+E Transcription factors KO
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Transcription Factors - Vibrio gazogenes
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D BSQ33_08360 DNA-binding transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D BSQ33_21340 hypothetical protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D BSQ33_17315 transcriptional regulator MelR K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D BSQ33_03125 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D BSQ33_13125 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D BSQ33_12740 cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BSQ33_14715 XRE family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BSQ33_21045 hypothetical protein K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D BSQ33_01885 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D BSQ33_13465 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSQ33_07470 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSQ33_03615 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D BSQ33_09230 transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D BSQ33_15725 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D BSQ33_07495 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D BSQ33_12125 transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D BSQ33_10315 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BSQ33_12510 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D BSQ33_11190 transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D BSQ33_14040 LysR family transcriptional regulator K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D BSQ33_14880 transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D BSQ33_20955 LysR family transcriptional regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D BSQ33_03255 hypothetical protein K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D BSQ33_12715 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D BSQ33_03570 transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D BSQ33_20270 LysR family transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D BSQ33_12785 sugar metabolism transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D BSQ33_14350 DeoR/GlpR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D BSQ33_18680 srlR; transcriptional regulator K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D BSQ33_12930 transcriptional regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D BSQ33_01350 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSQ33_01240 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSQ33_05035 DNA-binding transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSQ33_17835 transcriptional repressor PurR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSQ33_16560 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSQ33_18120 XylR family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSQ33_16600 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D BSQ33_10140 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D BSQ33_18025 DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D BSQ33_02895 transcriptional regulator K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D BSQ33_13540 trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D BSQ33_02535 transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D BSQ33_21385 transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D BSQ33_08545 hypothetical protein K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D BSQ33_03465 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D BSQ33_14910 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D BSQ33_00325 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BSQ33_11565 transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D BSQ33_13860 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D BSQ33_06555 GntR family transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D BSQ33_11205 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D BSQ33_08605 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D BSQ33_00415 hypothetical protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D BSQ33_09660 nucleoid occlusion factor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D BSQ33_17220 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D BSQ33_11585 LuxR family transcriptional regulator K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D BSQ33_05805 hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D BSQ33_08050 DNA-binding transcriptional regulator FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D BSQ33_08590 transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D BSQ33_17795 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSQ33_14890 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSQ33_20765 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSQ33_21090 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSQ33_15700 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D BSQ33_03330 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D BSQ33_06820 helix-turn-helix transcriptional regulator K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D BSQ33_02100 transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D BSQ33_20235 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D BSQ33_20460 transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D BSQ33_20990 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D BSQ33_13715 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BSQ33_18815 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D BSQ33_14310 zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D BSQ33_12850 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D BSQ33_21440 hypothetical protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D BSQ33_03985 ferric iron uptake transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D BSQ33_06990 transcriptional regulator Zur K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D BSQ33_07780 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D BSQ33_05565 DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D BSQ33_11645 IclR family transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
D BSQ33_11680 hypothetical protein K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D BSQ33_10500 transcriptional regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D BSQ33_01045 transcriptional regulator FNR K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D BSQ33_12565 Fe-S cluster assembly transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D BSQ33_01270 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D BSQ33_12130 transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
D BSQ33_10265 transcriptional regulator K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA
C Other families
D BSQ33_20715 transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D BSQ33_15640 transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D BSQ33_07320 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D BSQ33_07435 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D BSQ33_12230 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D BSQ33_17440 SgrR family transcriptional regulator K11925 sgrR; SgrR family transcriptional regulator
D BSQ33_04125 sigma-54-dependent Fis family transcriptional regulator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D BSQ33_12075 sigma-54-dependent Fis family transcriptional regulator K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D BSQ33_18510 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D BSQ33_19925 AAA family ATPase K11908 vasH; sigma-54 dependent transcriptional regulator
D BSQ33_21170 nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D BSQ33_06725 hypothetical protein K15836 fhlA; formate hydrogenlyase transcriptional activator
B Ribbon-helix-helix
C CopG family
C Other families
D BSQ33_10115 Met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D BSQ33_20310 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
D BSQ33_15920 antitermination protein BlgG K03488 licT; beta-glucoside operon transcriptional antiterminator
D BSQ33_11005 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D BSQ33_13095 transcription antiterminator BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D BSQ33_15980 hypothetical protein K03491 licR; probable licABCH operon transcriptional regulator
C Others
D BSQ33_04925 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D BSQ33_20365 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BSQ33_08790 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D BSQ33_13785 transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D BSQ33_06525 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D BSQ33_13795 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D BSQ33_14730 transcriptional regulator K02565 nagC; N-acetylglucosamine repressor
D BSQ33_14275 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D BSQ33_20290 MltR family transcriptional regulator K02562 mtlR; mannitol operon repressor
D BSQ33_01485 DNA-binding transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D BSQ33_00210 phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D BSQ33_00225 phage shock protein C K03973 pspC; phage shock protein C
D BSQ33_09525 AlpA family transcriptional regulator K07733 alpA; prophage regulatory protein
D BSQ33_09565 transcriptional regulator K07733 alpA; prophage regulatory protein
D BSQ33_06180 hypothetical protein K07735 algH; putative transcriptional regulator
D BSQ33_11710 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D BSQ33_04820 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D BSQ33_04835 sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0