+D GENES KO
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KEGG Orthology (KO) - Aliivibrio fischeri ES114
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:vfi00010]
D VF_0304 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VF_0264 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VF_0209 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D VF_0443 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D VF_0206 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D VF_0913 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D VF_0442 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D VF_0202 gpmM; phosphoglycero mutase III, cofactor-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D VF_2075 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VF_2258 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VF_A0494 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VF_1242 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D VF_2181 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D VF_2179 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_0648 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0645 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0918 adhE; fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VF_1188 yiaY; predicted Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VF_2383 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VF_A0356 galM; galactose-1-epimerase (mutarotase) K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D VF_0816 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VF_0912 yeaD; conserved protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D VF_2478 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D VF_0605 bglA; 6-phospho-beta-glucosidase A K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D VF_1897 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VF_1732 ptsG; fused glucose-specific PTS enzymes: IIB component/IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D VF_1719 malX; fused maltose and glucose-specific PTS enzymes: IIB component/IIC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VF_A0786 PTS system, glucose-specific II BC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:vfi00020]
D VF_0818 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D VF_2158 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D VF_1775 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D VF_0823 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D VF_0824 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_0826 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D VF_0825 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D VF_0821 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VF_0822 sdhB; succinate dehydrogenase, Fe-S subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VF_0819 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D VF_0820 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D VF_2334 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VF_2335 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VF_2336 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D VF_2337 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D VF_1180 fumB; anaerobic class I fumarate hydratase (fumarase B) K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D VF_A0063 yggD; predicted DNA-binding transcriptional regulator K01774 fumE; fumarate hydratase E [EC:4.2.1.2]
D VF_0276 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VF_2478 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D VF_2181 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D VF_2179 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:vfi00030]
D VF_0304 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D VF_A0468 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D VF_A0469 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D VF_A0470 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D VF_2288 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D VF_0440 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D VF_A0686 tktB; transketolase 2 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D VF_A0685 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2]
D VF_2105 rpiA; ribose 5-phosphate isomerase, constitutive K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D VF_0504 deoC; 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D VF_1448 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D VF_0506 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D VF_0816 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VF_0764 prs; phosphoribosylpyrophosphate synthase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D VF_A0987 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VF_0090 eda; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VF_A0988 kdgK; ketodeoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D VF_0443 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D VF_0264 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VF_0209 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:vfi00040]
D VF_A0998 kduI; predicted 5-keto 4-deoxyuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D VF_A0997 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D VF_0342 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VF_2288 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:vfi00051]
D VF_A0710 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D VF_1056 phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VF_0264 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VF_0209 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D VF_A0062 yggP; predicted dehydrogenase K19956 sorE; L-sorbose 1-phosphate reductase [EC:1.1.1.-]
D VF_A0941 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D VF_0443 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D VF_0206 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D VF_A0369 PTS system, fructose-like-1 IIA component K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D VF_A0712 hypothetical protein K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D VF_A0940 fruA; fused fructose-specific PTS enzymes: IIBcomponent/IIC components K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D VF_A0060 cmtB; predicted mannitol-specific enzyme IIA component of PTS K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D VF_A0061 cmtA; predicted fused mannitol-specific PTS enzymes: IIB component/IIC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
C 00052 Galactose metabolism [PATH:vfi00052]
D VF_A0356 galM; galactose-1-epimerase (mutarotase) K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D VF_A0355 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D VF_A0353 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D VF_0201 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VF_A0352 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VF_0342 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VF_0816 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VF_A0347 ebgA; evolved beta-D-galactosidase, alpha subunit K12111 ebgA; evolved beta-galactosidase subunit alpha [EC:3.2.1.23]
D VF_A0346 ebgC; evolved beta-D-galactosidase, beta subunit K12112 ebgC; evolved beta-galactosidase subunit beta
D VF_A0301 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VF_A0989 kbaY; tagatose 6-phosphate aldolase 1, kbaY subunit K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D VF_A1005 kbaZ; tagatose 6-phosphate aldolase 1, kbaZ subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D VF_A1000 PTS system, N-acetylgalactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D VF_A1003 agaV; N-acetylgalactosamine-specific enzyme IIB component of PTS K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D VF_A1002 agaC; PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D VF_A1001 agaD; N-acetylgalactosamine-specific enzyme IID component of PTS K02747 agaE; N-acetylgalactosamine PTS system EIID component
D VF_A0999 nagA3; N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D VF_A1004 agaS; tagatose-6-phosphate ketose/aldose isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism
D VF_A0130 PTS system, 3-keto-L-gulonate specific IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D VF_A0128 PTS system, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D VF_A0129 ulaA; L-ascorbate-specific enzyme IIC component of PTS K03475 ulaA; ascorbate PTS system EIIC component
C 00500 Starch and sucrose metabolism [PATH:vfi00500]
D VF_0342 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VF_A0884 bcsA; cellulose synthase, catalytic subunit K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D VF_0607 PTS system, cellobiose-utilization IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D VF_0604 PTS system, cellobiose-utilization IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D VF_0603 PTS system, cellobiose-utilization IIC component K02761 celB; cellobiose PTS system EIIC component
D VF_0605 bglA; 6-phospho-beta-glucosidase A K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D VF_0182 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D VF_A0806 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D VF_A0805 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D VF_A0808 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D VF_A0810 malP; maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D VF_0017 malS; alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D VF_1132 alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D VF_2049 malZ; maltodextrin glucosidase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D VF_A0809 malQ; 4-alpha-glucanotransferase (amylomaltase) K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D VF_1897 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VF_1719 malX; fused maltose and glucose-specific PTS enzymes: IIB component/IIC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VF_A0801 glgX; glycogen debranching enzyme K01214 ISA; isoamylase [EC:3.2.1.68]
D VF_0816 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VF_0304 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:vfi00520]
D VF_0655 chiA; endochitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D VF_1598 exochitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D VF_A0493 nagZ; beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D VF_A1010 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_2146 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_0037 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_2147 N,N'-diacetylchitobiose phosphorylase K18675 chbP; N,N'-diacetylchitobiose phosphorylase [EC:2.4.1.280]
D VF_1897 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VF_0808 nagE; fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB components K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VF_A0438 nagE2; fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB components K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VF_1408 nagK; N-acetyl-D-glucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D VF_0665 nagA2; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D VF_0807 nagA1; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D VF_2357 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D VF_2145 N-acetylglucosamine kinase K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D VF_2372 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D VF_0481 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D VF_2562 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D VF_1115 murP; fused predicted PTS enzymes: IIB component/IIC component K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D VF_1114 murQ; predicted PTS component K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D VF_A0492 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D VF_0401 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D VF_2426 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D VF_0667 nanK; N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D VF_0666 nanE; N-acetylmannosamine-6-P epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D VF_0663 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D VF_0191 fnlA; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D VF_1732 ptsG; fused glucose-specific PTS enzymes: IIB component/IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D VF_1719 malX; fused maltose and glucose-specific PTS enzymes: IIB component/IIC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VF_A0786 PTS system, glucose-specific II BC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D VF_0816 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VF_0342 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VF_A0355 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D VF_A0353 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D VF_0201 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VF_A0352 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VF_0304 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D VF_A0710 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D VF_1056 phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D VF_0182 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D VF_0183 ddhB; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D VF_0184 ddhC; CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D VF_0181 ddhD; CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D VF_A0806 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:vfi00620]
D VF_2383 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VF_2181 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D VF_2179 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_1590 pflB; pyruvate formate lyase I K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VF_A0142 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VF_0918 adhE; fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VF_1188 yiaY; predicted Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VF_0648 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0645 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0837 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D VF_A0794 ackA2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VF_0836 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D VF_2258 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VF_A0494 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VF_1946 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D VF_2386 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D VF_2387 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D VF_1695 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D VF_1502 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D VF_1055 ldhA; fermentative D-lactate dehydrogenase, NAD-dependent K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D VF_1212 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D VF_0928 gloA; glyoxalase I, Ni-dependent K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D VF_A0119 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D VF_A0640 glyoxylase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D VF_1938 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D VF_1194 ycbL; predicted metal-binding enzyme K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D VF_1558 maeA; malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D VF_2272 maeB; fused malic enzyme predicted oxidoreductase/predicted phosphotransacetylase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D VF_0539 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D VF_0540 oadB; oxaloacetate decarboxylase beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D VF_2592 oadC; oxaloacetate decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D VF_0276 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VF_1180 fumB; anaerobic class I fumarate hydratase (fumarase B) K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D VF_A0063 yggD; predicted DNA-binding transcriptional regulator K01774 fumE; fumarate hydratase E [EC:4.2.1.2]
D VF_2334 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VF_2335 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VF_2336 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D VF_2337 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D VF_2308 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D VF_2478 pck; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D VF_1242 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D VF_1973 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D VF_A0257 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D VF_0295 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:vfi00630]
D VF_1972 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D VF_2383 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VF_1973 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D VF_A0257 malate synthase K01638 aceB; malate synthase [EC:2.3.3.9]
D VF_0276 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VF_0818 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D VF_2158 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D VF_A0009 katA; hydroperoxidase HPII(III) (catalase) KatA K03781 katE; catalase [EC:1.11.1.6]
D VF_2287 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D VF_0339 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VF_0098 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VF_0695 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D VF_A0703 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D VF_A0700 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_A0702 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D VF_2157 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D VF_A0987 2-dehydro-3-deoxyphosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VF_0090 eda; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VF_1360 fdnG; formate dehydrogenase N, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D VF_A0251 fdhF; formate dehydrogenase-H K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D VF_1359 fdnH; formate dehydrogenase N, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D VF_1358 fdnI; formate dehydrogenase N, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D VF_1714 purU; formyltetrahydrofolate hydrolase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:vfi00640]
D VF_2383 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VF_0837 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D VF_A0794 ackA2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VF_0836 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_1590 pflB; pyruvate formate lyase I K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VF_A0142 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VF_0023 yhdH; predicted oxidoreductase, Zn-dependent and NAD(P)-binding K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VF_1946 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D VF_2386 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D VF_2387 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D VF_1695 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D VF_0825 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D VF_0826 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D VF_2158 acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D VF_1621 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D VF_1678 yqhD; alcohol dehydrogenase, NAD(P)-dependent K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:vfi00650]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VF_0888 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D VF_0918 adhE; fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VF_0540 oadB; oxaloacetate decarboxylase beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D VF_0821 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VF_0822 sdhB; succinate dehydrogenase, Fe-S subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VF_0819 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D VF_0820 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D VF_2334 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VF_2335 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VF_2336 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D VF_2337 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D VF_1064 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VF_1590 pflB; pyruvate formate lyase I K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VF_A0142 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VF_2263 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_2556 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_0185 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_2262 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D VF_2557 ilvM; acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:vfi00660]
D VF_2263 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_2556 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_0185 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_2262 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D VF_2557 ilvM; acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D VF_0825 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D VF_0826 sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D VF_0293 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D VF_0292 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D VF_0294 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:vfi00562]
D VF_0614 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D VF_0206 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:vfi00190]
D VF_2364 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D VF_1143 ndh; respiratory NADH dehydrogenase 2/cupric reductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D VF_0821 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VF_0822 sdhB; succinate dehydrogenase, Fe-S subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VF_0819 sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D VF_0820 sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D VF_2334 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VF_2335 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VF_2336 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D VF_2337 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D VF_2220 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D VF_2218 cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D VF_2217 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D VF_1299 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D VF_1300 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D VF_1301 ccoQ; Cbb3-type cytochrome oxidase component FixQ family K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D VF_1302 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D VF_0953 cydA; cytochrome d terminal oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D VF_0954 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D VF_0955 ybgT; cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D VF_2566 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D VF_2564 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D VF_2565 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D VF_2567 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D VF_2563 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D VF_2570 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D VF_2568 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D VF_2569 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D VF_A0421 putative manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:vfi00680]
D VF_A0007 glutathione-dependent formaldehyde-activating enzyme K03396 gfa; S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22]
D VF_0648 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0645 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0644 yeiG; predicted esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D VF_1360 fdnG; formate dehydrogenase N, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D VF_A0251 fdhF; formate dehydrogenase-H K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D VF_1359 fdnH; formate dehydrogenase N, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D VF_1358 fdnI; formate dehydrogenase N, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D VF_0695 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D VF_0339 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VF_2075 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VF_2308 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D VF_0276 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VF_0443 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D VF_0264 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VF_0209 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VF_A0299 torA; trimethylamine N-oxide (TMAO) reductase I, catalytic subunit K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VF_A0298 torC; trimethylamine N-oxide reductase, cytochrome c-type subunit K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D VF_1571 torD; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I K03533 torD; TorA specific chaperone
D VF_A0189 torY; TMAO reductase III (TorYZ), cytochrome c-type subunit K07821 torY; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorY
D VF_A0188 torZ; TMAO reductase III (TorYZ), TorZ subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VF_A0990 trimethylamine-N-oxide reductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VF_0837 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D VF_A0794 ackA2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VF_0836 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D VF_2383 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VF_1242 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D VF_0202 gpmM; phosphoglycero mutase III, cofactor-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D VF_2106 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D VF_0899 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D VF_0509 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:vfi00910]
D VF_1905 napA; nitrate reductase, large, cytochrome C550 subunit, periplasmic K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D VF_1904 napB; nitrate reductase, small, cytochrome C550 subunit, periplasmic K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D VF_0776 nirB; nitrite reductase, large subunit, NAD(P)H-binding K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D VF_0775 nirD; nitrite reductase, NAD(P)H-binding, small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D VF_1554 nfrA; nitrite reductase, formate-dependent, cytochrome K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D VF_A0863 hcp; hydroxylamine reductase Hcp K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D VF_1284 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D VF_0098 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VF_2124 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D VF_2125 gltD; glutamate synthase, 4Fe-4S protein, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D VF_A1146 ybcF; predicted carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D VF_2174 can; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D VF_1651 A-type carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:vfi00920]
D VF_0321 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D VF_0320 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D VF_0323 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D VF_2462 cysQ; PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D VF_0312 cysH; 3'-phosphoadenosine 5'-phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D VF_0310 cysJ; sulfite reductase, alpha subunit, flavoprotein K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D VF_0311 cysI; sulfite reductase, beta subunit, NAD(P)-binding, heme-binding K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D VF_1387 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VF_A0101 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VF_2448 glpE; thiosulfate:cyanide sulfurtransferase (rhodanese) K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D VF_2347 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D VF_1579 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D VF_1893 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D VF_2063 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D VF_2267 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D VF_A0082 dmsA; dimethyl sulfoxide reductase, anaerobic, subunit A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D VF_A0081 ynfG; oxidoreductase, Fe-S subunit K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D VF_A0080 dmsC; dimethyl sulfoxide reductase, anaerobic, subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:vfi00061]
D VF_1946 accA; acetyl-CoA carboxylase, carboxytransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D VF_2386 accB; acetyl CoA carboxylase, BCCP subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D VF_2387 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D VF_1695 accD; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D VF_1739 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D VF_0847 acyl carrier protein K02078 acpP; acyl carrier protein
D VF_0846 acyl carrier protein K02078 acpP; acyl carrier protein
D VF_1741 fabD; malonyl-CoA:(acyl carrier protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D VF_1742 fabH; 3-oxoacyl-(acyl carrier protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D VF_0857 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VF_1700 fabB; 3-oxoacyl-(acyl-carrier-protein)-synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VF_1738 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VF_0860 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VF_0859 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VF_1740 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VF_1292 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D VF_1951 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D VF_0888 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D VF_0533 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_1708 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2256 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2264 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:vfi00071]
D VF_0024 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VF_1811 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VF_1932 fadE; acyl coenzyme A dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D VF_0533 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_1708 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2256 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2264 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_0648 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0645 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0918 adhE; fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VF_1188 yiaY; predicted Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:vfi00121]
D VF_A0241 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:vfi00561]
D VF_2157 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D VF_A0236 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D VF_2443 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D VF_1743 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D VF_2248 ygiH; conserved inner membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D VF_0402 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D VF_0418 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D VF_A0301 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:vfi00564]
D VF_2348 gpsA; glycerol-3-phosphate dehydrogenase (NAD+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D VF_A0239 glpD; aerobic glycerol-3-phosphate dehydrogenase GlpD K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D VF_A0250 glpA; sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding GlpA K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D VF_A0249 glpB; sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit GlpB K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D VF_A0248 glpC; sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit GlpC K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D VF_2443 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D VF_2248 ygiH; conserved inner membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D VF_0402 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D VF_0418 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D VF_1556 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D VF_2481 pldB; lysophospholipase L(2) K01048 pldB; lysophospholipase [EC:3.1.1.5]
D VF_A0958 glpQ; glycerophosphoryl diester phosphodiesterase GlpQ (UgpQ) K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D VF_1957 cdsA; CDP-diglyceride synthase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D VF_2428 pssA; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D VF_2331 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D VF_1625 pgsA; phosphatidylglycerophosphate synthetase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D VF_A0094 ynjF; predicted phosphatidyl transferase, inner membrane protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D VF_0706 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D VF_1544 phosphatidylglycerophosphatase B-like protein K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D VF_1606 cls; cardiolipin synthase 1 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:vfi00565]
D VF_1556 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:vfi00600]
D VF_A0301 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D VF_A1010 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_2146 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_0037 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D VF_1556 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D VF_1556 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:vfi00592]
D VF_1556 pldA; outer membrane phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D VF_0024 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VF_1811 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:vfi01040]
D VF_A0274 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D VF_A1044 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D VF_1577 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D VF_1258 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D VF_1024 yciA; predicted hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:vfi00230]
D VF_2232 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D VF_2463 nudE; ADP-ribose diphosphatase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D VF_0506 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D VF_0816 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VF_0764 prs; phosphoribosylpyrophosphate synthase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D VF_1691 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D VF_2395 purD; phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D VF_1929 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D VF_1487 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D VF_0652 purL; phosphoribosylformyl-glycineamide synthetase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D VF_1928 purM; phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D VF_2538 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D VF_2537 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D VF_1498 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D VF_1786 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D VF_2394 purH; fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D VF_1688 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D VF_A0396 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D VF_0778 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D VF_2070 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D VF_0911 gsk; inosine/guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D VF_A0696 inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D VF_A0402 deoD2; purine nucleoside phosphorylase deoD-type 2 K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VF_0507 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VF_A0968 deoD3; purine nucleoside phosphorylase deoD-type; PNP K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VF_A0554 hypothetical cytosolic protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D VF_0565 yfiH; conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D VF_2176 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D VF_A0019 hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D VF_0637 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D VF_0625 ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D VF_0560 yjjX; thiamin metabolism associated protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D VF_0425 rdgB; dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D VF_0738 gpt; guanine-hypoxanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D VF_0638 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D VF_A0695 guaC; GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D VF_A0969 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D VF_0106 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D VF_1202 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D VF_1201 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D VF_A0281 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D VF_1682 dgt; deoxyguanosine triphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D VF_0104 spoT; bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D VF_0054 gpp; guanosine pentaphosphatase/exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D VF_2080 relA; (p)ppGpp synthetase I/GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D VF_0067 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D VF_1256 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]
D VF_1062 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D VF_2318 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D VF_0093 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D VF_0595 ygdH; conserved protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D VF_0319 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D VF_1511 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D VF_0793 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D VF_2078 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D VF_2230 cpdA; cyclic 3',5'-adenosine monophosphate phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D VF_0285 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D VF_0323 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D VF_0321 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D VF_0320 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D VF_0673 ureC; Urea amidohydrolase, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D VF_0674 ureB; urea amidohydrolase, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D VF_0675 ureA; urea amidohydrolase, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D VF_A1146 ybcF; predicted carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:vfi00240]
D VF_0473 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D VF_0472 carA; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D VF_0406 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D VF_0405 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D VF_2507 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D VF_A0412 pyrC; dihydro-orotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D VF_1285 pyrD; dihydro-orotate oxidase, FMN-linked K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D VF_0112 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D VF_1755 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D VF_1960 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D VF_0625 ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D VF_2078 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D VF_0375 yhdE; conserved protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D VF_A0145 ygjP; predicted metal dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D VF_2076 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D VF_1760 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D VF_1752 udk; uridine/cytidine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D VF_A0396 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D VF_0778 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D VF_2070 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D VF_A0293 yjjG; dUMP phosphatase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D VF_1521 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D VF_A0530 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D VF_A0554 hypothetical cytosolic protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D VF_1927 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D VF_0319 cpdB; 2':3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D VF_1511 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D VF_0595 ygdH; conserved protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D VF_1485 cdd; cytidine/deoxycytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D VF_0531 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D VF_A0281 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D VF_1202 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D VF_1201 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D VF_A0917 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D VF_1735 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D VF_0505 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D VF_1599 tdk; thymidine kinase/deoxyuridine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D VF_0460 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:vfi00250]
D VF_A0283 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VF_2094 nadB; quinolinate synthase, L-aspartate oxidase (B protein) subunit K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D VF_1547 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D VF_1527 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D VF_1644 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D VF_0804 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D VF_1673 yfbQ; predicted aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D VF_0339 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VF_0903 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D VF_2353 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D VF_2304 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D VF_2303 argH; argininosuccinate lyase K14681 argHA; argininosuccinate lyase / amino-acid N-acetyltransferase [EC:4.3.2.1 2.3.1.1]
D VF_1062 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D VF_2318 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D VF_1786 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D VF_0406 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D VF_0405 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D VF_1064 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VF_2124 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D VF_2125 gltD; glutamate synthase, 4Fe-4S protein, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D VF_1284 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D VF_A0832 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D VF_0098 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VF_0473 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D VF_0472 carA; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D VF_0423 yneH; predicted glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D VF_2372 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D VF_1691 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:vfi00260]
D VF_0338 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_0537 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_A1125 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_2118 thrA; fused aspartokinase I and homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D VF_2266 metL; fused aspartokinase II/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D VF_1645 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VF_1698 usg; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VF_2117 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D VF_1458 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D VF_2116 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D VF_A0497 L-allo-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D VF_0695 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D VF_0339 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VF_2157 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D VF_0202 gpmM; phosphoglycero mutase III, cofactor-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D VF_2106 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D VF_0899 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D VF_0509 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D VF_A0418 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D VF_A0417 tdh; threonine 3-dehydrogenase, NAD(P)-binding K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D VF_A0703 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D VF_A0700 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_A0702 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
D VF_2428 pssA; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D VF_1176 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D VF_A0966 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D VF_2560 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D VF_A0624 ygeA; predicted racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D VF_0735 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D VF_1027 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D VF_1028 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D VF_A1123 ectB; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D VF_A1122 ectA; L-2,4-diaminobutyric acid acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178]
D VF_A1124 ectC; ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108]
C 00270 Cysteine and methionine metabolism [PATH:vfi00270]
D VF_2347 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D VF_1579 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D VF_1893 cysK; cysteine synthase A, O-acetylserine sulfhydrolase A subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D VF_1186 metC; cystathionine beta-lyase, PLP-dependent K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VF_1253 cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VF_1718 malY; bifunctional beta-cystathionase, PLP-dependent/regulator of maltose regulon K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VF_0337 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D VF_1721 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D VF_0439 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D VF_1037 ainS; C8-HSL autoinducer synthesis protein AinS K13062 ainS; acyl homoserine lactone synthase [EC:2.3.1.184]
D VF_A0924 luxI; 3-oxo-C6-HSL autoinducer synthesis protein LuxI K22954 luxI; acyl homoserine lactone synthase [EC:2.3.1.184]
D VF_1653 hypothetical protein K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D VF_2128 mtn; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D VF_0565 yfiH; conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D VF_1488 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D VF_1278 yebR; conserved protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D VF_0545 luxS; S-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D VF_0338 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_0537 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_A1125 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_2118 thrA; fused aspartokinase I and homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D VF_2266 metL; fused aspartokinase II/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D VF_1645 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VF_1698 usg; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VF_2063 metA; homoserine transsuccinylase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D VF_2267 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D VF_2558 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VF_0543 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D VF_0973 gshA2; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D VF_0435 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D VF_0976 glutathione synthetase, eukaryotic type K01920 gshB; glutathione synthase [EC:6.3.2.3]
D VF_A0283 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VF_1387 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VF_A0101 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VF_A0624 ygeA; predicted racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D VF_0735 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D VF_0276 mdh; malate dehydrogenase, NAD(P)-binding K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VF_1176 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D VF_A0966 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D VF_2106 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D VF_0899 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:vfi00280]
D VF_2558 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VF_0024 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VF_1811 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VF_A0173 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:vfi00290]
D VF_2560 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D VF_0293 leuC; 3-isopropylmalate isomerase subunit, dehydratase component K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D VF_0292 leuD; 3-isopropylmalate isomerase subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D VF_0294 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D VF_2263 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_2556 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_0185 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_2262 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D VF_2557 ilvM; acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D VF_2528 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D VF_2559 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D VF_2558 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VF_0014 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D VF_1673 yfbQ; predicted aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D VF_0295 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:vfi00300]
D VF_0338 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_0537 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_A1125 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_2118 thrA; fused aspartokinase I and homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D VF_2266 metL; fused aspartokinase II/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D VF_1645 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VF_1698 usg; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VF_1918 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D VF_0471 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D VF_0576 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D VF_2284 argD; bifunctional acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D VF_1914 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D VF_2484 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D VF_2485 lysA; diaminopimelate decarboxylase, PLP-binding K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D VF_A0852 ydcR; fused predicted DNA-binding transcriptional regulator/predicted amino transferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D VF_2206 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D VF_2205 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:vfi00310]
D VF_0824 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VF_A0624 ygeA; predicted racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D VF_0735 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D VF_2057 cadA; lysine decarboxylase 1 K01582 E4.1.1.18; lysine decarboxylase [EC:4.1.1.18]
D VF_1525 ydiJ; predicted FAD-linked oxidoreductase K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
C 00220 Arginine biosynthesis [PATH:vfi00220]
D VF_0407 argI; ornithine carbamoyltransferase 1 K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D VF_2304 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D VF_2303 argH; argininosuccinate lyase K14681 argHA; argininosuccinate lyase / amino-acid N-acetyltransferase [EC:4.3.2.1 2.3.1.1]
D VF_0673 ureC; Urea amidohydrolase, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D VF_0674 ureB; urea amidohydrolase, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D VF_0675 ureA; urea amidohydrolase, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D VF_0408 sagP; arginine deiminase SagP (ArcA) K01478 arcA; arginine deiminase [EC:3.5.3.6]
D VF_0423 yneH; predicted glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D VF_0098 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VF_1284 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D VF_A1146 ybcF; predicted carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D VF_A0283 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VF_1673 yfbQ; predicted aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D VF_0585 argA; fused acetylglutamate kinase-like (inactive)/amino acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D VF_2305 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D VF_2306 argC; N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D VF_2284 argD; bifunctional acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D VF_2307 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:vfi00330]
D VF_0531 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D VF_A0840 speA; biosynthetic arginine decarboxylase, PLP-binding K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D VF_A0839 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D VF_A0385 speG; spermidine N1-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D VF_1486 glutamyl-tRNA(Gln) amidotransferase, subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D VF_2283 astA; arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D VF_A0847 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D VF_2282 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D VF_1238 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D VF_0429 proC; pyrroline-5-carboxylate reductase, NAD(P)-binding K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D VF_A0832 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D VF_0740 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D VF_0741 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D VF_A0792 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D VF_A0283 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:vfi00340]
D VF_1012 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D VF_1019 hisI; fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D VF_1017 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D VF_1016 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D VF_1018 hisF; imidazole glycerol phosphate synthase, catalytic subunit with HisH K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D VF_1015 hisB; fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D VF_1014 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VF_1013 hisD; bifunctional histidinal dehydrogenase/histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D VF_0852 phenylalanine and histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D VF_A0450 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D VF_A0451 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D VF_A0453 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D VF_A0452 hutG; formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
C 00350 Tyrosine metabolism [PATH:vfi00350]
D VF_A0283 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VF_1014 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VF_1488 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D VF_0648 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0645 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0918 adhE; fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VF_1188 yiaY; predicted Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VF_0207 hpcD; 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
C 00360 Phenylalanine metabolism [PATH:vfi00360]
D VF_A0283 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VF_1014 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VF_1488 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D VF_A0739 yhhY; predicted acetyltransferase K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D VF_1486 glutamyl-tRNA(Gln) amidotransferase, subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00380 Tryptophan metabolism [PATH:vfi00380]
D VF_0824 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VF_1486 glutamyl-tRNA(Gln) amidotransferase, subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D VF_A0009 katA; hydroperoxidase HPII(III) (catalase) KatA K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:vfi00400]
D VF_0553 aroF; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VF_1241 aroH; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VF_A0394 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VF_2291 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D VF_2385 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D VF_2535 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D VF_2292 aroK; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71]
D VF_1761 aroA; 5-enolpyruvylshikimate-3-phosphate synthetase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D VF_1805 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D VF_1033 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D VF_2602 trpE2; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D VF_1032 trpD; glutamine amidotransferase (component II) of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D VF_1031 trpG; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D VF_1029 trpC; fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D VF_1027 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D VF_1028 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D VF_0554 tyrA; fused chorismate mutase T/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D VF_0561 pheA; fused chorismate mutase P/prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D VF_1270 cyclohexadienyl dehydratase precursor K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D VF_A0283 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VF_1014 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VF_1488 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:vfi00410]
D VF_1064 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VF_2170 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:vfi00430]
D VF_1064 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VF_A0086 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D VF_0903 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D VF_1284 NAD-specific glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D VF_0836 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D VF_0837 ackA; acetate kinase A and propionate kinase 2 K00925 ackA; acetate kinase [EC:2.7.2.1]
D VF_A0794 ackA2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
D VF_1249 phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9]
C 00450 Selenocompound metabolism [PATH:vfi00450]
D VF_2267 metB; cystathionine gamma-synthase, PLP-dependent K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D VF_1186 metC; cystathionine beta-lyase, PLP-dependent K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VF_1253 cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VF_1718 malY; bifunctional beta-cystathionase, PLP-dependent/regulator of maltose regulon K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VF_0337 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D VF_1721 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D VF_0902 trxB; thioredoxin reductase, FAD/NAD(P)-binding K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D VF_0321 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D VF_0320 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D VF_2508 L-seryl-tRNA selenium transferase family K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D VF_1754 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:vfi00460]
D VF_A0086 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D VF_1527 ansB; periplasmic L-asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D VF_1644 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D VF_0695 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:vfi00470]
D VF_0302 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D VF_A0570 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D VF_A0624 ygeA; predicted racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D VF_0735 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D VF_0423 yneH; predicted glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D VF_2433 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D VF_2203 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D VF_1547 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D VF_2484 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D VF_2485 lysA; diaminopimelate decarboxylase, PLP-binding K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:vfi00480]
D VF_A0086 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D VF_1376 ybgL; predicted lactam utilization protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D VF_0543 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D VF_0973 gshA2; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D VF_0435 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D VF_0976 glutathione synthetase, eukaryotic type K01920 gshB; glutathione synthase [EC:6.3.2.3]
D VF_0413 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D VF_0624 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D VF_1282 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D VF_0736 pepD; aminoacyl-histidine dipeptidase (peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D VF_A0821 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D VF_2489 gor; glutathione oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D VF_1775 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D VF_A0470 gnd; gluconate-6-phosphate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D VF_A0468 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D VF_2300 glutaredoxin K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:vfi00511]
D VF_A0347 ebgA; evolved beta-D-galactosidase, alpha subunit K12111 ebgA; evolved beta-galactosidase subunit alpha [EC:3.2.1.23]
D VF_A0346 ebgC; evolved beta-D-galactosidase, beta subunit K12112 ebgC; evolved beta-galactosidase subunit beta
D VF_A1010 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_2146 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_0037 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_A0106 beta-mannosidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
C 00540 Lipopolysaccharide biosynthesis [PATH:vfi00540]
D VF_1950 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D VF_2195 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D VF_1952 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D VF_1602 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D VF_1949 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D VF_A0425 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D VF_0179 kpsF; arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D VF_0392 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D VF_0176 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D VF_0772 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D VF_0177 3-deoxy-manno-octulosonate-8-phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D VF_0391 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D VF_0178 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D VF_A0427 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D VF_0138 waaA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D VF_A0687 htrB1; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D VF_0122 htrB2; lauryl-acyl carrier protein (ACP)-dependent acyltransferase (LpxL) K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D VF_1799 msbB; myristoyl-acyl carrier protein (ACP)-dependent acyltransferase (MsbB, LpxM) K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D VF_A0210 eptA; predicted metal dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D VF_0136 wavC; 3-deoxy-D-manno-octulosonic-acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D VF_1931 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D VF_2234 rfaE; fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D VF_0687 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D VF_0152 rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D VF_0139 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D VF_0151 waaL; O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:vfi00542]
D VF_0180 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:vfi00541]
D VF_0342 galU; glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VF_0201 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VF_A0352 galE; UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VF_0167 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D VF_0166 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VF_0186 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VF_0168 rfbC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D VF_0182 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D VF_0183 ddhB; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D VF_0184 ddhC; CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D VF_0181 ddhD; CDP-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D VF_A0710 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D VF_1056 phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D VF_2562 glmU; fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D VF_0191 fnlA; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D VF_0192 fnlB; UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K19068 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase [EC:1.1.1.367]
D VF_0193 rffE; UDP-N-acetyl glucosamine-2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28]
D VF_0197 UDP-D-quinovosamine 4-dehydrogenase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00550 Peptidoglycan biosynthesis [PATH:vfi00550]
D VF_0401 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D VF_2426 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D VF_2200 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D VF_2203 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D VF_2206 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D VF_A0570 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D VF_2205 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D VF_1958 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D VF_2245 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D VF_0856 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D VF_2204 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D VF_2201 murG; N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D VF_2298 mrcA; fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D VF_2162 mrcB; fused glycosyl transferase and transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D VF_0748 mrdA; transpeptidase (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D VF_1481 penicillin binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D VF_2207 ftsI; transpeptidase (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D VF_0745 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D VF_0474 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:vfi00552]
D VF_2245 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D VF_0180 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D VF_0197 UDP-D-quinovosamine 4-dehydrogenase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:vfi00543]
D VF_0180 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D VF_2347 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:vfi00730]
D VF_0032 thiC; thiamin (pyrimidine moiety) biosynthesis protein K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D VF_A0316 thiD; bifunctional hydroxy-methylpyrimidine kinase/hydroxy-phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D VF_0034 thiF; thiamin (thiazole moiety) biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D VF_0617 iscS; Sulfur mobilization protein for Fe-S synthesis, cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D VF_0716 thiI; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D VF_0036 thiH; thiamin biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D VF_0711 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D VF_0035 thiG; thiamin biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D VF_A0321 thiM; hydoxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D VF_0033 thiE; thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D VF_A0322 thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D VF_0705 thiL; thiamin-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D VF_2330 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D VF_A0018 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D VF_0793 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D VF_A0320 transcriptional activator TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:vfi00740]
D VF_1189 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D VF_0702 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D VF_0700 ribD; fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D VF_0703 ribH; riboflavin synthase, beta subunit K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D VF_1414 ribC; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D VF_0701 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D VF_0466 ribF; bifunctional riboflavin kinase/FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D VF_0062 fre; flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D VF_A0965 nfsA; nitroreductase A, NADPH-dependent, FMN-dependent K19285 nfrA1; FMN reductase (NADPH) [EC:1.5.1.38]
D VF_A0321 thiM; hydoxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D VF_2232 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D VF_0266 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:vfi00750]
D VF_A1161 pdxH; pyridoxine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D VF_2056 pdxY; pyridoxal kinase 2/pyridoxine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D VF_0441 epd; D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D VF_1699 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D VF_0899 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D VF_0287 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D VF_2084 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D VF_1458 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D VF_2116 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:vfi00760]
D VF_2094 nadB; quinolinate synthase, L-aspartate oxidase (B protein) subunit K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D VF_0965 nadA; quinolinate synthase, subunit A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D VF_2184 nadC; quinolinate phosphoribosyltransferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D VF_A0402 deoD2; purine nucleoside phosphorylase deoD-type 2 K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VF_0507 deoD; purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VF_A0968 deoD3; purine nucleoside phosphorylase deoD-type; PNP K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VF_A0396 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D VF_0778 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D VF_2070 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D VF_A0601 nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D VF_2078 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D VF_2403 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D VF_A0602 nadE; NAD synthetase, NH3/glutamine-dependent K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D VF_2591 cinA; CinA-related protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D VF_1320 cobB; deacetylase of acetyl-CoA synthetase, NAD-dependent K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D VF_1997 nadK; NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D VF_2439 sthA; pyridine nucleotide transhydrogenase, soluble K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D VF_A0586 pntA; pyridine nucleotide transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D VF_A0585 pntB; pyridine nucleotide transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:vfi00770]
D VF_2263 ilvI; acetolactate synthase III, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_2556 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_0185 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VF_2262 ilvH; acetolactate synthase III, thiamin-dependent, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D VF_2557 ilvM; acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D VF_2528 ilvC; ketol-acid reductoisomerase, NAD(P)-binding K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D VF_2559 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D VF_2169 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D VF_A0628 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D VF_0718 panE; 2-dehydropantoate reductase, NADPH-specific K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D VF_2170 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D VF_2424 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D VF_0125 dfp; fused 4'-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN-binding K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D VF_2078 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D VF_0132 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D VF_2189 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D VF_2083 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D VF_2558 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VF_0892 glutamate decarboxylase K24264 panP; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:vfi00780]
D VF_A0746 bioC; biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D VF_0857 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VF_1700 fabB; 3-oxoacyl-(acyl-carrier-protein)-synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VF_1738 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VF_0860 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VF_0859 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VF_1740 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VF_1951 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D VF_0118 bioH; carboxylesterase of pimeloyl-CoA synthesis K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D VF_A0747 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D VF_A0748 bioA; 7,8-diaminopelargonic acid synthase, PLP-dependent K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D VF_A0745 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D VF_A1189 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D VF_2425 birA; BirA transcriptional repressor, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:vfi00785]
D VF_0743 lipB; lipoyl-protein ligase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D VF_0742 lipA; lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2181 aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D VF_2179 aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D VF_0823 sucA; 2-oxoglutarate decarboxylase, thiamin-requiring K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D VF_0824 sucB; dihydrolipoyltranssuccinase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D VF_A0703 gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D VF_A0700 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D VF_A0702 gcvH; glycine cleavage complex lipoylprotein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:vfi00790]
D VF_1607 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D VF_1352 MutT/nudix family protein K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D VF_2247 folB; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D VF_2168 folK; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D VF_2246 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D VF_0480 folP; 7,8-dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D VF_0284 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D VF_1694 folC; bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D VF_1189 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D VF_0702 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D VF_2285 pabA; aminodeoxychorismate synthase, subunit II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D VF_1179 pabB; aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D VF_1737 pabC; 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D VF_1160 sscR; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D VF_A0495 ygcF; conserved protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D VF_1580 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D VF_0598 queF; hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D VF_0940 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D VF_0941 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D VF_0943 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D VF_A0565 mog; predicted molybdochelatase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D VF_1608 moeA; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D VF_1406 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D VF_1405 mobA; molybdopterin-guanine dinucleotide synthase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:vfi00670]
D VF_0284 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D VF_1793 fhs; formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D VF_1770 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D VF_0695 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D VF_1929 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D VF_2394 purH; fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D VF_2544 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D VF_A0700 gcvT; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D VF_0337 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D VF_0460 thyA; thymidylate synthetase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D VF_1714 purU; formyltetrahydrofolate hydrolase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D VF_2309 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D VF_2104 ygfA; predicted ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:vfi00860]
D VF_1887 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VF_0767 hemA; glutamyl tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D VF_2135 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D VF_0053 hemB; porphobilinogen synthase (delta-aminolevulinic acid dehydratase) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D VF_0066 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D VF_0065 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D VF_2402 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D VF_A0558 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D VF_0080 hemN; coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D VF_0028 hemG; protoporphyrin oxidase, flavoprotein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D VF_0794 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D VF_0064 hemX; predicted uroporphyrinogen III methylase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D VF_0773 cobA; uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D VF_1531 ferrochelatase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D VF_1750 btuR; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D VF_A0289 cobQ; cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D VF_2129 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D VF_1228 hutZ; HutZ protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:vfi00130]
D VF_2445 ubiC; chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D VF_2444 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D VF_0060 ubiD; 3-octaprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D VF_0266 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D VF_2100 visC; predicted oxidoreductase with FAD/NAD(P)-binding domain K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D VF_1203 ubiG; bifunctional 3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D VF_2101 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D VF_0046 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D VF_0760 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D VF_1672 menF; isochorismate synthase 2 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D VF_1671 menD; bifunctional 2-oxoglutarate decarboxylase/SHCHC synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D VF_1670 yfbB; predicted peptidase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D VF_1667 menC; o-succinylbenzoyl-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D VF_1666 menE; o-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D VF_1669 menB; dihydroxynaphthoic acid synthetase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D VF_A0666 ydiI; conserved protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D VF_0212 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:vfi00900]
D VF_0711 dxs; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D VF_1956 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D VF_2073 ispD; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D VF_0765 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D VF_2072 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D VF_0629 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D VF_0470 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D VF_A0841 3-hydroxy-3-methylglutaryl-coenzyme A reductase K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34]
D VF_0266 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D VF_0403 idi; isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D VF_0712 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D VF_0277 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D VF_1958 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:vfi00907]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VF_0024 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VF_1811 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D VF_0440 tktA; transketolase 1, thiamin-binding K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D VF_A0686 tktB; transketolase 2 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:vfi00523]
D VF_0167 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D VF_0166 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VF_0186 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VF_0168 rfbC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
C 01054 Nonribosomal peptide structures [PATH:vfi01054]
D VF_1547 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D VF_1672 menF; isochorismate synthase 2 K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D VF_0166 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VF_0186 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D VF_1099 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:vfi00332]
D VF_0740 proB; gamma-glutamate kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D VF_0741 proA; gamma-glutamylphosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:vfi00261]
D VF_0321 cysN; sulfate adenylyltransferase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D VF_0320 cysD; sulfate adenylyltransferase, subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D VF_0338 lysC; aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_0537 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_A1125 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VF_2118 thrA; fused aspartokinase I and homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D VF_2266 metL; fused aspartokinase II/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D VF_1645 asd; aspartate-semialdehyde dehydrogenase, NAD(P)-binding K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VF_1698 usg; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VF_1918 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D VF_0471 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:vfi00521]
D VF_0816 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VF_0614 suhB; inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D VF_0167 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D VF_0166 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VF_0186 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VF_0168 rfbC; dTDP-4-deoxyrhamnose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:vfi00525]
D VF_0167 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D VF_0166 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VF_0186 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:vfi00401]
D VF_0554 tyrA; fused chorismate mutase T/prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D VF_A0283 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VF_1014 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VF_1488 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D VF_1033 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D VF_2602 trpE2; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D VF_1032 trpD; glutamine amidotransferase (component II) of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D VF_1741 fabD; malonyl-CoA:(acyl carrier protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D VF_0859 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VF_1740 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:vfi00998]
D VF_1739 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D VF_0847 acyl carrier protein K02078 acpP; acyl carrier protein
D VF_0846 acyl carrier protein K02078 acpP; acyl carrier protein
D VF_1249 phosphoenolpyruvate phosphomutase K01841 pepM; phosphoenolpyruvate phosphomutase [EC:5.4.2.9]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:vfi00999]
D VF_0439 metK; methionine adenosyltransferase 1 K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D VF_2535 aroE; dehydroshikimate reductase, NAD(P)-binding K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites [PATH:vfi00997]
D VF_A0164 iucD; aerobactin siderophore biosynthesis protein IucD K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59]
D VF_A0162 iucB; aerobactin siderophore synthesis protein IucB K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
D VF_A0161 iucA; aerobactin siderophore biosynthesis protein IucA K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D VF_A0163 iucC; aerobactin siderophore biosynthesis protein IucC K03895 iucC; aerobactin synthase [EC:6.3.2.39]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:vfi00362]
D VF_0024 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VF_1811 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_0540 oadB; oxaloacetate decarboxylase beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
C 00627 Aminobenzoate degradation [PATH:vfi00627]
D VF_1486 glutamyl-tRNA(Gln) amidotransferase, subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D VF_1502 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D VF_0266 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:vfi00625]
D VF_1188 yiaY; predicted Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VF_0648 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0645 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0918 adhE; fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:vfi00633]
D VF_A1049 nemA; N-ethylmaleimide reductase, FMN-linked K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D VF_A0118 morphinone reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D VF_0024 fadA; 3-ketoacyl-CoA thiolase (thiolase I) K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VF_1811 fadI; beta-ketoacyl-CoA thiolase, anaerobic, subunit K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:vfi00643]
D VF_1486 glutamyl-tRNA(Gln) amidotransferase, subunit A K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
D VF_0673 ureC; Urea amidohydrolase, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D VF_0674 ureB; urea amidohydrolase, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D VF_0675 ureA; urea amidohydrolase, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:vfi00930]
D VF_0025 fadB; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VF_1810 fadJ; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:vfi00626]
D VF_1188 yiaY; predicted Fe-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VF_0648 glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0645 frmA; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VF_0918 adhE; fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:vfi03020]
D VF_2657 hypothetical protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D VF_2414 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D VF_2412 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D VF_0262 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D VF_0105 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:vfi03010]
D VF_1759 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D VF_1962 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D VF_0242 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D VF_0261 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D VF_0254 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D VF_2312 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D VF_0231 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D VF_0251 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D VF_2221 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D VF_0234 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D VF_0260 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D VF_0230 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D VF_0259 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D VF_0250 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D VF_0489 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D VF_0549 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D VF_0245 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D VF_2311 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D VF_0240 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D VF_0464 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D VF_2250 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D VF_2418 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D VF_0239 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D VF_0235 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D VF_0237 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D VF_0249 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D VF_0252 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D VF_2415 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D VF_2310 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D VF_2416 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D VF_2419 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D VF_2222 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D VF_0246 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D VF_0256 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D VF_0243 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D VF_0263 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D VF_0253 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D VF_0552 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D VF_1218 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D VF_0278 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D VF_0241 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D VF_0238 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D VF_0248 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D VF_0862 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D VF_0279 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D VF_0127 rpmB; 50S ribosomal subunit protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D VF_0244 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D VF_0255 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D VF_2273 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D VF_1744 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D VF_0128 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D VF_0005 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D VF_1217 rpmI; 50S ribosomal subunit protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D VF_0258 rpmJ; 50S ribosomal subunit protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D VF_R0015 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0034 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0031 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_AR0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0028 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0021 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0018 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0012 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0008 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0011 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0033 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_AR0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0014 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0027 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0030 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_AR0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0009 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0003 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0019 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0029 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0013 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0026 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0010 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0032 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0022 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0006 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0016 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0025 5S RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:vfi00970]
D VF_T0004 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0093 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0090 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0095 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0100 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0067 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0018 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0021 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0022 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0024 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0023 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0043 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0073 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0012 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0010 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0007 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0044 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_AT0009 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_AT0001 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0064 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0005 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0026 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0070 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0088 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0068 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VF_T0053 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VF_T0062 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VF_T0028 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_T0032 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_T0035 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_T0039 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_T0037 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_AT0004 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0107 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0069 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0002 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0092 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0104 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0085 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_AT0003 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_AT0008 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0083 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0077 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0059 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0052 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0061 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0081 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0079 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0097 tRNA-His K14226 tRNA-His; tRNA His
D VF_T0099 tRNA-His K14226 tRNA-His; tRNA His
D VF_T0003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VF_T0094 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VF_T0072 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VF_T0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0048 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0006 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0031 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0029 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_AT0005 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VF_T0106 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VF_T0103 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VF_T0091 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VF_T0030 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0041 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0033 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0076 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0078 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0080 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0082 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0015 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VF_T0075 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VF_T0013 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VF_T0008 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VF_T0042 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VF_T0096 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VF_T0098 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VF_T0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0019 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_AT0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0066 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_AT0011 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0063 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0065 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0045 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0084 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_AT0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0087 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0014 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0011 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0009 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0074 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0101 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_AT0007 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VF_T0001 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VF_T0027 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VF_T0054 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0057 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0056 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0055 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0086 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0058 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_AT0006 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0102 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0105 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0089 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0046 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0047 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_1887 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VF_0809 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D VF_0536 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VF_0634 Predicted metal-dependent hydrolase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VF_0949 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D VF_1159 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D VF_0015 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D VF_0016 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D VF_1214 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D VF_0908 serS; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D VF_2508 L-seryl-tRNA selenium transferase family K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D VF_1600 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D VF_1754 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D VF_2544 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D VF_0411 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D VF_0753 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D VF_0467 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D VF_0453 lysU; lysine tRNA synthetase, inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D VF_0839 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D VF_0682 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D VF_0630 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D VF_1235 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D VF_1236 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D VF_1727 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D VF_2286 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:vfi03060]
D VF_0257 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D VF_2422 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D VF_0483 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D VF_1967 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D VF_0875 secD2; protein translocase subunit SecD-like protein K03072 secD; preprotein translocase subunit SecD
D VF_1966 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D VF_0874 secF2; protein translocase subunit SecF-like protein K03074 secF; preprotein translocase subunit SecF
D VF_1968 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D VF_0003 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VF_2193 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D VF_2349 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D VF_0548 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D VF_2599 ffs; 4.5S RNA component of the signal recognition particle (SRP) K01983 ffs; SRP RNA
D VF_2453 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein K03110 ftsY; fused signal recognition particle receptor
D VF_0049 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D VF_0050 tatB; TatABCE protein translocation system subunit K03117 tatB; sec-independent protein translocase protein TatB
D VF_0051 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
D VF_2088 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D VF_0468 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:vfi04122]
D VF_0617 iscS; Sulfur mobilization protein for Fe-S synthesis, cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D VF_1387 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VF_A0101 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VF_0019 tusA; sulfur transfer protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D VF_2582 tusB; sulfur transfer protein complex, TusB subunit K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D VF_0229 tusC; sulfur transfer protein complex, TusC subunit K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D VF_0228 tusD; sulfur transfer protein complex, TusD subunit K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D VF_1501 tusE; sulfur transfer protein TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D VF_1784 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D VF_0943 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D VF_0940 moaA; molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D VF_0942 moaD; molybdopterin synthase, small subunit K03636 moaD; sulfur-carrier protein
D VF_1609 moeB; molybdopterin synthase sulfurylase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D VF_0941 moaC; molybdopterin biosynthesis, protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D VF_A0565 mog; predicted molybdochelatase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D VF_0716 thiI; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D VF_2576 thiS; sulfur carrier protein ThiS K03154 thiS; sulfur carrier protein
D VF_0034 thiF; thiamin (thiazole moiety) biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:vfi03018]
D VF_0456 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D VF_1748 rne; rne K08300 rne; ribonuclease E [EC:3.1.26.12]
D VF_0056 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D VF_2075 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VF_0490 pnp; polynucleotide phosphorylase (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D VF_A0374 ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VF_A0151 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VF_1790 ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VF_2314 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D VF_A0384 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D VF_0070 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VF_A1156 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VF_0058 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VF_1994 dnaK; chaperone Hsp70/DnaK, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D VF_1467 chaperone, DnaK-like protein K04043 dnaK; molecular chaperone DnaK
D VF_0205 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VF_2323 hfq; RNA chaperone Hfq (HF-I) K03666 hfq; host factor-I protein
D VF_2166 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:vfi03030]
D VF_2514 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0016 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_2382 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_1935 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0349 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_1947 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VF_1687 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VF_1734 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VF_0751 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VF_0498 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VF_0412 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VF_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VF_0301 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D VF_2252 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D VF_0353 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VF_B0045 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D VF_A0524 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D VF_1936 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D VF_1948 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D VF_0074 polA; fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VF_1890 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:vfi03410]
D VF_0929 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D VF_2113 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D VF_0422 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D VF_0130 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D VF_A0815 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D VF_1583 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D VF_2114 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D VF_0074 polA; fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VF_0450 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D VF_1890 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:vfi03420]
D VF_A0460 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D VF_0341 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D VF_0936 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D VF_1626 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C
D VF_0068 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VF_0074 polA; fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VF_1890 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:vfi03430]
D VF_0534 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D VF_2325 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D VF_0455 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D VF_0068 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VF_1482 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D VF_0636 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D VF_0713 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D VF_0450 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D VF_0353 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VF_B0045 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D VF_1947 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VF_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VF_1687 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VF_0751 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VF_1734 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VF_2514 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0016 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_2382 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_1935 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0349 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_0412 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VF_0498 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VF_1890 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D VF_2289 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:vfi03440]
D VF_0450 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D VF_0353 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VF_B0045 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D VF_0011 recF; gap repair protein K03629 recF; DNA replication and repair protein RecF
D VF_2085 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D VF_1685 recR; gap repair protein K06187 recR; recombination protein RecR
D VF_0535 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D VF_0074 polA; fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VF_0951 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D VF_0952 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D VF_0950 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D VF_2460 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D VF_1354 DNA-binding protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D VF_0582 recB; exonuclease V (RecBCD complex), beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D VF_0581 recC; exonuclease V (RecBCD complex), gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D VF_0583 recD; exonuclease V (RecBCD complex), alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D VF_1947 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VF_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VF_1687 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VF_0751 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VF_1734 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VF_2514 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0016 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_2382 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_1935 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0349 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_0412 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VF_0498 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VF_2274 priA; Primosome factor n' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D VF_2656 primosomal replication protein N K02686 priB; primosomal replication protein N
D VF_1007 primosomal replication protein N' K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:vfi03250]
D VF_0721 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:vfi02010]
D VF_1402 modA2; molybdate ABC transporter, periplasmic binding protein ModA K05772 tupA; tungstate transport system substrate-binding protein
D VF_1403 modB2; molybdate ABC transporter, permease ModB K05773 tupB; tungstate transport system permease protein
D VF_1404 modC2; molybdate ABC transporter, ATP-binding component ModC K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D VF_A0319 hydroxymethylpyrimidine-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D VF_A0318 tauC; taurine transporter permease subunit K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D VF_A0317 hydroxymethylpyrimidine transport ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D VF_A0290 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D VF_A0291 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D VF_A0292 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D VF_2151 iron(III) ABC transporter, periplasmic binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D VF_2150 iron(III)-transport system permease protein SfuB K02011 afuB; iron(III) transport system permease protein
D VF_2149 iron(III)-transport system ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D VF_0267 thiB; thiamine/thiamine pyrophosphate ABC transporter, thiamine/thiamine pyrophospate-binding protein ThiB/TbpA/SfuA K02064 thiB; thiamine transport system substrate-binding protein
D VF_0268 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein ThiP/SfuB K02063 thiP; thiamine transport system permease protein
D VF_0269 thiQ; thiamine ABC transporter, ATP-binding protein ThiQ/SfuC K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D VF_1319 potD1; polyamine transporter binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D VF_1318 potD2; polyamine transporter binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D VF_1317 potC; polyamine transporter permease protein K11070 potC; spermidine/putrescine transport system permease protein
D VF_1316 potB; polyamine transporter permease protein K11071 potB; spermidine/putrescine transport system permease protein
D VF_1315 potA; polyamine transporter ATPase protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D VF_0785 proX; glycine betaine transporter subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein
D VF_A1050 glycine betaine-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D VF_0786 proW; glycine betaine transporter subunit K02001 proW; glycine betaine/proline transport system permease protein
D VF_0787 proV; glycine betaine transporter subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D VF_A0799 malE; periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D VF_A0798 malF; maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D VF_A0797 malG; maltose ABC transporter, permease protein K10110 malG; maltose/maltodextrin transport system permease protein
D VF_A0800 malK; fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D VF_2046 malK2; maltose/maltodextrin transport ATP-binding protein MalK2 K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D VF_2043 malE2; maltose/maltodextrin-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D VF_2044 malF2; maltose transport system permease protein MalF K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D VF_2045 malG2; maltose transport system permease protein MalG K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D VF_0397 yrbC; predicted ABC-type organic solvent transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D VF_0396 yrbD; predicted ABC-type organic solvent transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D VF_0395 yrbE; predicted toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D VF_0399 yrbB; predicted NTP-binding protein K07122 mlaB; phospholipid transport system transporter-binding protein
D VF_0394 yrbF; predicted toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D VF_1447 rbsB; D-ribose-binding protein, RbsB K10439 rbsB; ribose transport system substrate-binding protein
D VF_1446 rbsC; ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D VF_1445 rbsA; ribose transport ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D VF_1444 rbsD; high affinity ribose transport protein RbsD K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D VF_1986 pstS; phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VF_A0555 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VF_1610 pstS2; phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VF_1985 pstC; phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D VF_1611 pstC2; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D VF_1984 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D VF_1612 pstA2; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D VF_1983 pstB; phosphate transporter ATP-binding subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D VF_1613 pstB2; phosphate transport ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D VF_1532 general L-amino acid-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D VF_1533 aapQ; predicted amino-acid transporter permease K09970 aapQ; general L-amino acid transport system permease protein
D VF_1534 aapM; predicted amino-acid transporter permease K09971 aapM; general L-amino acid transport system permease protein
D VF_1535 aapP; predicted amino-acid transporter ATPase K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D VF_0008 fliY; cystine-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D VF_0007 yecS; cystine transport system permease protein K16962 yxeN; putative S-methylcysteine transport system permease protein
D VF_0006 yecC; cystine transport ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D VF_1587 argT; lysine/arginine/ornithine transporter subunit K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D VF_1585 hisM; histidine/lysine/arginine/ornithine transporter subunit K10023 aotM; arginine/ornithine transport system permease protein
D VF_1586 hisQ; histidine/lysine/arginine/ornithine transporter subunit K10024 aotQ; arginine/ornithine transport system permease protein
D VF_1588 hisP; histidine/lysine/arginine/ornithine transporter subunit K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D VF_0684 metQ; DL-methionine transporter subunit K02073 metQ; D-methionine transport system substrate-binding protein
D VF_0685 metI; DL-methionine transporter subunit K02072 metI; D-methionine transport system permease protein
D VF_0686 metN; DL-methionine transporter subunit K02071 metN; D-methionine transport system ATP-binding protein
D VF_1597 oppA; oligopeptide-binding protein OppA K15580 oppA; oligopeptide transport system substrate-binding protein
D VF_1596 oppB; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D VF_1595 oppC; oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D VF_1594 oppD; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D VF_1593 oppF; oligopeptide transporter ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D VF_A0309 sapA; peptide transport protein SapA K19226 sapA; cationic peptide transport system substrate-binding protein
D VF_A0308 sapB; peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D VF_A0307 sapC; peptide transport system permease protein SapC K19228 sapC; cationic peptide transport system permease protein
D VF_A0306 sapD; peptide transport system ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D VF_A0305 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D VF_0690 oligopeptide-binding protein OppA K13893 yejA; microcin C transport system substrate-binding protein
D VF_0688 yejB; predicted oligopeptide transporter subunit K13894 yejB; microcin C transport system permease protein
D VF_0689 yejE; predicted oligopeptide transporter subunit K13895 yejE; microcin C transport system permease protein
D VF_A0159 fhuD; iron-hydroxamate transporter subunit K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D VF_A0782 ferrichrome-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D VF_A0160 fhuB; fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components K23228 fhuB; ferric hydroxamate transport system permease protein
D VF_A0781 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D VF_A0158 fhuC; iron-hydroxamate transporter subunit K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D VF_A0783 ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D VF_0830 znuA; zinc transporter subunit: periplasmic-binding component of ABC superfamily K09815 znuA; zinc transport system substrate-binding protein
D VF_2366 znuA2; high-affinity zinc uptake system protein ZnuA2 K09815 znuA; zinc transport system substrate-binding protein
D VF_0828 znuB; zinc transporter subunit: membrane component of ABC superfamily K09816 znuB; zinc transport system permease protein
D VF_2368 znuB2; high-affinity zinc uptake system membrane protein ZnuB2 K09816 znuB; zinc transport system permease protein
D VF_0829 znuC; zinc transporter subunit: ATP-binding component of ABC superfamily K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D VF_2367 znuC2; high-affinity zinc uptake system ATP-binding protein ZnuC2 K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D VF_1564 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D VF_A0462 lolC; outer membrane-specific lipoprotein transporter subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D VF_A0464 lolE; outer membrane-specific lipoprotein transporter subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D VF_A0463 lolD; outer membrane-specific lipoprotein transporter subunit K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D VF_1821 ccmD; heme exporter protein D K02196 ccmD; heme exporter protein D
D VF_1822 ccmC; heme exporter subunit C K02195 ccmC; heme exporter protein C
D VF_1823 ccmB; heme exporter subunit B K02194 ccmB; heme exporter protein B
D VF_1824 ccmA; heme exporter subunit A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D VF_0414 yjgP; conserved inner membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D VF_0415 yjgQ; conserved inner membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D VF_0388 lptB; predicted transporter subunit: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D VF_2451 ftsX; predicted transporter subunit: membrane component of ABC superfamily K09811 ftsX; cell division transport system permease protein
D VF_2452 ftsE; predicted transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D VF_A0424 msbA; fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D VF_0974 mdlA; fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D VF_0975 mdlB; fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D VF_A0509 multidrug resistance ABC transporter ATP-binding and permease protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D VF_A1165 rtxB; ATP-binding protein, putative RTX transport secretion component RtxB K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D VF_0900 cydC; fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D VF_0901 cydD; fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS) [PATH:vfi02060]
D VF_1895 ptsI; PEP-protein phosphotransferase of PTS system (enzyme I) K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D VF_1894 ptsH; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) K02784 ptsH; phosphocarrier protein HPr
D VF_A0786 PTS system, glucose-specific II BC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D VF_1897 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VF_1732 ptsG; fused glucose-specific PTS enzymes: IIB component/IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D VF_0808 nagE; fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB components K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VF_A0438 nagE2; fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB components K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VF_1719 malX; fused maltose and glucose-specific PTS enzymes: IIB component/IIC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VF_1115 murP; fused predicted PTS enzymes: IIB component/IIC component K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D VF_A0060 cmtB; predicted mannitol-specific enzyme IIA component of PTS K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D VF_A0061 cmtA; predicted fused mannitol-specific PTS enzymes: IIB component/IIC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D VF_0607 PTS system, cellobiose-utilization IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D VF_0604 PTS system, cellobiose-utilization IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D VF_0603 PTS system, cellobiose-utilization IIC component K02761 celB; cellobiose PTS system EIIC component
D VF_A1000 PTS system, N-acetylgalactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D VF_A1003 agaV; N-acetylgalactosamine-specific enzyme IIB component of PTS K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D VF_A1002 agaC; PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D VF_A1001 agaD; N-acetylgalactosamine-specific enzyme IID component of PTS K02747 agaE; N-acetylgalactosamine PTS system EIID component
D VF_A0130 PTS system, 3-keto-L-gulonate specific IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D VF_A0128 PTS system, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D VF_A0129 ulaA; L-ascorbate-specific enzyme IIC component of PTS K03475 ulaA; ascorbate PTS system EIIC component
D VF_A0942 fruB; fused fructose-specific PTS enzymes: IIA component/HPr component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D VF_A0940 fruA; fused fructose-specific PTS enzymes: IIBcomponent/IIC components K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D VF_A0712 hypothetical protein K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D VF_A0369 PTS system, fructose-like-1 IIA component K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D VF_A0941 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D VF_0457 ptsP; fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D VF_0383 phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
D VF_A0711 PTS system, IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D VF_0385 ptsN; sugar-specific enzyme IIA component of PTS K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:vfi03070]
D VF_2233 tolC; transport channel K12340 tolC; outer membrane protein
D VF_2474 gspD; general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D VF_2475 gspC; general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D VF_2472 gspF; general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D VF_2471 gspG; general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D VF_2470 gspH; general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D VF_2469 gspI; general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D VF_2468 gspJ; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D VF_2467 gspK; general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D VF_2466 gspL; general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D VF_2465 gspM; cholera toxin secretion protein EpsM K02462 gspM; general secretion pathway protein M
D VF_2473 gspE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D VF_1967 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D VF_0875 secD2; protein translocase subunit SecD-like protein K03072 secD; preprotein translocase subunit SecD
D VF_1966 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D VF_0874 secF2; protein translocase subunit SecF-like protein K03074 secF; preprotein translocase subunit SecF
D VF_2422 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D VF_0483 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D VF_0257 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D VF_1968 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D VF_0003 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VF_2193 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D VF_2453 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein K03110 ftsY; fused signal recognition particle receptor
D VF_2349 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D VF_0548 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D VF_0049 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D VF_0050 tatB; TatABCE protein translocation system subunit K03117 tatB; sec-independent protein translocase protein TatB
D VF_0051 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
D VF_B0038 attachment mediating protein VirB2-like protein K03197 virB2; type IV secretion system protein VirB2
D VF_B0056 type IV secretion (pTiA6 VirB3) K03198 virB3; type IV secretion system protein VirB3
D VF_B0054 attachment mediating protein VirB5-like protein K03200 virB5; type IV secretion system protein VirB5
D VF_B0041 channel protein VirB9 K03204 virB9; type IV secretion system protein VirB9
D VF_B0055 channel protein VirB6 K03201 virB6; type IV secretion system protein VirB6
D VF_B0040 channel protein VirB8 K03203 virB8; type IV secretion system protein VirB8
D VF_B0042 channel protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D VF_B0039 VirB4 ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D VF_B0043 VirB11 ATPase K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D VF_B0044 protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D VF_A0953 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VF_1229 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VF_A0954 hemolysin co-regulated protein K11903 hcp; type VI secretion system secreted protein Hcp
D VF_0996 probable lipoprotein K11906 vasD; type VI secretion system protein VasD
D VF_0993 icmF; secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D VF_0994 OmpA family protein K11892 impK; type VI secretion system protein ImpK
D VF_0999 ATP-dependent protease subunit K11907 vasG; type VI secretion system protein VasG
D VF_0991 protein phosphatase 2C K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:vfi02020]
D VF_1987 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D VF_1988 phoB; DNA-binding response regulator in two-component regulatory system with PhoR K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D VF_1986 pstS; phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VF_A0555 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VF_1610 pstS2; phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VF_0525 phoQ1; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0524 phoQ2; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0526 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D VF_0109 yedA; predicted inner membrane protein K07790 pagO; putative membrane protein PagO
D VF_0115 envZ; EnvZ osmolarity sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D VF_0114 ompR; OmpR DNA-binding osmolarity response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D VF_2344 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D VF_2343 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D VF_2225 degP; serine endoprotease DegP (protease Do), periplasmic K04771 degP; serine protease Do [EC:3.4.21.107]
D VF_A0178 cusS; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D VF_A0179 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D VF_A0444 cusB; copper/silver efflux system, membrane fusion protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D VF_A0445 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D VF_2079 flaF; flagellin FlaF K02406 fliC; flagellin
D VF_1862 flaE; Flagellin FlaE K02406 fliC; flagellin
D VF_1863 flaD; Flagellin FlaD K02406 fliC; flagellin
D VF_1864 flaC; Flagellin FlaC K02406 fliC; flagellin
D VF_1865 flaB; Flagellin FlaB K02406 fliC; flagellin
D VF_1866 flaA; Flagellin FlaA K02406 fliC; flagellin
D VF_1834 fliA; RNA polymerase, sigma-28 (sigma-F, FliA) factor K02405 fliA; RNA polymerase sigma factor FliA
D VF_0714 motA1; flagellar motor protein MotA1 K02556 motA; chemotaxis protein MotA
D VF_A0186 motA2; flagellar motor protein MotA2 K02556 motA; chemotaxis protein MotA
D VF_1619 torS; hybrid sensory histidine kinase in two-component regulatory system with TorR K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D VF_1570 torR; DNA-binding response regulator in two-component regulatory system with TorS K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D VF_A0298 torC; trimethylamine N-oxide reductase, cytochrome c-type subunit K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D VF_A0299 torA; trimethylamine N-oxide (TMAO) reductase I, catalytic subunit K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VF_1571 torD; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I K03533 torD; TorA specific chaperone
D VF_2122 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D VF_2120 arcA; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D VF_0009 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D VF_1088 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D VF_2064 dcuB; C4-dicarboxylate antiporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D VF_1558 maeA; malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D VF_1908 narQ; sensory histidine kinase in two-component regulatory system with NarP (NarL) K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D VF_1909 narP; DNA-binding response regulator in two-component regulatory system with NarQ K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D VF_2334 frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VF_2335 frdB; fumarate reductase (anaerobic), Fe-S subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VF_2336 frdC; fumarate reductase (anaerobic), membrane anchor subunit K00246 frdC; succinate dehydrogenase subunit C
D VF_2337 frdD; fumarate reductase (anaerobic), membrane anchor subunit K00247 frdD; succinate dehydrogenase subunit D
D VF_A0039 uhpC; membrane protein regulates uhpT expression K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D VF_A0040 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D VF_A0041 uhpA; DNA-binding response regulator in two-component regulatory system wtih UhpB K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D VF_A0042 uhpT; hexose phosphate transporter K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D VF_2082 gacS; hybrid sensory histidine kinase, in two-component regulatory system with GacA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D VF_1627 gacA; DNA-binding response regulator in two-component regulatory system with GacS K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D VF_0538 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator
D VF_0510 fimbrial protein precursor K02651 flp; pilus assembly protein Flp/PilA
D VF_A0218 flp2; fimbrial protein precursor Flp1 K02651 flp; pilus assembly protein Flp/PilA
D VF_0512 flp1; Flp pilus assembly protein CpaB family K02279 cpaB; pilus assembly protein CpaB
D VF_A0219 tungstate-binding protein precursor K02279 cpaB; pilus assembly protein CpaB
D VF_0513 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VF_A0220 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VF_0515 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VF_A0222 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VF_0516 tadA1; putative type IV secretion NTPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VF_A0223 tadA2; putative type IV secretion NTPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VF_A0224 tadB2; TadB-like protein involved in pilus formation and/or protein secretion K12510 tadB; tight adherence protein B
D VF_0517 tadB1; TadB-like protein involved in pilus formation and/or protein secretion K12510 tadB; tight adherence protein B
D VF_0518 tadC1; bipartite nuclear localization signal containing protein K12511 tadC; tight adherence protein C
D VF_A0225 tadC2; bipartite nuclear localization signal containing protein K12511 tadC; tight adherence protein C
D VF_1964 glnD; uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D VF_1942 glnB; regulatory protein P-II for glutamine synthetase K04751 glnB; nitrogen regulatory protein P-II 1
D VF_0096 ntrB; nitrogen regulatory sensory histidine kinase in two-component regulatory system with NtrC K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D VF_0095 ntrC; fused DNA-binding response regulator in two-component regulatory system with NtrB: nitrogen regulatory response regulator/sigma54 interaction protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D VF_0098 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VF_0387 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D VF_2185 pilA; pilin subunit PilA K02650 pilA; type IV pilus assembly protein PilA
D VF_1878 cheR; chemotaxis regulator, protein-glutamate methyltransferase, CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D VF_2236 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0389 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0448 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0447 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0528 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0677 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0325 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_0987 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1091 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1133 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_0777 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1618 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1369 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0169 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0170 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A1069 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A1072 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A1084 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0107 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1778 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1503 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1789 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_2042 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_2161 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0092 methyl-accepting chemotaxis protein, putative aerotaxis receptor K03776 aer; aerotaxis receptor
D VF_A1071 methyl-accepting chemotaxis protein, putative aerotaxis receptor K03776 aer; aerotaxis receptor
D VF_1826 cheW; chemotaxis coupling protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D VF_1828 C-terminal CheW domain, putative chemotaxis coupling protein K03408 cheW; purine-binding chemotaxis protein CheW
D VF_1831 cheA; chemotactic sensory histidine kinase CheA, in two-component regulatory system with CheB and CheY K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VF_1833 cheY; chemotaxis regulator CheY, transmits signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VF_1054 ScrF protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VF_1830 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D VF_A0698 cheV3; CheW/CheY hybrid protein CheV3 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_1879 cheV1; CheW/CheY hybrid protein CheV1 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_A0802 cheV2; CheW/CheY hybrid protein CheV2 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_0707 luxP; periplasmic AI-2 binding protein LuxP K10910 luxP; autoinducer 2-binding periplasmic protein LuxP
D VF_0708 luxQ; membrane-bound sensor histidine kinase LuxQ K10909 luxQ; two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-]
D VF_1036 ainR; putative autoinducer regulatory protein AinR K15850 luxN; two-component system, autoinducer 1 sensor kinase/phosphatase LuxN [EC:2.7.13.3 3.1.3.-]
D VF_0938 luxU; autoinducer phosphorelay protein LuxU K10911 luxU; two-component system, phosphorelay protein LuxU
D VF_A1026 sypG; sigma-54 dependent transcriptional regulator K10912 luxO; two-component system, repressor protein LuxO
D VF_0937 luxO; autoinducer repressor protein LuxO K10912 luxO; two-component system, repressor protein LuxO
D VF_2597 qrr1; Qrr1 quorum regulatory RNA K15851 qrr; quorum regulatory RNA Qrr
D VF_2177 litR; quorum sensing transcriptional regulator LitR (HapR) K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VF_A0923 luxC; acyl-CoA reductase LuxC K03400 luxC; long-chain-fatty-acyl-CoA reductase [EC:1.2.1.50]
D VF_A0922 luxD; acyl transferase LuxD K15853 luxD; acyl transferase [EC:2.3.1.-]
D VF_A0921 luxA; luciferase alpha chain LuxA K00494 luxA; alkanal monooxygenase alpha chain [EC:1.14.14.3]
D VF_A0920 luxB; luciferase beta chain LuxB K15854 luxB; alkanal monooxygenase beta chain [EC:1.14.14.3]
D VF_A0919 luxE; long-chain-fatty-acid ligase LuxE K06046 luxE; long-chain-fatty-acid---luciferin-component ligase [EC:6.2.1.19]
D VF_A0102 two component sensor histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D VF_A0103 two component response regulator K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D VF_1856 flrA; sigma-54-dependent transcriptional activator FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VF_1855 flrB; sensory histidine kinase FlrB K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D VF_1854 flrC; two-component response regulator FlrC K10943 flrC; two-component system, response regulator FlrC
D VF_2280 crp; DNA-binding transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VF_0423 yneH; predicted glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D VF_2220 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D VF_2218 cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D VF_2217 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D VF_1299 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D VF_1300 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D VF_1301 ccoQ; Cbb3-type cytochrome oxidase component FixQ family K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D VF_1302 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D VF_0953 cydA; cytochrome d terminal oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D VF_0954 cydB; cytochrome d terminal oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D VF_0955 ybgT; cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D VF_2233 tolC; transport channel K12340 tolC; outer membrane protein
D VF_0162 gfcE; predicted exopolysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D VF_0164 etp; phosphotyrosine-protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D VF_0165 wzc; protein-tyrosine kinase, chain length regulator in capsular polysaccharide biosynthesis K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D VF_1881 flgM; flagellar anti-sigma-28 factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D VF_2220 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:vfi02024]
D VF_0545 luxS; S-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D VF_0707 luxP; periplasmic AI-2 binding protein LuxP K10910 luxP; autoinducer 2-binding periplasmic protein LuxP
D VF_0708 luxQ; membrane-bound sensor histidine kinase LuxQ K10909 luxQ; two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-]
D VF_1037 ainS; C8-HSL autoinducer synthesis protein AinS K13062 ainS; acyl homoserine lactone synthase [EC:2.3.1.184]
D VF_1036 ainR; putative autoinducer regulatory protein AinR K15850 luxN; two-component system, autoinducer 1 sensor kinase/phosphatase LuxN [EC:2.7.13.3 3.1.3.-]
D VF_0938 luxU; autoinducer phosphorelay protein LuxU K10911 luxU; two-component system, phosphorelay protein LuxU
D VF_A1026 sypG; sigma-54 dependent transcriptional regulator K10912 luxO; two-component system, repressor protein LuxO
D VF_0937 luxO; autoinducer repressor protein LuxO K10912 luxO; two-component system, repressor protein LuxO
D VF_2597 qrr1; Qrr1 quorum regulatory RNA K15851 qrr; quorum regulatory RNA Qrr
D VF_2323 hfq; RNA chaperone Hfq (HF-I) K03666 hfq; host factor-I protein
D VF_2177 litR; quorum sensing transcriptional regulator LitR (HapR) K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VF_A0924 luxI; 3-oxo-C6-HSL autoinducer synthesis protein LuxI K22954 luxI; acyl homoserine lactone synthase [EC:2.3.1.184]
D VF_A0925 luxR; autoinducer-binding transcriptional activator protein LuxR K15852 luxR; LuxR family transcriptional regulator, transcriptional activator of the bioluminescence operon
D VF_A0921 luxA; luciferase alpha chain LuxA K00494 luxA; alkanal monooxygenase alpha chain [EC:1.14.14.3]
D VF_A0920 luxB; luciferase beta chain LuxB K15854 luxB; alkanal monooxygenase beta chain [EC:1.14.14.3]
D VF_A0923 luxC; acyl-CoA reductase LuxC K03400 luxC; long-chain-fatty-acyl-CoA reductase [EC:1.2.1.50]
D VF_A0922 luxD; acyl transferase LuxD K15853 luxD; acyl transferase [EC:2.3.1.-]
D VF_A0919 luxE; long-chain-fatty-acid ligase LuxE K06046 luxE; long-chain-fatty-acid---luciferin-component ligase [EC:6.2.1.19]
D VF_A0918 luxG; NAD(P)H-dependent FMN reductase LuxG K20256 luxG; flavin reductase [EC:1.-.-.-]
D VF_1033 trpE; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D VF_2602 trpE2; component I of anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D VF_1032 trpD; glutamine amidotransferase (component II) of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D VF_0553 aroF; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VF_1241 aroH; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VF_A0394 aroG; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VF_1064 gadA; glutamate decarboxylase A, PLP-dependent K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VF_A1087 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D VF_A1090 ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D VF_A1089 ABC transporter permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D VF_A1091 afuC; CP4-6 prophage; predicted ferric transporter subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D VF_0533 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_1708 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2256 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2264 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2280 crp; DNA-binding transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VF_0306 zur; DNA-binding transcriptional repressor, Zn(II)-binding K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D VF_1189 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D VF_0700 ribD; fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D VF_1597 oppA; oligopeptide-binding protein OppA K15580 oppA; oligopeptide transport system substrate-binding protein
D VF_1596 oppB; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D VF_1595 oppC; oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D VF_1594 oppD; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D VF_1593 oppF; oligopeptide transporter ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D VF_2139 chitooligosaccharide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VF_2518 dppA; dipeptide-binding protein DppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VF_0681 oligopeptide-binding protein OppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VF_2517 dppB; dipeptide transport system permease protein DppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VF_0680 oligopeptide transport system permease protein OppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VF_2140 chitooligosaccharide transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VF_2141 chitooligosaccharide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VF_2516 dppC; dipeptide transport system permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VF_0679 oligopeptide transport system permease protein OppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VF_2142 chitooligosaccharide transport ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VF_2519 dppD; dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VF_A0200 chitooligosaccharide transport ATP-binding protein oppF K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VF_0691 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VF_2143 chitooligosaccharide transport ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VF_0677 putative dipeptide ABC transporter K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VF_A0199 chitooligosaccharide transport ATP-binding protein oppD K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VF_0692 oligopeptide transport ATP-binding protein OppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VF_0003 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VF_2422 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D VF_0483 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D VF_0257 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D VF_1968 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D VF_2193 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D VF_2453 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein K03110 ftsY; fused signal recognition particle receptor
D VF_2349 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D VF_0548 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:vfi02030]
D VF_2236 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0389 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0448 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0447 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0528 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0677 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0325 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_0987 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1091 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1133 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_0777 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1618 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1369 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0169 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0170 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A1069 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A1072 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A1084 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0107 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1778 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1503 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1789 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_2042 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_2161 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0092 methyl-accepting chemotaxis protein, putative aerotaxis receptor K03776 aer; aerotaxis receptor
D VF_A1071 methyl-accepting chemotaxis protein, putative aerotaxis receptor K03776 aer; aerotaxis receptor
D VF_A0799 malE; periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D VF_1447 rbsB; D-ribose-binding protein, RbsB K10439 rbsB; ribose transport system substrate-binding protein
D VF_1831 cheA; chemotactic sensory histidine kinase CheA, in two-component regulatory system with CheB and CheY K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VF_1826 cheW; chemotaxis coupling protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D VF_1828 C-terminal CheW domain, putative chemotaxis coupling protein K03408 cheW; purine-binding chemotaxis protein CheW
D VF_1833 cheY; chemotaxis regulator CheY, transmits signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VF_1054 ScrF protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VF_1832 cheZ; chemotaxis regulator CheZ, protein phosphatase for CheY K03414 cheZ; chemotaxis protein CheZ
D VF_0305 cheX; chemotaxis CheY-phosphatase CheX K03409 cheX; chemotaxis protein CheX
D VF_1830 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D VF_A0698 cheV3; CheW/CheY hybrid protein CheV3 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_1879 cheV1; CheW/CheY hybrid protein CheV1 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_A0802 cheV2; CheW/CheY hybrid protein CheV2 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_1878 cheR; chemotaxis regulator, protein-glutamate methyltransferase, CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D VF_1851 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D VF_A0185 hypothetical protein K02410 fliG; flagellar motor switch protein FliG
D VF_1845 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D VF_1844 fliN; flagellar motor switch component FliN K02417 fliN; flagellar motor switch protein FliN
D VF_0714 motA1; flagellar motor protein MotA1 K02556 motA; chemotaxis protein MotA
D VF_A0186 motA2; flagellar motor protein MotA2 K02556 motA; chemotaxis protein MotA
D VF_0715 motB1; flagellar motor protein MotB1 K02557 motB; chemotaxis protein MotB
D VF_A0187 motB2; flagellar motor protein MotB2 K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:vfi02040]
D VF_1853 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D VF_1852 fliF; flagellar M ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D VF_1851 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D VF_A0185 hypothetical protein K02410 fliG; flagellar motor switch protein FliG
D VF_1850 fliH; flagellar assembly protein FliH, negative regulator of FliI K02411 fliH; flagellar assembly protein FliH
D VF_1849 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D VF_1848 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D VF_1847 fliK; flagellar hook length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D VF_2446 fliL2; flagellar basal body-associated protein FliL2 K02415 fliL; flagellar protein FliL
D VF_1846 fliL1; flagellar basal body-associated protein FliL1 K02415 fliL; flagellar protein FliL
D VF_1845 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D VF_1844 fliN; flagellar motor switch component FliN K02417 fliN; flagellar motor switch protein FliN
D VF_1843 fliO; flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D VF_1842 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D VF_1841 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D VF_1840 fliR; flagellar export pore protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D VF_1837 flhA; flagellar export pore protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D VF_1839 flhB; flagellar export pore protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D VF_1880 flgA; flagellar P-ring chaperone FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D VF_1877 flgB; flagellar proximal rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D VF_1876 flgC; flagellar proximal rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D VF_1875 flgD; flagellar hook capping protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D VF_1874 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D VF_1873 flgF; flagellar proximal rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D VF_1872 flgG; flagellar distal rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D VF_1871 flgH; flagellar basal body L ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D VF_1870 flgI; flagellar basal body P ring protein flgI K02394 flgI; flagellar P-ring protein FlgI
D VF_1869 flgJ; flagellum-specific peptidoglycan hydrolase/muramidase, FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D VF_1868 flgK; flagellar hook-associated protein 1, FlgK K02396 flgK; flagellar hook-associated protein 1
D VF_1867 flgL; flagellar hook-associate protein 3, FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D VF_1884 conserved hypothetical protein K24344 flgO; flagellar H-ring protein FlgO
D VF_1883 conserved hypothetical protein K09860 flgP; outer membrane protein FlgP
D VF_1885 conserved hypothetical protein K24343 flgT; flagellar H-ring protein FlgT
D VF_2317 motX; flagellar motor protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D VF_0926 motY; flagellar motor protein MotY K21218 motY; sodium-type flagellar protein MotY
D VF_2079 flaF; flagellin FlaF K02406 fliC; flagellin
D VF_1862 flaE; Flagellin FlaE K02406 fliC; flagellin
D VF_1863 flaD; Flagellin FlaD K02406 fliC; flagellin
D VF_1864 flaC; Flagellin FlaC K02406 fliC; flagellin
D VF_1865 flaB; Flagellin FlaB K02406 fliC; flagellin
D VF_1866 flaA; Flagellin FlaA K02406 fliC; flagellin
D VF_1860 fliD; flagellar hook-associated protein 2, FliD K02407 fliD; flagellar hook-associated protein 2
D VF_1858 fliS; flagellin chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D VF_0714 motA1; flagellar motor protein MotA1 K02556 motA; chemotaxis protein MotA
D VF_A0186 motA2; flagellar motor protein MotA2 K02556 motA; chemotaxis protein MotA
D VF_0715 motB1; flagellar motor protein MotB1 K02557 motB; chemotaxis protein MotB
D VF_A0187 motB2; flagellar motor protein MotB2 K02557 motB; chemotaxis protein MotB
D VF_1881 flgM; flagellar anti-sigma-28 factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D VF_1882 flgN; chaperone FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D VF_2254 rpoD; RNA polymerase, sigma-70 (sigma-D) factor K03086 rpoD; RNA polymerase primary sigma factor
D VF_1856 flrA; sigma-54-dependent transcriptional activator FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VF_0387 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D VF_1854 flrC; two-component response regulator FlrC K10943 flrC; two-component system, response regulator FlrC
D VF_1834 fliA; RNA polymerase, sigma-28 (sigma-F, FliA) factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D VF_2075 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D VF_0337 metH; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection [PATH:vfi05110]
D VF_A0577 ace; enterotoxin K10952 ace; accessory cholera enterotoxin
D VF_A0576 zot; zona occludens toxin K10954 zot; zona occludens toxin
D VF_A0875 tcpA; toxin coregulated pilin subunit precursor TcpA K10930 tcpA; toxin coregulated pilin
D VF_A0874 tcpB; toxin coregulated pilus biosynthesis protein TcpB K10931 tcpB; toxin coregulated pilus biosynthesis protein B
D VF_A0872 tcpC; toxin coregulated pilus outer membrane protein TcpC K10932 tcpC; toxin coregulated pilus biosynthesis outer membrane protein C
D VF_A0870 tcpD; toxin coregulated pilus biosynthesis protein TcpD K10933 tcpD; toxin coregulated pilus biosynthesis protein D
D VF_A0867 tcpE; toxin coregulated pilus biosynthesis protein TcpE K10934 tcpE; toxin coregulated pilus biosynthesis protein E
D VF_A0143 gbpA; GlcNac-binding protein A K21712 gbpA; N-acetylglucosamine-binding protein A
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:vfi01501]
D VF_0475 ompU; Outer membrane protein U porin OmpU K08720 ompU; outer membrane protein OmpU
D VF_0720 ampG; muropeptide transporter AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D VF_A0493 nagZ; beta N-acetyl-glucosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D VF_1597 oppA; oligopeptide-binding protein OppA K15580 oppA; oligopeptide transport system substrate-binding protein
D VF_1596 oppB; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D VF_1595 oppC; oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D VF_1594 oppD; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D VF_1593 oppF; oligopeptide transporter ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D VF_1099 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D VF_2522 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VF_A1152 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_2523 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_1582 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_2524 acriflavin resistance plasma membrane protein K18138 acrB; multidrug efflux pump
D VF_A0907 acriflavin resistance plasma membrane protein K18138 acrB; multidrug efflux pump
D VF_A1149 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D VF_2233 tolC; transport channel K12340 tolC; outer membrane protein
D VF_2298 mrcA; fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D VF_0748 mrdA; transpeptidase (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D VF_1481 penicillin binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D VF_2207 ftsI; transpeptidase (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:vfi01502]
D VF_A0570 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D VF_0302 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D VF_2205 murF; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D VF_0856 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D VF_2204 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D VF_2201 murG; N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:vfi01503]
D VF_0525 phoQ1; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0524 phoQ2; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0526 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D VF_A0210 eptA; predicted metal dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D VF_A0309 sapA; peptide transport protein SapA K19226 sapA; cationic peptide transport system substrate-binding protein
D VF_A0308 sapB; peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D VF_A0307 sapC; peptide transport system permease protein SapC K19228 sapC; cationic peptide transport system permease protein
D VF_A0306 sapD; peptide transport system ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D VF_A0305 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D VF_2344 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D VF_2343 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D VF_2326 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D VF_2225 degP; serine endoprotease DegP (protease Do), periplasmic K04771 degP; serine protease Do [EC:3.4.21.107]
D VF_2553 dsbA; periplasmic protein disulfide isomerase I K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D VF_0646 periplasmic protein disulfide isomerase, DsbA-like protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D VF_0721 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D VF_A1152 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_2523 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_1582 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_2524 acriflavin resistance plasma membrane protein K18138 acrB; multidrug efflux pump
D VF_A0907 acriflavin resistance plasma membrane protein K18138 acrB; multidrug efflux pump
D VF_A1149 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D VF_2233 tolC; transport channel K12340 tolC; outer membrane protein
D VF_1950 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:vfi01000]
C 01001 Protein kinases [BR:vfi01001]
D VF_A1077 RIO1 protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D VF_1470 hipA; HipA serine kinase, regulator with HipB, putative TA-system K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D VF_2496 serine/threonine protein kinase K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1]
D VF_0165 wzc; protein-tyrosine kinase, chain length regulator in capsular polysaccharide biosynthesis K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D VF_0349 chain length regulator, exopolysaccharide biosynthesis protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D VF_1987 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D VF_0525 phoQ1; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0524 phoQ2; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0115 envZ; EnvZ osmolarity sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D VF_2344 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D VF_A0178 cusS; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D VF_1619 torS; hybrid sensory histidine kinase in two-component regulatory system with TorR K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D VF_2122 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D VF_1908 narQ; sensory histidine kinase in two-component regulatory system with NarP (NarL) K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D VF_A0040 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D VF_2082 gacS; hybrid sensory histidine kinase, in two-component regulatory system with GacA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D VF_1149 yehU; predicted sensory kinase in two-component system with YehT K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D VF_0096 ntrB; nitrogen regulatory sensory histidine kinase in two-component regulatory system with NtrC K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D VF_1400 sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D VF_1831 cheA; chemotactic sensory histidine kinase CheA, in two-component regulatory system with CheB and CheY K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VF_0708 luxQ; membrane-bound sensor histidine kinase LuxQ K10909 luxQ; two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-]
D VF_1036 ainR; putative autoinducer regulatory protein AinR K15850 luxN; two-component system, autoinducer 1 sensor kinase/phosphatase LuxN [EC:2.7.13.3 3.1.3.-]
D VF_A0102 two component sensor histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D VF_1855 flrB; sensory histidine kinase FlrB K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D VF_2138 chiS; chitin sensor histidine kinase ChiS K19694 chiS; two-component system, sensor histidine kinase ChiS
C 01009 Protein phosphatases and associated proteins [BR:vfi01009]
D VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VF_0792 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D VF_0509 serB; 3-phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:vfi01002]
D VF_0468 lspA; prolipoprotein signal peptidase (signal peptidase II) K03101 lspA; signal peptidase II [EC:3.4.23.36]
D VF_2188 pilD; type 4 prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D VF_0511 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VF_A1179 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VF_1370 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D VF_0638 guaA; GMP synthetase (glutamine aminotransferase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D VF_1411 nlpC; lipoprotein NlpC K13695 nlpC; probable lipoprotein NlpC
D VF_1691 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D VF_2124 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D VF_2372 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D VF_0804 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D VF_0717 yajL; conserved protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D VF_A0241 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D VF_1157 ycbB; predicted carboxypeptidase K21470 ycbB; L,D-transpeptidase YcbB
D VF_A0131 CAAX amino terminal protease family K07052 K07052; CAAX protease family protein
D VF_1282 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D VF_2487 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D VF_1239 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D VF_0029 pqqL; zinc protease, insulinase family K07263 pqqL; zinc protease [EC:3.4.24.-]
D VF_0542 peptidase family M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D VF_0413 pepA; aminopeptidase A, a cyteinylglycinase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D VF_0624 pepB; aminopeptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D VF_A0930 carboxypeptidase G2 precursor K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D VF_1914 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D VF_1060 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D VF_A0004 pepT3; Peptidase T-like protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D VF_A0253 pepT; Peptidase T, PepT K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D VF_0736 pepD; aminoacyl-histidine dipeptidase (peptidase D) K01270 pepD; dipeptidase D [EC:3.4.13.-]
D VF_0831 yebA; predicted peptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D VF_1963 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D VF_0038 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D VF_1457 thermostable carboxypeptidase 1 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D VF_1509 iadA; isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D VF_0479 hflB; ATP-dependent zinc-metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D VF_1152 htpX; predicted endopeptidase K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D VF_1922 yfgC; predicted peptidase K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D VF_1955 rseP; membrane-associated zinc protease (RseP, YaeL) K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D VF_2225 degP; serine endoprotease DegP (protease Do), periplasmic K04771 degP; serine protease Do [EC:3.4.21.107]
D VF_2226 degS; serine endoprotease DegS, periplasmic K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D VF_1122 prolyl endopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D VF_A0660 prolyl endopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D VF_A0333 ptrB; protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D VF_0745 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D VF_0474 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D VF_0796 clpP; proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D VF_0798 lon; DNA-binding ATP-dependent protease Lon (La) K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D VF_1293 ATP-dependent protease (Lon-like) K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D VF_2442 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D VF_1269 umuD; DNA polymerase V, subunit D K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D VF_2088 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D VF_A0792 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D VF_1280 prc; carboxy-terminal protease for penicillin-binding protein 3 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D VF_1643 sppA; protease IV (signal peptide peptidase) K04773 sppA; protease IV [EC:3.4.21.-]
D VF_1040 sohB; predicted inner membrane peptidase K04774 sohB; serine protease SohB [EC:3.4.21.-]
D VF_A1068 pepE; (alpha)-aspartyl dipeptidase K05995 pepE; dipeptidase E [EC:3.4.13.21]
D VF_2447 glpG; predicted intramembrane serine protease K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D VF_2277 hslV; peptidase component of the HslUV protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D VF_A0086 ggt; gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D VF_1990 yegQ; predicted peptidase K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D VF_1383 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D VF_0492 yhbV; Predicted collagenase-like protease YhbV K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D VF_0493 yhbU; Predicted collagenase-like protease YhbU K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D VF_0381 pmbA; predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 K03592 pmbA; PmbA protein
D VF_0379 tldD; predicted peptidase K03568 tldD; TldD protein
D VF_2320 hflC; modulator for HflB protease specific for phage lambda cII repressor K04087 hflC; modulator of FtsH protease HflC
D VF_2321 hflK; modulator for HflB protease specific for phage lambda cII repressor K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:vfi01003]
D VF_A0805 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D VF_A0884 bcsA; cellulose synthase, catalytic subunit K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D VF_2162 mrcB; fused glycosyl transferase and transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D VF_2298 mrcA; fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D VF_0180 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:vfi01005]
D VF_1950 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D VF_1949 lpxB; tetraacyldisaccharide-1-P synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D VF_2195 lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D VF_1952 lpxD; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D VF_1602 lpxH; UDP-2,3-diacylglucosamine pyrophosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D VF_A0425 lpxK; lipid A 4'kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D VF_A0687 htrB1; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D VF_0122 htrB2; lauryl-acyl carrier protein (ACP)-dependent acyltransferase (LpxL) K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D VF_1799 msbB; myristoyl-acyl carrier protein (ACP)-dependent acyltransferase (MsbB, LpxM) K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D VF_0138 waaA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D VF_A0210 eptA; predicted metal dependent hydrolase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D VF_0136 wavC; 3-deoxy-D-manno-octulosonic-acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D VF_0176 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D VF_0772 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D VF_0178 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D VF_A0427 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D VF_0177 3-deoxy-manno-octulosonate-8-phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D VF_0391 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D VF_0179 kpsF; arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D VF_0392 kdsD; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D VF_0134 alpha-L-glycero-D-manno-heptose beta-1,4-glucosyltransferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D VF_0139 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D VF_0151 waaL; O-antigen ligase K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D VF_0135 ADP-heptose--LPS heptosyltransferase III K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D VF_1931 lpcA; D-sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D VF_0687 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D VF_2234 rfaE; fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D VF_0152 rfaD; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D VF_0180 rfe; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:vfi01011]
D VF_0401 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D VF_2426 murB; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D VF_2200 murC; UDP-N-acetylmuramate:L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D VF_2203 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D VF_2206 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D VF_A0570 ddlA; D-alanine-D-alanine ligase A K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D VF_0302 alr; alanine racemase 1, PLP-binding, biosynthetic K01775 alr; alanine racemase [EC:5.1.1.1]
D VF_2433 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D VF_0856 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D VF_2204 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D VF_2201 murG; N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D VF_2245 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D VF_0465 yceN; predicted inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D VF_2298 mrcA; fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D VF_2162 mrcB; fused glycosyl transferase and transpeptidase K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D VF_0748 mrdA; transpeptidase (penicillin-binding protein 2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D VF_1481 penicillin binding protein transpeptidase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D VF_2207 ftsI; transpeptidase (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D VF_0745 dacA; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D VF_0474 dacB; D-alanyl-D-alanine carboxypeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D VF_1157 ycbB; predicted carboxypeptidase K21470 ycbB; L,D-transpeptidase YcbB
D VF_0831 yebA; predicted peptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D VF_0558 slt; lytic murein transglycosylase, soluble K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D VF_1329 soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D VF_0587 mltA; membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D VF_1702 mltB; membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D VF_1368 membrane-bound lytic murein transglycosylase C precursor K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D VF_0420 mltC; membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D VF_1939 mltD; predicted membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D VF_A0984 yfhD; predicted transglycosylase K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D VF_0651 amino-acid abc transporter binding protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D VF_1736 yceG; predicted aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D VF_0746 rlpA; minor lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D VF_2326 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D VF_2183 ampD; N-acetyl-anhydromuranmyl-L-alanine amidase K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:vfi01004]
D VF_1741 fabD; malonyl-CoA:(acyl carrier protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D VF_1742 fabH; 3-oxoacyl-(acyl carrier protein) synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D VF_0857 3-oxoacyl-(acyl carrier protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VF_1700 fabB; 3-oxoacyl-(acyl-carrier-protein)-synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VF_1738 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VF_0860 3-oxoacyl-(acyl carrier protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VF_0859 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VF_1740 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VF_1292 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D VF_1951 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D VF_0888 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D VF_A1044 tesA; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D VF_1577 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D VF_1258 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D VF_1024 yciA; predicted hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D VF_A0274 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D VF_2383 acs; acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VF_0533 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_1708 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2256 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2264 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2443 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D VF_1743 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D VF_2248 ygiH; conserved inner membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D VF_0402 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:vfi01008]
D VF_1547 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:vfi01006]
D VF_0712 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D VF_0277 ispB; octaprenyl diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D VF_1958 ispU; undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D VF_2324 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D VF_0212 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D VF_2444 ubiA; p-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:vfi01007]
D VF_1887 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VF_0809 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D VF_2653 yadB; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D VF_1727 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D VF_2286 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D VF_1600 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D VF_0839 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D VF_1754 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D VF_0467 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D VF_0411 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D VF_0753 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D VF_0453 lysU; lysine tRNA synthetase, inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D VF_0949 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D VF_1159 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D VF_0630 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D VF_0015 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D VF_0016 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D VF_0908 serS; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D VF_0682 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D VF_1214 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D VF_0536 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VF_0634 Predicted metal-dependent hydrolase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VF_1235 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D VF_1236 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D VF_A0283 aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VF_0014 avtA; valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D VF_1673 yfbQ; predicted aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D VF_1488 aspC; aspartate aminotransferase, PLP-dependent K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D VF_1014 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VF_A0418 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D VF_A0747 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D VF_1253 cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VF_1718 malY; bifunctional beta-cystathionase, PLP-dependent/regulator of maltose regulon K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VF_2284 argD; bifunctional acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D VF_A1123 ectB; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D VF_A0748 bioA; 7,8-diaminopelargonic acid synthase, PLP-dependent K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D VF_2135 hemL; glutamate-1-semialdehyde aminotransferase (aminomutase) K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D VF_2558 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VF_0339 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VF_0899 serC; 3-phosphoserine/phosphohydroxythreonine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:vfi00194]
D VF_2563 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D VF_2564 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D VF_2565 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D VF_2566 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D VF_2567 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D VF_2568 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D VF_2569 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D VF_2570 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D VF_2571 atpI; ATP synthase F0, I subunit K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:vfi03000]
D VF_0832 hypothetical protein K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VF_A0851 transcriptional regulatory protein K13652 K13652; AraC family transcriptional regulator
D VF_A0785 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D VF_0591 gcvA; DNA-binding transcriptional dual regulator, glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VF_A1066 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VF_2529 ilvY; DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VF_1722 metR; DNA-binding transcriptional activator, homocysteine-binding K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VF_0462 nhaR; DNA-binding transcriptional activator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VF_1974 hydrogen peroxide-inducible genes activator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VF_2299 oxyR; oxidative stress-responsive DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VF_2265 leuO; DNA-binding transcriptional activator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VF_1690 transcriptional regulator, LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VF_1490 cysB; DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VF_1545 yjiE; predicted DNA-binding transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D VF_1510 transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D VF_A1046 hdfR; DNA-binding transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D VF_A0238 glpR; glycerol-3-phosphate regulon repressor protein GlpR K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VF_A1006 agaR; DNA-binding transcriptional dual regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D VF_A0361 galR; DNA-binding transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VF_1255 transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VF_1449 rbsR; transcriptional repressor RbsR, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VF_2275 cytR; DNA-binding transcriptional repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VF_A0943 fruR; DNA-binding transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VF_1572 purR; DNA-binding transcriptional repressor, hypoxanthine-binding K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VF_A0348 ebgR; ebg operon repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D VF_1720 malI; DNA-binding transcriptional repressor K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
D VF_A0454 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VF_1633 fadR; DNA-binding transcriptional dual regulator of fatty acid metabolism K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VF_2182 pdhR; DNA-binding transcriptional of pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D VF_2522 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VF_0124 slmA; division inhibitor K05501 slmA; TetR/AcrR family transcriptional regulator
D VF_2177 litR; quorum sensing transcriptional regulator LitR (HapR) K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VF_A0088 transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VF_A0359 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VF_2438 transcriptional repressor of FabB K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D VF_0081 asnC; DNA-binding transcriptional dual regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VF_0904 lrp; DNA-binding transcriptional dual regulator, leucine-binding K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VF_1578 ybaO; predicted DNA-binding transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D VF_A0925 luxR; autoinducer-binding transcriptional activator protein LuxR K15852 luxR; LuxR family transcriptional regulator, transcriptional activator of the bioluminescence operon
D VF_2408 vpsT; DNA-binding transcriptional activator VpsT (CsgD-like) K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VF_A0811 malT; fused conserved protein: DNA-binding transcriptional activator/maltotriose-ATP-binding protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D VF_A0334 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D VF_0782 cueR; DNA-binding transcriptional activator of copper-responsive regulon genes K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VF_2393 zntR; DNA-binding transcriptional activator in response to Zn(II) K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VF_0810 fur; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D VF_0306 zur; DNA-binding transcriptional repressor, Zn(II)-binding K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D VF_2280 crp; DNA-binding transcriptional regulator CRP K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VF_1308 fnr; transcriptional regulatory protein Fnr, global regulator of anaerobic growth K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D VF_0616 iscR; Fe-S cluster synthesis regulatory protein IscR, DNA-binding transcriptional repressor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D VF_2315 nsrR; nitrite-responsive HTH-type transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D VF_2361 arsR; DNA-binding transcriptional repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VF_0463 hlyU; transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D VF_1113 yfeT; predicted DNA-binding transcriptional regulator K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VF_0891 yebK; predicted DNA-binding transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VF_2425 birA; BirA transcriptional repressor, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VF_2391 fis; global DNA-binding transcriptional dual regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VF_0559 trpR; DNA-binding transcriptional repressor, tryptophan-binding K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VF_A0557 sgrR; DNA-binding transcriptional regulator K11925 sgrR; SgrR family transcriptional regulator
D VF_1469 hipB; HipB transcriptional repressor, hipAB operon K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VF_1856 flrA; sigma-54-dependent transcriptional activator FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VF_0454 vpsR; sigma-54 dependent transcriptional regulator VpsR K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VF_0998 transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VF_1783 norR1; anaerobic nitric oxide reductase regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VF_A0862 norR2; anaerobic nitric oxide reductase regulatory protein 2, NorR2 K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VF_2155 cdaR; DNA-binding transcriptional activator K02647 cdaR; carbohydrate diacid regulator
D VF_1353 virulence gene repressor RsaL K07726 K07726; putative transcriptional regulator
D VF_A0054 transcriptional repressor, Cro/CI family K07727 K07727; putative transcriptional regulator
D VF_2268 metJ; DNA-binding transcriptional repressor, S-adenosylmethionine-binding K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VF_A0832 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D VF_0724 bolA; regulator of penicillin binding proteins and beta lactamase transcription (morphogene) K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VF_2572 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VF_A1171 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VF_0803 rfaH; DNA-binding transcriptional antiterminator K05785 rfaH; transcriptional antiterminator RfaH
D VF_0275 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D VF_0806 nagC; DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine K02565 nagC; N-acetylglucosamine repressor
D VF_A0496 dgsA; DNA-binding transcriptional repressor K15545 mlc; transcriptional regulator of PTS gene
D VF_A0320 transcriptional activator TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D VF_A0751 tyrR; DNA-binding transcriptional regulator, tyrosine-binding K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VF_2060 cadC; DNA-binding transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D VF_1919 gcvR; DNA-binding transcriptional repressor, regulatory protein accessory to GcvA K03567 gcvR; glycine cleavage system transcriptional repressor
D VF_A0310 pspF; DNA-binding transcriptional activator K03974 pspF; psp operon transcriptional activator
D VF_A0313 pspC; PspC transcriptional regulator, toxin of PspCB toxin-antitoxin pair K03973 pspC; phage shock protein C
D VF_A0523 DNA-binding protein K07733 alpA; prophage regulatory protein
D VF_0434 yqgE; predicted protein K07735 algH; putative transcriptional regulator
D VF_2165 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D VF_0699 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
C 03021 Transcription machinery [BR:vfi03021]
D VF_0262 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D VF_2657 hypothetical protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D VF_2414 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D VF_2412 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D VF_0105 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D VF_2254 rpoD; RNA polymerase, sigma-70 (sigma-D) factor K03086 rpoD; RNA polymerase primary sigma factor
D VF_2067 rpoS; RNA polymerase, sigma-S (sigma-38) factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D VF_A1015 rpoQ; sigma-Q factor RpoQ, quorum-sensing regulated RpoS-like sigma subunit K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D VF_2093 rpoE; RNA polymerase, sigma-24 (sigma-E) factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D VF_0972 rpoE2; RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D VF_A0766 rpoE4; RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D VF_A0820 rpoE3; RNA polymerase ECF-type sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D VF_2450 rpoH; RNA polymerase, sigma-32 (sigma-H) factor K03089 rpoH; RNA polymerase sigma-32 factor
D VF_0387 rpoN; RNA polymerase, sigma 54 (sigma N) factor K03092 rpoN; RNA polymerase sigma-54 factor
D VF_1834 fliA; RNA polymerase, sigma-28 (sigma-F, FliA) factor K02405 fliA; RNA polymerase sigma factor FliA
D VF_0270 hepA; RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D VF_0485 nusA; transcription termination/antitermination L factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D VF_0704 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D VF_2421 nusG; transcription termination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D VF_2216 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D VF_2215 sspB; ClpXP protease specificity-enhancing factor K03600 sspB; stringent starvation protein B
D VF_2092 rseA; anti-sigmaE factor, inner membrane K03597 rseA; sigma-E factor negative regulatory protein RseA
D VF_2091 rseB; periplasmic sigmaE factor regulatory protein RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D VF_2090 rseC; sigma-E factor regulatory protein RseC K03803 rseC; sigma-E factor negative regulatory protein RseC
D VF_2165 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D VF_0476 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA
D VF_0121 greB; transcription elongation factor K04760 greB; transcription elongation factor GreB
D VF_0058 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:vfi03019]
D VF_1748 rne; rne K08300 rne; ribonuclease E [EC:3.1.26.12]
D VF_0376 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D VF_2087 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D VF_2314 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D VF_2329 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D VF_0056 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D VF_A0374 ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VF_A0151 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VF_1790 ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VF_A0384 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D VF_0070 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VF_A1156 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VF_2075 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VF_0490 pnp; polynucleotide phosphorylase (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D VF_0058 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D VF_2340 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VF_1994 dnaK; chaperone Hsp70/DnaK, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D VF_1467 chaperone, DnaK-like protein K04043 dnaK; molecular chaperone DnaK
D VF_0205 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VF_2323 hfq; RNA chaperone Hfq (HF-I) K03666 hfq; host factor-I protein
D VF_2166 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D VF_0456 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D VF_0538 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator
D VF_0355 csrD; conserved inner membrane protein K18765 csrD; RNase E specificity factor CsrD
D VF_2119 rraA2; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A
D VF_0211 rraA; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A
D VF_0409 rraB; conserved protein K09893 rraB; regulator of ribonuclease activity B
D VF_0384 yhbJ; predicted protein with nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ
D VF_1500 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D VF_2163 hrpB; predicted ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D VF_2578 ryhB; RyhB regulatory antisense RNA involved in iron homeostasis K18507 ryhB; small regulatory RNA RyhB
D VF_2577 csrB2; CsrB2 RNA, regulator of CsrA K18515 csrB; small regulatory RNA CsrB
D VF_2593 csrB1; CsrB1 RNA, regulator of CsrA K18515 csrB; small regulatory RNA CsrB
D VF_2579 spf; Spot 42 regulatory RNA K18527 spf; small regulatory RNA Spot 42
C 03041 Spliceosome
C 03011 Ribosome [BR:vfi03011]
D VF_1759 rpsA; 30S ribosomal subunit protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D VF_1962 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D VF_0242 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D VF_0261 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D VF_0254 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D VF_2312 rpsF; 30S ribosomal subunit protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D VF_0231 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D VF_0251 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D VF_2221 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D VF_0234 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D VF_0260 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D VF_0230 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D VF_0259 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D VF_0250 rpsN; 30S ribosomal subunit protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D VF_0489 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D VF_0549 rpsP; 30S ribosomal subunit protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D VF_0245 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D VF_2311 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D VF_0240 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D VF_0464 rpsT; 30S ribosomal subunit protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D VF_2250 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D VF_2418 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D VF_0239 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D VF_0235 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D VF_0237 rplD; 50S ribosomal subunit protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D VF_0249 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D VF_0252 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D VF_2310 rplI; 50S ribosomal subunit protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D VF_2416 rplJ; 50S ribosomal subunit protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D VF_2419 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D VF_2415 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D VF_2222 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D VF_0246 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D VF_0256 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D VF_0243 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D VF_0263 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D VF_0253 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D VF_0552 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D VF_1218 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D VF_0278 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D VF_0241 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D VF_0238 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D VF_0248 rplX; 50S ribosomal subunit protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D VF_0279 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D VF_0127 rpmB; 50S ribosomal subunit protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D VF_0244 rpmC; 50S ribosomal subunit protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D VF_0255 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D VF_2273 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D VF_1744 rpmF; 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D VF_0128 rpmG; 50S ribosomal subunit protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D VF_0005 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D VF_1217 rpmI; 50S ribosomal subunit protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D VF_0258 rpmJ; 50S ribosomal subunit protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D VF_0862 rplY; 50S ribosomal subunit protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D VF_AR0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0009 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0003 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0019 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0029 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0013 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0026 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0010 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0032 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0022 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0006 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0016 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0025 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0015 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0034 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0031 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_AR0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0028 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0021 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0018 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0012 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0008 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0011 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0033 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_AR0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0014 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0027 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0030 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:vfi03009]
D VF_2087 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D VF_A1077 RIO1 protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D VF_2329 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D VF_2086 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D VF_0280 obgE; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
D VF_2165 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D VF_0485 nusA; transcription termination/antitermination L factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D VF_0704 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D VF_2421 nusG; transcription termination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D VF_0880 rsuA; 16S rRNA pseudouridylate 516 synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D VF_0286 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D VF_2545 rsmB; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D VF_2137 rsmC; 16S rRNA m2G1207 methylase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D VF_2454 rsmD; predicted methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D VF_0436 rsmE; predicted protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D VF_1274 rsmF; predicted methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D VF_2574 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D VF_2209 mraW; S-adenosyl-dependent methyltransferase activity on membrane-located substrates K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D VF_2210 yraL; predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D VF_0082 yhiQ; SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D VF_1796 rrmA; 23S rRNA m1G745 methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D VF_2313 rlmB; 23S rRNA (Gm2251)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D VF_0478 rrmJ; 23S rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D VF_A1153 ybiN; predicted SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D VF_0723 rlmG; predicted methyltransferase small domain K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D VF_0749 ybeA; conserved protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D VF_1505 methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D VF_1021 methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D VF_2488 yhiR; predicted DNA (exogenous) processing protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D VF_1287 rlmL; predicted methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D VF_0593 ygdE; predicted methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D VF_0626 yfgB; predicted enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D VF_2081 rumA; 23S rRNA (uracil-5)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D VF_A0484 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VF_A0485 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VF_0271 rluA; pseudouridine synthase for 23S rRNA and tRNAphe K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VF_1020 23S rRNA and tRNA pseudouridine synthase (RluA-like) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VF_1038 rluB; 23S rRNA pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D VF_1747 rluC; 23S rRNA pseudouridylate synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D VF_0564 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D VF_1776 rluE; 23S rRNA pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D VF_1568 rluF; 23S rRNA pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D VF_0499 rimI; acetylase for 30S ribosomal subunit protein S18 K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D VF_1389 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D VF_A0750 rimJ; ribosomal-protein-S5-alanine N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D VF_0658 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D VF_1345 rimL; ribosomal-protein-L7/L12-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
D VF_0550 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D VF_2388 prmA; methylase for 50S ribosomal subunit protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D VF_1806 prmB; N5-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D VF_1592 ycfD; conserved protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D VF_1748 rne; rne K08300 rne; ribonuclease E [EC:3.1.26.12]
D VF_0376 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D VF_0433 yqgF; predicted Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D VF_A0154 dbpA; ATP-dependent RNA helicase, specific for 23S rRNA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D VF_A0384 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D VF_0444 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D VF_2330 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D VF_A0018 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D VF_0633 der; predicted GTP-binding protein K03977 engA; GTPase
D VF_A0511 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
D VF_2322 hflX; predicted GTPase K03665 hflX; GTPase
D VF_0971 GTP-binding protein HflX K03665 hflX; GTPase
D VF_2536 rimN; predicted ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D VF_0104 spoT; bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D VF_0487 rbfA; 30s ribosome binding factor K02834 rbfA; ribosome-binding factor A
D VF_0484 YhbC-like protein K09748 rimP; ribosome maturation factor RimP
D VF_A0263 hypothetical protein K14761 rlbA; ribosome-associated protein
D VF_0750 ybeB; predicted protein K09710 ybeB; ribosome-associated protein
D VF_0757 ybeY; conserved protein K07042 ybeY; probable rRNA maturation factor
D VF_0477 yhbY; predicted RNA-binding protein K07574 yhbY; RNA-binding protein
D VF_A1154 yibL; conserved protein K14762 yibL; ribosome-associated protein
D VF_0380 yjgA; conserved protein K09889 yjgA; ribosome-associated protein
D VF_1291 ribosome modulation factor K03812 rmf; ribosome modulation factor
D VF_0386 hpf; predicted ribosome-associated, sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D VF_0562 raiA; stationary phase translation inhibitor and ribosome stability factor RaiA (YfiA) K05809 raiA; ribosome-associated inhibitor A
D VF_0762 ychF; predicted GTP-binding protein K06942 ychF; ribosome-binding ATPase
D VF_1745 yceD; conserved protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:vfi03016]
D VF_2244 cca; fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D VF_1887 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VF_0682 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D VF_0467 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D VF_0753 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D VF_1754 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D VF_0809 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D VF_0839 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D VF_0453 lysU; lysine tRNA synthetase, inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D VF_0949 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D VF_0536 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VF_0634 Predicted metal-dependent hydrolase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VF_1159 asnS; asparaginyl tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D VF_1214 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D VF_0908 serS; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D VF_1600 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D VF_0411 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D VF_0630 hisS; histidyl tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D VF_1235 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D VF_1236 pheT; phenylalanine tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D VF_1727 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D VF_2286 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D VF_0101 dtd; D-tyr-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D VF_1134 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D VF_2589 trmB; tRNA (guanine-N(7))-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D VF_0683 yaeB; conserved protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D VF_1696 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D VF_0488 truB; tRNA pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D VF_2071 truD; pseudoruidine synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D VF_0617 iscS; Sulfur mobilization protein for Fe-S synthesis, cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D VF_2536 rimN; predicted ribosome maturation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D VF_2324 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D VF_0002 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D VF_2575 mnmG; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D VF_2462 cysQ; PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D VF_0004 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D VF_2654 rnpB; RnpB RNA, catalytic subunit of RNase P K01978 rnpB; M1 RNA
D VF_0925 rnt; ribonuclease T (RNase T) K03683 rnt; ribonuclease T [EC:3.1.13.-]
D VF_0111 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D VF_A0383 rnb; ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D VF_1707 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D VF_0557 yjjK; fused predicted transporter subunits of ABC superfamily: ATP-binding components K06020 ettA; energy-dependent translational throttle protein EttA
D VF_0015 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D VF_0016 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D VF_2653 yadB; glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D VF_1792 ybaK; conserved protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D VF_0650 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D VF_0307 NifR3/Smm1 family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D VF_2389 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D VF_1638 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D VF_0759 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D VF_0948 methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D VF_0947 cmoB; predicted S-adenosyl-L-methionine-dependent methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D VF_A0429 smtA; predicted S-adenosyl-L-methionine-dependent methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D VF_2436 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D VF_0551 trmD; tRNA (guanine-1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D VF_0103 trmH; tRNA (Guanosine-2'-O-)-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D VF_0615 trmJ; predicted methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D VF_A0955 predicted SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D VF_2345 yibK; predicted rRNA methylase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D VF_0445 yfiC; predicted S-adenosyl-L-methionine-dependent methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D VF_0613 truC; tRNA pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D VF_A0484 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VF_A0485 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VF_0271 rluA; pseudouridine synthase for 23S rRNA and tRNAphe K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VF_1020 23S rRNA and tRNA pseudouridine synthase (RluA-like) K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VF_1784 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D VF_1311 ttcA; predicted C32 tRNA thiolase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D VF_0019 tusA; sulfur transfer protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D VF_2582 tusB; sulfur transfer protein complex, TusB subunit K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D VF_0229 tusC; sulfur transfer protein complex, TusC subunit K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D VF_0228 tusD; sulfur transfer protein complex, TusD subunit K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D VF_1501 tusE; sulfur transfer protein TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D VF_0619 iscA; Fe-S cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D VF_2097 ygfZ; predicted folate-dependent regulatory protein K06980 ygfZ; tRNA-modifying protein YgfZ
D VF_1492 tRNA-(MS(2)IO(6)A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D VF_1701 mnmC; fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D VF_1970 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D VF_1580 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D VF_1160 sscR; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D VF_A0495 ygcF; conserved protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D VF_0598 queF; hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D VF_2328 yjeS; predicted Fe-S electron transport protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D VF_1969 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D VF_0716 thiI; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D VF_1945 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D VF_A1169 ypfI; predicted hydrolase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D VF_1712 yeaZ; predicted peptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D VF_2249 ygjD; predicted peptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D VF_2327 yjeE; ATPase with strong ADP affinity K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D VF_0588 ygdL; conserved protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D VF_2314 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D VF_0490 pnp; polynucleotide phosphorylase (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:vfi03012]
D VF_A0573 yciH; conserved protein K03113 EIF1; translation initiation factor 1
D VF_0486 infB; fused protein chain initiation factor 2, IF2: membrane protein/conserved protein K02519 infB; translation initiation factor IF-2
D VF_1216 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D VF_0218 yheS; fused predicted transporter subunits of ABC superfamily: ATP-binding components K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D VF_1961 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D VF_2423 tufA; protein chain elongation factor EF-Tu (duplicate of tufB) K02358 tuf; elongation factor Tu
D VF_0233 tufB; protein chain elongation factor EF-Tu (duplicate of tufA) K02358 tuf; elongation factor Tu
D VF_0232 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D VF_0529 fusA2; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D VF_0768 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1
D VF_1959 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D VF_0769 prmC; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D VF_0763 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D VF_1764 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D VF_2338 efp; Elongation factor EF-P K02356 efp; elongation factor P
D VF_1272 yeiP; predicted elongtion factor K02356 efp; elongation factor P
D VF_2333 poxA; predicted lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D VF_2339 yjeK; predicted lysine aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D VF_1802 yfcM; conserved protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D VF_0452 prfB; peptide chain release factor RF-2 K02836 prfB; peptide chain release factor 2
D VF_0500 prfC; peptide chain release factor RF-3 K02837 prfC; peptide chain release factor 3
D VF_A0413 hypothetical protein K09890 arfA; alternative ribosome-rescue factor
D VF_A1155 yaeJ; conserved protein K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:vfi03110]
D VF_1765 clpA; ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D VF_0566 clpB; protein disaggregation chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D VF_0797 clpX; ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D VF_2278 hslU; molecular chaperone and ATPase component of HslUV protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D VF_0792 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D VF_1994 dnaK; chaperone Hsp70/DnaK, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D VF_1467 chaperone, DnaK-like protein K04043 dnaK; molecular chaperone DnaK
D VF_0621 hscA; DnaK-like molecular chaperone specific for Fe-S scaffold IscU K04044 hscA; molecular chaperone HscA
D VF_1207 yegD; predicted chaperone K04046 yegD; hypothetical chaperone protein
D VF_0205 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VF_1993 dnaJ; chaperone Hsp40/DnaJ, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D VF_1108 chaperone protein DnaJ-like protein K03686 dnaJ; molecular chaperone DnaJ
D VF_0290 djlA; DnaJ-like protein, membrane anchored K05801 djlA; DnaJ like chaperone protein
D VF_0620 hscB; DnaJ-like molecular chaperone specific for Fe-S scaffold IscU K04082 hscB; molecular chaperone HscB
D VF_2477 hslO; heat shock and oxidative stress chaperone Hsp33 K04083 hslO; molecular chaperone Hsp33
D VF_1996 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D VF_1466 small heat shock protein K04080 ibpA; molecular chaperone IbpA
D VF_0013 ibpA; heat shock chaperone K04080 ibpA; molecular chaperone IbpA
D VF_2476 hslR; ribosome-associated heat shock protein Hsp15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D VF_0204 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES
D VF_2225 degP; serine endoprotease DegP (protease Do), periplasmic K04771 degP; serine protease Do [EC:3.4.21.107]
D VF_0479 hflB; ATP-dependent zinc-metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D VF_2570 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D VF_2349 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D VF_2342 cpxP; periplasmic protein CpxP, modulator of CpxAR signaling K06006 cpxP; periplasmic protein CpxP/Spy
D VF_A0818 conserved protein K09796 pccA; periplasmic copper chaperone A
D VF_1571 torD; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I K03533 torD; TorA specific chaperone
D VF_A0083 dmsD; twin-argninine leader-binding protein for DmsA and TorA K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D VF_A1010 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_2146 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_0037 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VF_0721 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D VF_1601 ppiB; peptidyl-prolyl cis-trans isomerase B (rotamase B) K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D VF_1098 peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D VF_0800 ppiD; peptidyl-prolyl cis-trans isomerase (rotamase D) K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D VF_0226 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D VF_0314 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D VF_0469 fkpB; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D VF_0223 slyD; FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D VF_A0697 ppiC; peptidyl-prolyl cis-trans isomerase C (rotamase C) K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D VF_0288 surA; peptidyl-prolyl cis-trans isomerase (PPIase) K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D VF_0057 trxA; thioredoxin K03671 TXN; thioredoxin
D VF_0909 trxC; thioredoxin 2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D VF_0783 ybbN; predicted thioredoxin domain-containing protein K05838 ybbN; putative thioredoxin
D VF_0890 grxA; glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) K03674 grxA; glutaredoxin 1
D VF_1584 grxB; glutaredoxin 2 (Grx2) K03675 grxB; glutaredoxin 2
D VF_1496 glutaredoxin K03676 grxC; glutaredoxin 3
D VF_0922 grxD; glutaredoxin 4 K07390 grxD; monothiol glutaredoxin
D VF_2553 dsbA; periplasmic protein disulfide isomerase I K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D VF_0646 periplasmic protein disulfide isomerase, DsbA-like protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D VF_1635 dsbB; oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D VF_0449 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D VF_2356 dipZ; fused thiol:disulfide interchange protein: activator of DsbC/conserved protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D VF_1818 ccmG; periplasmic thioredoxin of cytochrome c-type biogenesis K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D VF_1549 thiol:disulfide interchange protein TlpA K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:vfi04131]
D VF_0625 ndk; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D VF_A0964 integral membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D VF_0913 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D VF_2258 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VF_A0494 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VF_0792 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:vfi04121]
C 03051 Proteasome [BR:vfi03051]
D VF_0792 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:vfi03032]
D VF_A0524 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D VF_1936 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D VF_2397 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D VF_0799 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D VF_1237 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
D VF_1758 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D VF_0009 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D VF_0301 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D VF_2252 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D VF_0353 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VF_B0045 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D VF_1947 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VF_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VF_0412 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VF_0751 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VF_1734 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VF_2514 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0016 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_2382 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_1935 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0349 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_1687 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VF_0498 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VF_1948 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D VF_0074 polA; fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VF_1890 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D VF_2289 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D VF_0815 seqA; regulatory protein for replication initiation K03645 seqA; negative modulator of initiation of replication
D VF_1204 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D VF_0012 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D VF_2227 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D VF_2228 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D VF_1051 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D VF_1641 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D VF_B0046 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:vfi03036]
D VF_2087 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D VF_1631 hns; global DNA-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS
D VF_2397 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D VF_0799 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D VF_1237 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
D VF_1758 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D VF_0009 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D VF_2213 diaA; DnaA initiator-associating factor for replication initiation K12961 diaA; DnaA initiator-associating protein
D VF_2391 fis; global DNA-binding transcriptional dual regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VF_2323 hfq; RNA chaperone Hfq (HF-I) K03666 hfq; host factor-I protein
D VF_0904 lrp; DNA-binding transcriptional dual regulator, leucine-binding K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VF_1648 yejK; nucleotide associated protein K06899 ndpA; nucleoid-associated protein
D VF_A0432 mukB; fused chromosome partitioning protein: predicted nucleotide hydrolase K03632 mukB; chromosome partition protein MukB
D VF_A0431 mukE; protein involved in chromosome partitioning K03804 mukE; chromosome partition protein MukE
D VF_A0430 mukF; calcium-binding protein involved in chromosome partioning K03633 mukF; chromosome partition protein MukF
D VF_2197 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D VF_2074 ftsB; cell division protein K05589 ftsB; cell division protein FtsB
D VF_2452 ftsE; predicted transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D VF_2207 ftsI; transpeptidase (penicillin-binding protein 3) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D VF_0905 ftsK; DNA-binding membrane protein required for chromosome resolution and partitioning K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D VF_2208 ftsL; membrane bound cell division protein at septum containing leucine zipper motif K03586 ftsL; cell division protein FtsL
D VF_2199 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D VF_2202 ftsW; integral membrane protein involved in stabilizing FtsZ ring during cell division K03588 ftsW; cell division protein FtsW
D VF_2451 ftsX; predicted transporter subunit: membrane component of ABC superfamily K09811 ftsX; cell division transport system permease protein
D VF_2196 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D VF_1891 zipA; cell division protein involved in Z ring assembly K03528 zipA; cell division protein ZipA
D VF_2103 hypothetical protein K09888 zapA; cell division protein ZapA
D VF_0210 transcriptional regulator K09892 zapB; cell division protein ZapB
D VF_1286 ycbW; predicted protein K18657 zapC; cell division protein ZapC
D VF_2190 yacF; conserved protein K18778 zapD; cell division protein ZapD
D VF_2223 yhcM; conserved protein with nucleoside triphosphate hydrolase domain K06916 zapE; cell division protein ZapE
D VF_0315 opacity associated protein OapA K07269 ytfB; cell division protein YtfB
D VF_2326 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D VF_A1152 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_2523 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_1582 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_1704 minC; septum inhibitor protein of the MinC-MinD-MinE system K03610 minC; septum site-determining protein MinC
D VF_1705 minD; membrane ATPase of the MinC-MinD-MinE system K03609 minD; septum site-determining protein MinD
D VF_1706 minE; cell division topological specificity factor of the MinC-MinD-MinE system K03608 minE; cell division topological specificity factor
D VF_1493 hypothetical protein K13053 sulA; cell division inhibitor SulA
D VF_0124 slmA; division inhibitor K05501 slmA; TetR/AcrR family transcriptional regulator
D VF_0815 seqA; regulatory protein for replication initiation K03645 seqA; negative modulator of initiation of replication
D VF_0372 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D VF_0373 mreC; cell wall structural complex MreBCD transmembrane component MreC K03570 mreC; rod shape-determining protein MreC
D VF_0374 mreD; cell wall structural complex MreBCD transmembrane component MreD K03571 mreD; rod shape-determining protein MreD
D VF_0747 mrdB; cell wall shape-determining protein K05837 rodA; rod shape determining protein RodA
D VF_A0483 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D VF_2573 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VF_0113 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VF_1829 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VF_A0877 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VF_B0013 hypothetical protein K03496 parA; chromosome partitioning protein
D VF_A1172 ParA family protein K03496 parA; chromosome partitioning protein
D VF_2572 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VF_A1171 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VF_2227 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D VF_2228 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D VF_2575 mnmG; glucose-inhibited cell-division protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D VF_2574 gidB; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D VF_2483 xerC; site-specific tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D VF_0448 xerD; site-specific tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D VF_1753 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D VF_0075 yihA; cell division GTPase YihA K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:vfi03400]
D VF_A0177 ogt; O-6-alkylguanine-DNA:cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D VF_A0753 phr; deoxyribodipyrimidine photolyase Phr, FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D VF_2113 ung; uracil-DNA-glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D VF_0422 mutY; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D VF_0929 nth; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D VF_2192 mutT; nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VF_1471 hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D VF_A0815 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D VF_0130 mutM; formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D VF_1583 xthA; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D VF_2114 nfo; endonuclease IV with intrinsic 3'-5' exonuclease activity K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D VF_0450 recJ; ssDNA exonuclease, 5' --> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D VF_1890 ligA; DNA ligase, NAD(+)-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D VF_0074 polA; fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VF_0341 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D VF_0936 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D VF_1626 uvrC; excinuclease UvrABC, endonuclease subunit K03703 uvrC; excinuclease ABC subunit C
D VF_0068 uvrD; DNA-dependent ATPase I and helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VF_2657 hypothetical protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D VF_2414 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D VF_2412 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D VF_0262 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D VF_0105 rpoZ; RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D VF_A0460 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D VF_0534 mutS; methyl-directed mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D VF_2325 mutL; methyl-directed mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D VF_0455 mutH; methyl-directed mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH
D VF_1482 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D VF_0636 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D VF_0713 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D VF_1947 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VF_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VF_0412 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VF_0751 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VF_1734 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VF_2514 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0016 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_2382 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_1935 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_A0349 DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VF_1687 dnaX; DNA polymerase III/DNA elongation factor III, tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VF_0498 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VF_0353 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VF_B0045 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D VF_2289 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D VF_0582 recB; exonuclease V (RecBCD complex), beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D VF_0581 recC; exonuclease V (RecBCD complex), gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D VF_0583 recD; exonuclease V (RecBCD complex), alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D VF_0535 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D VF_0951 ruvA; component of RuvABC resolvasome, regulatory subunit K03550 ruvA; holliday junction DNA helicase RuvA
D VF_0952 ruvB; ATP-dependent DNA helicase, component of RuvABC resolvasome K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D VF_0950 ruvC; component of RuvABC resolvasome, endonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D VF_2274 priA; Primosome factor n' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D VF_2656 primosomal replication protein N K02686 priB; primosomal replication protein N
D VF_1007 primosomal replication protein N' K04067 priC; primosomal replication protein N''
D VF_1168 sbcC; exonuclease, dsDNA, ATP-dependent K03546 sbcC; DNA repair protein SbcC/Rad50
D VF_1167 sbcD; exonuclease, dsDNA, ATP-dependent K03547 sbcD; DNA repair protein SbcD/Mre11
D VF_0528 radA; predicted repair protein K04485 radA; DNA repair protein RadA/Sms
D VF_0011 recF; gap repair protein K03629 recF; DNA replication and repair protein RecF
D VF_2460 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D VF_1354 DNA-binding protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D VF_2085 recO; gap repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D VF_1685 recR; gap repair protein K06187 recR; recombination protein RecR
D VF_1998 recN; recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D VF_1989 rdgC; DNA-binding protein, non-specific K03554 rdgC; recombination associated protein RdgC
D VF_0864 yejH; predicted ATP-dependet helicase K19789 radD; DNA repair protein RadD
D VF_1204 gyrA; DNA gyrase (type II topoisomerase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D VF_0012 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D VF_1051 topA; DNA topoisomerase I, omega subunit K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D VF_2397 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D VF_0799 hupB; HU, DNA-binding transcriptional regulator, beta subunit K03530 hupB; DNA-binding protein HU-beta
D VF_2391 fis; global DNA-binding transcriptional dual regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VF_1237 ihfA; integration host factor (IHF), DNA-binding protein, alpha subunit K04764 ihfA; integration host factor subunit alpha
D VF_1758 ihfB; integration host factor (IHF), DNA-binding protein, beta subunit K05788 ihfB; integration host factor subunit beta
D VF_0070 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VF_A1156 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VF_1631 hns; global DNA-binding transcriptional dual regulator H-NS K03746 hns; DNA-binding protein H-NS
D VF_0734 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D VF_1269 umuD; DNA polymerase V, subunit D K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D VF_2442 lexA; DNA-binding transcriptional repressor of SOS regulon K01356 lexA; repressor LexA [EC:3.4.21.88]
D VF_1628 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D VF_A0909 hypothetical protein K03565 recX; regulatory protein
D VF_2521 rep; DNA helicase and single-stranded DNA-dependent ATPase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D VF_1622 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D VF_1465 superfamily I DNA and RNA helicase K03658 helD; DNA helicase IV [EC:5.6.2.4]
D VF_1009 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D VF_1713 yoaA; conserved protein with nucleoside triphosphate hydrolase domain K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D VF_1202 nrdA; ribonucleoside diphosphate reductase 1, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D VF_1201 nrdB; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:vfi03029]
D VF_2218 cytochrome b K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D VF_0486 infB; fused protein chain initiation factor 2, IF2: membrane protein/conserved protein K02519 infB; translation initiation factor IF-2
D VF_1216 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D VF_1961 tsf; protein chain elongation factor EF-Ts K02357 tsf; elongation factor Ts
D VF_2423 tufA; protein chain elongation factor EF-Tu (duplicate of tufB) K02358 tuf; elongation factor Tu
D VF_0233 tufB; protein chain elongation factor EF-Tu (duplicate of tufA) K02358 tuf; elongation factor Tu
D VF_0232 fusA; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D VF_0529 fusA2; protein chain elongation factor EF-G, GTP-binding K02355 fusA; elongation factor G
D VF_2086 era; membrane-associated, 16S rRNA-binding GTPase K03595 era; GTPase
D VF_1727 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D VF_0753 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D VF_0949 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D VF_0839 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D VF_0353 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VF_B0045 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D VF_1954 yaeT; beta barrel component of outer membrane protein assembly complex (YaeT, Omp85) K07277 SAM50; outer membrane protein insertion porin family
D VF_1994 dnaK; chaperone Hsp70/DnaK, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D VF_1467 chaperone, DnaK-like protein K04043 dnaK; molecular chaperone DnaK
D VF_1996 grpE; heat shock protein K03687 GRPE; molecular chaperone GrpE
D VF_0205 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VF_0204 groS; Cpn10 chaperonin GroES, small subunit of GroESL K04078 groES; chaperonin GroES
D VF_1993 dnaJ; chaperone Hsp40/DnaJ, co-chaperone with DnaK K03686 dnaJ; molecular chaperone DnaJ
D VF_1108 chaperone protein DnaJ-like protein K03686 dnaJ; molecular chaperone DnaJ
D VF_0617 iscS; Sulfur mobilization protein for Fe-S synthesis, cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D VF_0620 hscB; DnaJ-like molecular chaperone specific for Fe-S scaffold IscU K04082 hscB; molecular chaperone HscB
D VF_0922 grxD; glutaredoxin 4 K07390 grxD; monothiol glutaredoxin
D VF_1753 mrp; antiporter inner membrane protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D VF_0003 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VF_A0817 Sco1-related protein K07152 SCO1; protein SCO1
D VF_0792 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:vfi02000]
D VF_A0424 msbA; fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D VF_0974 mdlA; fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D VF_0975 mdlB; fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D VF_A0509 multidrug resistance ABC transporter ATP-binding and permease protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D VF_1277 transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D VF_A1165 rtxB; ATP-binding protein, putative RTX transport secretion component RtxB K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D VF_0900 cydC; fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D VF_0901 cydD; fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D VF_1289 uup; fused predicted transporter subunits of ABC superfamily: ATP-binding components K15738 uup; ABC transport system ATP-binding/permease protein
D VF_A0290 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D VF_A0291 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D VF_A0292 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D VF_1402 modA2; molybdate ABC transporter, periplasmic binding protein ModA K05772 tupA; tungstate transport system substrate-binding protein
D VF_1403 modB2; molybdate ABC transporter, permease ModB K05773 tupB; tungstate transport system permease protein
D VF_1404 modC2; molybdate ABC transporter, ATP-binding component ModC K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D VF_2151 iron(III) ABC transporter, periplasmic binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D VF_2150 iron(III)-transport system permease protein SfuB K02011 afuB; iron(III) transport system permease protein
D VF_2149 iron(III)-transport system ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D VF_0267 thiB; thiamine/thiamine pyrophosphate ABC transporter, thiamine/thiamine pyrophospate-binding protein ThiB/TbpA/SfuA K02064 thiB; thiamine transport system substrate-binding protein
D VF_0268 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein ThiP/SfuB K02063 thiP; thiamine transport system permease protein
D VF_0269 thiQ; thiamine ABC transporter, ATP-binding protein ThiQ/SfuC K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D VF_1319 potD1; polyamine transporter binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D VF_1318 potD2; polyamine transporter binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D VF_1317 potC; polyamine transporter permease protein K11070 potC; spermidine/putrescine transport system permease protein
D VF_1316 potB; polyamine transporter permease protein K11071 potB; spermidine/putrescine transport system permease protein
D VF_1315 potA; polyamine transporter ATPase protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D VF_A1087 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D VF_A1090 ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D VF_A1089 ABC transporter permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D VF_A1091 afuC; CP4-6 prophage; predicted ferric transporter subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D VF_0785 proX; glycine betaine transporter subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein
D VF_A1050 glycine betaine-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D VF_0786 proW; glycine betaine transporter subunit K02001 proW; glycine betaine/proline transport system permease protein
D VF_0787 proV; glycine betaine transporter subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D VF_A0319 hydroxymethylpyrimidine-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D VF_A0318 tauC; taurine transporter permease subunit K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D VF_A0317 hydroxymethylpyrimidine transport ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D VF_A0097 ynjB; ABC transporter substrate-binding protein K05777 ynjB; putative thiamine transport system substrate-binding protein
D VF_A0096 ABC transporter permease protein K05778 ynjC; putative thiamine transport system permease protein
D VF_A0095 ynjD; predicted transporter subunit: ATP-binding component of ABC superfamily K05779 ynjD; putative thiamine transport system ATP-binding protein
D VF_A0799 malE; periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D VF_A0798 malF; maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D VF_A0797 malG; maltose ABC transporter, permease protein K10110 malG; maltose/maltodextrin transport system permease protein
D VF_A0800 malK; fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D VF_2046 malK2; maltose/maltodextrin transport ATP-binding protein MalK2 K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D VF_2043 malE2; maltose/maltodextrin-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D VF_2044 malF2; maltose transport system permease protein MalF K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D VF_2045 malG2; maltose transport system permease protein MalG K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D VF_1447 rbsB; D-ribose-binding protein, RbsB K10439 rbsB; ribose transport system substrate-binding protein
D VF_1446 rbsC; ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D VF_1445 rbsA; ribose transport ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D VF_A0835 ybbM; predicted inner membrane protein K02069 STAR2; UDP-glucose/iron transport system permease protein
D VF_0396 yrbD; predicted ABC-type organic solvent transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D VF_0395 yrbE; predicted toluene transporter subunit: membrane component of ABC superfamily K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D VF_0394 yrbF; predicted toluene transporter subunit: ATP-binding component of ABC superfamily K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D VF_0397 yrbC; predicted ABC-type organic solvent transporter K07323 mlaC; phospholipid transport system substrate-binding protein
D VF_0399 yrbB; predicted NTP-binding protein K07122 mlaB; phospholipid transport system transporter-binding protein
D VF_1986 pstS; phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VF_A0555 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VF_1610 pstS2; phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VF_1985 pstC; phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D VF_1611 pstC2; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D VF_1984 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D VF_1612 pstA2; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D VF_1983 pstB; phosphate transporter ATP-binding subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D VF_1613 pstB2; phosphate transport ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D VF_1532 general L-amino acid-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein
D VF_1533 aapQ; predicted amino-acid transporter permease K09970 aapQ; general L-amino acid transport system permease protein
D VF_1534 aapM; predicted amino-acid transporter permease K09971 aapM; general L-amino acid transport system permease protein
D VF_1535 aapP; predicted amino-acid transporter ATPase K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D VF_1587 argT; lysine/arginine/ornithine transporter subunit K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D VF_1585 hisM; histidine/lysine/arginine/ornithine transporter subunit K10023 aotM; arginine/ornithine transport system permease protein
D VF_1586 hisQ; histidine/lysine/arginine/ornithine transporter subunit K10024 aotQ; arginine/ornithine transport system permease protein
D VF_1588 hisP; histidine/lysine/arginine/ornithine transporter subunit K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D VF_0684 metQ; DL-methionine transporter subunit K02073 metQ; D-methionine transport system substrate-binding protein
D VF_0685 metI; DL-methionine transporter subunit K02072 metI; D-methionine transport system permease protein
D VF_0686 metN; DL-methionine transporter subunit K02071 metN; D-methionine transport system ATP-binding protein
D VF_0008 fliY; cystine-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D VF_0007 yecS; cystine transport system permease protein K16962 yxeN; putative S-methylcysteine transport system permease protein
D VF_0006 yecC; cystine transport ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D VF_1093 glutamate-gated potassium channel K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D VF_A0391 ABC transporter amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D VF_A0390 amino acid ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D VF_A0392 glnP; amino acid ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D VF_A0393 amino acid transport ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D VF_1597 oppA; oligopeptide-binding protein OppA K15580 oppA; oligopeptide transport system substrate-binding protein
D VF_1596 oppB; oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D VF_1595 oppC; oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D VF_1594 oppD; oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D VF_1593 oppF; oligopeptide transporter ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D VF_A0309 sapA; peptide transport protein SapA K19226 sapA; cationic peptide transport system substrate-binding protein
D VF_A0308 sapB; peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D VF_A0307 sapC; peptide transport system permease protein SapC K19228 sapC; cationic peptide transport system permease protein
D VF_A0306 sapD; peptide transport system ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D VF_A0305 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D VF_2139 chitooligosaccharide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VF_2518 dppA; dipeptide-binding protein DppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VF_0681 oligopeptide-binding protein OppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VF_2517 dppB; dipeptide transport system permease protein DppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VF_0680 oligopeptide transport system permease protein OppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VF_2140 chitooligosaccharide transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VF_2141 chitooligosaccharide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VF_2516 dppC; dipeptide transport system permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VF_0679 oligopeptide transport system permease protein OppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VF_2142 chitooligosaccharide transport ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VF_2519 dppD; dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VF_A0200 chitooligosaccharide transport ATP-binding protein oppF K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VF_0691 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VF_2143 chitooligosaccharide transport ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VF_0677 putative dipeptide ABC transporter K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VF_A0199 chitooligosaccharide transport ATP-binding protein oppD K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VF_0692 oligopeptide transport ATP-binding protein OppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VF_0690 oligopeptide-binding protein OppA K13893 yejA; microcin C transport system substrate-binding protein
D VF_0688 yejB; predicted oligopeptide transporter subunit K13894 yejB; microcin C transport system permease protein
D VF_0689 yejE; predicted oligopeptide transporter subunit K13895 yejE; microcin C transport system permease protein
D VF_A0159 fhuD; iron-hydroxamate transporter subunit K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D VF_A0782 ferrichrome-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D VF_A0160 fhuB; fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components K23228 fhuB; ferric hydroxamate transport system permease protein
D VF_A0781 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D VF_A0158 fhuC; iron-hydroxamate transporter subunit K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D VF_A0783 ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D VF_1222 hmuT; hemin-binding periplasmic protein HmuT precursor K25132 hmuT; heme transport system substrate-binding protein
D VF_1221 hmuU; hemin transport system permease protein HmuU K25133 hmuU; heme transport system permease protein
D VF_1220 hmuV; Hemin import ATP-binding protein HmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D VF_A0827 vctP; Ferric anguibactin-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D VF_A0825 ferric anguibactin transport system permease protein FatC K25283 yclO; iron-siderophore transport system permease protein
D VF_A0826 vctD; ferric anguibactin transport system permease protein FatD K25284 yclN; iron-siderophore transport system permease protein
D VF_A0824 vctC; ferric anguibactin transport ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D VF_A0973 ABC transporter, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein
D VF_A0972 fecD; KpLE2 phage-like element; iron-dicitrate transporter subunit K25027 btuC; cobalamin transport system permease protein
D VF_A0971 fecE; vitamin B12 transport ATP-binding protein BtuD K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D VF_0830 znuA; zinc transporter subunit: periplasmic-binding component of ABC superfamily K09815 znuA; zinc transport system substrate-binding protein
D VF_2366 znuA2; high-affinity zinc uptake system protein ZnuA2 K09815 znuA; zinc transport system substrate-binding protein
D VF_0828 znuB; zinc transporter subunit: membrane component of ABC superfamily K09816 znuB; zinc transport system permease protein
D VF_2368 znuB2; high-affinity zinc uptake system membrane protein ZnuB2 K09816 znuB; zinc transport system permease protein
D VF_0829 znuC; zinc transporter subunit: ATP-binding component of ABC superfamily K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D VF_2367 znuC2; high-affinity zinc uptake system ATP-binding protein ZnuC2 K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D VF_1566 hypothetical protein K16924 mtsT; energy-coupling factor transport system substrate-specific component
D VF_1564 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D VF_1565 cobalt transport ATP-binding protein CbiO K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D VF_0414 yjgP; conserved inner membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D VF_0415 yjgQ; conserved inner membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D VF_0388 lptB; predicted transporter subunit: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D VF_A0462 lolC; outer membrane-specific lipoprotein transporter subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D VF_A0464 lolE; outer membrane-specific lipoprotein transporter subunit K09808 lolC_E; lipoprotein-releasing system permease protein
D VF_A0463 lolD; outer membrane-specific lipoprotein transporter subunit K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D VF_1821 ccmD; heme exporter protein D K02196 ccmD; heme exporter protein D
D VF_1822 ccmC; heme exporter subunit C K02195 ccmC; heme exporter protein C
D VF_1823 ccmB; heme exporter subunit B K02194 ccmB; heme exporter protein B
D VF_1824 ccmA; heme exporter subunit A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D VF_2451 ftsX; predicted transporter subunit: membrane component of ABC superfamily K09811 ftsX; cell division transport system permease protein
D VF_2452 ftsE; predicted transporter subunit: ATP-binding component of ABC superfamily K09812 ftsE; cell division transport system ATP-binding protein
D VF_A0913 membrane protein, putative K01992 ABC-2.P; ABC-2 type transport system permease protein
D VF_2171 yadH; predicted transporter subunit: membrane component of ABC superfamily K01992 ABC-2.P; ABC-2 type transport system permease protein
D VF_A0590 daunorubicin resistance transmembrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D VF_A0589 integral membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D VF_A0112 ybhS; predicted transporter subunit: membrane component of ABC superfamily K01992 ABC-2.P; ABC-2 type transport system permease protein
D VF_A0912 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D VF_A0111 ybhF; fused predicted transporter subunits of ABC superfamily: ATP-binding components K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D VF_2172 yadG; predicted transporter subunit: ATP-binding component of ABC superfamily K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D VF_0326 permease K02004 ABC.CD.P; putative ABC transport system permease protein
D VF_1163 export ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D VF_1164 export ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D VF_0885 ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D VF_A1042 ybbP; predicted inner membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D VF_A0736 ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D VF_0327 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VF_1165 macB; fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VF_0884 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VF_A1043 ybbA; predicted transporter subunit: ATP-binding component of ABC superfamily K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VF_A0737 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VF_1107 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VF_1052 transporter, divalent anion:sodium symporter family K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D VF_0461 sodium-dependent phosphate transporter K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter)
D VF_1415 mdtK; multidrug efflux system transporter K26939 norM; MATE family, multidrug efflux pump
D VF_1332 sodium-driven multidrug efflux pump K26939 norM; MATE family, multidrug efflux pump
D VF_2440 dinF; DNA-damage-inducible SOS response protein K26937 dinF; MATE family, multidrug efflux pump
D VF_1266 yeeO; predicted multidrug efflux system K26937 dinF; MATE family, multidrug efflux pump
D VF_0203 Na(+) driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D VF_1452 sodium-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D VF_A0916 sodium-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D VF_A0028 setC; predicted sugar efflux system K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D VF_A0611 yhjX; predicted transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D VF_2380 hcaT; predicted 3-phenylpropionic transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D VF_A0042 uhpT; hexose phosphate transporter K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D VF_0072 glpT; sn-glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D VF_A0039 uhpC; membrane protein regulates uhpT expression K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D VF_2358 transporter, MFS superfamily K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter
D VF_0720 ampG; muropeptide transporter AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D VF_0041 mdtL; multidrug efflux system protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D VF_0881 bcr; bicyclomycin/multidrug efflux system K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D VF_A0153 emrD; multidrug efflux system protein K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D VF_A1104 multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D VF_0879 emrB; multidrug efflux system protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D VF_A0977 ynfM; predicted transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D VF_A0957 yihN; predicted transporter K26602 yihN; MFS transporter, GlpU family, inner membrane protein
D VF_0980 ycaD; predicted transporter K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D VF_1895 ptsI; PEP-protein phosphotransferase of PTS system (enzyme I) K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D VF_0457 ptsP; fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D VF_1894 ptsH; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) K02784 ptsH; phosphocarrier protein HPr
D VF_0383 phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
D VF_A0942 fruB; fused fructose-specific PTS enzymes: IIA component/HPr component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D VF_1897 crr; glucose-specific enzyme IIA component of PTS K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VF_1732 ptsG; fused glucose-specific PTS enzymes: IIB component/IIC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D VF_A0786 PTS system, glucose-specific II BC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D VF_0808 nagE; fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB components K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VF_A0438 nagE2; fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB components K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VF_1719 malX; fused maltose and glucose-specific PTS enzymes: IIB component/IIC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VF_1115 murP; fused predicted PTS enzymes: IIB component/IIC component K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D VF_A0369 PTS system, fructose-like-1 IIA component K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D VF_A0940 fruA; fused fructose-specific PTS enzymes: IIBcomponent/IIC components K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D VF_A0712 hypothetical protein K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D VF_A0713 frwC; predicted enzyme IIC component of PTS K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D VF_A0370 PTS system, fructose-like enzyme IIC component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D VF_A0060 cmtB; predicted mannitol-specific enzyme IIA component of PTS K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D VF_A0061 cmtA; predicted fused mannitol-specific PTS enzymes: IIB component/IIC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D VF_0607 PTS system, cellobiose-utilization IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D VF_0604 PTS system, cellobiose-utilization IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D VF_0603 PTS system, cellobiose-utilization IIC component K02761 celB; cellobiose PTS system EIIC component
D VF_A1000 PTS system, N-acetylgalactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D VF_A1003 agaV; N-acetylgalactosamine-specific enzyme IIB component of PTS K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D VF_A1002 agaC; PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D VF_A1001 agaD; N-acetylgalactosamine-specific enzyme IID component of PTS K02747 agaE; N-acetylgalactosamine PTS system EIID component
D VF_A0130 PTS system, 3-keto-L-gulonate specific IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D VF_A0128 PTS system, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D VF_A0129 ulaA; L-ascorbate-specific enzyme IIC component of PTS K03475 ulaA; ascorbate PTS system EIIC component
D VF_A0711 PTS system, IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D VF_0385 ptsN; sugar-specific enzyme IIA component of PTS K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D VF_1479 aqpZ; aquaporin K06188 aqpZ; aquaporin Z
D VF_A0235 glpF; glycerol uptake facilitator protein GlpF K02440 glpF; glycerol uptake facilitator
D VF_0917 cation transporter, VIC family K10716 kch; voltage-gated potassium channel
D VF_2237 potassium channel protein K10716 kch; voltage-gated potassium channel
D VF_2152 amtB; ammonium transporter K03320 amt; ammonium transporter, Amt family
D VF_A0821 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D VF_2216 sspA; stringent starvation protein A K03599 sspA; stringent starvation protein A
D VF_A0682 transporter K07114 yfbK; Ca-activated chloride channel homolog
D VF_1422 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D VF_1421 transporter K07114 yfbK; Ca-activated chloride channel homolog
D VF_A0681 hypothetical membrane spanning protein K07114 yfbK; Ca-activated chloride channel homolog
D VF_A1192 conserved hypothetical protein containing von Willebrand factor type A domain K07114 yfbK; Ca-activated chloride channel homolog
D VF_1536 yccA; inner membrane protein K19416 yccA; modulator of FtsH protease
D VF_A0813 focA; formate transporter K06212 focA; formate transporter
D VF_A0386 formate/nitrite transporter family protein K06212 focA; formate transporter
D VF_0774 nitrite transporter K21993 fdhC; formate transporter
D VF_2108 mscS; mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D VF_1455 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D VF_A1107 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D VF_A0405 ynaI; conserved inner membrane protein K16052 ynaI; MscS family membrane protein
D VF_A0372 ybdG; predicted mechanosensitive channel K16053 ybdG; miniconductance mechanosensitive channel
D VF_0382 magnesium transporter K06213 mgtE; magnesium transporter
D VF_A1047 magnesium transporter MgtE K06213 mgtE; magnesium transporter
D VF_2052 magnesium transporter MgtE K06213 mgtE; magnesium transporter
D VF_0714 motA1; flagellar motor protein MotA1 K02556 motA; chemotaxis protein MotA
D VF_A0186 motA2; flagellar motor protein MotA2 K02556 motA; chemotaxis protein MotA
D VF_0715 motB1; flagellar motor protein MotB1 K02557 motB; chemotaxis protein MotB
D VF_A0187 motB2; flagellar motor protein MotB2 K02557 motB; chemotaxis protein MotB
D VF_2317 motX; flagellar motor protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D VF_0926 motY; flagellar motor protein MotY K21218 motY; sodium-type flagellar protein MotY
D VF_A0779 TolQ protein K03561 exbB; biopolymer transport protein ExbB
D VF_1224 exbB1; TonB system transport protein ExbB1 K03561 exbB; biopolymer transport protein ExbB
D VF_A0778 TolQ protein K03561 exbB; biopolymer transport protein ExbB
D VF_A0193 TolQ protein K03561 exbB; biopolymer transport protein ExbB
D VF_A0194 TolQ protein K03561 exbB; biopolymer transport protein ExbB
D VF_A0195 TolR protein K03559 exbD; biopolymer transport protein ExbD
D VF_A0777 TonB system transport protein ExbD2 K03559 exbD; biopolymer transport protein ExbD
D VF_0958 tolQ; membrane spanning protein in TolA-TolQ-TolR complex K03562 tolQ; biopolymer transport protein TolQ
D VF_0959 tolR; membrane spanning protein in TolA-TolQ-TolR complex K03560 tolR; biopolymer transport protein TolR
D VF_A0914 ytfL; predicted inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VF_2398 CBS-domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VF_0546 corB; magnesium and cobalt efflux protein CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VF_0475 ompU; Outer membrane protein U porin OmpU K08720 ompU; outer membrane protein OmpU
D VF_0609 outer membrane protein S K02024 lamB; maltoporin
D VF_A1100 ompA; outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family
D VF_1813 long-chain fatty acid transport protein precursor K06076 fadL; long-chain fatty acid transport protein
D VF_1543 long-chain fatty acid transport protein precursor K06076 fadL; long-chain fatty acid transport protein
D VF_1812 long-chain fatty acid transport protein precursor K06076 fadL; long-chain fatty acid transport protein
D VF_2435 btuB; vitamin B12/cobalamin outer membrane transporter K16092 btuB; vitamin B12 transporter
D VF_1234 hutA; heme transport protein HutA K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D VF_A0332 TonB system receptor, putative K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VF_A0059 TonB-dependent outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VF_A0191 FhuE receptor precursor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VF_A0784 fhuA; ferrichrome outer membrane transporter K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VF_A0165 iutA; ferric aerobactin receptor precursor IutA K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VF_2233 tolC; transport channel K12340 tolC; outer membrane protein
D VF_A1163 outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system
D VF_0350 periplasmic protein involved in polysaccharide export K20988 vpsN; polysaccharide biosynthesis/export protein VpsN
D VF_0162 gfcE; predicted exopolysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D VF_1954 yaeT; beta barrel component of outer membrane protein assembly complex (YaeT, Omp85) K07277 SAM50; outer membrane protein insertion porin family
D VF_0632 yfgL; lipoprotein component of outer membrane protein assembly complex K17713 bamB; outer membrane protein assembly factor BamB
D VF_1917 nlpB; lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D VF_0563 yfiO; lipoprotein component of outer membrane protein assembly complex K05807 bamD; outer membrane protein assembly factor BamD
D VF_1999 small protein A K06186 bamE; outer membrane protein assembly factor BamE
D VF_0332 ytfM; predicted outer membrane protein and surface antigen K07278 tamA; translocation and assembly module TamA
D VF_0333 ytfN; conserved protein K09800 tamB; translocation and assembly module TamB
D VF_A1008 hypothetical protein K22110 kdgM; oligogalacturonate-specific porin family protein
D VF_0389 lptA; predicted transporter subunit: periplasmic-binding component of ABC superfamily K09774 lptA; lipopolysaccharide export system protein LptA
D VF_0390 probable exported protein K11719 lptC; lipopolysaccharide export system protein LptC
D VF_0289 imp; exported protein required for envelope (LPS) biosynthesis and integrity K04744 lptD; LPS-assembly protein
D VF_0752 rlpB; lipoprotein component of outer membrane LPS assembly complex K03643 lptE; LPS-assembly lipoprotein
D VF_A0881 cellulose synthase operon C protein K20543 bcsC; cellulose synthase operon protein C
D VF_0351 transcriptional regulator, TetR family K20920 vpsM; polysaccharide biosynthesis protein VpsM
D VF_0756 ybeX; predicteed ion transport K06189 corC; hemolysin (HlyC) family protein
D VF_1483 murein hydrolase exporter K06518 cidA; holin-like protein
D VF_2058 cadB; predicted lysine/cadaverine transporter K03757 cadB; cadaverine:lysine antiporter
D VF_2341 fieF; zinc transporter K13283 fieF; ferrous-iron efflux pump FieF
D VF_A0445 cusA; copper/silver efflux system, membrane component K07787 cusA; copper/silver efflux system protein
D VF_2524 acriflavin resistance plasma membrane protein K18138 acrB; multidrug efflux pump
D VF_A0907 acriflavin resistance plasma membrane protein K18138 acrB; multidrug efflux pump
D VF_A1149 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D VF_2132 acriflavin resistance plasma membrane protein K18989 vexF; multidrug efflux pump
D VF_0584 emrE; DLP12 prophage; multidrug resistance protein K03297 emrE; small multidrug resistance pump
D VF_A0262 quaternary ammonium compound-resistance protein K03297 emrE; small multidrug resistance pump
D VF_0069 rarD; predicted chloramphenical resistance permease K05786 rarD; chloramphenicol-sensitive protein RarD
D VF_0924 transport protein K07084 yuiF; putative amino acid transporter
D VF_2156 gntP; fructuronate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D VF_2354 dcuA; C4-dicarboxylate antiporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D VF_1546 anaerobic C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D VF_1088 anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D VF_2064 dcuB; C4-dicarboxylate antiporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D VF_0393 yrbG; predicted calcium/sodium:proton antiporter K07301 yrbG; cation:H+ antiporter
D VF_A0829 putP; proline:sodium symporter K11928 putP; sodium/proline symporter
D VF_2377 hypothetical protein K14393 actP; cation/acetate symporter
D VF_A0803 sstT; sodium:serine/threonine symporter K07862 sstT; serine/threonine transporter
D VF_A0482 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D VF_A0507 gltS; glutamate transporter K03312 gltS; glutamate:Na+ symporter, ESS family
D VF_0887 nhaA; sodium-proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D VF_1634 nhaB; sodium:proton antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family
D VF_1254 Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family
D VF_1646 malate-2-proton/lactate-sodium antiporter K03315 nhaC; Na+:H+ antiporter, NhaC family
D VF_1630 sodium:proton antiporter K18218 tet35; tetracycline resistance efflux pump
D VF_0336 yjcE; predicted cation/proton antiporter K03316 nhaP; Na+:H+ antiporter
D VF_0220 kefB; potassium:proton antiporter K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D VF_A0260 glutathione-regulated potassium-efflux system protein KefC K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D VF_0219 kefG; component of potassium effux complex with KefB K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D VF_A0261 modulator of glutathione-dependent potassium efflux system K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D VF_2547 trkH2; Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D VF_0027 trkH; potassium transporter K03498 trkH; trk/ktr system potassium uptake protein
D VF_A0404 potassium uptake protein KtrB K03498 trkH; trk/ktr system potassium uptake protein
D VF_A0403 potassium uptake protein KtrA K03499 trkA; trk/ktr system potassium uptake protein
D VF_2546 trkA; NAD-binding component of TrK potassium transporter K03499 trkA; trk/ktr system potassium uptake protein
D VF_0532 codB; cytosine transporter K10974 codB; cytosine permease
D VF_1926 uraA; uracil transporter K02824 uraA; uracil permease
D VF_0116 yicE; predicted transporter K16345 xanP; xanthine permease XanP
D VF_0737 yieG; predicted inner membrane protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D VF_A0093 ygfQ; predicted transporter K06901 pbuG; adenine/guanine/hypoxanthine permease
D VF_1197 tyrP; tyrosine transporter K03834 tyrP; tyrosine-specific transport protein
D VF_1171 tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D VF_1177 sdaC; predicted serine transporter K03837 sdaC; serine transporter
D VF_0643 serine transporter K26604 cyuP; cysteine uptake transport protein
D VF_1798 clcA; chloride channel, voltage-gated K03281 clcA; chloride channel protein, CIC family
D VF_0031 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D VF_0573 chromate transport protein K07240 chrA; chromate transporter
D VF_2173 ychM; predicted transporter K03321 TC.SULP; sulfate permease, SulP family
D VF_A1052 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D VF_1749 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D VF_A0858 arsenical-resistance protein ACR3 K03325 ACR3; arsenite transporter
D VF_1724 dcuC; anaerobic C4-dicarboxylate transport K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D VF_1061 anaerobic C4-dicarboxylate transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D VF_1508 dcuD; predicted transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D VF_0465 yceN; predicted inner membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D VF_A1064 transporter K13936 mdcF; malonate transporter and related proteins
D VF_A0772 homogentisate export protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D VF_1338 rhtB; neutral amino-acid efflux system K05834 rhtB; homoserine/homoserine lactone efflux protein
D VF_A0938 threonine efflux protein K05835 rhtC; threonine efflux protein
D VF_A0638 hypothetical protein K05835 rhtC; threonine efflux protein
D VF_1921 yfgO; predicted inner membrane protein K03548 perM; putative permease
D VF_0073 yhhQ; conserved inner membrane protein K09125 yhhQ; queuosine precursor transporter
D VF_2375 ychE; predicted inner membrane protein K05595 marC; multiple antibiotic resistance protein
D VF_2456 multiple antibiotic resistance protein MarC K05595 marC; multiple antibiotic resistance protein
D VF_2202 ftsW; integral membrane protein involved in stabilizing FtsZ ring during cell division K03588 ftsW; cell division protein FtsW
D VF_A0964 integral membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D VF_A0995 high-affinity iron permease K07243 FTR; high-affinity iron transporter
D VF_1225 tonB1; TonB1 protein K03832 tonB; periplasmic protein TonB
D VF_A0196 TonB protein K03832 tonB; periplasmic protein TonB
D VF_A0776 TonB protein K03832 tonB; periplasmic protein TonB
D VF_0963 pal; peptidoglycan-associated outer membrane lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D VF_0960 tolA; membrane anchored protein in TolA-TolQ-TolR complex K03646 tolA; colicin import membrane protein
D VF_0962 tolB; periplasmic protein TolB K03641 tolB; TolB protein
D VF_0540 oadB; oxaloacetate decarboxylase beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D VF_0539 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D VF_2592 oadC; oxaloacetate decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D VF_2494 thiol:disulfide interchange protein DsbD K08344 scsB; suppressor for copper-sensitivity B
D VF_A0082 dmsA; dimethyl sulfoxide reductase, anaerobic, subunit A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D VF_A0081 ynfG; oxidoreductase, Fe-S subunit K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D VF_A0080 dmsC; dimethyl sulfoxide reductase, anaerobic, subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D VF_A0299 torA; trimethylamine N-oxide (TMAO) reductase I, catalytic subunit K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VF_A0298 torC; trimethylamine N-oxide reductase, cytochrome c-type subunit K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D VF_1571 torD; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I K03533 torD; TorA specific chaperone
D VF_A0189 torY; TMAO reductase III (TorYZ), cytochrome c-type subunit K07821 torY; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorY
D VF_A0188 torZ; TMAO reductase III (TorYZ), TorZ subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VF_A0990 trimethylamine-N-oxide reductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VF_A1103 multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D VF_0878 emrK; EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component K03543 emrA; membrane fusion protein, multidrug efflux system
D VF_A0444 cusB; copper/silver efflux system, membrane fusion protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D VF_A1168 rtxD; putative RTX transport membrane fusion protein RtxD K12542 lapC; membrane fusion protein, adhesin transport system
D VF_A1152 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_2523 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_1582 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_2133 periplasmic component of efflux system K18990 vexE; membrane fusion protein, multidrug efflux system
D VF_0349 chain length regulator, exopolysaccharide biosynthesis protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D VF_A1034 sypO; chain length regulator (capsular polysaccharide biosynthesis) K25590 epsF; protein tyrosine kinase modulator
D VF_0165 wzc; protein-tyrosine kinase, chain length regulator in capsular polysaccharide biosynthesis K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D VF_A0529 pnuC; predicted nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D VF_0833 feoA; ferrous ion transport protein A K04758 feoA; ferrous iron transport protein A
D VF_0834 feoB; fused ferrous iron transporter, protein B: GTP-binding protein/membrane protein K04759 feoB; ferrous iron transport protein B
D VF_0835 hypothetical protein K10123 feoC; putative ferrous iron transport protein C
D VF_A0673 sbmA; predicted transporter SbmA K17938 sbmA; peptide/bleomycin uptake transporter
D VF_0085 uspB; universal stress (ethanol tolerance) protein B K06144 uspB; universal stress protein B
D VF_1819 ccmF; heme lyase, CcmF subunit K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D VF_1550 nrfE; heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D VF_1803 magnesium transport ATPase protein C K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D VF_1562 hypothetical protein K07274 mipA; MipA family protein
D VF_1632 mipA; scaffolding protein for murein synthesizing machinery K07274 mipA; MipA family protein
C 02044 Secretion system [BR:vfi02044]
D VF_2233 tolC; transport channel K12340 tolC; outer membrane protein
D VF_A1165 rtxB; ATP-binding protein, putative RTX transport secretion component RtxB K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D VF_A1168 rtxD; putative RTX transport membrane fusion protein RtxD K12542 lapC; membrane fusion protein, adhesin transport system
D VF_A1163 outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system
D VF_2243 gspA; general secretion pathway protein A K02450 gspA; general secretion pathway protein A
D VF_2242 general secretion pathway protein B K02451 gspB; general secretion pathway protein B
D VF_2475 gspC; general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D VF_2474 gspD; general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D VF_2473 gspE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D VF_2472 gspF; general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D VF_2471 gspG; general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D VF_2470 gspH; general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D VF_2469 gspI; general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D VF_2468 gspJ; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D VF_2467 gspK; general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D VF_2466 gspL; general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D VF_2465 gspM; cholera toxin secretion protein EpsM K02462 gspM; general secretion pathway protein M
D VF_2464 gspN; general secretion pathway protein N K02463 gspN; general secretion pathway protein N
D VF_2188 pilD; type 4 prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D VF_2185 pilA; pilin subunit PilA K02650 pilA; type IV pilus assembly protein PilA
D VF_2186 pilB; pilus assembly protein PilB K02652 pilB; type IV pilus assembly protein PilB
D VF_2187 pilC; pilus assembly protein PilC K02653 pilC; type IV pilus assembly protein PilC
D VF_0572 pili subunit PilA1 K02655 pilE; type IV pilus assembly protein PilE
D VF_0627 type IV pilus biogenesis/stability protein K02656 pilF; type IV pilus assembly protein PilF
D VF_2297 pilM; pili assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D VF_2296 pilN; pili assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D VF_2295 pilO; pili assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D VF_2294 pilP; pili assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D VF_2293 pilQ; pili ecretion protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D VF_0431 pilT; predicted transporter K02669 pilT; twitching motility protein PilT
D VF_0432 pilU; pili retraction protein PilU K02670 pilU; twitching motility protein PilU
D VF_0568 hypothetical protein K02671 pilV; type IV pilus assembly protein PilV
D VF_0570 hypothetical protein K02672 pilW; type IV pilus assembly protein PilW
D VF_0571 type IV pilin, putative K08084 fimT; type IV fimbrial biogenesis protein FimT
D VF_1697 latent nuclear antigen K08086 fimV; pilus assembly protein FimV
D VF_0511 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VF_A1179 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VF_0512 flp1; Flp pilus assembly protein CpaB family K02279 cpaB; pilus assembly protein CpaB
D VF_A0219 tungstate-binding protein precursor K02279 cpaB; pilus assembly protein CpaB
D VF_0513 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VF_A0220 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VF_0515 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VF_A0222 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VF_0516 tadA1; putative type IV secretion NTPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VF_A0223 tadA2; putative type IV secretion NTPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VF_A0224 tadB2; TadB-like protein involved in pilus formation and/or protein secretion K12510 tadB; tight adherence protein B
D VF_0517 tadB1; TadB-like protein involved in pilus formation and/or protein secretion K12510 tadB; tight adherence protein B
D VF_0518 tadC1; bipartite nuclear localization signal containing protein K12511 tadC; tight adherence protein C
D VF_A0225 tadC2; bipartite nuclear localization signal containing protein K12511 tadC; tight adherence protein C
D VF_0519 tadD1; secretory protein containing TPR-repeats K12512 tadD; tight adherence protein D
D VF_A0226 tadD2; secretory protein containing TPR-repeats K12512 tadD; tight adherence protein D
D VF_A0227 tadE2; TadE-like protein K12513 tadE; tight adherence protein E
D VF_A0228 tadF2; ATP/GTP-binding site motif A (P-loop) surface protein, TadF-like protein K12514 tadF; tight adherence protein F
D VF_0521 tadF1; ATP/GTP-binding site motif A (P-loop) surface protein involved in fimbraea and/or secretion, TadF-like protein K12514 tadF; tight adherence protein F
D VF_0522 tadG1; TadG-like protein K12515 tadG; tight adherence protein G
D VF_A0229 tadG2; TadG-like protein K12515 tadG; tight adherence protein G
D VF_0510 fimbrial protein precursor K02651 flp; pilus assembly protein Flp/PilA
D VF_A0218 flp2; fimbrial protein precursor Flp1 K02651 flp; pilus assembly protein Flp/PilA
D VF_A0875 tcpA; toxin coregulated pilin subunit precursor TcpA K10930 tcpA; toxin coregulated pilin
D VF_A0874 tcpB; toxin coregulated pilus biosynthesis protein TcpB K10931 tcpB; toxin coregulated pilus biosynthesis protein B
D VF_A0872 tcpC; toxin coregulated pilus outer membrane protein TcpC K10932 tcpC; toxin coregulated pilus biosynthesis outer membrane protein C
D VF_A0870 tcpD; toxin coregulated pilus biosynthesis protein TcpD K10933 tcpD; toxin coregulated pilus biosynthesis protein D
D VF_A0867 tcpE; toxin coregulated pilus biosynthesis protein TcpE K10934 tcpE; toxin coregulated pilus biosynthesis protein E
D VF_A0873 tcpQ; toxin coregulated pilus biosynthesis protein TcpY/TcpQ K10962 tcpQ; toxin coregulated pilus biosynthesis protein Q
D VF_A0869 tcpS; toxin coregulated pilus biosynthesis protein TcpS K10964 tcpS; toxin coregulated pilus biosynthesis protein S
D VF_A0868 tcpT; toxin coregulated pilus biosynthesis protein TcpT K10965 tcpT; toxin coregulated pilus biosynthesis protein T
D VF_0366 mshA; MSHA pilin protein MshA K10924 mshA; MSHA pilin protein MshA
D VF_0365 mshB; MSHA pilin protein MshB K10925 mshB; MSHA pilin protein MshB
D VF_A0079 mshC2; MSHA pilin protein MshC K10926 mshC; MSHA pilin protein MshC
D VF_0367 mshC; MSHA pilin protein MshC K10926 mshC; MSHA pilin protein MshC
D VF_A0078 mshD2; MshD protein K10927 mshD; MSHA pilin protein MshD
D VF_0368 mshD; MshD protein K10927 mshD; MSHA pilin protein MshD
D VF_0362 mshE; MSHA biogenesis protein MshE K12276 mshE; MSHA biogenesis protein MshE
D VF_0364 hypothetical protein K12277 mshF; MSHA biogenesis protein MshF
D VF_0363 mshG; MSHA biogenesis protein MshG K12278 mshG; MSHA biogenesis protein MshG
D VF_0356 mshI; MSHA biogenesis protein MshI K12279 mshI; MSHA biogenesis protein MshI
D VF_0357 mshJ; MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ
D VF_0358 hypothetical protein K12281 mshK; MSHA biogenesis protein MshK
D VF_0359 mshL; MSHA biogenesis protein MshL K12282 mshL; MSHA biogenesis protein MshL
D VF_0360 mshM; MSHA biogenesis protein MshM K12283 mshM; MSHA biogenesis protein MshM
D VF_0361 mshN; MSHA biogenesis protein MshN K12284 mshN; MSHA biogenesis protein MshN
D VF_0369 mshO; MSHA pilus assembly protein MshO K12285 mshO; MSHA biogenesis protein MshO
D VF_A0077 mshO2; MshO protein K12285 mshO; MSHA biogenesis protein MshO
D VF_A0076 mshP2; MshP protein K12286 mshP; MSHA biogenesis protein MshP
D VF_0370 mshP; MSHA biogenesis protein MshP K12286 mshP; MSHA biogenesis protein MshP
D VF_A0075 mshQ2; MshQ protein K12287 mshQ; MSHA biogenesis protein MshQ
D VF_0371 mshQ; MshQ protein K12287 mshQ; MSHA biogenesis protein MshQ
D VF_0428 yggT; predicted inner membrane protein K02221 yggT; YggT family protein
D VF_0801 comE; ComE-related protein K02237 comEA; competence protein ComEA
D VF_A0917 deoxycytidylate deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D VF_A0423 ycaI; putative recombination protein K02238 comEC; competence protein ComEC
D VF_1837 flhA; flagellar export pore protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D VF_1839 flhB; flagellar export pore protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D VF_1852 fliF; flagellar M ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D VF_1850 fliH; flagellar assembly protein FliH, negative regulator of FliI K02411 fliH; flagellar assembly protein FliH
D VF_1849 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D VF_1844 fliN; flagellar motor switch component FliN K02417 fliN; flagellar motor switch protein FliN
D VF_1843 fliO; flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D VF_1842 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D VF_1841 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D VF_1840 fliR; flagellar export pore protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D VF_B0038 attachment mediating protein VirB2-like protein K03197 virB2; type IV secretion system protein VirB2
D VF_B0056 type IV secretion (pTiA6 VirB3) K03198 virB3; type IV secretion system protein VirB3
D VF_B0039 VirB4 ATPase K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D VF_B0054 attachment mediating protein VirB5-like protein K03200 virB5; type IV secretion system protein VirB5
D VF_B0055 channel protein VirB6 K03201 virB6; type IV secretion system protein VirB6
D VF_B0040 channel protein VirB8 K03203 virB8; type IV secretion system protein VirB8
D VF_B0041 channel protein VirB9 K03204 virB9; type IV secretion system protein VirB9
D VF_B0042 channel protein VirB10 K03195 virB10; type IV secretion system protein VirB10
D VF_B0043 VirB11 ATPase K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D VF_B0044 protein VirD4 K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D VF_0449 dsbC; protein disulfide isomerase II K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D VF_0993 icmF; secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D VF_0994 OmpA family protein K11892 impK; type VI secretion system protein ImpK
D VF_0995 conserved hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D VF_1000 quinoprotein dehydrogenase K11895 impH; type VI secretion system protein ImpH
D VF_1001 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D VF_1003 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D VF_1004 hypothetical cytosolic protein K11901 impB; type VI secretion system protein ImpB
D VF_A0954 hemolysin co-regulated protein K11903 hcp; type VI secretion system secreted protein Hcp
D VF_A0953 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VF_1229 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VF_1002 hypothetical protein K11905 K11905; type VI secretion system protein
D VF_0996 probable lipoprotein K11906 vasD; type VI secretion system protein VasD
D VF_0999 ATP-dependent protease subunit K11907 vasG; type VI secretion system protein VasG
D VF_1005 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ
D VF_0997 phospho-specific protein-protein interaction motif FHA K11894 impI; type VI secretion system protein ImpI
D VF_0998 transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VF_0991 protein phosphatase 2C K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16]
D VF_2409 csgB; minor curlin subunit, nucleator CsgB K04335 csgB; minor curlin subunit
D VF_2407 csgE; curli production assembly/transport component CsgE K04337 csgE; curli production assembly/transport component CsgE
D VF_2406 csgF; curli production assembly/transport component CsgF K04338 csgF; curli production assembly/transport component CsgF
D VF_2405 csgG; curli production assembly/transport outer membrane lipoprotein component CsgG K06214 csgG; curli production assembly/transport component CsgG
D VF_2193 secA; preprotein translocase subunit, ATPase K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D VF_2349 secB; protein export chaperone K03071 secB; preprotein translocase subunit SecB
D VF_1967 secD; SecYEG protein translocase auxillary subunit K03072 secD; preprotein translocase subunit SecD
D VF_0875 secD2; protein translocase subunit SecD-like protein K03072 secD; preprotein translocase subunit SecD
D VF_2422 secE; preprotein translocase membrane subunit K03073 secE; preprotein translocase subunit SecE
D VF_1966 secF; SecYEG protein translocase auxillary subunit K03074 secF; preprotein translocase subunit SecF
D VF_0874 secF2; protein translocase subunit SecF-like protein K03074 secF; preprotein translocase subunit SecF
D VF_0483 secG; preprotein translocase membrane subunit K03075 secG; preprotein translocase subunit SecG
D VF_0257 secY; preprotein translocase membrane subunit K03076 secY; preprotein translocase subunit SecY
D VF_0548 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D VF_2453 ftsY; fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein K03110 ftsY; fused signal recognition particle receptor
D VF_1968 yajC; SecYEG protein translocase auxillary subunit K03210 yajC; preprotein translocase subunit YajC
D VF_0003 yidC; cytoplasmic insertase into membrane protein, Sec system K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VF_0049 tatA; TatABCE protein translocation system subunit K03116 tatA; sec-independent protein translocase protein TatA
D VF_0050 tatB; TatABCE protein translocation system subunit K03117 tatB; sec-independent protein translocase protein TatB
D VF_0051 tatC; TatABCE protein translocation system subunit K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:vfi02042]
D VF_A0576 zot; zona occludens toxin K10954 zot; zona occludens toxin
D VF_A0914 ytfL; predicted inner membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VF_2398 CBS-domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VF_0546 corB; magnesium and cobalt efflux protein CorB K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VF_A0577 ace; enterotoxin K10952 ace; accessory cholera enterotoxin
D VF_2548 yqfA; predicted oxidoreductase, inner membrane subunit K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:vfi02022]
D VF_1987 phoR; sensory histidine kinase in two-component regulatory system with PhoB K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D VF_1988 phoB; DNA-binding response regulator in two-component regulatory system with PhoR K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D VF_0525 phoQ1; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0524 phoQ2; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0526 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D VF_0115 envZ; EnvZ osmolarity sensory histidine kinase in two-component regulatory system with OmpR K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D VF_0114 ompR; OmpR DNA-binding osmolarity response regulator in two-component regulatory system with EnvZ K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D VF_2344 cpxA; sensory histidine kinase in two-component regulatory system with CpxR K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D VF_2343 cpxR; DNA-binding response regulator in two-component regulatory system with CpxA K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D VF_A0178 cusS; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D VF_A0179 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D VF_1619 torS; hybrid sensory histidine kinase in two-component regulatory system with TorR K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D VF_1570 torR; DNA-binding response regulator in two-component regulatory system with TorS K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D VF_2122 arcB; hybrid sensory histidine kinase in two-component regulatory system with ArcA K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D VF_2120 arcA; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D VF_A0436 putative transcriptional regulatory protein K02483 K02483; two-component system, OmpR family, response regulator
D VF_1396 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D VF_1908 narQ; sensory histidine kinase in two-component regulatory system with NarP (NarL) K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D VF_1909 narP; DNA-binding response regulator in two-component regulatory system with NarQ K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D VF_A0040 uhpB; sensory histidine kinase in two-component regulatory sytem with UhpA K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D VF_A0041 uhpA; DNA-binding response regulator in two-component regulatory system wtih UhpB K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D VF_2082 gacS; hybrid sensory histidine kinase, in two-component regulatory system with GacA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D VF_1627 gacA; DNA-binding response regulator in two-component regulatory system with GacS K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D VF_1149 yehU; predicted sensory kinase in two-component system with YehT K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D VF_1148 yehT; predicted response regulator in two-component system with YehU K02477 K02477; two-component system, LytTR family, response regulator
D VF_0096 ntrB; nitrogen regulatory sensory histidine kinase in two-component regulatory system with NtrC K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D VF_0095 ntrC; fused DNA-binding response regulator in two-component regulatory system with NtrB: nitrogen regulatory response regulator/sigma54 interaction protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D VF_1400 sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D VF_1831 cheA; chemotactic sensory histidine kinase CheA, in two-component regulatory system with CheB and CheY K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VF_1833 cheY; chemotaxis regulator CheY, transmits signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VF_1054 ScrF protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VF_1830 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D VF_A0698 cheV3; CheW/CheY hybrid protein CheV3 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_1879 cheV1; CheW/CheY hybrid protein CheV1 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_A0802 cheV2; CheW/CheY hybrid protein CheV2 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_0708 luxQ; membrane-bound sensor histidine kinase LuxQ K10909 luxQ; two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-]
D VF_1036 ainR; putative autoinducer regulatory protein AinR K15850 luxN; two-component system, autoinducer 1 sensor kinase/phosphatase LuxN [EC:2.7.13.3 3.1.3.-]
D VF_0938 luxU; autoinducer phosphorelay protein LuxU K10911 luxU; two-component system, phosphorelay protein LuxU
D VF_A1026 sypG; sigma-54 dependent transcriptional regulator K10912 luxO; two-component system, repressor protein LuxO
D VF_0937 luxO; autoinducer repressor protein LuxO K10912 luxO; two-component system, repressor protein LuxO
D VF_A0102 two component sensor histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D VF_A0103 two component response regulator K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D VF_1855 flrB; sensory histidine kinase FlrB K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D VF_1854 flrC; two-component response regulator FlrC K10943 flrC; two-component system, response regulator FlrC
D VF_2138 chiS; chitin sensor histidine kinase ChiS K19694 chiS; two-component system, sensor histidine kinase ChiS
C 02035 Bacterial motility proteins [BR:vfi02035]
D VF_1831 cheA; chemotactic sensory histidine kinase CheA, in two-component regulatory system with CheB and CheY K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VF_1826 cheW; chemotaxis coupling protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D VF_1828 C-terminal CheW domain, putative chemotaxis coupling protein K03408 cheW; purine-binding chemotaxis protein CheW
D VF_0305 cheX; chemotaxis CheY-phosphatase CheX K03409 cheX; chemotaxis protein CheX
D VF_1878 cheR; chemotaxis regulator, protein-glutamate methyltransferase, CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D VF_1830 cheB; chemotaxis response regulator protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D VF_1833 cheY; chemotaxis regulator CheY, transmits signal to flagellar motor component K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VF_1054 ScrF protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VF_1832 cheZ; chemotaxis regulator CheZ, protein phosphatase for CheY K03414 cheZ; chemotaxis protein CheZ
D VF_A0698 cheV3; CheW/CheY hybrid protein CheV3 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_1879 cheV1; CheW/CheY hybrid protein CheV1 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_A0802 cheV2; CheW/CheY hybrid protein CheV2 K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VF_2236 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0389 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0448 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0447 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0528 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0677 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0325 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_0987 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1091 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1133 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_0777 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1618 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1369 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0169 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0170 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A1069 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A1072 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A1084 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0107 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1778 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1503 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_1789 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_2042 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_2161 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VF_A0092 methyl-accepting chemotaxis protein, putative aerotaxis receptor K03776 aer; aerotaxis receptor
D VF_A1071 methyl-accepting chemotaxis protein, putative aerotaxis receptor K03776 aer; aerotaxis receptor
D VF_1850 fliH; flagellar assembly protein FliH, negative regulator of FliI K02411 fliH; flagellar assembly protein FliH
D VF_1849 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D VF_1848 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D VF_1843 fliO; flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D VF_1842 fliP; flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D VF_1841 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D VF_1840 fliR; flagellar export pore protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D VF_1837 flhA; flagellar export pore protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D VF_1839 flhB; flagellar export pore protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D VF_1851 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D VF_A0185 hypothetical protein K02410 fliG; flagellar motor switch protein FliG
D VF_1845 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D VF_1844 fliN; flagellar motor switch component FliN K02417 fliN; flagellar motor switch protein FliN
D VF_1852 fliF; flagellar M ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D VF_1870 flgI; flagellar basal body P ring protein flgI K02394 flgI; flagellar P-ring protein FlgI
D VF_1880 flgA; flagellar P-ring chaperone FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D VF_1871 flgH; flagellar basal body L ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D VF_2446 fliL2; flagellar basal body-associated protein FliL2 K02415 fliL; flagellar protein FliL
D VF_1846 fliL1; flagellar basal body-associated protein FliL1 K02415 fliL; flagellar protein FliL
D VF_1853 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D VF_1847 fliK; flagellar hook length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D VF_1877 flgB; flagellar proximal rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D VF_1876 flgC; flagellar proximal rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D VF_1875 flgD; flagellar hook capping protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D VF_1873 flgF; flagellar proximal rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D VF_1872 flgG; flagellar distal rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D VF_1869 flgJ; flagellum-specific peptidoglycan hydrolase/muramidase, FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D VF_1874 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D VF_1868 flgK; flagellar hook-associated protein 1, FlgK K02396 flgK; flagellar hook-associated protein 1
D VF_1867 flgL; flagellar hook-associate protein 3, FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D VF_1882 flgN; chaperone FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D VF_1885 conserved hypothetical protein K24343 flgT; flagellar H-ring protein FlgT
D VF_1884 conserved hypothetical protein K24344 flgO; flagellar H-ring protein FlgO
D VF_1883 conserved hypothetical protein K09860 flgP; outer membrane protein FlgP
D VF_2317 motX; flagellar motor protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D VF_0926 motY; flagellar motor protein MotY K21218 motY; sodium-type flagellar protein MotY
D VF_2079 flaF; flagellin FlaF K02406 fliC; flagellin
D VF_1862 flaE; Flagellin FlaE K02406 fliC; flagellin
D VF_1863 flaD; Flagellin FlaD K02406 fliC; flagellin
D VF_1864 flaC; Flagellin FlaC K02406 fliC; flagellin
D VF_1865 flaB; Flagellin FlaB K02406 fliC; flagellin
D VF_1866 flaA; Flagellin FlaA K02406 fliC; flagellin
D VF_1860 fliD; flagellar hook-associated protein 2, FliD K02407 fliD; flagellar hook-associated protein 2
D VF_1858 fliS; flagellin chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D VF_1834 fliA; RNA polymerase, sigma-28 (sigma-F, FliA) factor K02405 fliA; RNA polymerase sigma factor FliA
D VF_0714 motA1; flagellar motor protein MotA1 K02556 motA; chemotaxis protein MotA
D VF_A0186 motA2; flagellar motor protein MotA2 K02556 motA; chemotaxis protein MotA
D VF_0715 motB1; flagellar motor protein MotB1 K02557 motB; chemotaxis protein MotB
D VF_A0187 motB2; flagellar motor protein MotB2 K02557 motB; chemotaxis protein MotB
D VF_1856 flrA; sigma-54-dependent transcriptional activator FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VF_1855 flrB; sensory histidine kinase FlrB K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D VF_1854 flrC; two-component response regulator FlrC K10943 flrC; two-component system, response regulator FlrC
D VF_1881 flgM; flagellar anti-sigma-28 factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D VF_1861 flaG; flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D VF_1859 flaI; flagellar protein FlaI K06604 flaI; flagellar protein FlaI
D VF_1836 flhF; flagellar regulator FlhF, GTP-binding protein K02404 flhF; flagellar biosynthesis protein FlhF
D VF_1835 flhG; flagellar synthesis regulator FlhG, conserved domain COG0455 K04562 flhG; flagellar biosynthesis protein FlhG
D VF_0431 pilT; predicted transporter K02669 pilT; twitching motility protein PilT
D VF_0432 pilU; pili retraction protein PilU K02670 pilU; twitching motility protein PilU
D VF_2185 pilA; pilin subunit PilA K02650 pilA; type IV pilus assembly protein PilA
D VF_2186 pilB; pilus assembly protein PilB K02652 pilB; type IV pilus assembly protein PilB
D VF_2187 pilC; pilus assembly protein PilC K02653 pilC; type IV pilus assembly protein PilC
D VF_2188 pilD; type 4 prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D VF_0627 type IV pilus biogenesis/stability protein K02656 pilF; type IV pilus assembly protein PilF
D VF_2293 pilQ; pili ecretion protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D VF_2294 pilP; pili assembly protein PilP K02665 pilP; type IV pilus assembly protein PilP
D VF_2295 pilO; pili assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D VF_2296 pilN; pili assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D VF_2297 pilM; pili assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D VF_0568 hypothetical protein K02671 pilV; type IV pilus assembly protein PilV
D VF_0570 hypothetical protein K02672 pilW; type IV pilus assembly protein PilW
D VF_0572 pili subunit PilA1 K02655 pilE; type IV pilus assembly protein PilE
D VF_0510 fimbrial protein precursor K02651 flp; pilus assembly protein Flp/PilA
D VF_A0218 flp2; fimbrial protein precursor Flp1 K02651 flp; pilus assembly protein Flp/PilA
D VF_0511 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VF_A1179 hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VF_0512 flp1; Flp pilus assembly protein CpaB family K02279 cpaB; pilus assembly protein CpaB
D VF_A0219 tungstate-binding protein precursor K02279 cpaB; pilus assembly protein CpaB
D VF_0513 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VF_A0220 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VF_0515 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VF_A0222 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VF_0516 tadA1; putative type IV secretion NTPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VF_A0223 tadA2; putative type IV secretion NTPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:vfi04812]
D VF_0372 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D VF_2196 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D VF_2197 ftsA; ATP-binding cell division protein involved in recruitment of FtsK to Z ring K03590 ftsA; cell division protein FtsA
D VF_1704 minC; septum inhibitor protein of the MinC-MinD-MinE system K03610 minC; septum site-determining protein MinC
D VF_1705 minD; membrane ATPase of the MinC-MinD-MinE system K03609 minD; septum site-determining protein MinD
D VF_1706 minE; cell division topological specificity factor of the MinC-MinD-MinE system K03608 minE; cell division topological specificity factor
D VF_2573 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VF_0113 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VF_1829 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VF_A0877 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VF_B0013 hypothetical protein K03496 parA; chromosome partitioning protein
D VF_A1172 ParA family protein K03496 parA; chromosome partitioning protein
D VF_2572 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VF_A1171 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:vfi04147]
D VF_0792 htpG; molecular chaperone HSP90 family K04079 HSP90A; molecular chaperone HtpG
D VF_2075 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VF_0913 gapA; glyceraldehyde-3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D VF_0442 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D VF_2258 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VF_A0494 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VF_0721 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D VF_1975 ahpC; alkyl hydroperoxide reductase, C22 subunit K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D VF_0205 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VF_1994 dnaK; chaperone Hsp70/DnaK, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
D VF_1467 chaperone, DnaK-like protein K04043 dnaK; molecular chaperone DnaK
D VF_0304 pgi; glucosephosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D VF_0637 guaB; IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D VF_2423 tufA; protein chain elongation factor EF-Tu (duplicate of tufB) K02358 tuf; elongation factor Tu
D VF_0233 tufB; protein chain elongation factor EF-Tu (duplicate of tufA) K02358 tuf; elongation factor Tu
D VF_1134 hinT; purine nucleoside phosphoramidase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D VF_0533 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_1708 fadD; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2256 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_2264 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VF_0461 sodium-dependent phosphate transporter K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter)
D VF_0793 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D VF_1688 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D VF_2304 argG; argininosuccinate synthetase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D VF_0264 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VF_A0355 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D VF_A0808 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D VF_A0236 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D VF_0098 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VF_0053 hemB; porphobilinogen synthase (delta-aminolevulinic acid dehydratase) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D VF_2106 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D VF_2394 purH; fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D VF_2178 lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_2301 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VF_A0468 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D VF_0206 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D VF_A0842 blc; outer membrane lipoprotein (lipocalin) K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:vfi02048]
D VF_A0539 type I restriction-modification system restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D VF_A0538 type I restriction-modification system specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D VF_A0535 hsdM; DNA methylase M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D VF_A0537 type I restriction-modification system methylation subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D VF_2289 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D VF_1049 putative DNA methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D VF_1470 hipA; HipA serine kinase, regulator with HipB, putative TA-system K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D VF_1469 hipB; HipB transcriptional repressor, hipAB operon K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VF_A0313 pspC; PspC transcriptional regulator, toxin of PspCB toxin-antitoxin pair K03973 pspC; phage shock protein C
D VF_A0312 pspB; antitoxin of PspCB toxin-antitoxin pair K03970 pspB; phage shock protein B
D VF_A0649 toxin of toxin-antitoxin (TA) stability system K19092 parE1_3_4; toxin ParE1/3/4
D VF_A0892 yjgK; conserved protein K19334 tabA; biofilm protein TabA
D VF_2196 ftsZ; GTP-binding tubulin-like cell division protein K03531 ftsZ; cell division protein FtsZ
D VF_0372 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D VF_2227 parC; DNA topoisomerase IV, subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D VF_2228 parE; DNA topoisomerase IV, subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D VF_1887 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VF_2096 hypothetical protein K09159 cptB; antitoxin CptB
D VF_0617 iscS; Sulfur mobilization protein for Fe-S synthesis, cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:vfi04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:vfi04090]
C 01504 Antimicrobial resistance genes [BR:vfi01504]
D VF_1630 sodium:proton antiporter K18218 tet35; tetracycline resistance efflux pump
D VF_A0790 chloramphenicol acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28]
D VF_A0656 hypothetical protein K18554 cpt; chloramphenicol 3-O phosphotransferase [EC:2.7.1.-]
D VF_1324 pentapeptide repeat protein K18555 qnr; fluoroquinolone resistance protein
D VF_1099 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D VF_A0178 cusS; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D VF_A0179 cusR; DNA-binding response regulator in two-component regulatory system with CusS K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D VF_0525 phoQ1; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0524 phoQ2; sensory histidine kinase in two-compoent regulatory system with PhoP K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VF_0526 phoP; DNA-binding response regulator in two-component regulatory system with PhoQ K07660 phoP; two-component system, OmpR family, response regulator PhoP
D VF_A1152 acrA; multidrug efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_2523 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_1582 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VF_2524 acriflavin resistance plasma membrane protein K18138 acrB; multidrug efflux pump
D VF_A0907 acriflavin resistance plasma membrane protein K18138 acrB; multidrug efflux pump
D VF_A1149 acrF; multidrug efflux system protein K18138 acrB; multidrug efflux pump
D VF_0782 cueR; DNA-binding transcriptional activator of copper-responsive regulon genes K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VF_2233 tolC; transport channel K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:vfi00537]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:vfi03100]
D VF_T0004 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0093 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0090 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0095 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VF_T0100 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0067 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0018 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0021 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0022 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0020 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0024 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0023 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VF_T0043 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0073 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0012 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0010 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0007 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_T0044 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_AT0009 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VF_AT0001 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0064 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0005 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0026 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0070 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0088 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0068 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VF_T0050 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VF_T0053 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VF_T0062 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VF_T0028 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_T0032 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_T0035 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_T0039 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_T0037 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VF_AT0004 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0107 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0069 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0002 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0092 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0104 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VF_T0085 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_AT0003 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_AT0008 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0083 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0077 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0059 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0052 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0061 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0081 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0079 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VF_T0097 tRNA-His K14226 tRNA-His; tRNA His
D VF_T0099 tRNA-His K14226 tRNA-His; tRNA His
D VF_T0003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VF_T0094 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VF_T0072 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VF_T0016 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0048 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0006 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0031 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0029 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0038 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_T0034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VF_AT0005 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VF_T0106 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VF_T0103 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VF_T0091 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VF_T0030 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0041 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0033 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0076 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0078 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0080 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0082 tRNA-Met K14230 tRNA-Met; tRNA Met
D VF_T0015 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VF_T0075 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VF_T0013 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VF_T0008 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VF_T0042 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VF_T0096 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VF_T0098 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VF_T0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0019 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_AT0002 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0066 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_AT0011 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0063 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0065 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0045 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VF_T0084 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_AT0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0087 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0014 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0011 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0009 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0074 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_T0101 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VF_AT0007 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VF_T0001 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VF_T0027 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VF_T0054 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0057 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0056 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0055 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0086 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_T0058 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VF_AT0006 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0102 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0105 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0089 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0046 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_T0047 tRNA-Val K14237 tRNA-Val; tRNA Val
D VF_R0015 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0034 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0031 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_AR0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0028 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0007 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0004 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0021 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0018 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0012 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0024 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VF_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0005 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0008 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0011 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0033 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_AR0002 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0014 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0027 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0020 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_R0030 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VF_AR0003 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0009 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0003 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0019 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0029 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0013 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0026 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0010 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0032 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0022 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0006 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0016 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_R0025 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D VF_2599 ffs; 4.5S RNA component of the signal recognition particle (SRP) K01983 ffs; SRP RNA
D VF_2654 rnpB; RnpB RNA, catalytic subunit of RNase P K01978 rnpB; M1 RNA
D VF_2639 ssrA; ssrA K15035 ssrA; transfer-messenger RNA
D VF_2597 qrr1; Qrr1 quorum regulatory RNA K15851 qrr; quorum regulatory RNA Qrr
D VF_2578 ryhB; RyhB regulatory antisense RNA involved in iron homeostasis K18507 ryhB; small regulatory RNA RyhB
D VF_2577 csrB2; CsrB2 RNA, regulator of CsrA K18515 csrB; small regulatory RNA CsrB
D VF_2593 csrB1; CsrB1 RNA, regulator of CsrA K18515 csrB; small regulatory RNA CsrB
D VF_2579 spf; Spot 42 regulatory RNA K18527 spf; small regulatory RNA Spot 42
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D VF_1681 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D VF_2360 gapA2; glyceraldehyde-3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107]
D VF_1642 fadH; 2,4-dienoyl-CoA reductase, NADH and FMN-linked K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D VF_0978 qor; quinone oxidoreductase, NADPH-dependent K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D VF_0331 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D VF_A0005 peptide-methionine (S)-S-oxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D VF_0914 msrB; methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D VF_A0849 yghU; glutathione transferase-like protein possibly involved in glutathionylspermidine metabolism K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D VF_1083 predicted glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D VF_1082 yfcG; predicted glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D VF_0578 aox; alternative oxidase 1 K17893 AOX1; ubiquinol oxidase [EC:1.10.3.11]
D VF_2055 yhjA; predicted cytochrome C peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D VF_1920 bcp; thiol peroxidase, thioredoxin-dependent K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D VF_A0889 tagD; lipid hydroperoxide peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D VF_A0890 thioredoxin peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D VF_A0335 osmotically inducible protein C K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D VF_1898 yfeX; conserved protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D VF_1068 pirin K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D VF_2316 hmp; fused nitric oxide dioxygenase/dihydropteridine reductase 2 K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D VF_0084 ftnA; ferritin iron storage protein (cytoplasmic) K02217 ftnA; ferritin [EC:1.16.3.2]
D VF_1780 fpr; ferredoxin-NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D VF_1781 norW; NADH:flavorubredoxin oxidoreductase K12265 norW; nitric oxide reductase FlRd-NAD(+) reductase [EC:1.18.1.-]
D VF_1923 yfgD; predicted oxidoreductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D VF_A0282 nrdG; anaerobic ribonucleotide reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D VF_1591 pflA; pyruvate formate lyase activating enzyme 1 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D VF_A0962 yjjW; predicted pyruvate formate lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D VF_A0864 hcr; HCP oxidoreductase, NADH-dependent K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D VF_2069 pcm; L-isoaspartate protein carboxylmethyltransferase type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D VF_A0760 cfa; cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D VF_1226 hutW; coproporphyrinogen oxidase, anaerobic K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D VF_A0915 acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D VF_1337 maa; maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D VF_0755 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D VF_0496 yhbS; predicted acyltransferase with acyl-CoA N-acyltransferase domain K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D VF_1120 acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D VF_A1054 yjaB; predicted acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D VF_1654 yjgM; predicted acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D VF_1344 acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D VF_1762 aat; leucyl/phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D VF_1763 arginine-tRNA-protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D VF_1409 yfiP; conserved protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D VF_1683 hypothetical cytosolic protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D VF_0088 hypothetical cytosolic protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D VF_0459 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D VF_0606 glucokinase K18673 bglK; beta-glucoside kinase [EC:2.7.1.85]
D VF_0732 apbE; predicted thiamine biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D VF_2235 glnE; fused deadenylyltransferase/adenylyltransferase for glutamine synthetase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D VF_1044 rrt; reverse transcriptase K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D VF_1769 ydiU; conserved protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D VF_0990 serine/threonine protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1]
D VF_0957 ybgC; predicted acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D VF_0853 esterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D VF_1034 trpH; conserved protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D VF_1808 sixA; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D VF_A0035 yjcS; predicted alkyl sulfatase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D VF_A0992 ydeN; conserved protein K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D VF_0437 endA; DNA-specific endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D VF_0501 yjjV; predicted Dnase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D VF_1733 ycfH; predicted metallodependent hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D VF_0052 tatD; DNase, TatD Family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D VF_0814 ybfF; putative esterase/lipase YbfF K01175 ybfF; esterase [EC:3.1.-.-]
D VF_0739 frsA; hydrolase, binds to enzyme IIA(Glc) K11750 frsA; esterase FrsA [EC:3.1.-.-]
D VF_A0882 bcsZ; endo-1,4-D-glucanase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D VF_A0731 treC; trehalose-6-P hydrolase K01215 dexB; glucan 1,6-alpha-glucosidase [EC:3.2.1.70]
D VF_0986 chitodextrinase K21606 endo_I; endo-chitodextinase [EC:3.2.1.202]
D VF_A0338 putative glucosyl hydrolase precursor K03931 ygjK; glucosidase [EC:3.2.1.-]
D VF_2543 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D VF_0378 beta-ureidopropionase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D VF_1208 yqfB; conserved protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D VF_0404 yjgF; ketoacid-binding protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D VF_2238 ygiF; predicted adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D VF_1746 yceF; predicted protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D VF_A0678 MoxR protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D VF_1425 MoxR protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D VF_A0901 MoxR protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D VF_A0498 ravA; MoxR-like ATPase, Regulatory ATPase Variant A, RavA K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D VF_A0994 hyaluronate lyase precursor K01727 hysA; hyaluronate lyase [EC:4.2.2.1]
D VF_0590 csdA; cysteine sulfinate desulfinase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D VF_A0456 peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D VF_0265 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D VF_1450 DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D VF_0932 rnfD; predicted inner membrane oxidoreductase (Rnf/Rsx reducing system) K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D VF_0933 rnfC; fused predicted 4Fe-4S ferredoxin-type protein/conserved protein (Rnf/Rsx reducing system) K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D VF_0934 rnfB; predicted iron-sulfur protein (Rnf/Rsx reducing system) K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D VF_0725 nqrA; sodium-translocating NADH:quinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D VF_0726 nqrB; sodium-translocating NADH:quinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D VF_0727 nqrC; sodium-translocating NADH:quinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D VF_0728 nqrD; sodium-translocating NADH:quinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D VF_0729 nqrE; sodium-translocating NADH:quinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D VF_0731 nqrF; sodium-translocating NADH:quinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D VF_1304 copper-exporting ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D VF_1522 zntA; zinc, cobalt and lead efflux system ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D VF_2164 sfsA; sugar fermentation stimulation protein A, predicted DNA-binding transcriptional regulator K06206 sfsA; sugar fermentation stimulation protein A
D VF_1620 torT; periplasmic sensory protein associated with the TorRS two-component regulatory system K11930 torT; periplasmic protein TorT
D VF_1971 acetoin utilization AcuB protein K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D VF_1366 fdhD; FdhD protein (FdsC) K02379 fdhD; FdhD protein
D VF_0622 fdx; ferredoxin, 2Fe-2S type, Isc system K04755 fdx; ferredoxin, 2Fe-2S
D VF_1199 iron-sulfur cluster-binding protein, putative K11107 yfaE; ferredoxin
D VF_0931 rnfG; predicted oxidoreductase (Rnf/Rsx reducing system) K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D VF_0930 rnfE; NADH-ubiquinone oxidoreductase (Rnf/Rsx reducing system) K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D VF_0935 rnfA; predicted inner membrane subunit (Rnf/Rsx reducing system) K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D VF_0001 mioC; FMN-binding protein MioC K06205 mioC; MioC protein
D VF_0447 fldB; flavodoxin 2 K03840 fldB; flavodoxin II
D VF_0618 iscU; Fe-S cluster assembly scaffold protein IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D VF_1782 norV; flavorubredoxin oxidoreductase K12264 norV; anaerobic nitric oxide reductase flavorubredoxin
D VF_1906 napD; protein required for assembly of periplasmic nitrate reductase (NapA) K02570 napD; periplasmic nitrate reductase NapD
D VF_1907 napF; ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) K02572 napF; ferredoxin-type protein NapF
D VF_A0297 TorE protein K02571 napE; periplasmic nitrate reductase NapE
D VF_0812 fldA; flavodoxin 1 K03839 fldA; flavodoxin I
D VF_1903 napC; nitrate reductase, cytochrome c-type, periplasmic K02569 napC; cytochrome c-type protein NapC
D VF_1553 nrfB; nitrite reductase, formate-dependent, penta-heme cytochrome c K04013 nrfB; cytochrome c-type protein NrfB
D VF_1552 nfrC; formate-dependent nitrite reductase, 4Fe4S subunit K04014 nrfC; protein NrfC
D VF_1551 nrfD; formate-dependent nitrite reductase, membrane subunit K04015 nrfD; protein NrfD
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D VF_1892 cysZ; predicted inner membrane protein K06203 cysZ; CysZ protein
D VF_0430 yggS; predicted enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D VF_1757 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D VF_1756 yciM; conserved protein K19804 lapB; lipopolysaccharide assembly protein B
D VF_A0883 bcsB; regulator of cellulose synthase, cyclic di-GMP binding K20541 bcsB; cellulose synthase operon protein B
C 99987 Cofactor metabolism
D VF_A0064 yggC; conserved protein with nucleoside triphosphate hydrolase domain K02173 yggC; putative kinase
D VF_0063 hemY; predicted protoheme IX synthesis protein K02498 hemY; HemY protein
D VF_0048 ubiB; 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D VF_0047 yigP; conserved protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D VF_2525 yqiC; hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D VF_0495 yhbT; predicted lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D VF_1410 abgT; predicted aminobenzoyl-glutamate transporter K12942 abgT; aminobenzoyl-glutamate transport protein
D VF_0639 aminobenzoyl-glutamate transport protein K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
C 99999 Others
D VF_1067 yqjF; predicted quinol oxidase subunit K15977 K15977; putative oxidoreductase
D VF_A0336 hypothetical membrane spanning protein K15977 K15977; putative oxidoreductase
D VF_A0568 yfiQ; fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D VF_A0595 cold shock protein K03704 cspA; cold shock protein
D VF_2561 cold shock protein K03704 cspA; cold shock protein
D VF_1767 cspD; DNA replication inhibitor K03704 cspA; cold shock protein
D VF_A1094 cspG; DNA-binding transcriptional regulator K03704 cspA; cold shock protein
D VF_2404 rsd; stationary phase protein, anti sigma-70 factor Rsd K07740 rsd; regulator of sigma D
D VF_2153 glnK; nitrogen regulatory protein GlnK K04752 glnK; nitrogen regulatory protein P-II 2
D VF_0120 yhgF; predicted transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D VF_0153 rjg; right junction gene, LPS locus K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D VF_0861 hslJ; heat shock protein HslJ K03668 hslJ; heat shock protein HslJ
D VF_1766 clpS; specificity factor for ClpA-ClpP chaperone-protease complex K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D VF_0795 tig; peptidyl-prolyl cis/trans isomerase (trigger factor) K03545 tig; trigger factor
D VF_0672 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein
D VF_0671 ureF; urease accessory protein UreF K03188 ureF; urease accessory protein
D VF_0670 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D VF_0676 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein
D VF_2002 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D VF_2555 magnesium chelatase K07391 comM; magnesium chelatase family protein
D VF_2279 yhfA; conserved protein K07397 yhfA; putative redox protein
D VF_2461 gntY; predicted gluconate transport associated protein K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D VF_1575 O6-methylguanine-DNA methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D VF_0594 xni; exonuclease IX (5'-3' exonuclease) K01146 xni; protein Xni
D VF_0126 yicR; protein associated with replication fork, possible DNA repair protein K03630 radC; DNA repair protein RadC
D VF_A0522 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D VF_B0007 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D VF_0044 rmuC; predicted recombination limiting protein K09760 rmuC; DNA recombination protein RmuC
D VF_A0395 ybjD; conserved protein with nucleoside triphosphate hydrolase domain K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D VF_2212 yraN; conserved protein K07460 yraN; putative endonuclease
D VF_A0603 yhbQ; predicted endonuclease K07461 K07461; putative endonuclease
D VF_2541 dprA; DNA processing protein DprA (Smf), possibly competence-related K04096 smf; DNA processing protein
D VF_0907 rarA; recombination protein K07478 ycaJ; putative ATPase
D VF_2539 yrdD; predicted DNA topoisomerase K07479 yrdD; putative DNA topoisomerase
C 99979 Viral proteins
C 99998 Others
D VF_A0311 pspA; regulatory protein for phage-shock-protein operon K03969 pspA; phage shock protein A
D VF_A0125 rhodanese-related sulfurtransferase K03972 pspE; phage shock protein E
D VF_1686 ybaB; conserved protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D VF_1581 acriflavin resistance plasma membrane protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D VF_1121 yeaV; predicted transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D VF_2515 betT; choline transporter of high affinity K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D VF_1124 yhiP; predicted transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D VF_0802 di-/tripeptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D VF_A0123 ybgH; predicted transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D VF_A0124 tppB; predicted transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D VF_2240 pitA; phosphate transporter, low-affinity K03306 TC.PIT; inorganic phosphate transporter, PiT family
D VF_A0351 yidK; predicted transporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D VF_0668 nanT; N-acetylneuraminate transporter, sodium-glucose/galactose cotransporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D VF_1730 sodium/proline symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D VF_1605 hypothetical protein K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D VF_0660 sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D VF_2059 sodium-linked D-alanine glycine permease K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D VF_2110 yaaJ; predicted transporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D VF_A0363 sodium/proton-dependent alanine carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D VF_1454 sodium-linked D-alanine glycine permease K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D VF_0446 brnQ; predicted branched chain amino acid transporter (LIV-II) K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D VF_2065 nucleoside permease NupC K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VF_1322 nucleoside permease NupC K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VF_0502 yeiM; predicted nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VF_1096 nucleoside permease NupC K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VF_A0967 nucleoside permease NupC K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VF_0170 rfbX; predicted polisoprenol-linked O-antigen transporter K03328 TC.PST; polysaccharide transporter, PST family
D VF_0889 ybjL; predicted transporter K07085 K07085; putative transport protein
D VF_1065 integral membrane protein with TrkA domains K07085 K07085; putative transport protein
C 99978 Cell growth
D VF_1025 yciB; predicted inner membrane protein K06190 ispZ; intracellular septation protein
D VF_2549 Similarity to Gram-positive sporulation control protein Spo0M K06377 spo0M; sporulation-control protein
D VF_1210 similarity to Gram-positive sporulation control protein Spo0M K06377 spo0M; sporulation-control protein
D VF_2351 envC; protease with a role in cell division K22719 envC; murein hydrolase activator
C 99993 Cell motility
D VF_1137 putative lipoprotein K07337 K07337; penicillin-binding protein activator
D VF_1573 tfoX2; DNA transformation protein TfoX2 (Sxy) K07343 tfoX; DNA transformation protein and related proteins
D VF_0896 tfoX1; DNA transformation protein TfoX1 (Sxy) K07343 tfoX; DNA transformation protein and related proteins
D VF_0599 syd; predicted protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D VF_1279 proQ; predicted structural transport element K03607 proQ; ProP effector
D VF_0083 uspA; universal stress global response regulator K06149 uspA; universal stress protein A
D VF_1310 uspE; stress-induced protein K14055 uspE; universal stress protein E
D VF_0272 universal stress protein family K14061 uspF; universal stress protein F
D VF_0099 typA; GTP-binding protein K06207 typA; GTP-binding protein
D VF_A0765 chrR; zinc-binding anti-sigmaE4 factor ChrR K07167 chrR; putative transcriptional regulator
D VF_0758 PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D VF_1771 prkA; serine kinase PrkA K07180 prkA; serine protein kinase
D VF_2513 cyclic nucleotide binding protein/2 CBS domains K07182 K07182; CBS domain-containing protein
D VF_2381 cyclic nucleotide binding protein/2 CBS domains K07182 K07182; CBS domain-containing protein
D VF_A0350 cyclic nucleotide binding protein/2 CBS domains K07182 K07182; CBS domain-containing protein
D VF_2241 htrG; predicted signal transduction protein (SH3 domain) K07184 ygiM; SH3 domain protein
D VF_0508 SMP protein precursor K07186 smp; membrane protein
D VF_1240 yajQ; predicted nucleotide binding protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D VF_0906 lolA; lipoprotein chaperone K03634 lolA; outer membrane lipoprotein carrier protein
D VF_0766 lolB; lipoprotein chaperone K02494 lolB; outer membrane lipoprotein LolB
D VF_1815 vacJ; VacJ lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D VF_1953 skp; periplasmic chaperone K06142 hlpA; outer membrane protein
D VF_2068 nlpD; lipoprotein NlpD K06194 nlpD; lipoprotein NlpD
D VF_0491 nlpI; lipoprotein NlpI K05803 nlpI; lipoprotein NlpI
D VF_0300 putative salt-induced outer membrane protein K07283 ydiY; putative salt-induced outer membrane protein
D VF_0988 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D VF_1710 outer membrane protein Slp precursor K07285 slp; outer membrane lipoprotein
D VF_0722 putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D VF_1751 asmA; predicted assembly protein K07289 asmA; AsmA protein
D VF_A0167 hypothetical protein K07340 ybbJ; inner membrane protein
D VF_A0591 multidrug resistance protein A K01993 ABC-2.TX; HlyD family secretion protein
D VF_A0110 ybhG; predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor K01993 ABC-2.TX; HlyD family secretion protein
D VF_1161 periplasmic component of efflux system K02005 ABC.CD.TX; HlyD family secretion protein
D VF_1820 ccmE; periplasmic heme chaperone K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D VF_1817 ccmH; cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D VF_1548 nrfF; heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D VF_0628 yfgA; integral membrane protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D VF_1982 phoU; negative regulator of PhoR/PhoB two-component regulator K02039 phoU; phosphate transport system protein
D VF_A0278 alx; putative membrane-bound redox modulator that is induced by high pH K05794 terC; tellurite resistance protein TerC
D VF_1976 cutC; copper homeostasis protein K06201 cutC; copper homeostasis protein
D VF_2486 cyaY; frataxin, iron-binding and oxidizing protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D VF_1227 huvX; HuvX protein K07227 chuX; heme iron utilization protein
D VF_1190 Uncharacterized iron-regulated protein K07231 K07231; putative iron-regulated protein
D VF_A0439 nnrS; nitrite and/or nitric oxide reductase K07234 K07234; uncharacterized protein involved in response to NO
B
B 09194 Poorly characterized
C 99996 General function prediction only
D VF_1692 cvpA; membrane protein required for colicin V production K03558 cvpA; membrane protein required for colicin V production
D VF_1313 bax; conserved protein K03796 bax; Bax protein
D VF_A0116 yceM; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain K03810 mviM; virulence factor
D VF_0317 elaA; predicted acyltransferase with acyl-CoA N-acyltransferase domain K02348 elaA; ElaA protein
D VF_A0065 predicted zinc-binding hydrolase K04477 ycdX; putative hydrolase
D VF_A0774 ycdX; predicted zinc-binding hydrolase K04477 ycdX; putative hydrolase
D VF_2115 yfiD; pyruvate formate lyase subunit K06866 grcA; autonomous glycyl radical cofactor
D VF_A0362 ygjH; conserved protein K06878 K06878; tRNA-binding protein
D VF_2159 serine protease K07001 K07001; NTE family protein
D VF_1791 rssA; putative serine protease K07001 K07001; NTE family protein
D VF_A0714 serine protease K07001 K07001; NTE family protein
D VF_2134 yadR; conserved protein K15724 erpA; iron-sulfur cluster insertion protein
D VF_0100 yihY; predicted inner membrane protein K07058 K07058; membrane protein
D VF_2352 fxsA; inner membrane protein K07113 fxsA; UPF0716 protein FxsA
D VF_0589 csdE; predicted Fe-S metabolism protein K02426 sufE; cysteine desulfuration protein SufE
D VF_1785 hflD; predicted lysogenization regulator K07153 hflD; high frequency lysogenization protein
D VF_0224 slyX; protein SlyX K03745 slyX; SlyX protein
D VF_2540 smg; conserved protein K03747 smg; Smg protein
D VF_A0503 creA; conserved CreA protein K05805 creA; CreA protein
D VF_0438 yggI; conserved protein K02742 sprT; SprT protein
D VF_1693 DedD protein K03749 dedD; DedD protein
D VF_2290 conserved protein K03112 damX; DamX protein
D VF_1560 sanA; SanA protein K03748 sanA; SanA protein
D VF_1276 pqiA; paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D VF_A0812 integral membrane protein K08974 K08974; putative membrane protein
D VF_1814 yjdF; conserved inner membrane protein K08984 yjdF; putative membrane protein
D VF_0089 hypothetical outer membrane protein K08985 K08985; putative lipoprotein
D VF_A0315 ycjF; conserved inner membrane protein K08990 ycjF; putative membrane protein
D VF_2455 hypothetical protein K08993 yhhL; putative membrane protein
D VF_1604 ychJ; conserved protein K09858 K09858; SEC-C motif domain protein
D VF_1576 ybaY; predicted outer membrane lipoprotein K09914 K09914; putative lipoprotein
D VF_1342 phosphoribosylaminoimidazole carboxylase ATPase subunit K11312 K11312; cupin 2 domain-containing protein
D VF_2271 maltose operon periplasmic protein precursor K05775 malM; maltose operon periplasmic protein
D VF_0107 hypothetical protein K13256 psiE; protein PsiE
D VF_A0583 hypothetical protein K06193 phnA; protein PhnA
D VF_1347 phnA; alkylphosphonate utilization operon protein K06193 phnA; protein PhnA
C 99997 Function unknown
D VF_A0900 aslB; predicted regulator of arylsulfatase activity K06871 K06871; uncharacterized protein
D VF_A0993 arylsulfatase regulator (Fe-S oxidoreductase) K06871 K06871; uncharacterized protein
D VF_1417 arylsulfatase regulator (Fe-S oxidoreductase) K06871 K06871; uncharacterized protein
D VF_A0208 arylsulfatase regulator (Fe-S oxidoreductase) K06871 K06871; uncharacterized protein
D VF_A0314 ycjX; conserved protein with nucleoside triphosphate hydrolase domain K06918 K06918; uncharacterized protein
D VF_1661 yeiW; conserved protein K06940 K06940; uncharacterized protein
D VF_1335 yedJ; predicted phosphohydrolase K06950 K06950; uncharacterized protein
D VF_A0762 putative dehydrogenase K06954 K06954; uncharacterized protein
D VF_1513 ydjN; predicted transporter K06956 K06956; uncharacterized protein
D VF_A0728 acetyltransferase K06975 K06975; uncharacterized protein
D VF_0657 succinylglutamate desuccinylase/aspartoacylase family protein K06987 K06987; uncharacterized protein
D VF_2229 yqiA; predicted esterase K07000 K07000; uncharacterized protein
D VF_1142 ycfP; conserved protein K07000 K07000; uncharacterized protein
D VF_1451 nuclease K07004 K07004; uncharacterized protein
D VF_1650 yejM; predicted hydrolase, inner membrane K07014 K07014; uncharacterized protein
D VF_0137 choline-sulfatase K07014 K07014; uncharacterized protein
D VF_0216 yheT; predicted hydrolase K07019 K07019; uncharacterized protein
D VF_1150 yaaH; conserved inner membrane protein associated with acetate transport K07034 K07034; uncharacterized protein
D VF_1636 preprotein translocase subunit-like protein K07039 K07039; uncharacterized protein
D VF_0966 hypothetical protein K07039 K07039; uncharacterized protein
D VF_0222 hypothetical protein K07070 K07070; uncharacterized protein
D VF_0788 yfcH; conserved protein with NAD(P)-binding Rossmann-fold domain K07071 K07071; uncharacterized protein
D VF_0274 immunogenic protein K07080 K07080; uncharacterized protein
D VF_1089 immunogenic protein K07080 K07080; uncharacterized protein
D VF_A0175 hypothetical membrane spanning protein K07089 K07089; uncharacterized protein
D VF_A0050 transporter K07089 K07089; uncharacterized protein
D VF_1008 yfcA; conserved inner membrane protein K07090 K07090; uncharacterized protein
D VF_1119 predicted permease K07090 K07090; uncharacterized protein
D VF_0458 hypothetical protein K07090 K07090; uncharacterized protein
D VF_A1057 predicted phosphatase K07093 K07093; uncharacterized protein
D VF_0789 yfcE; predicted phosphatase K07095 K07095; uncharacterized protein
D VF_0329 ytfJ; predicted transcriptional regulator K07109 K07109; uncharacterized protein
D VF_2062 hypothetical protein K07112 K07112; uncharacterized protein
D VF_2061 hypothetical protein K07112 K07112; uncharacterized protein
D VF_2211 yraM; conserved protein K07121 K07121; uncharacterized protein
D VF_1477 tetratricopeptide repeat family protein K07126 K07126; uncharacterized protein
D VF_1540 suppressor/enhancer of lin-12 K07126 K07126; uncharacterized protein
D VF_2123 yhcC; predicted Fe-S oxidoreductase K07139 K07139; uncharacterized protein
D VF_A0264 ycbX; predicted 2Fe-2S cluster-containing protein K07140 K07140; MOSC domain-containing protein
D VF_2251 GatB/YqeY domain protein K09117 K09117; uncharacterized protein
D VF_0427 yggU; conserved protein K09131 K09131; uncharacterized protein
D VF_0744 ybeD; conserved protein K09158 K09158; uncharacterized protein
D VF_1660 hypothetical protein K09160 K09160; uncharacterized protein
D VF_1794 yfbU; conserved protein K09161 K09161; uncharacterized protein
D VF_A0761 plasmid partition ParA protein K09701 K09701; uncharacterized protein
D VF_0983 lipoprotein, putative K09712 K09712; uncharacterized protein
D VF_1495 hypothetical cytosolic protein K09749 K09749; uncharacterized protein
D VF_A1158 hypothetical cytosolic protein K09749 K09749; uncharacterized protein
D VF_0601 yaiI; conserved protein K09768 K09768; uncharacterized protein
D VF_1023 yciI; predicted enzyme K09780 K09780; uncharacterized protein
D VF_A0268 yedI; conserved inner membrane protein K09781 K09781; uncharacterized protein
D VF_1773 yeaH; conserved protein K09786 K09786; uncharacterized protein
D VF_A0426 conserved cytosolic protein K09791 K09791; uncharacterized protein
D VF_1307 integral membrane protein K09792 K09792; uncharacterized protein
D VF_A0822 hypothetical protein K09794 K09794; uncharacterized protein
D VF_2000 yfjF; predicted protein K09801 K09801; uncharacterized protein
D VF_A0606 hypothetical protein K09802 K09802; uncharacterized protein
D VF_2107 yggE; conserved protein K09807 K09807; uncharacterized protein
D VF_0733 putative periplasmic protein K05952 K05952; uncharacterized protein
D VF_1434 putative periplasmic protein K05952 K05952; uncharacterized protein
D VF_1244 hypothetical protein K00243 K00243; uncharacterized protein
D VF_1135 tetratricopeptide repeat domain protein K09859 K09859; uncharacterized protein
D VF_2109 yaaA; conserved protein K09861 K09861; uncharacterized protein
D VF_2191 non-essential pilus assembly protein K09862 K09862; uncharacterized protein
D VF_2399 yjaG; conserved protein K09891 K09891; uncharacterized protein
D VF_0078 yihI; conserved protein K09894 K09894; uncharacterized protein
D VF_2102 ygfB; predicted protein K09895 K09895; uncharacterized protein
D VF_2550 yihD; conserved protein K09896 K09896; uncharacterized protein
D VF_A1045 hypothetical protein K09897 K09897; uncharacterized protein
D VF_A1070 hypothetical protein K09897 K09897; uncharacterized protein
D VF_0215 enolase K09898 K09898; uncharacterized protein
D VF_0838 yfbV; conserved inner membrane protein K09899 K09899; uncharacterized protein
D VF_0910 yciU; predicted protein K09901 K09901; uncharacterized protein
D VF_1703 ycgL; conserved protein K09902 K09902; uncharacterized protein
D VF_1649 hypothetical protein K09904 K09904; uncharacterized protein
D VF_0840 yecM; predicted metal-binding enzyme K09907 K09907; uncharacterized protein
D VF_2224 yhcB; conserved protein K09908 K09908; uncharacterized protein
D VF_1616 conserved membrane protein K09909 K09909; uncharacterized protein
D VF_2154 yacL; Hypothetical protein yacL K09910 K09910; uncharacterized protein
D VF_1294 ycbG; conserved protein K09911 K09911; uncharacterized protein
D VF_A0295 yaiL; nucleoprotein/polynucleotide-associated enzyme K09912 K09912; uncharacterized protein
D VF_A0604 yceH; conserved protein K09915 K09915; uncharacterized protein
D VF_0916 general negative regulator of transcription subunit 1 K09916 K09916; uncharacterized protein
D VF_A0563 hypothetical protein K09917 K09917; uncharacterized protein
D VF_0577 hypothetical protein K09918 K09918; uncharacterized protein
D VF_2231 yqiB; predicted dehydrogenase K09920 K09920; uncharacterized protein
D VF_2659 conserved hypothetical protein K09921 K09921; uncharacterized protein
D VF_1139 hypothetical protein K09923 K09923; uncharacterized protein
D VF_1303 conserved membrane protein K09926 K09926; uncharacterized protein
D VF_A0422 hypothetical protein K09928 K09928; uncharacterized protein
D VF_2319 hypothetical protein K09937 K09937; uncharacterized protein
D VF_1925 hypothetical protein K09938 K09938; uncharacterized protein
D VF_A1039 hypothetical protein K09941 K09941; uncharacterized protein
D VF_1193 hypothetical protein K09947 K09947; uncharacterized protein
D VF_0325 conserved secreted protein K09950 K09950; uncharacterized protein
D VF_A0409 ypeB; predicted protein K09954 K09954; uncharacterized protein
D VF_A0364 transporter K09964 K09964; uncharacterized protein
D VF_0869 hypothetical protein K09982 K09982; uncharacterized protein
D VF_2239 hypothetical protein K07220 K07220; uncharacterized protein
D VF_1192 predicted periplasmic lipoprotein K07338 K07338; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 28, 2024