+D GENES KO #

  KEGG Orthology (KO) - Treponema pallidum subsp. pallidum Mexico A

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:tpo00010] D TPAMA_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPAMA_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TPAMA_0108 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPAMA_0542 pfp; diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D TPAMA_0662 fbaB; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPAMA_0537 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TPAMA_0844 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPAMA_0538 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TPAMA_0168 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TPAMA_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPAMA_0746 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D TPAMA_0939 pyruvate synthase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TPAMA_0642 phosphohexose mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPAMA_0122 pckG; phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] C 00020 Citrate cycle (TCA cycle) [PATH:tpo00020] D TPAMA_0122 pckG; phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D TPAMA_0939 pyruvate synthase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:tpo00030] D TPAMA_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TPAMA_0478 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D TPAMA_0477 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D TPAMA_0331 gnd; phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D TPAMA_0945 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D TPAMA_0560 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D TPAMA_0616 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D TPAMA_0264 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D TPAMA_0642 phosphohexose mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPAMA_0294 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TPAMA_0568 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D TPAMA_0662 fbaB; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPAMA_0108 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPAMA_0542 pfp; diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] C 00040 Pentose and glucuronate interconversions D TPAMA_0945 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] C 00051 Fructose and mannose metabolism [PATH:tpo00051] D TPAMA_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPAMA_0108 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPAMA_0542 pfp; diphosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] D TPAMA_0662 fbaB; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPAMA_0537 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:tpo00052] D TPAMA_0418 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TPAMA_0642 phosphohexose mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPAMA_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPAMA_0108 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00053 Ascorbate and aldarate metabolism C 00500 Starch and sucrose metabolism [PATH:tpo00500] D TPAMA_0358 hypothetical protein K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D TPAMA_0642 phosphohexose mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPAMA_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPAMA_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:tpo00520] D TPAMA_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPAMA_0861 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TPAMA_0029 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TPAMA_0090 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TPAMA_0642 phosphohexose mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPAMA_0418 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TPAMA_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00620 Pyruvate metabolism [PATH:tpo00620] D TPAMA_0939 pyruvate synthase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D TPAMA_0476 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TPAMA_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPAMA_0037 ldhA; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D TPAMA_0056 oadA; oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D TPAMA_0057 oadB; oxaloacetate decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TPAMA_0055 oadG; oxaloacetate decarboxylase subunit gamma K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D TPAMA_0122 pckG; phosphoenolpyruvate carboxykinase (GTP) K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] D TPAMA_0746 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:tpo00630] D TPAMA_0554 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D TPAMA_0329 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TPAMA_0568 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] C 00640 Propanoate metabolism [PATH:tpo00640] D TPAMA_0476 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TPAMA_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] C 00650 Butanoate metabolism [PATH:tpo00650] D TPAMA_0057 oadB; oxaloacetate decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TPAMA_0939 pyruvate synthase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism D TPAMA_0537 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:tpo00190] D TPAMA_0426 ntpA1; two-sector ATPase, V(1) subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D TPAMA_0529 ntpA2; two-sector ATPase, V(1) subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D TPAMA_0427 ntpB1; two-sector ATPase, V(1) subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D TPAMA_0528 ntpB2; two-sector ATPase, V(1) subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D TPAMA_0428 ntpD1; two-sector ATPase, V(1) subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D TPAMA_0527 ntpD2; two-sector ATPase, V(1) subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D TPAMA_0424 ntpE; two-sector ATPase, V(1) subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D TPAMA_0530 hypothetical protein K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D TPAMA_0429 ntpI1; two-sector ATPase, V(0) subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D TPAMA_0533 ntpI2; two-sector ATPase, V(0) subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D TPAMA_0430 ntpK; two-sector ATPase, V(0) subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:tpo00680] D TPAMA_0329 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TPAMA_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPAMA_0662 fbaB; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D TPAMA_0108 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPAMA_0476 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D TPAMA_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPAMA_0168 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 00910 Nitrogen metabolism D TPAMA_0735 gltD; glutamate synthase (NADPH) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] C 00920 Sulfur metabolism D TPAMA_0436 DHH superfamily phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:tpo00061] D TPAMA_0808 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D TPAMA_0145 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation D TPAMA_0145 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism D TPAMA_0361 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:tpo00564] D TPAMA_1009 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D TPAMA_0361 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D TPAMA_0257 glpQ; glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D TPAMA_0602 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D TPAMA_0256 pgsA1; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D TPAMA_0730 pgsA2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:tpo00230] D TPAMA_0642 phosphohexose mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D TPAMA_0294 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D TPAMA_1039 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TPAMA_0104 ushA; bifunctional 5'-nucleotidase/UDP-sugar diphosphatase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TPAMA_0419 surE; acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TPAMA_0734 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D TPAMA_1010 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TPAMA_0438 HAM1 protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D TPAMA_0079 coxL; bifunctional aldehyde oxidase/xanthine dehydrogenase K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D TPAMA_1008 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPAMA_0053 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TPAMA_0485 putative adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D TPAMA_0595 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00240 Pyrimidine metabolism [PATH:tpo00240] D TPAMA_0099 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D TPAMA_1010 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TPAMA_0305 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D TPAMA_0342 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D TPAMA_0667 bifunctional phosphoribulokinase/uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D TPAMA_0104 ushA; bifunctional 5'-nucleotidase/UDP-sugar diphosphatase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TPAMA_0419 surE; acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TPAMA_1027 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D TPAMA_0448 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D TPAMA_1008 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPAMA_0053 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TPAMA_0274 dctD; dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D TPAMA_0354 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D TPAMA_0885 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TPAMA_1007 thyX; thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:tpo00250] D TPAMA_0223 pyridoxal phosphate-dependent aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D TPAMA_0556 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D TPAMA_0735 gltD; glutamate synthase (NADPH) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D TPAMA_0861 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] C 00260 Glycine, serine and threonine metabolism [PATH:tpo00260] D TPAMA_0329 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TPAMA_0168 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 00270 Cysteine and methionine metabolism [PATH:tpo00270] D TPAMA_0794 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D TPAMA_0170 nucleoside phosphorylase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D TPAMA_0223 pyridoxal phosphate-dependent aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00280 Valine, leucine and isoleucine degradation C 00290 Valine, leucine and isoleucine biosynthesis C 00300 Lysine biosynthesis [PATH:tpo00300] D TPAMA_0933 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TPAMA_0386 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation D TPAMA_0121 kamA; lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] C 00220 Arginine biosynthesis D TPAMA_0223 pyridoxal phosphate-dependent aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:tpo00330] D TPAMA_0797 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D TPAMA_0351 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TPAMA_0350 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D TPAMA_0223 pyridoxal phosphate-dependent aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism C 00350 Tyrosine metabolism D TPAMA_0223 pyridoxal phosphate-dependent aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00360 Phenylalanine metabolism D TPAMA_0223 pyridoxal phosphate-dependent aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00380 Tryptophan metabolism C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:tpo00400] D TPAMA_0223 pyridoxal phosphate-dependent aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism C 00430 Taurine and hypotaurine metabolism [PATH:tpo00430] D TPAMA_0094 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D TPAMA_0476 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:tpo00450] D TPAMA_0614 sufS; bifunctional cysteine desulfurase/selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D TPAMA_0814 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D TPAMA_0798 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:tpo00460] D TPAMA_0556 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D TPAMA_0329 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:tpo00470] D TPAMA_0681 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TPAMA_0670 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPAMA_0406 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D TPAMA_0903 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] C 00480 Glutathione metabolism [PATH:tpo00480] D TPAMA_0331 gnd; phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D TPAMA_0478 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis [PATH:tpo00550] D TPAMA_0029 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TPAMA_0090 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TPAMA_0341 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TPAMA_0903 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TPAMA_0933 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TPAMA_0670 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPAMA_0386 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TPAMA_0603 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TPAMA_0345 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TPAMA_0523 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TPAMA_0705 mrcA; bifunctional membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPAMA_0500 pbp1; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TPAMA_0760 pbp2; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TPAMA_0800 dacC; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TPAMA_0221 vanY; serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 00552 Teichoic acid biosynthesis [PATH:tpo00552] D TPAMA_0275 wecG; WecB/TagA/CpsF family glycosyl transferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:tpo00543] D TPAMA_0566 algI; alginate O-acetylation protein K19294 algI; alginate O-acetyltransferase complex protein AlgI B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:tpo00730] D TPAMA_0863 nifS; bifunctional cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPAMA_0559 thiI; thiamine biosynthesis ATP pyrophosphatase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D TPAMA_0824 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TPAMA_0518 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D TPAMA_0595 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:tpo00740] D TPAMA_0888 ribF; bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] C 00750 Vitamin B6 metabolism [PATH:tpo00750] D TPAMA_0115 thiD; phosphomethypyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] C 00760 Nicotinate and nicotinamide metabolism [PATH:tpo00760] D TPAMA_0628 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D TPAMA_0734 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D TPAMA_0104 ushA; bifunctional 5'-nucleotidase/UDP-sugar diphosphatase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D TPAMA_0419 surE; acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D TPAMA_0741 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D TPAMA_0780 nadE; NAD(+) synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D TPAMA_0441 ppnK; putative inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:tpo00770] D TPAMA_0431 putative Baf family transcriptional regulator K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D TPAMA_0283 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D TPAMA_0296 coaE; putative dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D TPAMA_0828 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] C 00780 Biotin metabolism [PATH:tpo00780] D TPAMA_0357 birA; biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism C 00790 Folate biosynthesis [PATH:tpo00790] D TPAMA_0340 folC; bifunctional dihydrofolate synthase/tetrahydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] C 00670 One carbon pool by folate [PATH:tpo00670] D TPAMA_0732 folD; bifunctional methylenetetrahydrofolate dehydrogenase (NADP(+))/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D TPAMA_0329 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D TPAMA_0756 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TPAMA_1007 thyX; thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D TPAMA_0694 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism D TPAMA_0673 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:tpo00900] D TPAMA_0824 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D TPAMA_0601 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D TPAMA_0512 ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D TPAMA_0371 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D TPAMA_0446 ispG; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D TPAMA_0547 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D TPAMA_0683 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TPAMA_0603 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation [PATH:tpo00903] D TPAMA_0935 hypothetical protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D TPAMA_0560 tktA; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:tpo00332] D TPAMA_0351 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D TPAMA_0350 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:tpo00521] D TPAMA_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPAMA_0642 phosphohexose mutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D TPAMA_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] C 00525 Acarbose and validamycin biosynthesis C 00401 Novobiocin biosynthesis D TPAMA_0223 pyridoxal phosphate-dependent aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis C 00333 Prodigiosin biosynthesis C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D TPAMA_0808 acpP; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D TPAMA_0794 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D TPAMA_0057 oadB; oxaloacetate decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] C 00627 Aminobenzoate degradation C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation D TPAMA_0935 hypothetical protein K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83] C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:tpo03020] D TPAMA_0241 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TPAMA_0242 rpoC; DNA-directed RNA polymerase subunit beta prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TPAMA_0212 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TPAMA_0701 rpoZ; putative DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D TPAMA_0380 putative DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:tpo03010] D TPAMA_0279 bifunctional cytidylate kinase/ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D TPAMA_0606 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D TPAMA_0195 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D TPAMA_0306 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TPAMA_0206 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D TPAMA_0063 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D TPAMA_0244 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TPAMA_0203 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D TPAMA_1024 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D TPAMA_0188 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D TPAMA_0211 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D TPAMA_0243 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D TPAMA_0210 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D TPAMA_0202 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D TPAMA_0887 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D TPAMA_0905 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D TPAMA_0198 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D TPAMA_0061 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D TPAMA_0193 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D TPAMA_0250b rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D TPAMA_0758 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D TPAMA_0238 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D TPAMA_0192 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D TPAMA_0189 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D TPAMA_0190 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D TPAMA_0201 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D TPAMA_0204 rplF; putative ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D TPAMA_0240 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D TPAMA_0060 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D TPAMA_0239 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D TPAMA_0237 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D TPAMA_1025 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D TPAMA_0199 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D TPAMA_0207 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D TPAMA_0196 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D TPAMA_0213 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D TPAMA_0205 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D TPAMA_0909 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D TPAMA_0848 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D TPAMA_0745 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D TPAMA_0194 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D TPAMA_0191 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D TPAMA_0200 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D TPAMA_0372 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D TPAMA_0743 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D TPAMA_0362 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D TPAMA_0197 rpmC; putative ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D TPAMA_0206a rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D TPAMA_0255 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D TPAMA_0807 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D TPAMA_0234 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D TPAMA_0951 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D TPAMA_0849 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D TPAMA_r0001 rrs1; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPAMA_r0004 rrs2; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPAMA_r0002 rrl1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPAMA_r0005 rrl2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPAMA_r0003 rrf1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPAMA_r0006 rrf2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:tpo00970] D TPAMA_t0012 tRNA-Ile K14218 tRNA-Ala; tRNA Ala D TPAMA_t0041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPAMA_t0045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPAMA_t0003 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0024 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TPAMA_t0028 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TPAMA_t0025 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TPAMA_t0006 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPAMA_t0018 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPAMA_t0007 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPAMA_t0008 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPAMA_t0017 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPAMA_t0023 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPAMA_t0032 tRNA-His K14226 tRNA-His; tRNA His D TPAMA_t0015 tRNA-Ala K14227 tRNA-Ile; tRNA Ile D TPAMA_t0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0010 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0022 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0021 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPAMA_t0039 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPAMA_t0029 tRNA-Met K14230 tRNA-Met; tRNA Met D TPAMA_t0011 tRNA-Met K14230 tRNA-Met; tRNA Met D TPAMA_t0037 tRNA-Met K14230 tRNA-Met; tRNA Met D TPAMA_t0033 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TPAMA_t0027 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPAMA_t0034 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPAMA_t0038 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPAMA_t0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPAMA_t0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPAMA_t0004 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPAMA_t0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPAMA_t0013 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPAMA_t0019 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPAMA_t0042 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPAMA_t0014 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TPAMA_t0020 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TPAMA_t0009 tRNA-Val K14237 tRNA-Val; tRNA Val D TPAMA_t0043 tRNA-Val K14237 tRNA-Val; tRNA Val D TPAMA_t0036 tRNA-Val K14237 tRNA-Val; tRNA Val D TPAMA_0673 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPAMA_1020 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TPAMA_1021 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TPAMA_1017 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TPAMA_0985 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPAMA_0609 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TPAMA_0672 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPAMA_0837 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TPAMA_0647 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TPAMA_0091 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TPAMA_0798 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TPAMA_0756 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D TPAMA_1035 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TPAMA_0586 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPAMA_0452 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TPAMA_0644 lysS1; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TPAMA_0831 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPAMA_0160 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TPAMA_0641 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TPAMA_0973 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TPAMA_0015 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TPAMA_0834 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPAMA_0632 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:tpo03060] D TPAMA_0208 secY; Sec family Type I general secretory pathway protein SecY K03076 secY; preprotein translocase subunit SecY D TPAMA_0235 secE; Sec family Type I general secretory pathway protein, subunit SecE K03073 secE; preprotein translocase subunit SecE D TPAMA_0536 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TPAMA_0410 secD; RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter K03072 secD; preprotein translocase subunit SecD D TPAMA_0411 secF; RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter K03074 secF; preprotein translocase subunit SecF D TPAMA_0409a yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D TPAMA_0949 oxaA; Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPAMA_0379 secA; Sec family Type I general secretory pathway protein SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPAMA_0416 ffh; Sec family Type I general secretory pathway protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TPAMA_nc0001 bacterial signal recognition particle RNA K01983 ffs; SRP RNA D TPAMA_0578 ftsY; Sec family Type I general secretory pathway protein K03110 ftsY; fused signal recognition particle receptor D TPAMA_0185 lepB1; putative signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPAMA_0926 lepB2; putative signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPAMA_0978 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:tpo04122] D TPAMA_0863 nifS; bifunctional cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPAMA_0559 thiI; thiamine biosynthesis ATP pyrophosphatase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] C 03050 Proteasome C 03018 RNA degradation [PATH:tpo03018] D TPAMA_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPAMA_0886 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TPAMA_0770 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D TPAMA_0103 recQ; ATP-dependent helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TPAMA_0254 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D TPAMA_1018 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D TPAMA_0108 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPAMA_0216 dnaK; chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TPAMA_0030 groEL; chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPAMA_0596 pcnB2; tRNA polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:tpo03030] D TPAMA_0643 dnaQ; DNA-directed DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPAMA_0669 dnaE; DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPAMA_0521 dnaZX1; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_1005 dnaZX2; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_0587 holA; DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPAMA_0002 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPAMA_0058 dnaB; replicative DNA helicase DnaB K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TPAMA_0492 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D TPAMA_0062 ssb1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0310 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0353 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TPAMA_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:tpo03410] D TPAMA_0775 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TPAMA_0343 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TPAMA_0229 udg; uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TPAMA_0125 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TPAMA_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPAMA_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:tpo03420] D TPAMA_0344 trcF; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TPAMA_0514 uvrA; excision endonuclease subunit UvrA K03701 uvrA; excinuclease ABC subunit A D TPAMA_0116 uvrB; excision endonuclease subunit UvrB K03702 uvrB; excinuclease ABC subunit B D TPAMA_0472 uvrC; excision endonuclease subunit UvrC K03703 uvrC; excinuclease ABC subunit C D TPAMA_0102 UvrD/REP family ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPAMA_1028 uvrD; excision endonuclease subunit UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPAMA_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPAMA_0380 putative DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] C 03430 Mismatch repair [PATH:tpo03430] D TPAMA_0328 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D TPAMA_0303 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D TPAMA_0102 UvrD/REP family ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPAMA_1028 uvrD; excision endonuclease subunit UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPAMA_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPAMA_0062 ssb1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0310 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0669 dnaE; DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPAMA_0002 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPAMA_0521 dnaZX1; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_1005 dnaZX2; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_0587 holA; DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPAMA_0643 dnaQ; DNA-directed DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPAMA_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPAMA_0810 dam; site-specific DNA-methyltransferase (adenine-specific) K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:tpo03440] D TPAMA_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPAMA_0062 ssb1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0310 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0003 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF D TPAMA_1004 recR; recombination protein R K06187 recR; recombination protein RecR D TPAMA_0692 recA; recombination protein A K03553 recA; recombination protein RecA D TPAMA_0543 ruvA; crossover junction endoribonuclease subunit A K03550 ruvA; holliday junction DNA helicase RuvA D TPAMA_0162 ruvB; crossover junction endoribonuclease subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TPAMA_0517 ruvC; crossover junction endoribonuclease subunit C K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TPAMA_0687 recG; DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TPAMA_0669 dnaE; DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPAMA_0002 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPAMA_0521 dnaZX1; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_1005 dnaZX2; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_0587 holA; DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPAMA_0643 dnaQ; DNA-directed DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPAMA_0230 priA; DNA replication factor Y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:tpo02010] D TPAMA_0144 tbpA; thiamine ABC superfamily ATP binding cassette transporter, binding protein K02064 thiB; thiamine transport system substrate-binding protein D TPAMA_0143 ABC superfamily ATP binding cassette transporter, membrane protein K02063 thiP; thiamine transport system permease protein D TPAMA_0142 putative sugar ABC superfamily ATP binding cassette transporter, ABC protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D TPAMA_0655 potD; spermidine/putrescine ABC superfamily ATP binding cassette transporter, binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D TPAMA_0654 potC; spermidine/putrescine ABC superfamily ATP binding cassette transporter, membrane protein K11070 potC; spermidine/putrescine transport system permease protein D TPAMA_0653 potB; spermidine/putrescine ABC superfamily ATP binding cassette transporter, membrane protein K11071 potB; spermidine/putrescine transport system permease protein D TPAMA_0652 potA; spermidine/putrescine ABC superfamily ATP binding cassette transporter, ABC protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TPAMA_0804 sugar ABC superfamily ATP binding cassette transporter, ABC protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TPAMA_0319 tmpC; sugar ABC superfamily ATP binding cassette transporter, membrane protein K07335 bmpA; basic membrane protein A and related proteins D TPAMA_0322 sugar ABC superfamily ATP binding cassette transporter, membrane protein K23535 nupB; general nucleoside transport system permease protein D TPAMA_0323 sugar ABC superfamily ATP binding cassette transporter, membrane protein K23536 nupC; general nucleoside transport system permease protein D TPAMA_0321 sugar ABC superfamily ATP binding cassette transporter, ABC protein K23537 nupA; general nucleoside transport system ATP-binding protein D TPAMA_0684 mglB; galactose ABC superfamily ATP binding cassette transporter, binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPAMA_0545 sugar ABC superfamily ATP binding cassette transporter, binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPAMA_0686 mglC; galactose ABC superfamily ATP binding cassette transporter, membrane protein K10541 mglC; methyl-galactoside transport system permease protein D TPAMA_0685 mglA; galactose ABC superfamily ATP binding cassette transporter, ABC protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D TPAMA_0821 tpn32; putative metal ion ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein D TPAMA_0119 metI; methionine ABC superfamily ATP binding cassette transporter, membrane protein K02072 metI; D-methionine transport system permease protein D TPAMA_0120 metN; methionine ABC superfamily ATP binding cassette transporter, ABC protein K02071 metN; D-methionine transport system ATP-binding protein D TPAMA_0034 znuA; zinc (Zn2+) ABC superfamily ATP binding cassette transporter, binding protein K09815 znuA; zinc transport system substrate-binding protein D TPAMA_0036 znuB; zinc (Zn2+) ABC superfamily ATP binding cassette transporter, membrane protein K09816 znuB; zinc transport system permease protein D TPAMA_0035 znuC; zinc (Zn2+) ABC superfamily ATP binding cassette transporter, ABC protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TPAMA_0163 troA; iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC superfamily ATP binding cassette transporter, binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein D TPAMA_0165 troC; iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC superfamily ATP binding cassette transporter, membrane protein K11708 troC; manganese/zinc/iron transport system permease protein D TPAMA_0166 troD; iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC superfamily ATP binding cassette transporter, membrane protein K11709 troD; manganese/zinc/iron transport system permease protein D TPAMA_0164 troB; iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC superfamily ATP binding cassette transporter, ABC protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D TPAMA_0228 bioY; BioY protein K03523 bioY; biotin transport system substrate-specific component D TPAMA_0226 putative membrane protein K16783 bioN; biotin transport system permease protein D TPAMA_0227 cbiO; putative cobalt (Co2+) ABC superfamily ATP binding cassette transporter, ABC protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D TPAMA_0298 ABC superfamily ATP binding cassette transporter, membrane protein K23510 rfuA; riboflavin transport system substrate-binding protein D TPAMA_0301 sugar ABC superfamily ATP binding cassette transporter, membrane protein K23511 rfuC; riboflavin transport system permease protein D TPAMA_0302 sugar ABC superfamily ATP binding cassette transporter, membrane protein K23512 rfuD; riboflavin transport system permease protein D TPAMA_0299 sugar ABC superfamily ATP binding cassette transporter, ABC protein K23513 rfuB; riboflavin transport system ATP-binding protein D TPAMA_0580 lolE1; putative lipoprotein ABC superfamily ATP binding cassette transporter, membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TPAMA_0582 lolE2; lipoprotein ABC superfamily ATP binding cassette transporter, membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TPAMA_0581 lipoprotein/macrolide ABC superfamily ATP binding cassette transporter, ABC protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TPAMA_0884 putative membrane protein K07091 lptF; lipopolysaccharide export system permease protein D TPAMA_0883 conserved hypothetical membrane protein K11720 lptG; lipopolysaccharide export system permease protein D TPAMA_0786 ABC superfamily ATP binding cassette transporter, ABC protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] C 02060 Phosphotransferase system (PTS) [PATH:tpo02060] D TPAMA_0589 hpr; HPr family phosphotransferase system protein K02784 ptsH; phosphocarrier protein HPr D TPAMA_0755 ptsN; PTS family fructose/mannitol (fru) porter component IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TPAMA_0085 PTS family fructose (fru) porter component IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:tpo03070] D TPAMA_0410 secD; RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter K03072 secD; preprotein translocase subunit SecD D TPAMA_0411 secF; RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter K03074 secF; preprotein translocase subunit SecF D TPAMA_0235 secE; Sec family Type I general secretory pathway protein, subunit SecE K03073 secE; preprotein translocase subunit SecE D TPAMA_0536 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TPAMA_0208 secY; Sec family Type I general secretory pathway protein SecY K03076 secY; preprotein translocase subunit SecY D TPAMA_0409a yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D TPAMA_0949 oxaA; Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPAMA_0379 secA; Sec family Type I general secretory pathway protein SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPAMA_0578 ftsY; Sec family Type I general secretory pathway protein K03110 ftsY; fused signal recognition particle receptor D TPAMA_0416 ffh; Sec family Type I general secretory pathway protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] B B 09132 Signal transduction C 02020 Two-component system [PATH:tpo02020] D TPAMA_0868 flaB2; flagellar filament core protein FlaB K02406 fliC; flagellin D TPAMA_0870 flaB3; flagellar filament core protein FlaB K02406 fliC; flagellin D TPAMA_0792 flaB1; flagellar filament core protein FlaB K02406 fliC; flagellin D TPAMA_0709 whiG; DNA-directed RNA polymerase sigma subunit WhiG K02405 fliA; RNA polymerase sigma factor FliA D TPAMA_0725 motA; Mot family proton (H+) or sodium (Na+) transporter MotA K02556 motA; chemotaxis protein MotA D TPAMA_0001 dnaA; DNA-directed DNA replication initiator protein K02313 dnaA; chromosomal replication initiator protein D TPAMA_0221 vanY; serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TPAMA_0657 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D TPAMA_0111 rpoN; DNA-directed RNA polymerase sigma subunit RpoN K03092 rpoN; RNA polymerase sigma-54 factor D TPAMA_0630 cheR; protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TPAMA_0040 mcp1; putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0488 mcp2; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0639 mcp3; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0640 mcp4; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0439 cheW2; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D TPAMA_0363 cheA; sensor histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPAMA_0366 cheY; response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPAMA_0631 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TPAMA_0364 cheW1; chemotaxis protein CheW K02659 pilI; twitching motility protein PilI C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:tpo02024] D TPAMA_0145 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TPAMA_0585 oppA; oligopeptide ABC superfamily ATP binding cassette transporter, membrane/binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TPAMA_0949 oxaA; Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPAMA_0235 secE; Sec family Type I general secretory pathway protein, subunit SecE K03073 secE; preprotein translocase subunit SecE D TPAMA_0536 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TPAMA_0208 secY; Sec family Type I general secretory pathway protein SecY K03076 secY; preprotein translocase subunit SecY D TPAMA_0409a yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D TPAMA_0379 secA; Sec family Type I general secretory pathway protein SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPAMA_0578 ftsY; Sec family Type I general secretory pathway protein K03110 ftsY; fused signal recognition particle receptor D TPAMA_0416 ffh; Sec family Type I general secretory pathway protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:tpo02030] D TPAMA_0040 mcp1; putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0488 mcp2; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0639 mcp3; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0640 mcp4; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0684 mglB; galactose ABC superfamily ATP binding cassette transporter, binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPAMA_0545 sugar ABC superfamily ATP binding cassette transporter, binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPAMA_0363 cheA; sensor histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPAMA_0439 cheW2; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D TPAMA_0366 cheY; response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPAMA_0365 cheX; putative chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D TPAMA_0631 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TPAMA_0630 cheR; protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TPAMA_0026 fliG1; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D TPAMA_0400 fliG2; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D TPAMA_0721 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D TPAMA_0720 fliY; bifunctional chemotaxis protein CheC/flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN D TPAMA_0725 motA; Mot family proton (H+) or sodium (Na+) transporter MotA K02556 motA; chemotaxis protein MotA D TPAMA_0724 motB; Mot family proton (H+) or sodium (Na+) transporter MotB K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:tpo02040] D TPAMA_0398 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D TPAMA_0399 fliF; IIISP family Type III (virulence-related) secretory pathway protein K02409 fliF; flagellar M-ring protein FliF D TPAMA_0026 fliG1; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D TPAMA_0400 fliG2; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D TPAMA_0401 fliH; IIISP family Type III (virulence-related) secretory pathway protein K02411 fliH; flagellar assembly protein FliH D TPAMA_0402 fliI; IIISP family Type III (virulence-related) secretory pathway protein K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TPAMA_0403 fliJ; flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D TPAMA_0722 fliL2; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D TPAMA_0377 fliL1; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D TPAMA_0721 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D TPAMA_0720 fliY; bifunctional chemotaxis protein CheC/flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN D TPAMA_0719 fliO; putative flagellar biogenesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D TPAMA_0718 fliP; IIISP family Type III (virulence-related) secretory pathway protein K02419 fliP; flagellar biosynthesis protein FliP D TPAMA_0717 fliQ; IIISP family Type III (virulence-related) secretory pathway protein K02420 fliQ; flagellar biosynthesis protein FliQ D TPAMA_0716 fliR; IIISP family Type III (virulence-related) secretory pathway protein K02421 fliR; flagellar biosynthesis protein FliR D TPAMA_0714 flhA; IIISP family Type III (virulence-related) secretory pathway protein K02400 flhA; flagellar biosynthesis protein FlhA D TPAMA_0715 flhB; IIISP family Type III (virulence-related) secretory pathway protein K02401 flhB; flagellar biosynthesis protein FlhB D TPAMA_0396 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D TPAMA_0397 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D TPAMA_0728 flgD; flagellar basal body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D TPAMA_0727 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D TPAMA_0961 flgG2; flagellar basal body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF D TPAMA_0960 flgG1; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D TPAMA_0959 flgJ; putative flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D TPAMA_0660 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D TPAMA_0659 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D TPAMA_0868 flaB2; flagellar filament core protein FlaB K02406 fliC; flagellin D TPAMA_0870 flaB3; flagellar filament core protein FlaB K02406 fliC; flagellin D TPAMA_0792 flaB1; flagellar filament core protein FlaB K02406 fliC; flagellin D TPAMA_0872 fliD; flagellar hook-associated protein FliD K02407 fliD; flagellar hook-associated protein 2 D TPAMA_0943 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D TPAMA_0725 motA; Mot family proton (H+) or sodium (Na+) transporter MotA K02556 motA; chemotaxis protein MotA D TPAMA_0724 motB; Mot family proton (H+) or sodium (Na+) transporter MotB K02557 motB; chemotaxis protein MotB D TPAMA_0493 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086 rpoD; RNA polymerase primary sigma factor D TPAMA_0111 rpoN; DNA-directed RNA polymerase sigma subunit RpoN K03092 rpoN; RNA polymerase sigma-54 factor D TPAMA_0709 whiG; DNA-directed RNA polymerase sigma subunit WhiG K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D TPAMA_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:tpo01501] D TPAMA_0965 macA; membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TPAMA_0705 mrcA; bifunctional membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPAMA_0500 pbp1; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TPAMA_0760 pbp2; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:tpo01502] D TPAMA_0670 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPAMA_0681 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TPAMA_0386 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D TPAMA_0345 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TPAMA_0523 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TPAMA_0221 vanY; serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:tpo01503] D TPAMA_0247 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TPAMA_0965 macA; membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:tpo01000] C 01001 Protein kinases [BR:tpo01001] D TPAMA_0363 cheA; sensor histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:tpo01009] D TPAMA_0108 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPAMA_0984 htpG; chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 01002 Peptidases and inhibitors [BR:tpo01002] D TPAMA_0978 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D TPAMA_0112 pepC; bleomycin hydrolase K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40] D TPAMA_0861 glmS; glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D TPAMA_0445 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D TPAMA_0335 putative membrane protein K07052 K07052; CAAX protease family protein D TPAMA_0221 vanY; serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TPAMA_0025 M16C subfamily peptidase K06972 PITRM1; presequence protease [EC:3.4.24.-] D TPAMA_0842 map; methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D TPAMA_0569 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D TPAMA_0765 ftsH; M41 family endopeptidase FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TPAMA_0600 putative membrane-associated zinc protease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D TPAMA_0800 dacC; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TPAMA_0507 clpP1; S14 family endopeptidase ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TPAMA_1041 clpP2; S14 family endopeptidase ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D TPAMA_0524 lon2; S16 family endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D TPAMA_0185 lepB1; putative signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPAMA_0926 lepB2; putative signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D TPAMA_0277 prc; C-terminal processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D TPAMA_0997 sppA; signal peptide peptidase A K04773 sppA; protease IV [EC:3.4.21.-] D TPAMA_0982 rhomboid family protein K07059 K07059; rhomboid family protein D TPAMA_0688 ldcA; muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D TPAMA_0114 hflC; putative HflC protein K04087 hflC; modulator of FtsH protease HflC D TPAMA_0113 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:tpo01003] D TPAMA_0705 mrcA; bifunctional membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPAMA_0275 wecG; WecB/TagA/CpsF family glycosyl transferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 01005 Lipopolysaccharide biosynthesis proteins C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:tpo01011] D TPAMA_0029 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D TPAMA_0090 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D TPAMA_0341 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D TPAMA_0903 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D TPAMA_0933 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D TPAMA_0670 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D TPAMA_0681 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D TPAMA_0406 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D TPAMA_0688 ldcA; muramoyltetrapeptide carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D TPAMA_0345 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D TPAMA_0523 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D TPAMA_0516 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D TPAMA_0705 mrcA; bifunctional membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D TPAMA_0500 pbp1; penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D TPAMA_0760 pbp2; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TPAMA_0800 dacC; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D TPAMA_0221 vanY; serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TPAMA_0043 putative lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TPAMA_0623 membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D TPAMA_0491 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D TPAMA_0993 rlpA; putative rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D TPAMA_0247 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:tpo01004] D TPAMA_0145 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TPAMA_0361 acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:tpo01006] D TPAMA_0683 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D TPAMA_0603 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D TPAMA_0637 miaA; tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:tpo01007] D TPAMA_0644 lysS1; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TPAMA_0673 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPAMA_0834 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPAMA_0632 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TPAMA_0091 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TPAMA_0831 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPAMA_0798 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TPAMA_0452 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TPAMA_1035 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TPAMA_0586 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPAMA_0985 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPAMA_0609 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TPAMA_0641 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TPAMA_0672 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPAMA_0647 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TPAMA_0160 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TPAMA_0837 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TPAMA_1017 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TPAMA_0973 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TPAMA_0015 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TPAMA_0223 pyridoxal phosphate-dependent aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:tpo03000] D TPAMA_0167 troR; iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+)-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D TPAMA_0357 birA; biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D TPAMA_0271 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TPAMA_0511 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D TPAMA_0096 dksA; putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D TPAMA_0383 mraZ; hypothetical protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:tpo03021] D TPAMA_0380 putative DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D TPAMA_0212 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TPAMA_0241 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TPAMA_0242 rpoC; DNA-directed RNA polymerase subunit beta prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TPAMA_0701 rpoZ; putative DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TPAMA_0493 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086 rpoD; RNA polymerase primary sigma factor D TPAMA_1012 sigA; DNA-directed RNA polymerase sigma subunit RpoD family K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D TPAMA_0092 rpoE; DNA-directed RNA polymerase sigma subunit RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D TPAMA_0111 rpoN; DNA-directed RNA polymerase sigma subunit RpoN K03092 rpoN; RNA polymerase sigma-54 factor D TPAMA_0709 whiG; DNA-directed RNA polymerase sigma subunit WhiG K02405 fliA; RNA polymerase sigma factor FliA D TPAMA_0892 nusA; transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA D TPAMA_1015 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D TPAMA_0236 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D TPAMA_0540 anti sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist D TPAMA_0233 anti sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist D TPAMA_0096 dksA; putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D TPAMA_0254 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:tpo03019] D TPAMA_0809 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TPAMA_1018 hypothetical protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D TPAMA_0770 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D TPAMA_0103 recQ; ATP-dependent helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TPAMA_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPAMA_0886 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D TPAMA_0254 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D TPAMA_0108 pfk; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D TPAMA_0216 dnaK; chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TPAMA_0030 groEL; chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPAMA_0596 pcnB2; tRNA polynucleotide adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D TPAMA_0657 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D TPAMA_0526 hrpA; ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:tpo03011] D TPAMA_0279 bifunctional cytidylate kinase/ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D TPAMA_0606 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D TPAMA_0195 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D TPAMA_0306 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D TPAMA_0206 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D TPAMA_0063 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D TPAMA_0244 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D TPAMA_0203 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D TPAMA_1024 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D TPAMA_0188 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D TPAMA_0211 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D TPAMA_0243 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D TPAMA_0210 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D TPAMA_0202 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D TPAMA_0887 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D TPAMA_0905 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D TPAMA_0198 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D TPAMA_0061 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D TPAMA_0193 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D TPAMA_0250b rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D TPAMA_0758 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D TPAMA_0238 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D TPAMA_0192 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D TPAMA_0189 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D TPAMA_0190 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D TPAMA_0201 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D TPAMA_0204 rplF; putative ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D TPAMA_0060 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D TPAMA_0239 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D TPAMA_0237 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D TPAMA_0240 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D TPAMA_1025 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D TPAMA_0199 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D TPAMA_0207 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D TPAMA_0196 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D TPAMA_0213 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D TPAMA_0205 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D TPAMA_0909 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D TPAMA_0848 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D TPAMA_0745 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D TPAMA_0194 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D TPAMA_0191 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D TPAMA_0200 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D TPAMA_0743 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D TPAMA_0362 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D TPAMA_0197 rpmC; putative ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D TPAMA_0206a rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D TPAMA_0255 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D TPAMA_0807 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D TPAMA_0234 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D TPAMA_0951 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D TPAMA_0849 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D TPAMA_0372 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D TPAMA_r0003 rrf1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPAMA_r0006 rrf2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPAMA_r0001 rrs1; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPAMA_r0004 rrs2; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPAMA_r0002 rrl1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPAMA_r0005 rrl2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:tpo03009] D TPAMA_0809 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TPAMA_0541 era; GTP-binding protein Era K03595 era; GTPase D TPAMA_0742 obgE; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] D TPAMA_0096 dksA; putative DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D TPAMA_0892 nusA; transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA D TPAMA_1015 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB D TPAMA_0236 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D TPAMA_0337 ksgA; rRNA dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D TPAMA_0065 putative SAM dependent methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D TPAMA_0032 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TPAMA_0276 putative RNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D TPAMA_0946 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TPAMA_0384 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D TPAMA_0975 putative tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D TPAMA_0109 spoU2; putative rRNA (adenosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D TPAMA_0682 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D TPAMA_0068 putative Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D TPAMA_0459 rluB; RsuA family pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D TPAMA_0231 pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D TPAMA_0339 rluA2; pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D TPAMA_0907 rimM; putative 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D TPAMA_0770 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D TPAMA_0689 engA; GTP-binding protein K03977 engA; GTPase D TPAMA_0182 sua5; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TPAMA_0890 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D TPAMA_0893 hypothetical protein K09748 rimP; ribosome maturation factor RimP D TPAMA_0738 hypothetical protein K09710 ybeB; ribosome-associated protein D TPAMA_0650 hypothetical protein K07042 ybeY; probable rRNA maturation factor D TPAMA_0124 ychF; Obg family GTP-binding protein K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:tpo03016] D TPAMA_0819 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D TPAMA_0270 pcnB1; polynucleotide adenylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D TPAMA_0673 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPAMA_0160 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D TPAMA_0452 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D TPAMA_0586 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPAMA_0798 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D TPAMA_0831 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPAMA_0985 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPAMA_1017 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D TPAMA_0609 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D TPAMA_0672 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPAMA_0837 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D TPAMA_0647 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D TPAMA_0091 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D TPAMA_1035 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D TPAMA_0641 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D TPAMA_0973 pheS; phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D TPAMA_0015 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D TPAMA_0834 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPAMA_0632 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D TPAMA_0464 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D TPAMA_0830 truA; tRNA-pseudouridine synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D TPAMA_0889 truB; tRNA-pseudouridine synthase I K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D TPAMA_0863 nifS; bifunctional cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPAMA_0182 sua5; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D TPAMA_0637 miaA; tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D TPAMA_0550 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D TPAMA_0044 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TPAMA_0950a rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D TPAMA_nc0003 bacterial Rnase P class A K01978 rnpB; M1 RNA D TPAMA_0805 rnb; putative exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D TPAMA_0644 lysS1; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D TPAMA_0980 dus; tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D TPAMA_0754 miaB2; 2-methylthioadenine synthetase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D TPAMA_0269 miaB1; putative MiaB tRNA modification protein K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D TPAMA_0908 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D TPAMA_0559 thiI; thiamine biosynthesis ATP pyrophosphatase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D TPAMA_0373 PP-loop family ATPase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D TPAMA_0876 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D TPAMA_0875 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D TPAMA_0886 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:tpo03012] D TPAMA_0891 infB; initiation factor IF2 K02519 infB; translation initiation factor IF-2 D TPAMA_0850 infC; initiation factor IF3 K02520 infC; translation initiation factor IF-3 D TPAMA_0605 tsf; elongation factor EF1B K02357 tsf; elongation factor Ts D TPAMA_0187 tufA; elongation factor EF1A K02358 tuf; elongation factor Tu D TPAMA_0767 fusA2; elongation factor EF2 K02355 fusA; elongation factor G D TPAMA_0450a fusA1; elongation factor EF2 K02355 fusA; elongation factor G D TPAMA_0051 prfA; peptide chain release factor RF1 K02835 prfA; peptide chain release factor 1 D TPAMA_0604 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D TPAMA_0052 hemK; HemK family methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D TPAMA_1011 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D TPAMA_0097 infA; initiation factor IF1 K02518 infA; translation initiation factor IF-1 D TPAMA_0525 efp; elongation factor P K02356 efp; elongation factor P D TPAMA_1040 lysS2; lysine--tRNA ligase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D TPAMA_0576 prfB; peptide chain release factor RF2 K02836 prfB; peptide chain release factor 2 C 03110 Chaperones and folding catalysts [BR:tpo03110] D TPAMA_0801 clpA2; S14 family endopeptidase ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D TPAMA_0071 clpB; S14 family endopeptidase ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D TPAMA_0549 clpA1; S14 family endopeptidase ClpA K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D TPAMA_0508 clpX; S14 family endopeptidase ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D TPAMA_0984 htpG; chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D TPAMA_0216 dnaK; chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TPAMA_0030 groEL; chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPAMA_0217 dnaJ2; chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D TPAMA_0098 dnaJ1; chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D TPAMA_0215 grpE; chaperone GrpE K03687 GRPE; molecular chaperone GrpE D TPAMA_1013 groES; chaperone GroES K04078 groES; chaperonin GroES D TPAMA_0765 ftsH; M41 family endopeptidase FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D TPAMA_0862 fklB; peptidylprolyl isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D TPAMA_0349 fkpB; peptidylprolyl isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D TPAMA_0919 thioredoxin group 1 family protein K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:tpo04131] D TPAMA_1010 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D TPAMA_0505 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D TPAMA_0844 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPAMA_0168 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D TPAMA_0984 htpG; chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system C 03051 Proteasome [BR:tpo03051] D TPAMA_0984 htpG; chaperone HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:tpo03032] D TPAMA_0353 rnhA; ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D TPAMA_0251 bacterial DNA-binding factor K04764 ihfA; integration host factor subunit alpha D TPAMA_0001 dnaA; DNA-directed DNA replication initiator protein K02313 dnaA; chromosomal replication initiator protein D TPAMA_0058 dnaB; replicative DNA helicase DnaB K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D TPAMA_0492 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D TPAMA_0062 ssb1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0310 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0669 dnaE; DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPAMA_0002 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPAMA_0587 holA; DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPAMA_0643 dnaQ; DNA-directed DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPAMA_0521 dnaZX1; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_1005 dnaZX2; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPAMA_0810 dam; site-specific DNA-methyltransferase (adenine-specific) K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TPAMA_0005 gyrA; cDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TPAMA_1006 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TPAMA_0394 topA; DNA topoisomerase TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:tpo03036] D TPAMA_0809 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D TPAMA_0251 bacterial DNA-binding factor K04764 ihfA; integration host factor subunit alpha D TPAMA_0001 dnaA; DNA-directed DNA replication initiator protein K02313 dnaA; chromosomal replication initiator protein D TPAMA_1038 tpF1; bacterioferrin K04047 dps; starvation-inducible DNA-binding protein D TPAMA_0367 smc; chromosome segregation ATPase K03529 smc; chromosome segregation protein D TPAMA_0691 scpA; segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A D TPAMA_0458 putative transcriptional regulator K06024 scpB; segregation and condensation protein B D TPAMA_0389 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D TPAMA_0760 pbp2; penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D TPAMA_0999 ftsK; S-DNA-T family septal DNA translocator K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D TPAMA_0385 hypothetical protein K03586 ftsL; cell division protein FtsL D TPAMA_0388 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D TPAMA_0387 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D TPAMA_0390 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TPAMA_0247 amiC; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D TPAMA_0965 macA; membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TPAMA_0497 mreB; cell shape determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D TPAMA_0498 mreC; cell shape determining protein MreC K03570 mreC; rod shape-determining protein MreC D TPAMA_0499 mreD; cell shape determining protein MreD K03571 mreD; rod shape-determining protein MreD D TPAMA_0501 rodA; cell shape determining protein RodA K05837 rodA; rod shape determining protein RodA D TPAMA_0272 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein D TPAMA_0271 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D TPAMA_0044 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D TPAMA_0946 gidB; glucose-inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D TPAMA_0391 xerD1; integrase/recombinase XerD K04763 xerD; integrase/recombinase XerD C 03400 DNA repair and recombination proteins [BR:tpo03400] D TPAMA_0141 ada; methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D TPAMA_0343 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D TPAMA_0775 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D TPAMA_0380 putative DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D TPAMA_0885 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D TPAMA_0229 udg; uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D TPAMA_0125 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D TPAMA_0704 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D TPAMA_0634 lig; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TPAMA_0514 uvrA; excision endonuclease subunit UvrA K03701 uvrA; excinuclease ABC subunit A D TPAMA_0116 uvrB; excision endonuclease subunit UvrB K03702 uvrB; excinuclease ABC subunit B D TPAMA_0472 uvrC; excision endonuclease subunit UvrC K03703 uvrC; excinuclease ABC subunit C D TPAMA_0102 UvrD/REP family ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPAMA_1028 uvrD; excision endonuclease subunit UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TPAMA_0241 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D TPAMA_0242 rpoC; DNA-directed RNA polymerase subunit beta prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D TPAMA_0212 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D TPAMA_0701 rpoZ; putative DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D TPAMA_0344 trcF; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D TPAMA_0328 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D TPAMA_0303 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D TPAMA_0669 dnaE; DNA-directed DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D TPAMA_0002 dnaN; DNA-directed DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D TPAMA_0587 holA; DNA-directed DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D TPAMA_0643 dnaQ; DNA-directed DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D TPAMA_0521 dnaZX1; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_1005 dnaZX2; DNA-directed DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D TPAMA_0062 ssb1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0310 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0810 dam; site-specific DNA-methyltransferase (adenine-specific) K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TPAMA_0692 recA; recombination protein A K03553 recA; recombination protein RecA D TPAMA_0543 ruvA; crossover junction endoribonuclease subunit A K03550 ruvA; holliday junction DNA helicase RuvA D TPAMA_0162 ruvB; crossover junction endoribonuclease subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D TPAMA_0517 ruvC; crossover junction endoribonuclease subunit C K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D TPAMA_0230 priA; DNA replication factor Y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D TPAMA_0627 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 D TPAMA_0626 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D TPAMA_1022 sms; DNA repair protein Sms K04485 radA; DNA repair protein RadA/Sms D TPAMA_0003 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF D TPAMA_0687 recG; DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D TPAMA_1004 recR; recombination protein R K06187 recR; recombination protein RecR D TPAMA_0442 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D TPAMA_0005 gyrA; cDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D TPAMA_1006 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D TPAMA_0394 topA; DNA topoisomerase TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D TPAMA_0251 bacterial DNA-binding factor K04764 ihfA; integration host factor subunit alpha D TPAMA_0103 recQ; ATP-dependent helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D TPAMA_1023 recX; recombination regulator RecX K03565 recX; regulatory protein D TPAMA_1008 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D TPAMA_0053 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D TPAMA_0436 DHH superfamily phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:tpo03029] D TPAMA_0891 infB; initiation factor IF2 K02519 infB; translation initiation factor IF-2 D TPAMA_0850 infC; initiation factor IF3 K02520 infC; translation initiation factor IF-3 D TPAMA_0605 tsf; elongation factor EF1B K02357 tsf; elongation factor Ts D TPAMA_0187 tufA; elongation factor EF1A K02358 tuf; elongation factor Tu D TPAMA_0767 fusA2; elongation factor EF2 K02355 fusA; elongation factor G D TPAMA_0450a fusA1; elongation factor EF2 K02355 fusA; elongation factor G D TPAMA_0541 era; GTP-binding protein Era K03595 era; GTPase D TPAMA_0834 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D TPAMA_0586 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D TPAMA_0985 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D TPAMA_0672 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D TPAMA_0831 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D TPAMA_1020 gatA; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D TPAMA_1021 gatB; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D TPAMA_0062 ssb1; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0310 ssb2; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D TPAMA_0326 tp92; outer membrane protein K07277 SAM50; outer membrane protein insertion porin family D TPAMA_0216 dnaK; chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TPAMA_0215 grpE; chaperone GrpE K03687 GRPE; molecular chaperone GrpE D TPAMA_0030 groEL; chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPAMA_1013 groES; chaperone GroES K04078 groES; chaperonin GroES D TPAMA_0217 dnaJ2; chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D TPAMA_0098 dnaJ1; chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D TPAMA_0863 nifS; bifunctional cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D TPAMA_0949 oxaA; Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D TPAMA_0984 htpG; chaperone HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:tpo02000] D TPAMA_0144 tbpA; thiamine ABC superfamily ATP binding cassette transporter, binding protein K02064 thiB; thiamine transport system substrate-binding protein D TPAMA_0143 ABC superfamily ATP binding cassette transporter, membrane protein K02063 thiP; thiamine transport system permease protein D TPAMA_0142 putative sugar ABC superfamily ATP binding cassette transporter, ABC protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D TPAMA_0655 potD; spermidine/putrescine ABC superfamily ATP binding cassette transporter, binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D TPAMA_0654 potC; spermidine/putrescine ABC superfamily ATP binding cassette transporter, membrane protein K11070 potC; spermidine/putrescine transport system permease protein D TPAMA_0653 potB; spermidine/putrescine ABC superfamily ATP binding cassette transporter, membrane protein K11071 potB; spermidine/putrescine transport system permease protein D TPAMA_0652 potA; spermidine/putrescine ABC superfamily ATP binding cassette transporter, ABC protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D TPAMA_0804 sugar ABC superfamily ATP binding cassette transporter, ABC protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D TPAMA_0684 mglB; galactose ABC superfamily ATP binding cassette transporter, binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPAMA_0545 sugar ABC superfamily ATP binding cassette transporter, binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D TPAMA_0686 mglC; galactose ABC superfamily ATP binding cassette transporter, membrane protein K10541 mglC; methyl-galactoside transport system permease protein D TPAMA_0685 mglA; galactose ABC superfamily ATP binding cassette transporter, ABC protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D TPAMA_0319 tmpC; sugar ABC superfamily ATP binding cassette transporter, membrane protein K07335 bmpA; basic membrane protein A and related proteins D TPAMA_0322 sugar ABC superfamily ATP binding cassette transporter, membrane protein K23535 nupB; general nucleoside transport system permease protein D TPAMA_0323 sugar ABC superfamily ATP binding cassette transporter, membrane protein K23536 nupC; general nucleoside transport system permease protein D TPAMA_0321 sugar ABC superfamily ATP binding cassette transporter, ABC protein K23537 nupA; general nucleoside transport system ATP-binding protein D TPAMA_0298 ABC superfamily ATP binding cassette transporter, membrane protein K23510 rfuA; riboflavin transport system substrate-binding protein D TPAMA_0301 sugar ABC superfamily ATP binding cassette transporter, membrane protein K23511 rfuC; riboflavin transport system permease protein D TPAMA_0302 sugar ABC superfamily ATP binding cassette transporter, membrane protein K23512 rfuD; riboflavin transport system permease protein D TPAMA_0299 sugar ABC superfamily ATP binding cassette transporter, ABC protein K23513 rfuB; riboflavin transport system ATP-binding protein D TPAMA_0074 ugpB; sugar ABC superfamily ATP binding cassette transporter, binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D TPAMA_0737 msmE; sugar ABC superfamily ATP binding cassette transporter, binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D TPAMA_0075 ugpA; sugar ABC superfamily ATP binding cassette transporter, membrane protein K02025 ABC.MS.P; multiple sugar transport system permease protein D TPAMA_0076 ugpE; sugar ABC superfamily ATP binding cassette transporter, membrane protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D TPAMA_0821 tpn32; putative metal ion ABC superfamily ATP binding cassette transporter, binding protein K02073 metQ; D-methionine transport system substrate-binding protein D TPAMA_0119 metI; methionine ABC superfamily ATP binding cassette transporter, membrane protein K02072 metI; D-methionine transport system permease protein D TPAMA_0120 metN; methionine ABC superfamily ATP binding cassette transporter, ABC protein K02071 metN; D-methionine transport system ATP-binding protein D TPAMA_0308 putative polar amino acid ABC superfamily ATP binding cassette transporter, binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TPAMA_0309 putative polar amino acid ABC superfamily ATP binding cassette transporter, binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D TPAMA_0585 oppA; oligopeptide ABC superfamily ATP binding cassette transporter, membrane/binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D TPAMA_0034 znuA; zinc (Zn2+) ABC superfamily ATP binding cassette transporter, binding protein K09815 znuA; zinc transport system substrate-binding protein D TPAMA_0036 znuB; zinc (Zn2+) ABC superfamily ATP binding cassette transporter, membrane protein K09816 znuB; zinc transport system permease protein D TPAMA_0035 znuC; zinc (Zn2+) ABC superfamily ATP binding cassette transporter, ABC protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D TPAMA_0163 troA; iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC superfamily ATP binding cassette transporter, binding protein K11707 troA; manganese/zinc/iron transport system substrate-binding protein D TPAMA_0165 troC; iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC superfamily ATP binding cassette transporter, membrane protein K11708 troC; manganese/zinc/iron transport system permease protein D TPAMA_0166 troD; iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC superfamily ATP binding cassette transporter, membrane protein K11709 troD; manganese/zinc/iron transport system permease protein D TPAMA_0164 troB; iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+) ABC superfamily ATP binding cassette transporter, ABC protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D TPAMA_0228 bioY; BioY protein K03523 bioY; biotin transport system substrate-specific component D TPAMA_0226 putative membrane protein K16783 bioN; biotin transport system permease protein D TPAMA_0227 cbiO; putative cobalt (Co2+) ABC superfamily ATP binding cassette transporter, ABC protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D TPAMA_0884 putative membrane protein K07091 lptF; lipopolysaccharide export system permease protein D TPAMA_0883 conserved hypothetical membrane protein K11720 lptG; lipopolysaccharide export system permease protein D TPAMA_0786 ABC superfamily ATP binding cassette transporter, ABC protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D TPAMA_0880 ABC superfamily ATP binding cassette transporter, membrane protein K25151 gldF; gliding motility-associated transport system permease protein D TPAMA_0881 natA; ABC superfamily ATP binding cassette transporter, ABC protein K25152 gldA; gliding motility-associated transport system ATP-binding protein D TPAMA_0879 conserved hypothetical membrane protein K25153 gldG; gliding motility-associatede transport system auxiliary component D TPAMA_0580 lolE1; putative lipoprotein ABC superfamily ATP binding cassette transporter, membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TPAMA_0582 lolE2; lipoprotein ABC superfamily ATP binding cassette transporter, membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D TPAMA_0581 lipoprotein/macrolide ABC superfamily ATP binding cassette transporter, ABC protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D TPAMA_0962 putative macrolide ABC superfamily ATP binding cassette transporter, ABC/membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D TPAMA_0963 putative macrolide ABC superfamily ATP binding cassette transporter, ABC/membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D TPAMA_0964 putative macrolide ABC superfamily ATP binding cassette transporter, ABC protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D TPAMA_0611 sufC; ABC superfamily ATP binding cassette transporter, ABC protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D TPAMA_0901 norM; MATE family multi antimicrobial extrusion protein OR K26937 dinF; MATE family, multidrug efflux pump D TPAMA_0589 hpr; HPr family phosphotransferase system protein K02784 ptsH; phosphocarrier protein HPr D TPAMA_0755 ptsN; PTS family fructose/mannitol (fru) porter component IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TPAMA_0085 PTS family fructose (fru) porter component IIA K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D TPAMA_0917 mgtE; MgtE family magnesium (Mg2+)/cobalt (Co2+) transporter-E K06213 mgtE; magnesium transporter D TPAMA_0725 motA; Mot family proton (H+) or sodium (Na+) transporter MotA K02556 motA; chemotaxis protein MotA D TPAMA_0724 motB; Mot family proton (H+) or sodium (Na+) transporter MotB K02557 motB; chemotaxis protein MotB D TPAMA_0027 putative hemolysin HlyC K03699 tlyC; magnesium and cobalt exporter, CNNM family D TPAMA_0326 tp92; outer membrane protein K07277 SAM50; outer membrane protein insertion porin family D TPAMA_0785 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D TPAMA_0649 tlyC; putative hemolysin K06189 corC; hemolysin (HlyC) family protein D TPAMA_1034 CaCA family calcium (Ca2+):cation antiporter K07301 yrbG; cation:H+ antiporter D TPAMA_0140 Trk family potassium (K+) transporter, membrane protein K03498 trkH; trk/ktr system potassium uptake protein D TPAMA_0024 Trk family potassium (K+) transporter, NAD+ binding protein K03499 trkA; trk/ktr system potassium uptake protein D TPAMA_0139 Trk family potassium (K+) transporter, NAD+ binding protein K03499 trkA; trk/ktr system potassium uptake protein D TPAMA_0513 trkA; Trk family potassium (K+) transporter, membrane protein K03499 trkA; trk/ktr system potassium uptake protein D TPAMA_0771 nptA; PnaS family phosphate:sodium (Na+) symporter K03324 yjbB; phosphate:Na+ symporter D TPAMA_0516 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D TPAMA_0387 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D TPAMA_0972 ftr1; ILT iron/lead superfamily transporter K07243 FTR; high-affinity iron transporter D TPAMA_0971 tpd; tp34 lipoprotein K07230 p19; periplasmic iron binding protein D TPAMA_0470 hypothetical protein K03646 tolA; colicin import membrane protein D TPAMA_0057 oadB; oxaloacetate decarboxylase subunit beta K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1] D TPAMA_0056 oadA; oxaloacetate decarboxylase subunit alpha K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D TPAMA_0055 oadG; oxaloacetate decarboxylase subunit gamma K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma D TPAMA_0101 ccdA; DsbD family disulfide bond dehydrogenase D K06196 ccdA; cytochrome c-type biogenesis protein D TPAMA_0965 macA; membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system D TPAMA_0774 mgtC; putative MgtC family magnesium (Mg2+) transporter-C K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:tpo02044] D TPAMA_0364 cheW1; chemotaxis protein CheW K02659 pilI; twitching motility protein PilI D TPAMA_0668 putative membrane protein K02221 yggT; YggT family protein D TPAMA_0274 dctD; dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D TPAMA_0714 flhA; IIISP family Type III (virulence-related) secretory pathway protein K02400 flhA; flagellar biosynthesis protein FlhA D TPAMA_0715 flhB; IIISP family Type III (virulence-related) secretory pathway protein K02401 flhB; flagellar biosynthesis protein FlhB D TPAMA_0911 hypothetical protein K04061 flhB2; flagellar biosynthesis protein D TPAMA_0399 fliF; IIISP family Type III (virulence-related) secretory pathway protein K02409 fliF; flagellar M-ring protein FliF D TPAMA_0401 fliH; IIISP family Type III (virulence-related) secretory pathway protein K02411 fliH; flagellar assembly protein FliH D TPAMA_0402 fliI; IIISP family Type III (virulence-related) secretory pathway protein K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TPAMA_0720 fliY; bifunctional chemotaxis protein CheC/flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN D TPAMA_0719 fliO; putative flagellar biogenesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D TPAMA_0718 fliP; IIISP family Type III (virulence-related) secretory pathway protein K02419 fliP; flagellar biosynthesis protein FliP D TPAMA_0717 fliQ; IIISP family Type III (virulence-related) secretory pathway protein K02420 fliQ; flagellar biosynthesis protein FliQ D TPAMA_0716 fliR; IIISP family Type III (virulence-related) secretory pathway protein K02421 fliR; flagellar biosynthesis protein FliR D TPAMA_0379 secA; Sec family Type I general secretory pathway protein SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D TPAMA_0410 secD; RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter K03072 secD; preprotein translocase subunit SecD D TPAMA_0235 secE; Sec family Type I general secretory pathway protein, subunit SecE K03073 secE; preprotein translocase subunit SecE D TPAMA_0411 secF; RND superfamily resistance-nodulation-cell division protein:proton (H+) antiporter K03074 secF; preprotein translocase subunit SecF D TPAMA_0536 hypothetical protein K03075 secG; preprotein translocase subunit SecG D TPAMA_0208 secY; Sec family Type I general secretory pathway protein SecY K03076 secY; preprotein translocase subunit SecY D TPAMA_0416 ffh; Sec family Type I general secretory pathway protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D TPAMA_0578 ftsY; Sec family Type I general secretory pathway protein K03110 ftsY; fused signal recognition particle receptor D TPAMA_0409a yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D TPAMA_0949 oxaA; Oxa1 family cytochrome oxidase biogenesis protein K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:tpo02042] D TPAMA_0027 putative hemolysin HlyC K03699 tlyC; magnesium and cobalt exporter, CNNM family D TPAMA_1037 hlyIII; putative hemolysin III K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:tpo02022] D TPAMA_0363 cheA; sensor histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPAMA_0366 cheY; response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPAMA_0631 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] C 02035 Bacterial motility proteins [BR:tpo02035] D TPAMA_0363 cheA; sensor histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D TPAMA_0439 cheW2; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D TPAMA_0365 cheX; putative chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D TPAMA_0630 cheR; protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D TPAMA_0631 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D TPAMA_0366 cheY; response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D TPAMA_0040 mcp1; putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0488 mcp2; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0639 mcp3; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0640 mcp4; methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D TPAMA_0401 fliH; IIISP family Type III (virulence-related) secretory pathway protein K02411 fliH; flagellar assembly protein FliH D TPAMA_0402 fliI; IIISP family Type III (virulence-related) secretory pathway protein K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D TPAMA_0403 fliJ; flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D TPAMA_0719 fliO; putative flagellar biogenesis protein FliO K02418 fliO; flagellar protein FliO/FliZ D TPAMA_0718 fliP; IIISP family Type III (virulence-related) secretory pathway protein K02419 fliP; flagellar biosynthesis protein FliP D TPAMA_0717 fliQ; IIISP family Type III (virulence-related) secretory pathway protein K02420 fliQ; flagellar biosynthesis protein FliQ D TPAMA_0716 fliR; IIISP family Type III (virulence-related) secretory pathway protein K02421 fliR; flagellar biosynthesis protein FliR D TPAMA_0714 flhA; IIISP family Type III (virulence-related) secretory pathway protein K02400 flhA; flagellar biosynthesis protein FlhA D TPAMA_0715 flhB; IIISP family Type III (virulence-related) secretory pathway protein K02401 flhB; flagellar biosynthesis protein FlhB D TPAMA_0026 fliG1; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D TPAMA_0400 fliG2; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D TPAMA_0721 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D TPAMA_0720 fliY; bifunctional chemotaxis protein CheC/flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN D TPAMA_0399 fliF; IIISP family Type III (virulence-related) secretory pathway protein K02409 fliF; flagellar M-ring protein FliF D TPAMA_0722 fliL2; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D TPAMA_0377 fliL1; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D TPAMA_0398 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D TPAMA_0396 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D TPAMA_0397 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D TPAMA_0728 flgD; flagellar basal body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D TPAMA_0961 flgG2; flagellar basal body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF D TPAMA_0960 flgG1; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D TPAMA_0959 flgJ; putative flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D TPAMA_0727 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D TPAMA_0660 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D TPAMA_0659 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL D TPAMA_0868 flaB2; flagellar filament core protein FlaB K02406 fliC; flagellin D TPAMA_0870 flaB3; flagellar filament core protein FlaB K02406 fliC; flagellin D TPAMA_0792 flaB1; flagellar filament core protein FlaB K02406 fliC; flagellin D TPAMA_0872 fliD; flagellar hook-associated protein FliD K02407 fliD; flagellar hook-associated protein 2 D TPAMA_0943 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D TPAMA_0709 whiG; DNA-directed RNA polymerase sigma subunit WhiG K02405 fliA; RNA polymerase sigma factor FliA D TPAMA_0725 motA; Mot family proton (H+) or sodium (Na+) transporter MotA K02556 motA; chemotaxis protein MotA D TPAMA_0724 motB; Mot family proton (H+) or sodium (Na+) transporter MotB K02557 motB; chemotaxis protein MotB D TPAMA_0658 fliW; flagellar assembly protein FliW K13626 fliW; flagellar assembly factor FliW D TPAMA_0567 hypothetical protein K02383 flbB; flagellar protein FlbB D TPAMA_0726 flbD; flagellar protein FlbD K02385 flbD; flagellar protein FlbD D TPAMA_0713 flhF; flagellar-associated GTP-binding protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D TPAMA_0712 fleN1; putative flagellar synthesis regulator FleN K04562 flhG; flagellar biosynthesis protein FlhG D TPAMA_0853 fleN2; putative flagellar synthesis regulator FleN K04562 flhG; flagellar biosynthesis protein FlhG D TPAMA_0364 cheW1; chemotaxis protein CheW K02659 pilI; twitching motility protein PilI C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:tpo04812] D TPAMA_0497 mreB; cell shape determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D TPAMA_0390 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TPAMA_0389 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D TPAMA_0272 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein D TPAMA_0271 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:tpo04147] D TPAMA_0984 htpG; chaperone HtpG K04079 HSP90A; molecular chaperone HtpG D TPAMA_0817 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D TPAMA_0844 gap; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D TPAMA_0538 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D TPAMA_0030 groEL; chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D TPAMA_0216 dnaK; chaperone DnaK K04043 dnaK; molecular chaperone DnaK D TPAMA_0475 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D TPAMA_0187 tufA; elongation factor EF1A K02358 tuf; elongation factor Tu D TPAMA_0145 fadD1; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D TPAMA_0595 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D TPAMA_1039 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D TPAMA_0418 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D TPAMA_0478 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D TPAMA_0537 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D TPAMA_0168 phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:tpo02048] D TPAMA_0810 dam; site-specific DNA-methyltransferase (adenine-specific) K06223 dam; DNA adenine methylase [EC:2.1.1.72] D TPAMA_0390 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D TPAMA_0497 mreB; cell shape determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D TPAMA_0673 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D TPAMA_0863 nifS; bifunctional cysteine sulfinate desulfinase/cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:tpo04090] C 01504 Antimicrobial resistance genes [BR:tpo01504] D TPAMA_0221 vanY; serine-type D-Ala-D-Ala carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D TPAMA_0965 macA; membrane-fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:tpo00537] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:tpo03100] D TPAMA_t0012 tRNA-Ile K14218 tRNA-Ala; tRNA Ala D TPAMA_t0041 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPAMA_t0045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D TPAMA_t0003 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0030 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0026 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D TPAMA_t0024 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D TPAMA_t0028 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D TPAMA_t0025 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D TPAMA_t0006 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPAMA_t0018 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D TPAMA_t0007 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPAMA_t0008 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D TPAMA_t0017 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPAMA_t0023 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D TPAMA_t0032 tRNA-His K14226 tRNA-His; tRNA His D TPAMA_t0015 tRNA-Ala K14227 tRNA-Ile; tRNA Ile D TPAMA_t0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0010 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0022 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D TPAMA_t0021 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPAMA_t0039 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D TPAMA_t0029 tRNA-Met K14230 tRNA-Met; tRNA Met D TPAMA_t0011 tRNA-Met K14230 tRNA-Met; tRNA Met D TPAMA_t0037 tRNA-Met K14230 tRNA-Met; tRNA Met D TPAMA_t0033 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D TPAMA_t0027 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPAMA_t0034 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPAMA_t0038 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D TPAMA_t0001 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPAMA_t0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPAMA_t0004 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPAMA_t0005 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D TPAMA_t0013 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPAMA_t0019 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPAMA_t0042 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D TPAMA_t0014 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D TPAMA_t0020 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D TPAMA_t0009 tRNA-Val K14237 tRNA-Val; tRNA Val D TPAMA_t0043 tRNA-Val K14237 tRNA-Val; tRNA Val D TPAMA_t0036 tRNA-Val K14237 tRNA-Val; tRNA Val D TPAMA_r0001 rrs1; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPAMA_r0004 rrs2; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D TPAMA_r0002 rrl1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPAMA_r0005 rrl2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D TPAMA_r0003 rrf1; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPAMA_r0006 rrf2; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D TPAMA_nc0001 bacterial signal recognition particle RNA K01983 ffs; SRP RNA D TPAMA_nc0003 bacterial Rnase P class A K01978 rnpB; M1 RNA D TPAMA_nc0002 tmRNA; tmRNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D TPAMA_0633 bifunctional peptide-methionine (S)-S-oxide reductase/peptide-methionine (R)-S-oxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] D TPAMA_0509 ahpC; peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D TPAMA_0823 sorA; putative superoxide reductase K05919 dfx; superoxide reductase [EC:1.15.1.2] D TPAMA_0736 ferredoxin--NADP(+) reductase, subunit alpha K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D TPAMA_0252 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D TPAMA_0417 int; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D TPAMA_0852 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D TPAMA_0796 hypothetical protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D TPAMA_0826 conserved hypothetical membrane protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D TPAMA_0591 hprK; bifunctional Hpr kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D TPAMA_0902 putative esterase/lipase K03928 yvaK; carboxylesterase [EC:3.1.1.1] D TPAMA_0156 putative 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D TPAMA_0979 tatD1; magnesium (Mg2+)-dependent deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D TPAMA_0994 tatD2; magnesium (Mg2+)-dependent deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D TPAMA_0757 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D TPAMA_0615 SUF system FeS assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins D TPAMA_0925 nitrogenase (flavodoxin) K03839 fldA; flavodoxin I C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism C 99987 Cofactor metabolism C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D TPAMA_0924 tex; transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D TPAMA_0506 tig; peptidylprolyl isomerase K03545 tig; trigger factor D TPAMA_0184 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D TPAMA_0866 hypothetical protein K07391 comM; magnesium chelatase family protein C 99976 Replication and repair D TPAMA_0913 hypothetical protein K07460 yraN; putative endonuclease D TPAMA_0393 dprA; SMF family protein K04096 smf; DNA processing protein C 99979 Viral proteins C 99998 Others B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D TPAMA_0106 betT; BCCT family betaine/carnitine/choline transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family D TPAMA_0023 NSS family probable amino acid:sodium (Na+) symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D TPAMA_0414 alsT1; AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TPAMA_0998 alsT2; sodium/alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D TPAMA_0265 LIVCS family branched chain amino acid:cation symporter K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family C 99978 Cell growth D TPAMA_0948 jag; Jag family protein K06346 jag; spoIIIJ-associated protein C 99993 Cell motility C 99995 Signaling proteins C 99992 Structural proteins C 99994 Others B B 09194 Poorly characterized C 99996 General function prediction only D TPAMA_0522 conserved hypothetical membrane protein K03558 cvpA; membrane protein required for colicin V production D TPAMA_1033 patatin family phospholipase K07001 K07001; NTE family protein D TPAMA_0407 HAD family hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D TPAMA_0158 HAD-superfamily hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D TPAMA_0612 sufB; ABC superfamily ATP binding cassette transporter, membrane protein K09014 sufB; Fe-S cluster assembly protein SufB D TPAMA_0571 LemA family protein K03744 lemA; LemA protein D TPAMA_0312 conserved hypothetical membrane protein K08974 K08974; putative membrane protein D TPAMA_0570 conserved hypothetical membrane protein K08988 K08988; putative membrane protein C 99997 Function unknown D TPAMA_0835 hypothetical protein K06867 K06867; uncharacterized protein D TPAMA_0502 hypothetical protein K06867 K06867; uncharacterized protein D TPAMA_0561 hypothetical protein K06872 K06872; uncharacterized protein D TPAMA_0906 putative RNA-binding protein K06960 K06960; uncharacterized protein D TPAMA_0815 putative GNAT family acetyltransferase K06976 K06976; uncharacterized protein D TPAMA_0790 putative RND superfamily resistance-nodulation-cell division antibiotic:proton (H+) antiporter K07003 K07003; uncharacterized protein D TPAMA_0544 hypothetical protein K07004 K07004; uncharacterized protein D TPAMA_0038 pfoR; putative regulatory protein PfoR K07035 K07035; uncharacterized protein D TPAMA_0937 putative phosphoesterase K07095 K07095; uncharacterized protein D TPAMA_0050 putative phosphoribosyltransferase K07101 K07101; uncharacterized protein D TPAMA_0494 hypothetical protein K07164 K07164; uncharacterized protein D TPAMA_0949a hypothetical protein K08998 K08998; uncharacterized protein D TPAMA_0087 hypothetical protein K09005 K09005; uncharacterized protein D TPAMA_0710 hypothetical protein K09749 K09749; uncharacterized protein D TPAMA_0829 conserved hypothetical membrane protein K09766 K09766; uncharacterized protein D TPAMA_0845 hypothetical protein K09768 K09768; uncharacterized protein D TPAMA_0153 putative phosphatidate phosphatase K09775 K09775; uncharacterized protein D TPAMA_0565 hypothetical protein K09795 K09795; uncharacterized protein D TPAMA_0744 hypothetical protein K07584 ysxB; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 27, 2024