+E Transcription factors KO #

  Transcription Factors - Thiosulfativibrio zosterae

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family D THMIRHAT_00510 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D THMIRHAT_18620 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D THMIRHAT_19170 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D THMIRHAT_21390 LysR family transcriptional regulator K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator C DeoR family C LacI family C GntR family C TetR/AcrR family D THMIRHAT_21260 hypothetical protein K22106 fatR; TetR/AcrR family transcriptional regulator, repressor of fatR-cypB operon C Lrp/AsnC family D THMIRHAT_07090 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family C MerR family D THMIRHAT_09170 hypothetical protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D THMIRHAT_16180 fur; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family C CRP/FNR family D THMIRHAT_12580 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D THMIRHAT_13450 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D THMIRHAT_20490 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D THMIRHAT_17410 transcriptional regulator FNR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D THMIRHAT_07140 putative HTH-type transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor C ArsR family D THMIRHAT_03320 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D THMIRHAT_14520 transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D THMIRHAT_02500 hypothetical protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D THMIRHAT_06090 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D THMIRHAT_08740 hypothetical protein K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D THMIRHAT_11980 transcriptional regulator K15836 fhlA; formate hydrogenlyase transcriptional activator D THMIRHAT_15050 hypothetical protein K02584 nifA; Nif-specific regulatory protein D THMIRHAT_02690 modE; ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D THMIRHAT_06440 ModE family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D THMIRHAT_22870 transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family D THMIRHAT_16420 putative nickel-responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families B Other transcription factors C BglG family C Others D THMIRHAT_18560 bolA; DNA-binding transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D THMIRHAT_01380 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D THMIRHAT_19000 hypothetical protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D THMIRHAT_23010 DNA-binding protein K07733 alpA; prophage regulatory protein D THMIRHAT_04940 UPF0301 protein K07735 algH; putative transcriptional regulator D THMIRHAT_14400 dksA; RNA polymerase-binding transcription factor DksA K06204 dksA; RNA polymerase-binding transcription factor D THMIRHAT_10220 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D THMIRHAT_06470 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0