051 Fructose and mannose metabolism [PATH:toc00051]
D Toce_0846 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Toce_0825 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Toce_1798 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Toce_0510 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Toce_0511 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Toce_0870 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Toce_0055 D-mannitol 1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D Toce_0293 Alcohol dehydrogenase GroES domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D Toce_1442 Alcohol dehydrogenase GroES domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D Toce_1443 Alcohol dehydrogenase GroES domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D Toce_1875 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Toce_1810 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Toce_0360 fructose-bisphosphate aldolase; D-fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Toce_1852 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Toce_2066 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D Toce_1901 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_1905 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_0294 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_0564 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_1902 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component
D Toce_0300 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component
D Toce_1434 PTS system glucitol/sorbitol-specific IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D Toce_1435 Protein-N(pi)-phosphohistidine--sugarphosphotran sferase K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D Toce_1436 PTS system, glucitol/sorbitol-specific, IIC subunit K02783 srlA; glucitol/sorbitol PTS system EIIC component
C 00052 Galactose metabolism [PATH:toc00052]
D Toce_0568 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Toce_0480 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Toce_0825 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Toce_1809 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Toce_1446 putative PTS IIA-like nitrogen-regulatory protein PtsN K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D Toce_1444 PTS system D-arabitol-specific IIC component, Gat family (TC 4.A.5.1.2) K02775 gatC; galactitol PTS system EIIC component
D Toce_0870 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Toce_1741 alpha amylase catalytic region K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism
D Toce_0502 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:toc00500]
D Toce_0480 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Toce_0265 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Toce_0340 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Toce_1982 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Toce_0269 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Toce_0338 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Toce_1984 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Toce_0267 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D Toce_0339 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D Toce_1983 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D Toce_0345 6-phospho-beta-glucosidase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D Toce_1700 glycoside hydrolase family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D Toce_0491 glycosyl transferase family 2 K16150 K16150; glycogen synthase [EC:2.4.1.11]
D Toce_1741 alpha amylase catalytic region K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D Toce_1769 beta-phosphoglucomutase K01838 pgmB; beta-phosphoglucomutase [EC:5.4.2.6]
D Toce_1770 glycoside hydrolase family 65 central catalytic K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64]
D Toce_0825 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Toce_1809 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Toce_0846 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:toc00520]
D Toce_0326 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D Toce_1967 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Toce_1968 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Toce_0048 glucosamine-1-phosphate N-acetyltransferase; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Toce_0344 glucokinase regulatory-like protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D Toce_0343 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D Toce_0954 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Toce_2016 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Toce_0851 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Toce_2061 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Toce_1591 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D Toce_1590 oxidoreductase domain protein K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D Toce_1809 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Toce_0825 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Toce_0480 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Toce_0502 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Toce_0568 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Toce_1901 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_1905 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_0294 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_0564 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_1902 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component
D Toce_0300 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component
D Toce_0846 bifunctional phosphoglucose/phosphomannose isomerase K15916 pgi-pmi; glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8]
D Toce_1798 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Toce_0510 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Toce_0511 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
C 00620 Pyruvate metabolism [PATH:toc00620]
D Toce_2139 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Toce_2138 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Toce_2141 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Toce_2140 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Toce_0834 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_1204 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_0835 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Toce_1203 2-oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Toce_2028 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Toce_1430 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_0377 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D Toce_0214 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
D Toce_1048 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Toce_1047 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Toce_0555 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D Toce_0871 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Toce_0665 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Toce_1836 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Toce_1441 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Toce_1362 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Toce_2224 Protein of unknown function DUF2088 K22373 larA; lactate racemase [EC:5.1.2.1]
D Toce_1827 malic protein NAD-binding protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Toce_1193 Conserved carboxylase region K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D Toce_1828 glutaconyl-CoA decarboxylase beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Toce_1527 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Toce_1826 fumarase alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Toce_1825 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Toce_0101 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D Toce_0928 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:toc00630]
D Toce_1197 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Toce_1832 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Toce_1199 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D Toce_1833 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D Toce_1200 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Toce_1834 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Toce_2208 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Toce_2065 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_0814 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Toce_0646 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Toce_1897 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Toce_0243 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
C 00640 Propanoate metabolism [PATH:toc00640]
D Toce_1048 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Toce_1047 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Toce_0555 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2139 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Toce_2138 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Toce_2141 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Toce_2140 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Toce_1197 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Toce_1832 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Toce_1199 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D Toce_1833 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D Toce_1200 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Toce_1834 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Toce_1441 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Toce_0515 glycerol 2-dehydrogenase (NAD+) K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D Toce_0549 Glycerol dehydratase K01699 pduC; propanediol dehydratase large subunit [EC:4.2.1.28]
D Toce_0550 dehydratase medium subunit K13919 pduD; propanediol dehydratase medium subunit [EC:4.2.1.28]
D Toce_0551 dehydratase small subunit K13920 pduE; propanediol dehydratase small subunit [EC:4.2.1.28]
D Toce_0560 Aldehyde Dehydrogenase K13922 pduP; propionaldehyde dehydrogenase [EC:1.2.1.87]
C 00650 Butanoate metabolism [PATH:toc00650]
D Toce_0832 butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D Toce_1566 butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D Toce_0830 Phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D Toce_1565 phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D Toce_0377 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D Toce_1828 glutaconyl-CoA decarboxylase beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Toce_1527 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Toce_1194 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Toce_1829 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Toce_1195 sodium pump decarboxylase gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D Toce_1830 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D Toce_1836 succinate CoA transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Toce_2139 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Toce_2138 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Toce_2141 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Toce_2140 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Toce_0834 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_1204 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_0835 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Toce_1203 2-oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
C 00660 C5-Branched dibasic acid metabolism
C 00562 Inositol phosphate metabolism
D Toce_1852 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:toc00190]
D Toce_0241 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D Toce_0535 NADH dehydrogenase (ubiquinone) 24 kDa subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D Toce_0242 NADH dehydrogenase (quinone) K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D Toce_0536 NADH dehydrogenase (quinone) K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D Toce_0537 NAD(P)-dependent iron-only hydrogenase catalytic subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D Toce_1731 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D Toce_2021 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Toce_2019 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Toce_2020 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Toce_2022 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Toce_2018 ATPase, F1 complex, delta/epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Toce_2025 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Toce_2023 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Toce_2024 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Toce_1724 H+transporting two-sector ATPase alpha/beta subunit central region K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Toce_2042 ATP synthase, A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D Toce_1725 H+transporting two-sector ATPase alpha/beta subunit central region K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Toce_2041 H+transporting two-sector ATPase alpha/beta subunit central region K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D Toce_1719 H+transporting two-sector ATPase C (AC39) subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D Toce_2044 H+transporting two-sector ATPase C (AC39) subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D Toce_1726 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Toce_2040 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D Toce_1723 H+transporting two-sector ATPase E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D Toce_2045 H+transporting two-sector ATPase E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D Toce_1722 Vacuolar H+transporting two-sector ATPase F subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D Toce_2043 Vacuolar H+transporting two-sector ATPase F subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D Toce_2048 conserved hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D Toce_1720 V-type ATPase 116 kDa subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Toce_2047 V-type ATPase 116 kDa subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D Toce_1721 H+transporting two-sector ATPase C subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D Toce_2046 H+transporting two-sector ATPase C subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D Toce_1525 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes [PATH:toc00720]
D Toce_2139 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Toce_2138 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Toce_2141 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Toce_2140 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Toce_0928 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Toce_1826 fumarase alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D Toce_1825 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D Toce_0834 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_1204 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Toce_0835 thiamine pyrophosphate protein domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Toce_1203 2-oxoglutarate ferredoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Toce_0836 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain protein K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D Toce_1202 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D Toce_0833 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D Toce_1205 4Fe-4S ferredoxin iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D Toce_1197 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Toce_1832 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Toce_1200 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Toce_1834 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Toce_1199 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D Toce_1833 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D Toce_0785 NAD-dependent formate dehydrogenase catalytic subunit K05299 fdhA; formate dehydrogenase (NADP+) alpha subunit [EC:1.17.1.10]
D Toce_0786 hydrogenase, Fe-only K25123 hydA2; iron hydrogenase HydA2 [EC:1.12.7.-]
D Toce_0802 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Toce_0805 5; methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Toce_1472 Formimidoyltetrahydrofolate cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D Toce_0804 Formimidoyltetrahydrofolate cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D Toce_1081 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Toce_0807 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Toce_0812 dihydropteroate synthase DHPS K15023 acsE; 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase [EC:2.1.1.258]
D Toce_0796 dihydropteroate synthase DHPS K15023 acsE; 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase [EC:2.1.1.258]
D Toce_1080 Methionine synthase K15023 acsE; 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase [EC:2.1.1.258]
D Toce_0761 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Toce_0335 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Toce_0800 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Toce_0799 iron-sulfur cluster-binding protein CooF K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D Toce_0382 Fe-S-cluster K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D Toce_0813 CO dehydrogenase/acetyl-CoA synthase complex, beta subunit K14138 acsB; acetyl-CoA synthase [EC:2.3.1.169]
D Toce_0811 acetyl-CoA decarbonylase/synthase gamma subunit K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D Toce_0810 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D Toce_1047 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Toce_0555 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D Toce_1048 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:toc00680]
D Toce_0243 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Toce_0785 NAD-dependent formate dehydrogenase catalytic subunit K05299 fdhA; formate dehydrogenase (NADP+) alpha subunit [EC:1.17.1.10]
D Toce_0786 hydrogenase, Fe-only K25123 hydA2; iron hydrogenase HydA2 [EC:1.12.7.-]
D Toce_0811 acetyl-CoA decarbonylase/synthase gamma subunit K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245]
D Toce_0810 CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245]
D Toce_0761 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Toce_0335 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Toce_0800 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Toce_0799 iron-sulfur cluster-binding protein CooF K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D Toce_0382 Fe-S-cluster K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D Toce_2065 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Toce_1850 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Toce_1875 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Toce_1810 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Toce_0360 fructose-bisphosphate aldolase; D-fructose 1,6-bisphosphatase K01622 K01622; fructose 1,6-bisphosphate aldolase/phosphatase [EC:4.1.2.13 3.1.3.11]
D Toce_0870 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Toce_1535 Tetrahydromethanopterin S-methyltransferase K00584 mtrH; tetrahydromethanopterin S-methyltransferase subunit H [EC:7.2.1.4]
D Toce_1048 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Toce_1047 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Toce_2139 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Toce_2138 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Toce_2141 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Toce_2140 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
D Toce_1851 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Toce_0706 methyltransferase cognate corrinoid protein K16179 mtbC; dimethylamine corrinoid protein
D Toce_0301 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
C 00910 Nitrogen metabolism [PATH:toc00910]
D Toce_1662 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D Toce_1201 glutamate dehydrogenase (NAD) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D Toce_2208 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00920 Sulfur metabolism [PATH:toc00920]
D Toce_2240 Substrate-binding region of ABC-type glycine betaine transport system K15553 ssuA; sulfonate transport system substrate-binding protein
D Toce_2239 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Toce_1235 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D Toce_0087 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Toce_2115 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Toce_0731 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Toce_0711 cystathionine beta-synthase (acetylserine-dependent) K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Toce_1789 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:toc00061]
D Toce_1058 acyl carrier protein K02078 acpP; acyl carrier protein
D Toce_1056 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Toce_1053 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Toce_1059 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Toce_1057 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Toce_2008 3-hydroxyacyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Toce_1055 enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D Toce_0214 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:toc00561]
D Toce_0646 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Toce_0515 glycerol 2-dehydrogenase (NAD+) K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D Toce_1052 phosphate:acyl-(acyl carrier protein) acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Toce_1978 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Toce_1155 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Toce_0067 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Toce_0922 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Toce_1869 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
C 00564 Glycerophospholipid metabolism [PATH:toc00564]
D Toce_0979 glycerol 3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Toce_1978 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Toce_1155 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Toce_0067 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Toce_0922 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D Toce_1252 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Toce_0251 fumarate reductase/succinate dehydrogenase flavoprotein domain protein K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:toc00230]
D Toce_1274 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Toce_0594 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D Toce_0825 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D Toce_0049 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Toce_1501 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Toce_1497 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Toce_1499 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Toce_1502 phosphoribosylformylglycinamidine synthase subunit II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D Toce_1504 phosphoribosylformylglycinamidine synthase, purS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D Toce_1503 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Toce_1500 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Toce_1506 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Toce_1505 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Toce_1174 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Toce_1498 IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Toce_1365 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Toce_1169 5'-nucleotidase; exopolyphosphatase; 3'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Toce_0595 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Toce_0966 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Toce_2097 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D Toce_2129 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Toce_1649 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Toce_1782 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Toce_0353 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Toce_1022 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Toce_2133 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Toce_1992 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Toce_0512 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D Toce_0930 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D Toce_1364 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Toce_0110 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Toce_2248 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Toce_1667 2',3'-cyclic-nucleotide 2'-phosphodiesterase., 5'-nucleotidase K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5]
D Toce_1208 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D Toce_0139 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Toce_0103 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
C 00240 Pyrimidine metabolism [PATH:toc00240]
D Toce_1255 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Toce_1649 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Toce_0103 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Toce_0738 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Toce_2181 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Toce_1154 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D Toce_1604 phosphoribulokinase/uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D Toce_1169 5'-nucleotidase; exopolyphosphatase; 3'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Toce_1667 2',3'-cyclic-nucleotide 2'-phosphodiesterase., 5'-nucleotidase K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5]
D Toce_2064 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Toce_1016 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Toce_1208 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D Toce_0593 thymidine phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D Toce_0592 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D Toce_1992 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Toce_2133 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Toce_2063 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Toce_0011 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Toce_1229 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Toce_2112 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:toc00250]
D Toce_1173 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Toce_2194 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Toce_0605 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Toce_1453 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Toce_0156 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Toce_0157 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Toce_2248 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Toce_1174 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Toce_1201 glutamate dehydrogenase (NAD) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D Toce_2208 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Toce_1503 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Toce_1967 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Toce_1501 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:toc00260]
D Toce_0625 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Toce_0624 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Toce_0664 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D Toce_2065 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Toce_0646 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D Toce_1851 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D Toce_0324 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_0814 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Toce_1801 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Toce_1802 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Toce_1803 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
C 00270 Cysteine and methionine metabolism [PATH:toc00270]
D Toce_2115 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Toce_0731 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Toce_0711 cystathionine beta-synthase (acetylserine-dependent) K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Toce_0712 cystathionine gamma-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Toce_1078 methyltransferase cognate corrinoid protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Toce_0367 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Toce_1158 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Toce_1149 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Toce_1011 methylthioadenosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D Toce_1656 purine or other phosphorylase family 1 K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D Toce_0364 methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D Toce_0966 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Toce_1799 methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D Toce_0247 2,3-diketo-5-methylthio-1-phosphopentanephosphat ase K08966 mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87]
D Toce_1559 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D Toce_1763 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D Toce_0625 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Toce_0624 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Toce_1789 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Toce_1790 O-acetylhomoserine sulfhydrolase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Toce_0873 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Toce_1173 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Toce_0087 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Toce_1441 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Toce_1801 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Toce_1802 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
C 00280 Valine, leucine and isoleucine degradation [PATH:toc00280]
D Toce_0873 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Toce_0831 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D Toce_1567 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1197 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Toce_1832 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D Toce_1199 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D Toce_1833 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2]
D Toce_1200 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
D Toce_1834 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:toc00290]
D Toce_1803 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Toce_0873 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Toce_0831 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D Toce_1567 leucine dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
C 00300 Lysine biosynthesis [PATH:toc00300]
D Toce_0625 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Toce_0624 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Toce_0017 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Toce_0889 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Toce_1760 dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Toce_1018 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Toce_1019 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Toce_1137 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Toce_0947 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Toce_0948 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:toc00310]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_0940 Acetylornithine transaminase K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D Toce_1489 dihydrodipicolinate reductase K21672 ord; 2,4-diaminopentanoate dehydrogenase [EC:1.4.1.12 1.4.1.26]
D Toce_0848 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00220 Arginine biosynthesis [PATH:toc00220]
D Toce_0156 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Toce_0157 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Toce_1503 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Toce_2208 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Toce_1201 glutamate dehydrogenase (NAD) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D Toce_1173 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00330 Arginine and proline metabolism [PATH:toc00330]
D Toce_2199 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D Toce_0010 Orn/Lys/Arg decarboxylase major region K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D Toce_1150 agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D Toce_1149 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Toce_1158 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D Toce_0940 Acetylornithine transaminase K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D Toce_0324 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Toce_0024 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Toce_1173 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Toce_0848 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Toce_1677 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D Toce_1489 dihydrodipicolinate reductase K21672 ord; 2,4-diaminopentanoate dehydrogenase [EC:1.4.1.12 1.4.1.26]
D Toce_1679 D-proline reductase (dithiol) K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D Toce_1683 D-proline reductase (dithiol) K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D Toce_1681 D-proline reductase (dithiol) K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
C 00340 Histidine metabolism [PATH:toc00340]
D Toce_1416 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Toce_1555 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D Toce_1476 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D Toce_1475 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D Toce_1473 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D Toce_1474 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2]
D Toce_0324 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:toc00350]
D Toce_1173 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Toce_1416 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Toce_0324 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Toce_0214 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00360 Phenylalanine metabolism [PATH:toc00360]
D Toce_0324 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D Toce_1173 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Toce_1416 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Toce_0848 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Toce_0376 2-oxopent-4-enoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D Toce_0377 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00380 Tryptophan metabolism [PATH:toc00380]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_0634 tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1]
D Toce_0324 amine oxidase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:toc00400]
D Toce_0621 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Toce_0359 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Toce_1326 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D Toce_0358 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Toce_0622 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Toce_1173 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Toce_1416 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
C 00430 Taurine and hypotaurine metabolism [PATH:toc00430]
D Toce_1453 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Toce_1201 glutamate dehydrogenase (NAD) K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D Toce_1047 phosphotransacetylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Toce_0555 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8]
D Toce_1048 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:toc00450]
D Toce_0712 cystathionine gamma-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Toce_1078 methyltransferase cognate corrinoid protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Toce_1559 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D Toce_0155 thioredoxin reductase (NADPH) K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Toce_1980 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Toce_0774 L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Toce_0028 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:toc00460]
D Toce_2194 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Toce_2065 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:toc00470]
D Toce_1915 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Toce_0289 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Toce_0848 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Toce_0466 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Toce_0210 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Toce_1503 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D Toce_2196 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Toce_2193 Asp/Glu/hydantoin racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Toce_0950 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Toce_1018 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Toce_1137 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Toce_1489 dihydrodipicolinate reductase K21672 ord; 2,4-diaminopentanoate dehydrogenase [EC:1.4.1.12 1.4.1.26]
D Toce_1491 alanine racemase domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
D Toce_1485 D-ornithine 4,5-aminomutase E subunit K17898 oraE; D-ornithine 4,5-aminomutase subunit beta [EC:5.4.3.5]
D Toce_1486 D-ornithine 4,5-aminomutase S subunit K17899 oraS; D-ornithine 4,5-aminomutase subunit alpha [EC:5.4.3.5]
D Toce_1677 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D Toce_1679 D-proline reductase (dithiol) K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D Toce_1683 D-proline reductase (dithiol) K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D Toce_1681 D-proline reductase (dithiol) K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
C 00480 Glutathione metabolism [PATH:toc00480]
D Toce_1842 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D Toce_1896 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Toce_1149 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:toc00542]
D Toce_1276 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:toc00541]
D Toce_0480 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D Toce_0568 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Toce_0502 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D Toce_1798 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Toce_0510 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Toce_0511 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Toce_0048 glucosamine-1-phosphate N-acetyltransferase; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Toce_2061 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Toce_1591 nucleotide sugar dehydrogenase K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D Toce_1590 oxidoreductase domain protein K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
C 00550 Peptidoglycan biosynthesis [PATH:toc00550]
D Toce_0954 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Toce_2016 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Toce_0851 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Toce_0953 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Toce_0950 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Toce_0947 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Toce_0466 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Toce_0210 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Toce_0948 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Toce_1253 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Toce_1647 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Toce_1761 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Toce_0949 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Toce_0952 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Toce_1390 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Toce_1339 penicillin-binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Toce_0743 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Toce_0946 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D Toce_0254 Peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A
D Toce_0780 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Toce_1270 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Toce_1144 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Toce_0645 Serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:toc00552]
D Toce_1647 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Toce_1761 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Toce_1276 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Toce_1704 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D Toce_0770 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D Toce_1869 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:toc00543]
D Toce_0509 glycosyl transferase group 1 K03208 wcaI; putative colanic acid biosynthesis glycosyltransferase WcaI
D Toce_1276 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D Toce_1698 glycosyl transferase group 1 K20999 pslF; polysaccharide biosynthesis protein PslF
D Toce_2115 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:toc00730]
D Toce_0021 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Toce_1465 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Toce_1130 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Toce_1464 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Toce_2273 iron-only hydrogenase maturation protein HydG K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D Toce_0642 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Toce_0020 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Toce_0828 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D Toce_0139 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:toc00740]
D Toce_1693 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Toce_1695 diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Toce_1692 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Toce_1694 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Toce_1233 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Toce_0642 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Toce_1274 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Toce_1347 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism
D Toce_2206 pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:toc00760]
D Toce_0374 Quinolinate phosphoribosyl transferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Toce_1650 Quinolinate phosphoribosyl transferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Toce_0595 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D Toce_1169 5'-nucleotidase; exopolyphosphatase; 3'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Toce_1667 2',3'-cyclic-nucleotide 2'-phosphodiesterase., 5'-nucleotidase K08693 yfkN; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase [EC:3.1.4.16 3.1.3.6 3.1.3.5]
D Toce_0768 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Toce_0103 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Toce_1385 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D Toce_1304 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:toc00770]
D Toce_2084 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D Toce_1024 Phosphopantothenoylcysteine decarboxylase; Phosphopantothenate-cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Toce_0103 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D Toce_1041 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Toce_1652 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Toce_1917 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Toce_0873 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:toc00780]
D Toce_1059 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Toce_1057 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Toce_2008 3-hydroxyacyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Toce_2272 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6]
D Toce_0887 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:toc00785]
D Toce_0610 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Toce_0611 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2028 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Toce_1430 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Toce_0814 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:toc00790]
D Toce_0571 GTP cyclohydrolase I K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D Toce_0573 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3]
D Toce_0572 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Toce_0685 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Toce_1693 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Toce_0570 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Toce_0274 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Toce_0275 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Toce_0276 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Toce_0272 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Toce_0273 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Toce_1988 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:toc00670]
D Toce_0802 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D Toce_0805 5; methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Toce_1472 Formimidoyltetrahydrofolate cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D Toce_0804 Formimidoyltetrahydrofolate cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D Toce_2065 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Toce_1499 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Toce_1498 IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Toce_1474 glutamate formiminotransferase K00603 fctD; glutamate formiminotransferase / 5-formyltetrahydrofolate cyclo-ligase [EC:2.1.2.5 6.3.3.2]
D Toce_1027 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Toce_1078 methyltransferase cognate corrinoid protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Toce_2112 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D Toce_1081 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Toce_0807 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Toce_0352 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:toc00860]
D Toce_0319 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Toce_0323 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Toce_0322 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Toce_0320 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Toce_0708 Uroporphyrinogen-III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Toce_0710 Uroporphyrinogen decarboxylase (URO-D) K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Toce_0321 uroporphyrinogen-III C-methyltransferase; uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D Toce_0309 cobalamin (vitamin B12) biosynthesis CbiX protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D Toce_0314 precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D Toce_0317 precorrin-3 methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D Toce_0315 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D Toce_0316 cobalamin (vitamin B12) biosynthesis CbiG protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D Toce_0318 precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D Toce_0311 cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D Toce_0313 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196]
D Toce_0312 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D Toce_0310 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D Toce_0308 hydrogenobyrinic acid a; cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Toce_1083 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Toce_0449 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Toce_1421 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Toce_1424 Adenosylcobinamide-phosphateguanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D Toce_1420 cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Toce_0158 nicotinate-nucleotide/dimethylbenzimidazolephosp horibosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Toce_1419 alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D Toce_1423 GHMP kinase K16651 pduX; L-threonine kinase [EC:2.7.1.177]
D Toce_1422 L-threonine-O-3-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
D Toce_1367 von Willebrand factor type A K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
D Toce_1368 Magnesium chelatase K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:toc00130]
D Toce_1348 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Toce_1349 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D Toce_1347 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Toce_1728 UbiA prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Toce_1551 UbiA prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:toc00900]
D Toce_2118 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D Toce_0043 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D Toce_2117 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D Toce_1249 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Toce_1156 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1
D Toce_1347 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Toce_1157 isopentenyl-diphosphate delta-isomerase, type 2 K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D Toce_1308 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Toce_1253 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Toce_1701 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Toce_1702 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D Toce_0633 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:toc00261]
D Toce_0633 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
D Toce_0625 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Toce_0624 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Toce_0017 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Toce_0889 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:toc00521]
D Toce_1809 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
D Toce_0825 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Toce_1809 glucokinase, ROK family K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis [PATH:toc00401]
D Toce_0622 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Toce_1173 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Toce_1416 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D Toce_1056 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Toce_1057 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Toce_1058 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D Toce_0367 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
D Toce_1491 alanine racemase domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:toc00362]
D Toce_0376 2-oxopent-4-enoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D Toce_0378 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D Toce_0377 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
D Toce_1828 glutaconyl-CoA decarboxylase beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Toce_1527 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Toce_1194 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Toce_1829 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Toce_1195 sodium pump decarboxylase gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D Toce_1830 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
C 00627 Aminobenzoate degradation [PATH:toc00627]
D Toce_0665 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Toce_1347 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:toc00625]
D Toce_0214 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation [PATH:toc00622]
D Toce_0378 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D Toce_0376 2-oxopent-4-enoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D Toce_0377 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00633 Nitrotoluene degradation [PATH:toc00633]
D Toce_0761 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Toce_0335 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Toce_0800 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D Toce_0799 iron-sulfur cluster-binding protein CooF K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D Toce_0382 Fe-S-cluster K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D Toce_2139 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Toce_2138 thiamine pyrophosphate protein domain protein TPP-binding protein K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Toce_2141 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Toce_2140 pyruvate ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:toc00621]
D Toce_0376 2-oxopent-4-enoate hydratase K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80]
D Toce_0378 4-hydroxy-2-oxovalerate aldolase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D Toce_0377 acetaldehyde dehydrogenase K04073 mhpF; acetaldehyde dehydrogenase [EC:1.2.1.10]
C 00626 Naphthalene degradation [PATH:toc00626]
D Toce_0214 iron-containing alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:toc03020]
D Toce_0111 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Toce_0112 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Toce_0147 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Toce_1023 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:toc03010]
D Toce_1156 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1
D Toce_1257 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Toce_0125 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Toce_0146 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Toce_0136 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Toce_2257 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Toce_0115 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D Toce_0133 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Toce_0154 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Toce_0118 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Toce_0145 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Toce_0114 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Toce_0144 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Toce_0132 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Toce_1232 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Toce_1066 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D Toce_0128 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Toce_2255 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Toce_0123 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Toce_0898 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Toce_0915 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Toce_2102 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Toce_0122 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Toce_0119 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Toce_0120 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Toce_0131 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Toce_0134 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Toce_2100 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Toce_2252 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Toce_2101 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Toce_2103 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Toce_0153 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Toce_0129 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Toce_0137 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Toce_0126 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D Toce_0148 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D Toce_0135 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Toce_1070 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D Toce_1402 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Toce_0763 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Toce_0124 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Toce_0121 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Toce_0130 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Toce_0050 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D Toce_0765 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Toce_1035 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Toce_0127 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Toce_2074 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Toce_1050 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D Toce_2106 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D Toce_2285 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D Toce_1403 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D Toce_0143 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Toce_0113 LSU ribosomal protein L7AE K07590 RP-L7A; large subunit ribosomal protein L7A
D Toce_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Toce_R0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Toce_R0025 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Toce_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Toce_R0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Toce_R0022 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Toce_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Toce_R0006 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Toce_R0021 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:toc00970]
D Toce_R0043 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Toce_R0024 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Toce_R0045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Toce_R0040 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Toce_R0058 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Toce_R0059 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Toce_R0008 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Toce_R0020 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Toce_R0031 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Toce_R0028 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Toce_R0038 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Toce_R0046 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Toce_R0063 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Toce_R0048 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Toce_R0047 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Toce_R0029 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Toce_R0062 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Toce_R0041 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Toce_R0053 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Toce_R0039 tRNA-His K14226 tRNA-His; tRNA His
D Toce_R0023 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Toce_R0027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0033 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0037 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Toce_R0014 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Toce_R0064 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Toce_R0049 tRNA-Met K14230 tRNA-Met; tRNA Met
D Toce_R0050 tRNA-Met K14230 tRNA-Met; tRNA Met
D Toce_R0052 tRNA-Met K14230 tRNA-Met; tRNA Met
D Toce_R0017 tRNA-Met K14230 tRNA-Met; tRNA Met
D Toce_R0030 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Toce_R0012 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Toce_R0042 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Toce_R0013 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Toce_R0057 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Toce_R0061 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Toce_R0056 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Toce_R0060 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Toce_R0016 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Toce_R0007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Toce_R0051 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Toce_R0018 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Toce_R0054 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Toce_R0015 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Toce_R0044 tRNA-Val K14237 tRNA-Val; tRNA Val
D Toce_R0026 tRNA-Val K14237 tRNA-Val; tRNA Val
D Toce_R0032 tRNA-Val K14237 tRNA-Val; tRNA Val
D Toce_R0010 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D Toce_0389 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D Toce_0656 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Toce_0657 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Toce_0655 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Toce_1355 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Toce_1358 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Toce_0822 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Toce_1405 Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Toce_0176 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Toce_0774 L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Toce_2114 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Toce_0028 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Toce_1027 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Toce_0684 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Toce_0772 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Toce_1642 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Toce_0164 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Toce_2184 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Toce_1245 YbaK/prolyl-tRNA synthetase associated region K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Toce_1246 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Toce_1359 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Toce_1397 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Toce_1396 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Toce_1389 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Toce_0260 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:toc03060]
D Toce_0138 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Toce_2105 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Toce_1848 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Toce_1371 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Toce_1370 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Toce_1374 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Toce_2282 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Toce_1709 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Toce_1065 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Toce_R0055 RNA component of signal recognition particle K01983 ffs; SRP RNA
D Toce_1063 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Toce_0186 arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1) K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Toce_0185 arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1) K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Toce_1794 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Toce_1014 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:toc04122]
D Toce_1465 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Toce_1130 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Toce_0087 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Toce_0082 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Toce_1132 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Toce_0274 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Toce_0384 thiamineS protein K03636 moaD; sulfur-carrier protein
D Toce_0275 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Toce_0276 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Toce_1464 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Toce_1817 thiamineS protein K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:toc03018]
D Toce_1850 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Toce_1231 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Toce_1819 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Toce_0201 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Toce_1209 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Toce_1227 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Toce_1940 beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Toce_0870 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Toce_0909 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Toce_0278 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Toce_1186 RNA-binding protein Hfq K03666 hfq; host factor-I protein
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:toc03030]
D Toce_0868 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_0096 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_1242 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Toce_2148 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Toce_0014 DNA polymerase III gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Toce_0896 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Toce_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Toce_2251 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Toce_0931 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Toce_2256 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Toce_0936 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Toce_1072 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Toce_1653 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Toce_1757 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:toc03410]
D Toce_1640 8-oxoguanine DNA glycosylase domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D Toce_1511 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Toce_0259 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Toce_1191 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Toce_1512 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Toce_1653 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Toce_1366 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Toce_1757 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:toc03420]
D Toce_0099 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Toce_1670 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Toce_1671 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D Toce_1448 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Toce_1758 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Toce_1653 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Toce_1757 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:toc03430]
D Toce_1189 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Toce_1392 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Toce_1188 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Toce_1758 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Toce_1310 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Toce_1309 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Toce_1366 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Toce_2256 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Toce_0868 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_0096 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_1242 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Toce_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Toce_2148 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Toce_0896 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Toce_0014 DNA polymerase III gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Toce_1757 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:toc03440]
D Toce_1366 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Toce_2256 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Toce_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Toce_0924 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Toce_2146 DNA replication and repair protein RecR K06187 recR; recombination protein RecR
D Toce_1215 RecA protein K03553 recA; recombination protein RecA
D Toce_1653 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Toce_1381 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Toce_1380 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Toce_1382 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Toce_1038 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Toce_0373 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Toce_0868 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_0096 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_1242 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Toce_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Toce_2148 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Toce_0896 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Toce_0014 DNA polymerase III gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Toce_1025 transcriptional regulator, TrmB K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining [PATH:toc03450]
D Toce_0248 DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku
D Toce_0250 DNA polymerase LigD, polymerase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Toce_0249 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:toc02010]
D Toce_0193 extracellular solute-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D Toce_0194 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D Toce_0195 ABC transporter related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Toce_2240 Substrate-binding region of ABC-type glycine betaine transport system K15553 ssuA; sulfonate transport system substrate-binding protein
D Toce_2239 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Toce_2189 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Toce_0224 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Toce_2188 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Toce_0226 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Toce_2187 glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Toce_0225 glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Toce_1806 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Toce_1744 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10236 thuE; trehalose/maltose transport system substrate-binding protein
D Toce_1745 carbohydrate ABC transporter membrane protein 1, CUT1 family K10237 thuF; trehalose/maltose transport system permease protein
D Toce_1746 carbohydrate ABC transporter membrane protein 2, CUT1 family K10238 thuG; trehalose/maltose transport system permease protein
D Toce_1771 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17311 treS; trehalose transport system substrate-binding protein
D Toce_1773 carbohydrate ABC transporter membrane protein 1, CUT1 family K17312 treT; trehalose transport system permease protein
D Toce_1772 carbohydrate ABC transporter membrane protein 2, CUT1 family K17313 treU; trehalose transport system permease protein
D Toce_0587 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins
D Toce_0589 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Toce_0590 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Toce_0588 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Toce_1871 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Toce_1872 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein
D Toce_1873 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Toce_0354 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein
D Toce_0355 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein
D Toce_0356 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein
D Toce_0969 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Toce_0357 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Toce_1572 extracellular solute-binding protein family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D Toce_1571 amino acid ABC transporter membrane protein, PAAT family K17077 artQ; arginine/lysine/histidine transport system permease protein
D Toce_1570 amino acid ABC transporter ATP-binding protein, PAAT family K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D Toce_2192 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D Toce_2191 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Toce_2190 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein
D Toce_0658 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Toce_0659 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D Toce_0660 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Toce_0661 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Toce_0662 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D Toce_0061 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Toce_0063 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Toce_0062 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Toce_0305 cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D Toce_0584 conserved hypothetical protein K02009 cbiN; cobalt/nickel transport protein
D Toce_0583 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Toce_0304 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D Toce_0585 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Toce_0306 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Toce_0586 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Toce_0307 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Toce_0733 BioY protein K03523 bioY; biotin transport system substrate-specific component
D Toce_0151 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Toce_0349 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Toce_0149 cobalt ABC transporter, ATPase subunit K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Toce_0150 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Toce_0488 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D Toce_0489 ABC transporter related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Toce_1690 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D Toce_1691 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Toce_1645 ABC transporter related protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Toce_1646 ABC transporter related protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Toce_1673 ABC transporter related protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Toce_1672 ABC transporter related protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:toc02060]
D Toce_1427 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Toce_0866 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Toce_0265 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Toce_0340 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Toce_1982 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Toce_0269 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Toce_0338 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Toce_1984 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Toce_0267 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D Toce_0339 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D Toce_1983 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D Toce_1901 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_1905 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_0294 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_0564 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_1902 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component
D Toce_0300 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component
D Toce_0295 Protein-N(pi)-phosphohistidine--sugarphosphotran sferase K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203]
D Toce_1900 PTS system sorbose subfamily IIB component K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203]
D Toce_1904 PTS system sorbose subfamily IIB component K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203]
D Toce_1903 phosphotransferase system PTS sorbose-specific IIC subunit K17466 dgaC; D-glucosaminate PTS system EIIC component
D Toce_1434 PTS system glucitol/sorbitol-specific IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D Toce_1435 Protein-N(pi)-phosphohistidine--sugarphosphotran sferase K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D Toce_1436 PTS system, glucitol/sorbitol-specific, IIC subunit K02783 srlA; glucitol/sorbitol PTS system EIIC component
D Toce_1446 putative PTS IIA-like nitrogen-regulatory protein PtsN K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D Toce_1444 PTS system D-arabitol-specific IIC component, Gat family (TC 4.A.5.1.2) K02775 gatC; galactitol PTS system EIIC component
C 03070 Bacterial secretion system [PATH:toc03070]
D Toce_1334 conserved hypothetical protein K02456 gspG; general secretion pathway protein G
D Toce_1927 N-terminal methylation K02456 gspG; general secretion pathway protein G
D Toce_1371 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Toce_1370 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Toce_2105 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Toce_1848 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Toce_0138 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Toce_1374 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Toce_2282 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Toce_1709 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Toce_1063 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Toce_1065 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Toce_0426 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:toc02020]
D Toce_0968 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Toce_0967 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Toce_0354 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein
D Toce_1360 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D Toce_1586 flagellin domain protein K02406 fliC; flagellin
D Toce_1125 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
D Toce_1106 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Toce_1454 multi-sensor signal transduction histidine kinase K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3]
D Toce_1455 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D Toce_2235 multi-sensor signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D Toce_2236 two component transcriptional regulator, winged helix family K07668 vicR; two-component system, OmpR family, response regulator VicR
D Toce_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Toce_0645 Serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Toce_0199 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D Toce_1300 sporulation transcriptional activator Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Toce_1827 malic protein NAD-binding protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D Toce_1593 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Toce_0369 DegS sensor signal transduction histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D Toce_0370 two component transcriptional regulator, LuxR family K07692 degU; two-component system, NarL family, response regulator DegU
D Toce_0415 SAF domain protein K02279 cpaB; pilus assembly protein CpaB
D Toce_0409 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Toce_0411 Type II secretion system F domain protein K12510 tadB; tight adherence protein B
D Toce_2208 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Toce_1845 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC
D Toce_1856 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor
D Toce_1159 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Toce_0468 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Toce_0469 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Toce_0470 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Toce_1122 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Toce_1121 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Toce_1111 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Toce_0472 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Toce_2250 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Toce_0459 integral membrane sensor signal transduction histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3]
D Toce_0460 response regulator receiver protein K07719 glnL; two-component system, response regulator GlnL
D Toce_0546 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Toce_1742 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Toce_2061 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Toce_1599 Anti-sigma-28 factor FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:toc02024]
D Toce_1763 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D Toce_1186 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Toce_1934 amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) K20265 gadC; glutamate:GABA antiporter
D Toce_0090 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D Toce_0092 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D Toce_0091 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D Toce_0093 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D Toce_2250 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Toce_1695 diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Toce_2095 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Toce_0658 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Toce_0659 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D Toce_0660 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Toce_0661 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Toce_0662 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D Toce_0613 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Toce_0614 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Toce_0615 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Toce_0617 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Toce_0618 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Toce_2282 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Toce_2105 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Toce_1848 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Toce_0138 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Toce_1374 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Toce_1709 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Toce_1063 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Toce_1065 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Toce_0370 two component transcriptional regulator, LuxR family K07692 degU; two-component system, NarL family, response regulator DegU
D Toce_0199 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D Toce_1300 sporulation transcriptional activator Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:toc02030]
D Toce_0468 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Toce_0469 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Toce_1871 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Toce_1121 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Toce_0470 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Toce_1122 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Toce_1111 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Toce_1123 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D Toce_0472 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Toce_1124 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Toce_1159 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Toce_1096 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Toce_1109 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Toce_1110 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D Toce_1106 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Toce_1107 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:toc02040]
D Toce_1094 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Toce_1095 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Toce_1096 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Toce_1097 Flagellar assembly protein FliH/Type III secretion system HrpE K02411 fliH; flagellar assembly protein FliH
D Toce_1098 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Toce_1099 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Toce_1101 Flagellar hook-length control protein-like, C-terminal domain protein K02414 fliK; flagellar hook-length control protein FliK
D Toce_1108 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Toce_1109 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Toce_1110 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D Toce_1113 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Toce_1114 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Toce_1115 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Toce_1117 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Toce_1116 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Toce_1092 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Toce_1093 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Toce_1102 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Toce_1104 fagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D Toce_2011 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D Toce_2010 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Toce_2009 Flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D Toce_1597 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Toce_1596 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Toce_1586 flagellin domain protein K02406 fliC; flagellin
D Toce_1579 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D Toce_1578 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Toce_1106 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Toce_1107 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Toce_1599 Anti-sigma-28 factor FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D Toce_0933 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D Toce_1856 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor
D Toce_1125 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Toce_1850 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:toc04980]
D Toce_1198 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-]
D Toce_1078 methyltransferase cognate corrinoid protein K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:toc01501]
D Toce_0658 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Toce_0659 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D Toce_0660 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Toce_0661 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Toce_0662 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D Toce_0330 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1
D Toce_0329 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Toce_1390 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Toce_1339 penicillin-binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Toce_0743 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:toc01502]
D Toce_0466 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Toce_0210 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Toce_1915 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Toce_0289 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Toce_0948 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Toce_0949 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Toce_0952 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Toce_0645 Serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:toc01503]
D Toce_1786 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Toce_1795 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Toce_1360 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:toc01000]
C 01001 Protein kinases [BR:toc01001]
D Toce_1032 serine/threonine protein kinase with PASTA sensor(s) K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Toce_0500 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Toce_0968 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Toce_1454 multi-sensor signal transduction histidine kinase K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3]
D Toce_2235 multi-sensor signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D Toce_0369 DegS sensor signal transduction histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D Toce_0207 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Toce_1121 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Toce_0459 integral membrane sensor signal transduction histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:toc01009]
D Toce_0870 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Toce_1031 protein serine/threonine phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:toc01002]
D Toce_1014 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Toce_1926 type 4 prepilin peptidase 1 K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Toce_0900 spore protease K06012 gpr; spore protease [EC:3.4.24.78]
D Toce_0960 sigma-E processing peptidase SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
D Toce_0353 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Toce_1911 peptidase C26 K07010 K07010; putative glutamine amidotransferase
D Toce_0616 NLP/P60 protein K20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]
D Toce_1501 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Toce_1967 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Toce_0605 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Toce_0676 Abortive infection protein K07052 K07052; CAAX protease family protein
D Toce_0645 Serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Toce_1513 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Toce_1760 dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Toce_0140 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Toce_1933 peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D Toce_1325 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Toce_0841 peptidase M29 aminopeptidase II K19689 ampS; aminopeptidase [EC:3.4.11.-]
D Toce_1997 isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D Toce_2096 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Toce_1219 Vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Toce_0749 peptidase M50 K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-]
D Toce_1250 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Toce_1910 D-aminopeptidase DppA K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
D Toce_0330 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1
D Toce_0519 peptidase S58 DmpA K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D Toce_1360 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D Toce_0485 peptidase S8 and S53 subtilisin kexin sedolisin K01342 aprE; subtilisin [EC:3.4.21.62]
D Toce_1777 peptidase S8 and S53 subtilisin kexin sedolisin K17734 aprX; serine protease AprX [EC:3.4.21.-]
D Toce_0780 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Toce_1270 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Toce_1144 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Toce_1767 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Toce_1764 ATP-dependent proteinase K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Toce_1765 ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
D Toce_1045 PDZ/DHR/GLGF domain protein K07177 K07177; Lon-like protease
D Toce_1181 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Toce_1794 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Toce_1688 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Toce_1528 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Toce_2177 signal peptide peptidase A K04773 sppA; protease IV [EC:3.4.21.-]
D Toce_0041 cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6]
D Toce_0619 Rhomboid family protein K07059 K07059; rhomboid family protein
D Toce_1301 stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
D Toce_1088 ATP dependent peptidase CodWX, CodW component K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D Toce_1393 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:toc01003]
D Toce_1869 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D Toce_0491 glycosyl transferase family 2 K16150 K16150; glycogen synthase [EC:2.4.1.11]
D Toce_1390 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Toce_1698 glycosyl transferase group 1 K20999 pslF; polysaccharide biosynthesis protein PslF
D Toce_1704 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D Toce_1276 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:toc01005]
D Toce_1276 conserved hypothetical protein K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:toc01011]
D Toce_0954 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Toce_2016 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Toce_0851 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Toce_0953 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Toce_0950 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Toce_0947 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Toce_0466 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Toce_0210 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Toce_1915 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Toce_0289 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Toce_2196 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Toce_2193 Asp/Glu/hydantoin racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Toce_0949 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Toce_0952 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Toce_1647 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Toce_1761 phosphoesterase PA-phosphatase related protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Toce_1808 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Toce_1390 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Toce_1339 penicillin-binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Toce_0743 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Toce_0946 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D Toce_0254 Peptidoglycan glycosyltransferase K05364 pbpA; penicillin-binding protein A
D Toce_0780 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Toce_1270 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Toce_1144 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Toce_0645 Serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D Toce_1651 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Toce_1340 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D Toce_2116 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Toce_1387 spore cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Toce_0105 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D Toce_1378 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D Toce_2015 stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D Toce_0035 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D Toce_1786 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Toce_1795 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:toc01004]
D Toce_1056 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Toce_1053 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Toce_1059 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Toce_1057 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Toce_2008 3-hydroxyacyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Toce_1055 enoyl-(acyl-carrier-protein) reductase II K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D Toce_1052 phosphate:acyl-(acyl carrier protein) acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Toce_1978 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Toce_1155 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Toce_0067 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:toc01008]
D Toce_0633 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46]
C 01006 Prenyltransferases [BR:toc01006]
D Toce_1308 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D Toce_1253 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Toce_1187 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Toce_1728 UbiA prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Toce_1551 UbiA prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D Toce_1348 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:toc01007]
D Toce_0389 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D Toce_1389 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Toce_0260 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Toce_2114 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Toce_2184 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Toce_0028 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Toce_1642 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Toce_0684 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Toce_0772 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Toce_0164 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Toce_1358 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Toce_1359 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Toce_0822 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Toce_0176 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Toce_1245 YbaK/prolyl-tRNA synthetase associated region K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Toce_1246 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Toce_1405 Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Toce_1355 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Toce_1397 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Toce_1396 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Toce_1173 aminotransferase class I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Toce_1019 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D Toce_1510 aromatic amino acid aminotransferase apoenzyme K10907 K10907; aminotransferase [EC:2.6.1.-]
D Toce_1416 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Toce_0940 Acetylornithine transaminase K09251 patA; putrescine aminotransferase [EC:2.6.1.82]
D Toce_0323 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Toce_0848 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Toce_0873 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:toc00194]
D Toce_2018 ATPase, F1 complex, delta/epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Toce_2019 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Toce_2020 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Toce_2021 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Toce_2022 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Toce_2023 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Toce_2024 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Toce_2025 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:toc03000]
D Toce_2013 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D Toce_0926 CBS domain containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D Toce_1878 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Toce_1733 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Toce_1774 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Toce_0325 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D Toce_0794 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Toce_0591 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Toce_2209 transcriptional regulator, MerR family K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D Toce_1343 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Toce_0064 ferric uptake regulator, Fur family K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D Toce_2134 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D Toce_0385 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D Toce_2250 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Toce_1129 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D Toce_0183 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Toce_1449 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Toce_1627 transcriptional regulator, ArsR family K26993 sdpR; ArsR family transcriptional regulator, repressor of sdpIR and other operons
D Toce_0329 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Toce_0887 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Toce_0046 pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D Toce_2033 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Toce_0648 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator
D Toce_1492 PAS modulated sigma54 specific transcriptional regulator, Fis family K06714 rocR; arginine utilization regulatory protein
D Toce_2183 PAS modulated sigma54 specific transcriptional regulator, Fis family K06714 rocR; arginine utilization regulatory protein
D Toce_2000 PAS modulated sigma54 specific transcriptional regulator, Fis family K06714 rocR; arginine utilization regulatory protein
D Toce_1466 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D Toce_1787 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D Toce_0688 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D Toce_1090 GTP-sensing pleiotropic transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D Toce_0401 helix-turn-helix domain protein K07729 K07729; putative transcriptional regulator
D Toce_1914 transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D Toce_1986 transcriptional antiterminator, BglG family K03483 mtlR; mannitol operon transcriptional activator
D Toce_0054 transcriptional antiterminator, BglG K03483 mtlR; mannitol operon transcriptional activator
D Toce_0264 transcriptional antiterminator, BglG K03491 licR; probable licABCH operon transcriptional regulator
D Toce_1357 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Toce_0025 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Toce_0100 transcriptional regulator, AbrB family K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D Toce_2275 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Toce_2277 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Toce_2120 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Toce_1303 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism
D Toce_0906 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Toce_2126 transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D Toce_1854 transcriptional regulator, DeoR family K05311 cggR; central glycolytic genes regulator
D Toce_1016 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Toce_0943 MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:toc03021]
D Toce_0147 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Toce_0111 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Toce_0112 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Toce_1023 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Toce_0933 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D Toce_2217 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Toce_1267 RNA polymerase, sigma subunit, RpoX/SigF K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Toce_0961 RNA polymerase, sigma 29 subunit, SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Toce_0962 RNA polymerase, sigma subunit, RpsG/SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Toce_1338 RNA polymerase, sigma 27/28 subunit, RpsK/SigK K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D Toce_2109 RNA polymerase, sigma 30 subunit, SigH K27000 sigH; RNA polymerase sigma-H factor
D Toce_2050 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K03093 sigI; RNA polymerase sigma-I factor
D Toce_1856 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor
D Toce_1125 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
D Toce_1240 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D Toce_1311 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Toce_2104 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Toce_1541 protein serine/threonine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D Toce_1356 positive regulator of sigma(E), RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC
D Toce_0163 GreA/GreB family elongation factor K03624 greA; transcription elongation factor GreA
D Toce_0465 GreA/GreB family elongation factor K03624 greA; transcription elongation factor GreA
D Toce_0201 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:toc03019]
D Toce_0454 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Toce_0752 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D Toce_1060 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Toce_1227 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Toce_1940 beta-lactamase domain-containing protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D Toce_1209 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D Toce_1819 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Toce_1850 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Toce_1231 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Toce_0201 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Toce_0870 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D Toce_0909 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Toce_0278 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Toce_1186 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Toce_1593 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D Toce_0863 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:toc03011]
D Toce_1156 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1
D Toce_1257 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Toce_0125 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Toce_0146 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Toce_0136 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Toce_2257 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Toce_0115 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D Toce_0133 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Toce_0154 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Toce_0118 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Toce_0145 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Toce_0114 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Toce_0144 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Toce_0132 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D Toce_1232 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Toce_1066 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D Toce_0128 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Toce_2255 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Toce_0123 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Toce_0898 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Toce_0915 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Toce_2102 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Toce_0122 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Toce_0119 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Toce_0120 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Toce_0131 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Toce_0134 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Toce_2252 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Toce_2101 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Toce_2103 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Toce_2100 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Toce_0153 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Toce_0129 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Toce_0137 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Toce_0126 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D Toce_0148 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D Toce_0135 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Toce_1070 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D Toce_1402 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Toce_0763 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Toce_0124 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Toce_0121 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Toce_0130 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Toce_0765 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Toce_1035 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Toce_0127 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Toce_2074 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Toce_1050 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D Toce_2106 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D Toce_2285 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D Toce_1403 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D Toce_0143 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Toce_0050 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D Toce_0113 LSU ribosomal protein L7AE K07590 RP-L7A; large subunit ribosomal protein L7A
D Toce_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Toce_R0006 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Toce_R0021 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Toce_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Toce_R0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Toce_R0025 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Toce_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Toce_R0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Toce_R0022 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:toc03009]
D Toce_1060 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Toce_0454 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Toce_0767 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D Toce_1240 transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D Toce_1311 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Toce_2104 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Toce_0637 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Toce_0031 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Toce_1029 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Toce_1040 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Toce_0912 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Toce_2278 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Toce_0944 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Toce_0023 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Toce_1306 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Toce_0981 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D Toce_2111 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Toce_2221 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Toce_0859 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Toce_1030 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Toce_1553 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Toce_1148 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Toce_0905 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Toce_1015 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Toce_1892 (SSU ribosomal protein S18P)-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Toce_2159 GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Toce_1068 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D Toce_1221 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D Toce_0911 (LSU ribosomal protein L11P)-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Toce_0752 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D Toce_1352 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Toce_2113 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D Toce_0978 ribosome-associated GTPase EngA K03977 engA; GTPase
D Toce_1071 ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
D Toce_1811 GTP-binding proten HflX K03665 hflX; GTPase
D Toce_2068 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Toce_1364 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Toce_1236 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Toce_1241 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D Toce_0003 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein
D Toce_0771 iojap-like protein K09710 ybeB; ribosome-associated protein
D Toce_0921 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D Toce_1603 SSU ribosomal protein S30P; sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D Toce_0635 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D Toce_1049 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:toc03016]
D Toce_1495 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Toce_1735 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D Toce_1245 YbaK/prolyl-tRNA synthetase associated region K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Toce_1246 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Toce_1642 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Toce_0772 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Toce_0028 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Toce_2184 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Toce_0164 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Toce_1358 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Toce_1355 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Toce_0822 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Toce_1405 Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Toce_0176 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Toce_2114 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Toce_0684 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Toce_1359 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Toce_1397 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Toce_1396 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Toce_1389 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Toce_0260 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Toce_1363 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Toce_0914 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Toce_1987 tRNA (adenine-58-N(1)-) methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D Toce_0152 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Toce_1234 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Toce_0479 tRNA pseudouridine synthase D TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D Toce_1465 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Toce_1130 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Toce_2068 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Toce_1187 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Toce_2280 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Toce_2279 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Toce_1980 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Toce_2284 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Toce_R0011 RNA component of RNaseP K01978 rnpB; M1 RNA
D Toce_1783 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D Toce_1216 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Toce_0389 glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D Toce_2153 tRNA-adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D Toce_2083 tRNA-U20-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Toce_1190 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Toce_0913 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D Toce_1086 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D Toce_1069 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Toce_0934 protein of unknown function DUF633 K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D Toce_1554 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Toce_1398 RNA methyltransferase, TrmH family, group 3 K03437 spoU; RNA methyltransferase, TrmH family
D Toce_1132 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Toce_1816 PP-loop domain protein K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D Toce_0663 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Toce_0082 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Toce_1377 S-adenosylmethionine--tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Toce_0570 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Toce_1469 domain of unknown function DUF1730 K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Toce_0612 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Toce_1375 tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Toce_1464 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D Toce_2098 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Toce_1893 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Toce_1891 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Toce_1894 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Toce_1046 cytidyltransferase-related domain protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D Toce_1819 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Toce_1231 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:toc03012]
D Toce_1237 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D Toce_1404 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Toce_1256 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D Toce_0117 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Toce_2107 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Toce_2128 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Toce_0116 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Toce_0775 selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D Toce_2072 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1
D Toce_1254 ribosome recycling factor K02838 frr; ribosome recycling factor
D Toce_2071 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Toce_0051 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Toce_0142 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1
D Toce_1324 translation elongation factor P (EF-P) K02356 efp; elongation factor P
D Toce_1708 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:toc03110]
D Toce_2123 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D Toce_1766 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Toce_1089 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D Toce_0909 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Toce_0278 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Toce_0907 chaperonin Cpn60/TCP-1 K22447 cct; archaeal chaperonin
D Toce_0910 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Toce_0018 Hsp33 protein K04083 hslO; molecular chaperone Hsp33
D Toce_0908 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Toce_1918 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D Toce_0277 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D Toce_1360 HtrA2 peptidase K04771 degP; serine protease Do [EC:3.4.21.107]
D Toce_2096 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Toce_1219 Vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Toce_2025 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Toce_0485 peptidase S8 and S53 subtilisin kexin sedolisin K01342 aprE; subtilisin [EC:3.4.21.62]
D Toce_1076 PpiC-type peptidyl-prolyl cis-trans isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D Toce_0060 thioredoxin K03671 TXN; thioredoxin
D Toce_1622 Thioredoxin domain protein K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:toc04131]
D Toce_1649 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Toce_0454 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Toce_2132 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D Toce_0186 arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1) K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Toce_0185 arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1) K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Toce_1855 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Toce_2092 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Toce_0871 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:toc03032]
D Toce_0936 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Toce_0104 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta
D Toce_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Toce_2251 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Toce_0931 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Toce_2256 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Toce_0868 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_0096 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_1242 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Toce_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Toce_0896 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Toce_0014 DNA polymerase III gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Toce_2148 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Toce_1072 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Toce_1653 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Toce_1757 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Toce_0008 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Toce_0007 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Toce_1085 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:toc03036]
D Toce_1060 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Toce_0104 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta
D Toce_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Toce_1186 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Toce_1062 chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D Toce_1139 chromosome segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A
D Toce_1140 chromosome segregation and condensation protein, ScpB K06024 scpB; segregation and condensation protein B
D Toce_0958 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Toce_0108 Septum formation initiator K13052 divIC; cell division protein DivIC
D Toce_1691 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Toce_1223 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Toce_0945 cell division protein FtsL K03586 ftsL; cell division protein FtsL
D Toce_0955 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ
D Toce_0951 spore cortex peptidoglycan biosynthesis regulator SpoVE K03588 ftsW; cell division protein FtsW
D Toce_1690 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D Toce_0959 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Toce_1395 cell division protein ZapA K09888 zapA; cell division protein ZapA
D Toce_1786 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Toce_1795 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Toce_0744 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Toce_0745 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Toce_0746 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Toce_1009 DivIVA domain protein K04074 divIVA; cell division initiation protein
D Toce_1007 protein of unknown function DUF552 K09772 sepF; cell division inhibitor SepF
D Toce_0740 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Toce_2012 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Toce_0741 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D Toce_0742 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D Toce_0747 cell elongation-specific peptidoglycan biosynthesis regulator RodA K05837 rodA; rod shape determining protein RodA
D Toce_2276 chromosome segregation ATPase K03496 parA; chromosome partitioning protein
D Toce_2275 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Toce_2277 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Toce_2279 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Toce_2278 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Toce_1086 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D Toce_1271 tyrosine recombinase XerD subunit K04763 xerD; integrase/recombinase XerD
D Toce_1087 tyrosine recombinase XerC K04763 xerD; integrase/recombinase XerD
D Toce_1299 integrase family protein K04763 xerD; integrase/recombinase XerD
D Toce_0865 protein of unknown function DUF199 K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:toc03400]
D Toce_0221 methylated-DNA/protein-cysteinemethyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Toce_1640 8-oxoguanine DNA glycosylase domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D Toce_1511 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Toce_0762 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Toce_1229 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Toce_1191 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Toce_0259 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Toce_1512 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D Toce_1366 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Toce_1757 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Toce_1653 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Toce_1670 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Toce_1671 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D Toce_1448 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Toce_1758 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Toce_0111 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Toce_0112 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Toce_0147 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Toce_1023 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Toce_0099 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Toce_1189 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Toce_1392 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D Toce_1188 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Toce_1310 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Toce_1309 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Toce_0868 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_0096 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Toce_1242 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D Toce_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Toce_0896 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Toce_0014 DNA polymerase III gamma/tau subunits K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Toce_2148 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Toce_2256 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Toce_0373 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D Toce_1215 RecA protein K03553 recA; recombination protein RecA
D Toce_1381 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Toce_1380 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Toce_1382 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Toce_1025 transcriptional regulator, TrmB K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Toce_1213 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
D Toce_1214 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D Toce_2122 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Toce_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D Toce_1038 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Toce_0924 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Toce_2146 DNA replication and repair protein RecR K06187 recR; recombination protein RecR
D Toce_1302 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Toce_0074 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Toce_0248 DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku
D Toce_0250 DNA polymerase LigD, polymerase domain protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Toce_0249 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Toce_0008 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Toce_0007 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Toce_1085 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D Toce_0104 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta
D Toce_0463 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Toce_1181 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Toce_1394 PHP domain protein K02347 polX; DNA polymerase (family X)
D Toce_2133 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Toce_1235 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:toc03029]
D Toce_1237 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D Toce_1404 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Toce_1256 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D Toce_0117 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Toce_2107 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Toce_2128 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Toce_0116 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Toce_1389 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Toce_0772 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Toce_1358 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Toce_0822 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D Toce_2184 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Toce_0656 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Toce_0657 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Toce_0655 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Toce_0826 protein of unknown function DUF155 K23499 RMND1; required for meiotic nuclear division protein 1
D Toce_2256 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Toce_0909 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Toce_0908 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Toce_0278 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Toce_0277 Chaperonin Cpn10 K04078 groES; chaperonin GroES
D Toce_0910 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Toce_1465 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Toce_1130 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Toce_2282 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:toc02000]
D Toce_1645 ABC transporter related protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Toce_1646 ABC transporter related protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Toce_1673 ABC transporter related protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D Toce_1672 ABC transporter related protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D Toce_0193 extracellular solute-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D Toce_0194 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D Toce_0195 ABC transporter related protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Toce_2240 Substrate-binding region of ABC-type glycine betaine transport system K15553 ssuA; sulfonate transport system substrate-binding protein
D Toce_2239 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Toce_0090 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D Toce_0092 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D Toce_0091 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D Toce_0093 ABC transporter related protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D Toce_2189 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Toce_0224 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Toce_2188 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Toce_0226 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Toce_2187 glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Toce_0225 glycine betaine/L-proline ABC transporter, ATPase subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Toce_1346 extracellular solute-binding protein family 3 K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Toce_1613 extracellular solute-binding protein family 3 K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D Toce_1344 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Toce_1612 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D Toce_1345 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Toce_1611 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Toce_2238 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D Toce_1806 carbohydrate ABC transporter ATP-binding protein, CUT1 family K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Toce_1744 carbohydrate ABC transporter substrate-binding protein, CUT1 family K10236 thuE; trehalose/maltose transport system substrate-binding protein
D Toce_1745 carbohydrate ABC transporter membrane protein 1, CUT1 family K10237 thuF; trehalose/maltose transport system permease protein
D Toce_1746 carbohydrate ABC transporter membrane protein 2, CUT1 family K10238 thuG; trehalose/maltose transport system permease protein
D Toce_1771 carbohydrate ABC transporter substrate-binding protein, CUT1 family K17311 treS; trehalose transport system substrate-binding protein
D Toce_1773 carbohydrate ABC transporter membrane protein 1, CUT1 family K17312 treT; trehalose transport system permease protein
D Toce_1772 carbohydrate ABC transporter membrane protein 2, CUT1 family K17313 treU; trehalose transport system permease protein
D Toce_1871 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Toce_1872 monosaccharide ABC transporter membrane protein, CUT2 family K10440 rbsC; ribose transport system permease protein
D Toce_1873 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Toce_0587 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins
D Toce_0589 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Toce_0590 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein
D Toce_0588 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D Toce_0849 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Toce_0354 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein
D Toce_0355 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein
D Toce_0356 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein
D Toce_0969 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Toce_0357 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Toce_1572 extracellular solute-binding protein family 3 K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D Toce_1571 amino acid ABC transporter membrane protein, PAAT family K17077 artQ; arginine/lysine/histidine transport system permease protein
D Toce_1570 amino acid ABC transporter ATP-binding protein, PAAT family K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D Toce_2192 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D Toce_2191 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Toce_2190 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein
D Toce_0658 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D Toce_0659 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D Toce_0660 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D Toce_0661 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D Toce_0662 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D Toce_0613 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Toce_0614 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Toce_0615 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Toce_0617 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Toce_0618 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Toce_1426 periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D Toce_1425 transport system permease protein K25027 btuC; cobalamin transport system permease protein
D Toce_1151 ABC transporter related protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D Toce_0061 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D Toce_0063 ABC-3 protein K09816 znuB; zinc transport system permease protein
D Toce_0062 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D Toce_0305 cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein
D Toce_0584 conserved hypothetical protein K02009 cbiN; cobalt/nickel transport protein
D Toce_0585 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Toce_0306 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D Toce_0583 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein
D Toce_0304 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D Toce_0586 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Toce_0307 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D Toce_0733 BioY protein K03523 bioY; biotin transport system substrate-specific component
D Toce_0351 conserved hypothetical protein K16927 cbrT; energy-coupling factor transport system substrate-specific component
D Toce_0151 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Toce_0349 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D Toce_0149 cobalt ABC transporter, ATPase subunit K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Toce_0150 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Toce_0350 ABC transporter related protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D Toce_0488 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D Toce_0489 ABC transporter related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D Toce_1690 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein
D Toce_1691 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D Toce_1738 protein of unknown function DUF990 K25154 evrC; viologen exporter family transport system permease protein
D Toce_1739 protein of unknown function DUF990 K25155 evrB; viologen exporter family transport system permease protein
D Toce_1740 ABC transporter related protein K25156 evrA; viologen exporter family transport system ATP-binding protein
D Toce_0393 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Toce_0877 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D Toce_0395 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Toce_0392 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Toce_0256 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Toce_0876 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Toce_1865 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Toce_2172 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Toce_2163 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Toce_2165 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Toce_1864 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Toce_2171 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Toce_1004 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D Toce_0776 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D Toce_0517 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Toce_1077 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D Toce_0450 major facilitator superfamily MFS_1 K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D Toce_2155 major facilitator superfamily MFS_1 K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D Toce_0730 major facilitator superfamily MFS_1 K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein
D Toce_1427 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Toce_0866 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D Toce_0265 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Toce_0340 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Toce_1982 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D Toce_0269 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Toce_0338 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Toce_1984 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D Toce_0267 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D Toce_0339 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D Toce_1983 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D Toce_1434 PTS system glucitol/sorbitol-specific IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D Toce_1435 Protein-N(pi)-phosphohistidine--sugarphosphotran sferase K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D Toce_1436 PTS system, glucitol/sorbitol-specific, IIC subunit K02783 srlA; glucitol/sorbitol PTS system EIIC component
D Toce_1446 putative PTS IIA-like nitrogen-regulatory protein PtsN K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D Toce_1444 PTS system D-arabitol-specific IIC component, Gat family (TC 4.A.5.1.2) K02775 gatC; galactitol PTS system EIIC component
D Toce_1901 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_1905 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_0294 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_0564 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Toce_1902 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component
D Toce_0300 PTS system IID component, Man family (TC 4.A.6) K02796 manZ; mannose PTS system EIID component
D Toce_0295 Protein-N(pi)-phosphohistidine--sugarphosphotran sferase K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203]
D Toce_1900 PTS system sorbose subfamily IIB component K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203]
D Toce_1904 PTS system sorbose subfamily IIB component K17465 dgaB; D-glucosaminate PTS system EIIB component [EC:2.7.1.203]
D Toce_1903 phosphotransferase system PTS sorbose-specific IIC subunit K17466 dgaC; D-glucosaminate PTS system EIIC component
D Toce_0777 formate/nitrite transporter K21993 fdhC; formate transporter
D Toce_2259 MscS Mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel
D Toce_0857 magnesium transporter K06213 mgtE; magnesium transporter
D Toce_0858 magnesium transporter K06213 mgtE; magnesium transporter
D Toce_1106 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Toce_1107 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Toce_1847 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D Toce_0444 CrcB protein K06199 crcB; fluoride exporter
D Toce_0445 camphor resistance protein CrcB K06199 crcB; fluoride exporter
D Toce_0547 microcompartments protein K27260 pduA; bacterial microcompartment shell protein
D Toce_1934 amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) K20265 gadC; glutamate:GABA antiporter
D Toce_2203 spore germination protein K06311 yndE; spore germination protein
D Toce_1461 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family
D Toce_1999 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family
D Toce_2211 protein of unknown function DUF6 transmembrane K08978 TC.BAT1; bacterial/archaeal transporter family protein
D Toce_2095 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D Toce_0647 predicted D-glycerate permease (TC 2.A.8.1.6) K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D Toce_0652 2-keto-3-deoxygluconate permease (TC 2.A.10.1.1) K02526 kdgT; 2-keto-3-deoxygluconate permease
D Toce_1843 Na+/solute symporter K14392 panF; sodium/pantothenate symporter
D Toce_0461 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D Toce_1490 Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family
D Toce_1788 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Toce_1401 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D Toce_1400 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Toce_1399 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D Toce_2052 uracil-xanthine permease K02824 uraA; uracil permease
D Toce_1885 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D Toce_0381 benzoate transporter K05782 benE; benzoate membrane transport protein
D Toce_2069 Chromate transporter K07240 chrA; chromate transporter
D Toce_2070 Chromate transporter K07240 chrA; chromate transporter
D Toce_1460 Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter
D Toce_0186 arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1) K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Toce_0185 arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1) K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Toce_1973 arsenical-resistance protein K03325 ACR3; arsenite transporter
D Toce_0102 stage V sporulation protein B K06409 spoVB; stage V sporulation protein B
D Toce_1808 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Toce_2144 Lysine exporter protein (LYSE/YGGA) K11249 eamB; cysteine/O-acetylserine efflux protein
D Toce_1895 conserved hypothetical protein K23675 fmnP; riboflavin transporter
D Toce_1717 proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter
D Toce_1996 conserved hypothetical protein K16788 niaX; niacin transporter
D Toce_0951 spore cortex peptidoglycan biosynthesis regulator SpoVE K03588 ftsW; cell division protein FtsW
D Toce_2132 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D Toce_1828 glutaconyl-CoA decarboxylase beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Toce_1527 sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D Toce_1193 Conserved carboxylase region K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D Toce_1196 propionyl-CoA carboxylase carboxyltransferase subunit K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D Toce_1831 propionyl-CoA carboxylase carboxyltransferase subunit K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D Toce_1194 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Toce_1829 biotin/lipoyl attachment domain-containing protein K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D Toce_1195 sodium pump decarboxylase gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D Toce_1830 sodium pump decarboxylase, gamma subunit K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D Toce_0629 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D Toce_0715 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D Toce_0500 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Toce_0499 lipopolysaccharide biosynthesis protein K19420 epsA; protein tyrosine kinase modulator
D Toce_1713 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Toce_0172 FeoA family protein K04758 feoA; ferrous iron transport protein A
D Toce_0169 small GTP-binding protein K04759 feoB; ferrous iron transport protein B
D Toce_0170 Ferrous iron transport protein B domain protein K04759 feoB; ferrous iron transport protein B
D Toce_1243 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:toc02044]
D Toce_1334 conserved hypothetical protein K02456 gspG; general secretion pathway protein G
D Toce_1927 N-terminal methylation K02456 gspG; general secretion pathway protein G
D Toce_1926 type 4 prepilin peptidase 1 K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Toce_1336 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D Toce_1930 type II secretion system protein E (GspE) K02652 pilB; type IV pilus assembly protein PilB
D Toce_1928 Type II secretion system F domain protein K02653 pilC; type IV pilus assembly protein PilC
D Toce_1335 Type II secretion system F domain protein K02653 pilC; type IV pilus assembly protein PilC
D Toce_1922 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Toce_1329 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Toce_1921 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN
D Toce_1328 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN
D Toce_1929 twitching motility protein K02669 pilT; twitching motility protein PilT
D Toce_0415 SAF domain protein K02279 cpaB; pilus assembly protein CpaB
D Toce_0409 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Toce_0411 Type II secretion system F domain protein K12510 tadB; tight adherence protein B
D Toce_1008 protein of unknown function YGGT K02221 yggT; YggT family protein
D Toce_0773 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA
D Toce_2063 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D Toce_0895 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D Toce_0843 beta-lactamase domain protein K02238 comEC; competence protein ComEC
D Toce_1330 Late competence development protein ComFB K02241 comFB; competence protein ComFB
D Toce_1117 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Toce_1116 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Toce_1887 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein
D Toce_1095 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Toce_1097 Flagellar assembly protein FliH/Type III secretion system HrpE K02411 fliH; flagellar assembly protein FliH
D Toce_1098 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Toce_1110 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D Toce_1113 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Toce_1114 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Toce_1115 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Toce_0426 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D Toce_1709 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Toce_1371 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Toce_2105 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D Toce_1370 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D Toce_1848 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Toce_0138 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Toce_1065 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Toce_1063 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Toce_1374 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Toce_2282 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:toc02042]
D Toce_1530 C4-dicarboxylate transporter/malic acid transport protein K11041 eta; exfoliative toxin A/B
C 02022 Two-component system [BR:toc02022]
D Toce_0968 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Toce_0967 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Toce_1454 multi-sensor signal transduction histidine kinase K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3]
D Toce_1455 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD
D Toce_2235 multi-sensor signal transduction histidine kinase K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3]
D Toce_2236 two component transcriptional regulator, winged helix family K07668 vicR; two-component system, OmpR family, response regulator VicR
D Toce_0369 DegS sensor signal transduction histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3]
D Toce_0370 two component transcriptional regulator, LuxR family K07692 degU; two-component system, NarL family, response regulator DegU
D Toce_0199 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F
D Toce_1300 sporulation transcriptional activator Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D Toce_0207 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Toce_0208 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D Toce_1845 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC
D Toce_1121 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Toce_1111 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Toce_0472 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Toce_0459 integral membrane sensor signal transduction histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3]
D Toce_0460 response regulator receiver protein K07719 glnL; two-component system, response regulator GlnL
D Toce_0546 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
D Toce_1742 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN
C 02035 Bacterial motility proteins [BR:toc02035]
D Toce_1121 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Toce_0470 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Toce_1122 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Toce_1123 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D Toce_1124 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Toce_1159 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Toce_0472 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Toce_1111 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Toce_0468 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Toce_0469 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D Toce_1097 Flagellar assembly protein FliH/Type III secretion system HrpE K02411 fliH; flagellar assembly protein FliH
D Toce_1098 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Toce_1099 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D Toce_1113 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Toce_1114 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Toce_1115 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Toce_1117 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Toce_1116 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D Toce_1096 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Toce_1109 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Toce_1110 CheC, inhibitor of MCP methylation / FliN fusion protein K02417 fliN; flagellar motor switch protein FliN
D Toce_1095 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Toce_1108 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Toce_1094 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D Toce_1101 Flagellar hook-length control protein-like, C-terminal domain protein K02414 fliK; flagellar hook-length control protein FliK
D Toce_1092 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Toce_1093 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Toce_1102 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Toce_2011 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D Toce_2010 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Toce_2009 Flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D Toce_1104 fagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE
D Toce_1597 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D Toce_1596 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D Toce_1586 flagellin domain protein K02406 fliC; flagellin
D Toce_1579 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D Toce_1578 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Toce_1125 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily K02405 fliA; RNA polymerase sigma factor FliA
D Toce_1106 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Toce_1107 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D Toce_1594 protein of unknown function DUF180 K13626 fliW; flagellar assembly factor FliW
D Toce_1599 Anti-sigma-28 factor FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D Toce_1580 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG
D Toce_1100 MgtE intracellular region K02383 flbB; flagellar protein FlbB
D Toce_1105 flagellar FlbD family protein K02385 flbD; flagellar protein FlbD
D Toce_1118 flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D Toce_1119 cobyrinic acid ac-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG
D Toce_1929 twitching motility protein K02669 pilT; twitching motility protein PilT
D Toce_1336 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D Toce_1930 type II secretion system protein E (GspE) K02652 pilB; type IV pilus assembly protein PilB
D Toce_1928 Type II secretion system F domain protein K02653 pilC; type IV pilus assembly protein PilC
D Toce_1335 Type II secretion system F domain protein K02653 pilC; type IV pilus assembly protein PilC
D Toce_1926 type 4 prepilin peptidase 1 K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Toce_1921 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN
D Toce_1328 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN
D Toce_1922 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Toce_1329 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Toce_0415 SAF domain protein K02279 cpaB; pilus assembly protein CpaB
D Toce_0409 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:toc04812]
D Toce_2078 AMMECR1 domain protein K06990 MEMO1; MEMO1 family protein
D Toce_0740 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Toce_2012 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Toce_0421 plasmid segregation actin-type ATPase ParM K18640 parM; plasmid segregation protein ParM
D Toce_0959 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Toce_0958 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Toce_0744 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Toce_0745 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Toce_0746 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Toce_2276 chromosome segregation ATPase K03496 parA; chromosome partitioning protein
D Toce_2275 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Toce_2277 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:toc04147]
D Toce_1850 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Toce_1855 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Toce_2092 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Toce_0871 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Toce_1513 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D Toce_0278 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Toce_0909 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D Toce_2129 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Toce_0117 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Toce_2107 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Toce_0454 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Toce_0914 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Toce_1441 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D Toce_0139 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Toce_1365 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Toce_0157 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Toce_0156 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Toce_2208 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Toce_0322 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Toce_1498 IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Toce_0808 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_2027 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1429 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Toce_1852 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:toc02048]
D Toce_0074 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Toce_0075 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2
D Toce_0073 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Toce_0079 CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D Toce_0529 CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D Toce_0068 CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D Toce_0070 CRISPR-associated protein, Csh2 family K19115 csh2; CRISPR-associated protein Csh2
D Toce_0071 CRISPR-associated protein Cas5 K19116 cas5h; CRISPR-associated protein Cas5h
D Toce_0524 CRISPR-associated protein, Csm1 family K07016 csm1; CRISPR-associated protein Csm1
D Toce_0525 CRISPR-associated protein, Csm2 family K19138 csm2; CRISPR-associated protein Csm2
D Toce_0526 CRISPR-associated protein, Csm3 family K09002 csm3; CRISPR-associated protein Csm3
D Toce_0527 CRISPR-associated RAMP protein, Csm4 family K19139 csm4; CRISPR-associated protein Csm4
D Toce_0528 CRISPR-associated RAMP protein, Csm5 family K19140 csm5; CRISPR-associated protein Csm5
D Toce_0530 CRISPR-associated protein, MJ1666 family K19143 csx1; CRISPR-associated protein Csx1
D Toce_0531 CRISPR-associated protein, Csx3 family K19144 csx3; CRISPR-associated protein Csx3
D Toce_1948 Type III site-specific deoxyribonuclease K01156 res; type III restriction enzyme [EC:3.1.21.5]
D Toce_1947 Site-specific DNA-methyltransferase (adenine-specific) K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Toce_1576 DNA methylase N-4/N-6 domain protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D Toce_0520 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D Toce_1913 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D Toce_0521 transcriptional regulator/antitoxin, MazE K07172 mazE; antitoxin MazE
D Toce_1914 transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D Toce_1581 plasmid stabilization system K06218 relE; mRNA interferase RelE/StbE
D Toce_1582 prevent-host-death family protein K18923 stbD; antitoxin StbD
D Toce_0438 protein of unknown function UPF0150 K18843 hicB; antitoxin HicB
D Toce_1751 death-on-curing family protein K07341 doc; death on curing protein
D Toce_0959 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Toce_0740 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Toce_2012 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Toce_1465 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Toce_1130 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:toc01504]
D Toce_1788 Na+/H+ antiporter NhaC K18218 tet35; tetracycline resistance efflux pump
D Toce_0330 peptidase M56 BlaR1 K02172 blaR1; bla regulator protein blaR1
D Toce_0329 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Toce_0645 Serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:toc00537]
D Toce_1513 Membrane dipeptidase K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:toc03100]
D Toce_R0043 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Toce_R0024 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Toce_R0045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Toce_R0040 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Toce_R0058 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Toce_R0059 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Toce_R0008 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Toce_R0020 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Toce_R0031 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Toce_R0028 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Toce_R0038 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Toce_R0046 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Toce_R0063 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Toce_R0048 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Toce_R0047 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Toce_R0029 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Toce_R0062 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Toce_R0041 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Toce_R0053 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Toce_R0039 tRNA-His K14226 tRNA-His; tRNA His
D Toce_R0023 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Toce_R0027 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0033 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Toce_R0037 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Toce_R0014 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Toce_R0064 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Toce_R0049 tRNA-Met K14230 tRNA-Met; tRNA Met
D Toce_R0050 tRNA-Met K14230 tRNA-Met; tRNA Met
D Toce_R0052 tRNA-Met K14230 tRNA-Met; tRNA Met
D Toce_R0017 tRNA-Met K14230 tRNA-Met; tRNA Met
D Toce_R0030 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Toce_R0012 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Toce_R0042 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Toce_R0013 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Toce_R0057 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Toce_R0061 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Toce_R0056 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Toce_R0060 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Toce_R0016 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Toce_R0007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Toce_R0051 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Toce_R0018 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Toce_R0054 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Toce_R0015 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Toce_R0044 tRNA-Val K14237 tRNA-Val; tRNA Val
D Toce_R0026 tRNA-Val K14237 tRNA-Val; tRNA Val
D Toce_R0032 tRNA-Val K14237 tRNA-Val; tRNA Val
D Toce_R0010 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D Toce_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Toce_R0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Toce_R0025 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Toce_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Toce_R0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Toce_R0022 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Toce_R0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Toce_R0006 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Toce_R0021 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Toce_R0055 RNA component of signal recognition particle K01983 ffs; SRP RNA
D Toce_R0011 RNA component of RNaseP K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Toce_0654 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D Toce_1432 dehydrogenase E1 component K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D Toce_2031 pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D Toce_2030 Transketolase central region K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D Toce_1431 Transketolase central region K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D Toce_2079 Shikimate/quinate 5-dehydrogenase K14330 K14330; fatty aldehyde-generating acyl-ACP reductase [EC:1.2.1.80]
D Toce_1564 indolepyruvate ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D Toce_1563 Indolepyruvate ferredoxin oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D Toce_0452 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K19070 oorA; oxalate oxidoreductase subunit alpha [EC:1.2.7.10]
D Toce_0451 pyruvate ferredoxin oxidoreductase, beta subunit K19071 oorB; oxalate oxidoreductase subunit beta [EC:1.2.7.10]
D Toce_0453 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit K19072 oorD; oxalate oxidoreductase subunit delta [EC:1.2.7.10]
D Toce_0231 NAD/NADP octopine/nopaline dehydrogenase K04940 odh; opine dehydrogenase [EC:1.5.1.28]
D Toce_0258 NADH:flavin oxidoreductase/NADH oxidase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1]
D Toce_0695 NAD(P)-dependent iron-only hydrogenase iron-sulfur protein K17992 hndB; NADP-reducing hydrogenase subunit HndB [EC:1.12.1.3]
D Toce_0693 NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein K18330 hndA; NADP-reducing hydrogenase subunit HndA [EC:1.12.1.3]
D Toce_0696 NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3]
D Toce_0697 NAD(P)-dependent iron-only hydrogenase catalytic subunit K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3]
D Toce_1860 Superoxide reductase K05919 dfx; superoxide reductase [EC:1.15.1.2]
D Toce_1552 Bilirubin oxidase K06324 cotA; spore coat protein A, manganese oxidase [EC:1.16.3.3]
D Toce_0575 Protein-tyrosine phosphatase, low molecular weight K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Toce_1619 glycine reductase complex selenoprotein A K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D Toce_1620 glycine reductase complex selenoprotein A K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D Toce_1621 Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits K10671 grdE; glycine reductase complex component B subunit alpha and beta [EC:1.21.4.2]
D Toce_1618 selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2]
D Toce_1617 selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2]
D Toce_1680 putative D-proline reductase, PrdB subunit K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2]
D Toce_1615 fatty acid synthesis plsX protein K21576 grdD; glycine/sarcosine/betaine reductase complex component C subunit alpha [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D Toce_1616 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III K21577 grdC; glycine/sarcosine/betaine reductase complex component C subunit beta [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D Toce_2077 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Toce_1991 anaerobic ribonucleoside-triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Toce_0840 Radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Toce_0803 Protein of unknown function DUF166 K22882 K22882; thymidylate synthase [EC:2.1.1.-]
D Toce_1488 conserved hypothetical protein K21399 ortA; 2-amino-4-ketopentanoate thiolase alpha subunit [EC:2.3.1.263]
D Toce_1487 Pyridoxal-5'-phosphate-dependent protein beta subunit K21400 ortB; 2-amino-4-ketopentanoate thiolase beta subunit [EC:2.3.1.263]
D Toce_1931 Acetyltransferase, GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D Toce_1644 protein of unknown function DUF43 K07057 bpsA; N4-bis(aminopropyl)spermidine synthase [EC:2.5.1.128]
D Toce_0387 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D Toce_0235 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Toce_0716 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Toce_0559 ATP/cobalamin adenosyltransferase K27270 pduO; corrinoid adenosyltransferase [EC:2.5.1.-]
D Toce_0687 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Toce_0653 type III effector Hrp-dependent outers domain protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D Toce_1037 DAK2 domain fusion protein YloV K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D Toce_0927 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D Toce_1970 protein of unknown function DUF147 K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D Toce_1268 putative anti-sigma regulatory factor, serine/threonine protein kinase K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1]
D Toce_0845 Hpr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D Toce_2124 ATP:guanido phosphotransferase K19405 mcsB; protein arginine kinase [EC:2.7.14.1]
D Toce_0883 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D Toce_2099 protein serine/threonine phosphatase K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16]
D Toce_0495 Protein-tyrosine-phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D Toce_1206 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Toce_1337 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D Toce_2253 phosphoesterase RecJ domain protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D Toce_0920 7TM receptor with intracellular metal dependent phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D Toce_0029 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Toce_0539 Alpha-mannosidase K15524 mngB; 2-O-(6-phospho-alpha-D-mannosyl)-D-glycerate hydrolase [EC:3.2.1.-]
D Toce_0475 N-acetylmuramoyl-L-alanine amidase family 2 K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Toce_1026 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Toce_0019 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Toce_2160 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Toce_0574 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Toce_1456 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D Toce_1804 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D Toce_2067 protein tyrosine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2]
D Toce_1736 Radical SAM domain protein K03716 splB; spore photoproduct lyase [EC:4.1.99.14]
D Toce_1916 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Toce_1521 Protein of unknown function DUF2600 K16188 ytpB; tetraprenyl-beta-curcumene synthase [EC:4.2.3.130]
D Toce_0386 PP-loop domain protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D Toce_0388 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D Toce_0042 cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D Toce_0699 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D Toce_0698 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D Toce_0703 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D Toce_1342 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Toce_0881 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Toce_1727 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D Toce_1482 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D Toce_0552 Diol/glycerol dehydratase reactivating factor large subunit K27264 pduG; propanediol dehydratase-reactivating factor large subunit
D Toce_0553 conserved hypothetical protein K27265 pduH; propanediol dehydratase-reactivating factor small subunit
C 99982 Energy metabolism
D Toce_2086 Rubrerythrin K19824 fprB; rubrerythrin
D Toce_0209 ferredoxin K05337 fer; ferredoxin
D Toce_0700 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D Toce_0701 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D Toce_0702 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D Toce_1131 FeS cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins
D Toce_0538 FeS cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins
D Toce_1265 protein of unknown function DUF1458 K09165 K09165; dodecin
C 99983 Lipid metabolism
D Toce_1054 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D Toce_0576 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D Toce_1678 D-proline reductase (dithiol) K10796 prdE; D-proline reductase (dithiol)-stabilizing protein PrdE
D Toce_0556 ethanolamine utilization protein EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ
D Toce_1006 alanine racemase domain protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D Toce_0757 cell wall hydrolase SleB K01449 cwlJ; cell wall hydrolase
C 99987 Cofactor metabolism
D Toce_1529 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D Toce_0839 Fe-S cluster domain protein K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D Toce_1450 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D Toce_1867 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein
D Toce_0561 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K27271 pduS; cobalamin reductase
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Toce_1437 Glucitol operon activator K02466 gutM; glucitol operon activator protein
D Toce_1021 protein of unknown function DUF370 K09777 remA; extracellular matrix regulatory protein A
D Toce_0006 conserved hypothetical protein K24648 remB; extracellular matrix regulatory protein B
C 99974 Translation
D Toce_0109 RNA binding S1 domain protein K07571 K07571; S1 RNA binding domain protein
C 99975 Protein processing
D Toce_2125 UvrB/UvrC protein K19411 mcsA; protein arginine kinase activator
D Toce_1768 trigger factor K03545 tig; trigger factor
D Toce_1818 SsrA-binding protein K03664 smpB; SsrA-binding protein
D Toce_0173 AIR synthase related protein domain protein K04655 hypE; hydrogenase expression/formation protein HypE
D Toce_1082 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D Toce_0739 DNA replication and repair protein RadC K03630 radC; DNA repair protein RadC
D Toce_1950 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC
D Toce_1073 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D Toce_1084 DNA protecting protein DprA K04096 smf; DNA processing protein
D Toce_0666 Recombination protein MgsA K07478 ycaJ; putative ATPase
D Toce_0191 transposase IS3/IS911 family protein K07483 K07483; transposase
D Toce_1956 transposase IS3/IS911 family protein K07483 K07483; transposase
D Toce_1665 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D Toce_0219 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D Toce_0518 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D Toce_0078 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase
D Toce_1584 transposase mutator type K07493 K07493; putative transposase
D Toce_0673 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D Toce_0533 Integrase catalytic region K07497 K07497; putative transposase
D Toce_0190 Integrase catalytic region K07497 K07497; putative transposase
D Toce_2036 Integrase catalytic region K07497 K07497; putative transposase
D Toce_1957 Integrase catalytic region K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D Toce_2147 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Toce_2168 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D Toce_1477 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D Toce_0361 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D Toce_1562 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D Toce_1451 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D Toce_0160 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D Toce_0161 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D Toce_1835 YidE/YbjL duplication K07085 K07085; putative transport protein
C 99978 Cell growth
D Toce_0801 cobyrinic acid a,c-diamide synthase K07321 cooC; CO dehydrogenase maturation factor
D Toce_0809 cobyrinic acid a,c-diamide synthase K07321 cooC; CO dehydrogenase maturation factor
D Toce_2142 pro-sigmaK processing inhibitor BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery
D Toce_0727 conserved hypothetical protein K06333 cotJB; spore coat protein JB
D Toce_0726 manganese containing catalase K06334 cotJC; spore coat protein JC
D Toce_2281 single-stranded nucleic acid binding R3H domain protein K06346 jag; spoIIIJ-associated protein
D Toce_1840 urea amidolyase related protein K06350 kipA; antagonist of KipI
D Toce_1841 Allophanate hydrolase subunit 1 K06351 kipI; inhibitor of KinA
D Toce_0879 nucleoside recognition domain protein K06373 spmA; spore maturation protein A
D Toce_0880 nucleoside recognition domain protein K06374 spmB; spore maturation protein B
D Toce_1269 anti-sigma-factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D Toce_0925 protein of unknown function DUF95 transmembrane K06384 spoIIM; stage II sporulation protein M
D Toce_1272 stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M
D Toce_0901 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P
D Toce_0972 stage II sporulation protein P K06385 spoIIP; stage II sporulation protein P
D Toce_2201 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R
D Toce_1322 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA
D Toce_1321 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB
D Toce_1320 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC
D Toce_1319 stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD
D Toce_1318 stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE
D Toce_1317 stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF
D Toce_1316 stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG
D Toce_1315 conserved hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH
D Toce_0980 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A
D Toce_1264 stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC
D Toce_1263 stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD
D Toce_1262 stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE
D Toce_0047 SpoVG family protein K06412 spoVG; stage V sporulation protein G
D Toce_1185 stage V sporulation protein K K06413 spoVK; stage V sporulation protein K
D Toce_1207 Stage V sporulation protein S K06416 spoVS; stage V sporulation protein S
D Toce_1061 Stage V sporulation protein S K06416 spoVS; stage V sporulation protein S
D Toce_1039 small acid-soluble spore protein alpha/beta type K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP)
D Toce_2198 conserved hypothetical protein K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP)
D Toce_1415 small, acid-soluble spore protein, alpha/be K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP)
D Toce_0234 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor)
D Toce_1479 small, acid-soluble spore protein I K06426 sspI; small acid-soluble spore protein I (minor)
D Toce_0034 sporulation peptidase YabG K06436 yabG; spore coat assemly protein
D Toce_0918 sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein
D Toce_2202 germination protein, Ger(x)C family K06297 gerKC; spore germination protein KC
D Toce_1784 Lipoprotein LpqB, GerMN domain protein K06298 gerM; germination protein M
D Toce_0098 Lipoprotein LpqB, GerMN domain protein K06298 gerM; germination protein M
D Toce_2204 GerA spore germination protein K06310 yndD; spore germination protein
D Toce_0758 germination protein YpeB K06313 ypeB; spore germination protein
C 99993 Cell motility
C 99995 Signaling proteins
D Toce_0205 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D Toce_2057 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D Toce_0919 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
C 99992 Structural proteins
D Toce_1866 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Toce_2164 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Toce_2169 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Toce_2170 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D Toce_0548 microcompartments protein K27263 pduB; bacterial microcompartment shell protein
D Toce_0554 microcompartments protein K27267 pduK; bacterial microcompartment shell protein
D Toce_0562 microcompartments protein K27272 pduT; bacterial microcompartment shell protein
C 99994 Others
D Toce_0970 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D Toce_0268 CutC family protein K06201 cutC; copper homeostasis protein
D Toce_0471 hemerythrin-like metal-binding protein K07216 hr; hemerythrin
D Toce_0273 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Toce_1628 protein of unknown function DUF1648 K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Toce_0847 PHP domain protein K04477 ycdX; putative hydrolase
D Toce_0862 histidinol phosphate phosphatase HisJ family K04477 ycdX; putative hydrolase
D Toce_0820 DEAD/DEAH box helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D Toce_1480 export-related chaperone CsaA K06878 K06878; tRNA-binding protein
D Toce_2137 Patatin K07001 K07001; NTE family protein
D Toce_1044 Patatin K07001 K07001; NTE family protein
D Toce_1648 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D Toce_0279 conserved hypothetical protein K04750 phnB; PhnB protein
D Toce_1606 LemA family protein K03744 lemA; LemA protein
D Toce_0899 membrane protein of unknown function K08972 K08972; putative membrane protein
D Toce_0718 Protein of unknown function DUF2078, membrane K08982 K08982; putative membrane protein
C 99997 Function unknown
D Toce_0938 Radical SAM domain protein K06871 K06871; uncharacterized protein
D Toce_1605 protein of unknown function DUF477 K06872 K06872; uncharacterized protein
D Toce_1734 conserved hypothetical protein K06888 K06888; uncharacterized protein
D Toce_1067 RNA-binding protein (KH domain) K06960 K06960; uncharacterized protein
D Toce_2110 protein of unknown function DUF901 K06962 K06962; uncharacterized protein
D Toce_0016 peptidase membrane zinc metallopeptidase putative K06973 K06973; uncharacterized protein
D Toce_0333 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein K07005 K07005; uncharacterized protein
D Toce_0566 hypothetical protein K07075 K07075; uncharacterized protein
D Toce_0514 aldo/keto reductase K07079 K07079; uncharacterized protein
D Toce_1607 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein
D Toce_1976 permease K07089 K07089; uncharacterized protein
D Toce_1781 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Toce_1496 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D Toce_1994 3H domain protein K07105 K07105; uncharacterized protein
D Toce_0084 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D Toce_0085 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D Toce_2249 HI0933 family protein K07137 K07137; uncharacterized protein
D Toce_1884 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K07138 K07138; uncharacterized protein
D Toce_2222 4Fe-4S ferredoxin iron-sulfur binding domain protein K07138 K07138; uncharacterized protein
D Toce_2270 protein of unknown function DUF554 K07150 K07150; uncharacterized protein
D Toce_2283 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D Toce_0916 hypothetical protein K09117 K09117; uncharacterized protein
D Toce_0626 conserved hypothetical protein K09126 K09126; uncharacterized protein
D Toce_0577 putative PAS/PAC sensor protein K09155 K09155; uncharacterized protein
D Toce_1493 protein of unknown function DUF1284 K09706 K09706; uncharacterized protein
D Toce_1028 protein of unknown function DUF116 K09729 K09729; uncharacterized protein
D Toce_1539 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D Toce_1126 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D Toce_2131 protein of unknown function DUF503 K09764 K09764; uncharacterized protein
D Toce_0013 protein of unknown function DUF327 K09770 K09770; uncharacterized protein
D Toce_0032 protein of unknown function DUF458 K09776 K09776; uncharacterized protein
D Toce_1064 putative helix-turn-helix protein YlxM/p13 family protein K09787 K09787; uncharacterized protein
D Toce_0973 conserved hypothetical protein K05739 seaA; uncharacterized protein
D Toce_0821 conserved hypothetical protein K07502 yprB; uncharacterized protein
D Toce_0764 protein of unknown function DUF464 K07584 ysxB; uncharacterized protein
D Toce_1239 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 28, 2024