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Transcription Machinery - Vibrio spartinae
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E Vspart_00374 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E Vspart_03100 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E Vspart_03099 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E Vspart_00228 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E Vspart_02735 rpoD; Sigma-70 K03086 rpoD; RNA polymerase primary sigma factor
E Vspart_02717 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E Vspart_00507 rpoE; Sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E Vspart_03245 rpoH; Heat shock regulatory protein F33.4 K03089 rpoH; RNA polymerase sigma-32 factor
E Vspart_00415 rpoN2; RNA polymerase sigma-54 factor 2 K03092 rpoN; RNA polymerase sigma-54 factor
E Vspart_02330 fliA; Sigma-F factor K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E Vspart_00437 rapA; RNA polymerase-associated protein RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
E Vspart_00616 nusA; Transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
E Vspart_02525 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
E Vspart_03105 nusG; Transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
E Vspart_02662 sspA_1; Stringent starvation protein A K03599 sspA; stringent starvation protein A
E Vspart_02661 sspB; Stringent starvation protein B K03600 sspB; stringent starvation protein B
E Vspart_02863 rsbT; Serine/threonine-protein kinase RsbT K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E Vspart_02864 rsbS; Stressosome protein RsbS K17762 rsbS; rsbT antagonist protein RsbS
E Vspart_02865 rsbRA; Stressosome protein RsbRA K17763 rsbR; rsbT co-antagonist protein RsbR
E Vspart_00508 rseA; Sigma-E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA
E Vspart_00509 rseB; Sigma-E factor regulatory protein RseB precursor K03598 rseB; sigma-E factor negative regulatory protein RseB
E Vspart_00510 rseC; Sigma-E factor regulatory protein RseC K03803 rseC; sigma-E factor negative regulatory protein RseC
D Transcription elongation factors
E Vspart_00587 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
E Vspart_00605 greA; Transcript cleavage factor GreA K03624 greA; transcription elongation factor GreA
E Vspart_03150 greB; Transcript cleavage factor GreB K04760 greB; transcription elongation factor GreB
D Transcription termination factor
E Vspart_03121 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024