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Transcription Machinery - Thalassiosira pseudonana
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E THAPSDRAFT_168 RPB1; DNA directed RNA polymerase II, largest subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E THAPSDRAFT_40925 RPB21; DNA directed RNA polymerase II, second largest subunit K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E THAPSDRAFT_16440 RP3A; RP3A,-like protein to dna-directed RNA polymerase II third largest subunit K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E THAPSDRAFT_36330 RpbY; probable dna-directed RNA polymerase II 13.6 kDa polypeptide K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E THAPSDRAFT_9746 predicted protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E THAPSDRAFT_6383 19kDa subunit of RNA polymerase K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E THAPSDRAFT_39536 predicted protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E THAPSDRAFT_268816 RPB5; RPB5,-like protein to RNA polymerase i K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E THAPSDRAFT_262598 dna-directed RNA polymerase i K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E THAPSDRAFT_38815 Rpb8; RNA polymerase K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E THAPSDRAFT_20469 DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
E THAPSDRAFT_264095 TF2D2; transcription factor IID, TATA box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E THAPSDRAFT_269515 WD40-repeat protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E THAPSDRAFT_3021 predicted protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E THAPSDRAFT_8432 predicted protein K03132 TAF7; transcription initiation factor TFIID subunit 7
D TFIIE
E THAPSDRAFT_10349 predicted protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFIIF
D TFIIH
E THAPSDRAFT_21705 predicted protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E THAPSDRAFT_33946 predicted protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E THAPSDRAFT_24004 predicted protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E THAPSDRAFT_260943 transcription factor of TFIIH family K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E THAPSDRAFT_33970 predicted protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E THAPSDRAFT_268868 ERCC2; nucleotide excision repair protein ERCC2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E THAPSDRAFT_15887 cdc2/cdc28 protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E THAPSDRAFT_21633 predicted protein K06634 CCNH; cyclin H
C Mediator complex
D Head
D Middle
E THAPSDRAFT_19937 predicted protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
E THAPSDRAFT_15161 histone acetyl transferase, gcn5-related K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E THAPSDRAFT_25613 predicted protein K08874 TRRAP; transformation/transcription domain-associated protein
E THAPSDRAFT_30969 predicted protein K11314 TADA2A; transcriptional adapter 2-alpha
E THAPSDRAFT_269515 WD40-repeat protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E THAPSDRAFT_3021 predicted protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E THAPSDRAFT_8432 predicted protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E THAPSDRAFT_21364 predicted protein K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E THAPS_35239 spliceosome associated factor 3b; 130kD spliceosome associated protein K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E THAPSDRAFT_25142 predicted protein K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
D SWI/SNF complex
E THAPSDRAFT_5001 predicted protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
D RSC complex
E THAPSDRAFT_5001 predicted protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
D Others
E THAPSDRAFT_5643 predicted protein K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
C Other transcription-related factors
D Transcription elongation factors
E THAPSDRAFT_8433 predicted protein K03145 TFIIS; transcription elongation factor S-II
E THAPSDRAFT_32339 transcription initiation protein spt4-like protein K15171 SUPT4H1; transcription elongation factor SPT4
E THAPSDRAFT_2897 predicted protein K15172 SUPT5H; transcription elongation factor SPT5
E THAPSDRAFT_269534 SUPT6H; SUPT6H,-like protein to suppressor of ty 6 K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E THAPSDRAFT_23085 predicted protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E THAPSDRAFT_22269 predicted protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E THAPSDRAFT_33033 predicted protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E THAPSDRAFT_19126 predicted protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E THAPSDRAFT_27365 serine threonine protein phosphatase K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E THAPSDRAFT_2538 serine threonine phosphatase K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E THAPSDRAFT_39936 serine threonine protein phosphatase K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E THAPSDRAFT_21839 predicted protein K06100 SYMPK; symplekin
E THAPSDRAFT_6458 predicted protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E THAPSDRAFT_20800 predicted protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E THAPSDRAFT_264317 hypothetical protein K10706 SETX; senataxin [EC:5.6.2.-]
E THAPSDRAFT_37790 predicted protein K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
E THAPSDRAFT_37574 predicted protein K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E THAPSDRAFT_2703 predicted protein K15175 CDC73; parafibromin
E THAPSDRAFT_268346 hypothetical protein K15176 CTR9; RNA polymerase-associated protein CTR9
E THAPSDRAFT_4757 predicted protein K15177 LEO1; RNA polymerase-associated protein LEO1
E THAPS_23469 predicted protein K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
E THAPSDRAFT_22716 predicted protein K15181 TH1L; negative elongation factor C/D
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
E THAPS_35723 predicted protein K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E THAPS_35248 predicted protein K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E THAPS_6961 predicted protein K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E THAPSDRAFT_17095 predicted protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E THAPSDRAFT_24451 predicted protein K17498 SPN1; transcription factor SPN1
E THAPSDRAFT_32779 predicted protein K24104 GPN; GPN-loop GTPase
E THAPSDRAFT_bd2107 ATP GTP binding protein K24104 GPN; GPN-loop GTPase
E THAPSDRAFT_11614 ATP binding protein K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E THAPSDRAFT_28816 RPC1; DNA directed RNA polymerase III, largest subunit K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E THAPSDRAFT_268010 RPC2; DNA directed RNA polymerase III, second largest subunit K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E THAPSDRAFT_42412 dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E THAPSDRAFT_263565 small RNA polymerase K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E THAPSDRAFT_269018 predicted protein K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E THAPSDRAFT_22031 predicted protein K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E THAPSDRAFT_264786 RPC6; RPC6, dna-directed RNA polymerases III 39 kDa polypeptide K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E THAPSDRAFT_263350 RPC25; RPC25,-like protein to dna-directed RNA polymerase III 25 kDa polypeptide K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E THAPSDRAFT_3718 predicted protein K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9
E THAPSDRAFT_37100 predicted protein K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E THAPSDRAFT_268816 RPB5; RPB5,-like protein to RNA polymerase i K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E THAPSDRAFT_262598 dna-directed RNA polymerase i K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E THAPSDRAFT_38815 Rpb8; RNA polymerase K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E THAPSDRAFT_20469 DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
D TFIIIB
E THAPSDRAFT_264095 TF2D2; transcription factor IID, TATA box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E THAPSDRAFT_2130 predicted protein K15196 BRF1; transcription factor IIIB 90 kDa subunit
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E THAPSDRAFT_40884 RPA1; DNA directed RNA polymerase i, alpha subunit K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E THAPSDRAFT_36845 RPA2_1; DNA directed RNA polymerase i, second largest subunit K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E THAPSDRAFT_42412 dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E THAPSDRAFT_263565 small RNA polymerase K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E THAPSDRAFT_21933 predicted protein K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E THAPSDRAFT_20688 predicted protein K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E THAPSDRAFT_39698 predicted protein K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12
D Pol I, II, III common subunits
E THAPSDRAFT_268816 RPB5; RPB5,-like protein to RNA polymerase i K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E THAPSDRAFT_262598 dna-directed RNA polymerase i K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E THAPSDRAFT_38815 Rpb8; RNA polymerase K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E THAPSDRAFT_20469 DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E THAPSDRAFT_264095 TF2D2; transcription factor IID, TATA box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C Other transcription-related factors
D UBF
D Transcription initiation factors
E THAPSDRAFT_25139 predicted protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E THAPSDRAFT_3693 predicted protein K15223 UAF30; upstream activation factor subunit UAF30
D Transcription elongation factors
E THAPSDRAFT_32339 transcription initiation protein spt4-like protein K15171 SUPT4H1; transcription elongation factor SPT4
E THAPSDRAFT_2897 predicted protein K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E THAPSDRAFT_12403 atpase-like protein K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
E THAPSDRAFT_10349 predicted protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024