+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Vitis vinifera (wine grape)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        100252253 mRNA cap guanine-N7 methyltransferase 2	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        100243615 mRNA cap guanine-N7 methyltransferase 1 isoform X2	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        100256199 uncharacterized protein LOC100256199	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        100244503 cyclin-dependent kinase D-1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        100247566 cyclin-dependent kinase D-3 isoform X1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
D      Cap binding complex
E        100265341 nuclear cap-binding protein subunit 1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        100265980 nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        100261950 pre-mRNA cleavage factor Im 25 kDa subunit 2	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        100266110 pre-mRNA cleavage factor Im 25 kDa subunit 2 isoform X1	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        100250770 pre-mRNA cleavage factor Im 25 kDa subunit 1	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        100246290 uncharacterized protein LOC100246290	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
E        100268141 uncharacterized protein LOC100268141 isoform X1	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        100242380 protein CLP1 homolog	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        100251089 polyadenylation and cleavage factor homolog 4 isoform X2	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        100255600 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        100256706 cleavage and polyadenylation specificity factor subunit 1 isoform X2	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        100267865 cleavage and polyadenylation specificity factor subunit 2 isoform X1	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        100261042 cleavage and polyadenylation specificity factor subunit 3-I isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        100266252 cleavage and polyadenylation specificity factor subunit 3-I isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        100252331 uncharacterized protein LOC100252331 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        100253258 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        100263567 flowering time control protein FY	K15542 PFS2; polyadenylation factor subunit 2 
E        100255744 protein ANTHESIS POMOTING FACTOR 1	K14962 WDR82; COMPASS component SWD2 
E        100247531 protein ANTHESIS POMOTING FACTOR 1	K14962 WDR82; COMPASS component SWD2 
E        100259840 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100250219 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100263930 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100258649 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100240815 serine/threonine-protein phosphatase PP1 isoform X2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100256994 serine/threonine-protein phosphatase PP1 isoform X2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100240794 serine/threonine-protein phosphatase PP1 isozyme 3 isoform X2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        100256509 uncharacterized protein LOC100256509	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        100267233 cleavage stimulation factor subunit 50 isoform X1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        100256296 cleavage stimulating factor 64	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        100262033 cleavage stimulation factor subunit 77 isoform X1	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        100262578 uncharacterized protein LOC100262578	K06100 SYMPK; symplekin 
E        100266091 uncharacterized protein LOC100266091 isoform X1	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        100257709 uncharacterized protein LOC100257709	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        109124003 small nuclear ribonucleoprotein SmD3b	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        100254787 small nuclear ribonucleoprotein SmD3b	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        100250427 small nuclear ribonucleoprotein SmD3b	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        100257667 uncharacterized protein LOC100257667	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        100263985 probable small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        100247783 probable small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        100267865 cleavage and polyadenylation specificity factor subunit 2 isoform X1	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        100261042 cleavage and polyadenylation specificity factor subunit 3-I isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        100266252 cleavage and polyadenylation specificity factor subunit 3-I isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        100256296 cleavage stimulating factor 64	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        100262578 uncharacterized protein LOC100262578	K06100 SYMPK; symplekin 
E        100266091 uncharacterized protein LOC100266091 isoform X1	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        100261013 transcription elongation factor SPT4 homolog 2	K15171 SUPT4H1; transcription elongation factor SPT4 
E        100267652 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        100256414 N6-adenosine-methyltransferase MT-A70-like	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        100254343 N6-adenosine-methyltransferase non-catalytic subunit MTB	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        100247029 uncharacterized protein LOC100247029 isoform X2	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        100246679 FKBP12-interacting protein of 37 kDa isoform X1	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        100265790 uncharacterized protein LOC100265790 isoform X1	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        100265054 uncharacterized protein LOC100265054	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        100244343 E3 ubiquitin-protein ligase HAKAI homolog	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        100252483 nuclear poly(A) polymerase 1 isoform X2	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        100263460 nuclear poly(A) polymerase 4 isoform X1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        100267147 nuclear poly(A) polymerase 3	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        100268087 nuclear poly(A) polymerase 1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        100268088 nuclear poly(A) polymerase 4 isoform X1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        100256563 protein BREAST CANCER SUSCEPTIBILITY 1 homolog	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        100253255 BRCA1-associated RING domain protein 1 isoform X1	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        100259455 zinc finger CCCH domain-containing protein 41	K13192 RBM26; RNA-binding protein 26 
E        100256702 RNA demethylase ALKBH9B	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        100256341 RNA demethylase ALKBH10B	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        100250563 RNA demethylase ALKBH9B	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
C    Other processing factors
D      100256009 KIN17-like protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      100256576 uncharacterized protein LOC100256576 isoform X1	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      100254817 serrate RNA effector molecule	K27103 SRRT; serrate RNA effector molecule 
D      100266053 serrate RNA effector molecule isoform X1	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        100260882 RNA-binding protein Y14	K12876 RBM8A; RNA-binding protein 8A 
E        100263147 protein mago nashi homolog 2	K12877 MAGOH; protein mago nashi 
E        100257081 THO complex subunit 4A	K12881 THOC4; THO complex subunit 4 
E        100257009 THO complex subunit 4D	K12881 THOC4; THO complex subunit 4 
E        100268003 DEAD-box ATP-dependent RNA helicase 15 isoform X2	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        100250852 DEAD-box ATP-dependent RNA helicase 15	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        100255368 eukaryotic initiation factor 4A-3	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        100250532 histone deacetylase complex subunit SAP18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        100245237 uncharacterized protein LOC100245237	K13114 PNN; pinin 
E        100252593 uncharacterized protein LOC100252593 isoform X1	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        100248897 uncharacterized protein LOC100248897 isoform X1	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        100267894 serine/arginine-rich splicing factor SR45	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        100246732 uncharacterized protein LOC100246732	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        100250474 THO complex subunit 1 isoform X1	K12878 THOC1; THO complex subunit 1 
E        100262610 THO complex subunit 1 isoform X2	K12878 THOC1; THO complex subunit 1 
E        100254201 THO complex subunit 2	K12879 THOC2; THO complex subunit 2 
E        100241262 THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        100257081 THO complex subunit 4A	K12881 THOC4; THO complex subunit 4 
E        100257009 THO complex subunit 4D	K12881 THOC4; THO complex subunit 4 
E        100242063 THO complex subunit 5B isoform X1	K13174 THOC5; THO complex subunit 5 
D      TREX-2 complex
E        100261071 enhanced ethylene response protein 5	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        100267214 protein DELETION OF SUV3 SUPPRESSOR 1(I)	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        100258382 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        100266559 SAC3 family protein B	K23719 SAC3; nuclear mRNA export protein SAC3 
E        100259082 SAC3 family protein C isoform X1	K23719 SAC3; nuclear mRNA export protein SAC3 
E        100852775 SAC3 family protein C isoform X1	K23719 SAC3; nuclear mRNA export protein SAC3 
E        100852523 SAC3 family protein C isoform X2	K23719 SAC3; nuclear mRNA export protein SAC3 
E        100852594 SAC3 family protein C isoform X2	K23719 SAC3; nuclear mRNA export protein SAC3 
E        100853276 SAC3 family protein C isoform X2	K23719 SAC3; nuclear mRNA export protein SAC3 
E        132254873 SAC3 family protein C-like	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        100251875 nuclear-pore anchor isoform X1	K09291 TPR; nucleoprotein TPR 
E        100250245 protein RAE1	K14298 RAE1; mRNA export factor 
E        100250787 protein RAE1	K14298 RAE1; mRNA export factor 
E        100249128 protein transport protein SEC13 homolog B	K14004 SEC13; protein transport protein SEC13 
E        100261919 protein transport protein SEC13 homolog B	K14004 SEC13; protein transport protein SEC13 
E        104877626 protein transport protein SEC13 homolog B	K14004 SEC13; protein transport protein SEC13 
E        100256006 nuclear pore complex protein NUP85	K14304 NUP85; nuclear pore complex protein Nup85 
E        100251872 nuclear pore complex protein NUP43	K14305 NUP43; nuclear pore complex protein Nup43 
E        100261574 uncharacterized protein LOC100261574	K14295 NUP50; nuclear pore complex protein Nup50 
E        100242090 nuclear pore complex protein NUP54	K14308 NUP54; nuclear pore complex protein Nup54 
E        100265039 nuclear pore complex protein NUP62	K14306 NUP62; nuclear pore complex protein Nup62 
E        100265724 nuclear pore complex protein NUP88	K14318 NUP88; nuclear pore complex protein Nup88 
E        100252000 nuclear pore complex protein NUP93A	K14309 NUP93; nuclear pore complex protein Nup93 
E        100249633 nuclear pore complex protein NUP98A	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        100257675 nuclear pore complex protein NUP96	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        100242984 nuclear pore complex protein NUP107 isoform X1	K14301 NUP107; nuclear pore complex protein Nup107 
E        100249432 nuclear pore complex protein NUP133	K14300 NUP133; nuclear pore complex protein Nup133 
E        100264071 uncharacterized protein LOC100264071	K14311 NUP188; nuclear pore complex protein Nup188 
E        100243944 nuclear pore complex protein NUP155 isoform X2	K14312 NUP155; nuclear pore complex protein Nup155 
E        100250223 nuclear pore complex protein NUP160	K14303 NUP160; nuclear pore complex protein Nup160 
E        100244686 nuclear pore complex protein NUP35	K14313 NUP35; nuclear pore complex protein Nup53 
E        100266475 nuclear pore complex protein NUP205 isoform X1	K14310 NUP205; nuclear pore complex protein Nup205 
E        100257580 nuclear pore complex protein GP210	K14314 NUP210; nuclear pore complex protein Nup210 
E        100245011 nuclear pore complex protein NUP214	K14317 NUP214; nuclear pore complex protein Nup214 
E        100855059 nuclear pore complex protein NUP58	K14307 NUPL1; nucleoporin p58/p45 
E        100243153 zinc finger CCCH domain-containing protein 16 isoform X2	K14321 NUPL2; nucleoporin-like protein 2 
E        100256014 uncharacterized protein LOC100256014	K14315 NDC1; nucleoporin NDC1 
E        100263869 protein SEH1 isoform X1	K14299 SEH1; nucleoporin SEH1 
E        100248313 aladin isoform X1	K14320 AAAS; aladin 
E        100245667 mRNA export factor GLE1	K18723 GLE1; nucleoporin GLE1 
D      Ran-mediated transport factors
E        100250818 GTP-binding nuclear protein Ran-3	K07936 RAN; GTP-binding nuclear protein Ran 
E        100266996 GTP-binding nuclear protein Ran-3	K07936 RAN; GTP-binding nuclear protein Ran 
E        100852411 GTP-binding nuclear protein Ran1-like	K07936 RAN; GTP-binding nuclear protein Ran 
E        100241512 plant UBX domain-containing protein 10	K18726 FAF2; FAS-associated factor 2 
E        100263375 plant UBX domain-containing protein 10	K18726 FAF2; FAS-associated factor 2 
E        100265402 cell division cycle protein 48 homolog	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        100258668 cell division cycle protein 48 homolog	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        100246467 cell division cycle protein 48 homolog	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        100245395 uncharacterized protein LOC100245395	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        100246881 uncharacterized protein LOC100246881 isoform X2	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        100258529 uncharacterized protein LOC100258529 isoform X1	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        100256288 protein EXPORTIN 1A	K14290 XPO1; exportin-1 
E        100254054 uncharacterized protein LOC100254054 isoform X1	K18460 XPO7; exportin-7 
E        100265499 uncharacterized protein LOC100265499 isoform X1	K18460 XPO7; exportin-7 
E        100244330 RAN GTPase-activating protein 1	K14319 RANGAP1; Ran GTPase-activating protein 1 
E        100259658 RAN GTPase-activating protein 2	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        100258939 eukaryotic translation initiation factor NCBP	K03259 EIF4E; translation initiation factor 4E 
E        100262414 eukaryotic translation initiation factor 4E-1 isoform X2	K03259 EIF4E; translation initiation factor 4E 
E        100259631 eukaryotic translation initiation factor isoform X2	K03259 EIF4E; translation initiation factor 4E 
E        100249159 eukaryotic initiation factor 4A-11	K03257 EIF4A; translation initiation factor 4A 
E        100261822 eukaryotic initiation factor 4A-8	K03257 EIF4A; translation initiation factor 4A 
E        100244028 uncharacterized protein LOC100244028	K03257 EIF4A; translation initiation factor 4A 
E        100244066 uncharacterized protein LOC100244066 isoform X2	K03257 EIF4A; translation initiation factor 4A 
E        100260481 eukaryotic translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        100261523 eukaryotic translation initiation factor 4G isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        100250837 eukaryotic translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        100253517 protein PIR isoform X1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        100250337 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        100240950 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        100245822 DEAD-box ATP-dependent RNA helicase 52C	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        100250155 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        100256726 uncharacterized protein LOC100256726 isoform X3	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        100254102 uncharacterized protein LOC100254102	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        100241923 polyadenylate-binding protein 2	K13126 PABPC; polyadenylate-binding protein 
E        100262903 polyadenylate-binding protein 2	K13126 PABPC; polyadenylate-binding protein 
E        100255846 polyadenylate-binding protein 8	K13126 PABPC; polyadenylate-binding protein 
E        100263065 polyadenylate-binding protein 3	K13126 PABPC; polyadenylate-binding protein 
E        100267544 polyadenylate-binding protein 7	K13126 PABPC; polyadenylate-binding protein 
E        100256670 polyadenylate-binding protein 6 isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        100266645 small ribosomal subunit protein cS22	K13126 PABPC; polyadenylate-binding protein 
E        100253599 DExH-box ATP-dependent RNA helicase DExH11	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        100252472 translation machinery-associated protein 22 isoform X2	K24272 DENR; density-regulated protein 
E        100264692 translation machinery-associated protein 22 isoform X2	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        100249740 partner of Y14 and mago	K14294 WIBG; partner of Y14 and mago 
E        100256940 glycine-rich RNA-binding protein blt801	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100248626 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100243393 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100258161 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100243489 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100263294 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100266260 UBP1-associated protein 2B isoform X1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100246013 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100265210 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100266965 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100240900 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100263471 heterogeneous nuclear ribonucleoprotein 1	K14411 MSI; RNA-binding protein Musashi 
E        100257917 heterogeneous nuclear ribonucleoprotein 1	K14411 MSI; RNA-binding protein Musashi 
E        100246008 heterogeneous nuclear ribonucleoprotein 1 isoform X2	K14411 MSI; RNA-binding protein Musashi 
E        100255821 uncharacterized protein LOC100255821	K14411 MSI; RNA-binding protein Musashi 
E        100267443 heterogeneous nuclear ribonucleoprotein 1 isoform X2	K14411 MSI; RNA-binding protein Musashi 
E        100247389 uncharacterized protein LOC100247389	K14411 MSI; RNA-binding protein Musashi 
E        132254414 heterogeneous nuclear ribonucleoprotein 1-like	K14411 MSI; RNA-binding protein Musashi 
E        100262342 uncharacterized protein LOC100262342 isoform X3	K14416 HBS1; elongation factor 1 alpha-like protein 
E        100241884 protein PELOTA 1	K06965 PELO; protein pelota 
E        100256390 protein PELOTA 1	K06965 PELO; protein pelota 
E        100853958 protein PELOTA 1-like	K06965 PELO; protein pelota 
E        100245696 polyadenylate-binding protein 2	K14396 PABPN1; polyadenylate-binding protein 2 
E        100242522 polyadenylate-binding protein 2	K14396 PABPN1; polyadenylate-binding protein 2 
E        100258174 polyadenylate-binding protein 3 isoform X2	K14396 PABPN1; polyadenylate-binding protein 2 
E        100855316 polyadenylate-binding protein 2 isoform X2	K14396 PABPN1; polyadenylate-binding protein 2 
E        100854880 DEAD-box ATP-dependent RNA helicase 38 isoform X4	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        100247027 DEAD-box ATP-dependent RNA helicase 38 isoform X2	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        100257270 DEAD-box ATP-dependent RNA helicase 38	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        100267056 uncharacterized protein LOC100267056	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        100249849 protein MODIFIER OF SNC1 11 isoform X1	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        100246785 transcription factor Pur-alpha 1	K21772 PURA; transcriptional activator protein Pur-alpha 
E        100258656 SAC3 family protein A isoform X1	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        100267567 eukaryotic peptide chain release factor subunit 1-3	K03265 ETF1; peptide chain release factor subunit 1 
E        100248954 eukaryotic peptide chain release factor subunit 1-3	K03265 ETF1; peptide chain release factor subunit 1 
E        100242471 eukaryotic peptide chain release factor subunit 1-3	K03265 ETF1; peptide chain release factor subunit 1 
E        100249117 uncharacterized protein LOC100249117	K03267 ERF3; peptide chain release factor subunit 3 
E        100264343 regulator of nonsense transcripts 1 homolog isoform X2	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        100258101 regulator of nonsense transcripts UPF2	K14327 UPF2; regulator of nonsense transcripts 2 
E        100852735 regulator of nonsense transcripts UPF3 isoform X4	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        100256981 serine/threonine-protein phosphatase PP2A-2 catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        100264866 serine/threonine-protein phosphatase PP2A-2 catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        100267243 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        100853524 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        100262164 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        100266203 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        100244069 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        100266437 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X2	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        100243351 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        100265267 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X2	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        100257641 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        100246385 serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        100250118 serine/threonine protein phosphatase 2A regulatory subunit B''beta	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        100247694 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        100253747 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        100245943 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        100252451 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        100241019 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        100258598 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        100247024 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        100250858 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        100250839 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        100260579 uncharacterized protein LOC100260579	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        100264171 nonsense-mediated mRNA decay factor SMG7	K14409 SMG7; protein SMG7 
E        100267161 nonsense-mediated mRNA decay factor SMG7	K14409 SMG7; protein SMG7 
E        100267175 uncharacterized protein LOC100267175 isoform X1	K18734 SMG8; protein SMG8 
E        100245949 uncharacterized protein LOC100245949 isoform X2	K18735 SMG9; protein SMG9 
E        100256726 uncharacterized protein LOC100256726 isoform X3	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        100254102 uncharacterized protein LOC100254102	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
C    Factors involved in mRNA localization
D      Cargo complex
E        100255113 pumilio homolog 24	K14844 PUF6; pumilio homology domain family member 6 
E        100266890 myosin-17 isoform X1	K10357 MYO5; myosin V 
E        100243893 myosin-17 isoform X1	K10357 MYO5; myosin V 
E        100266530 myosin-12 isoform X1	K10357 MYO5; myosin V 
E        100243373 myosin-9	K10357 MYO5; myosin V 
E        100241905 myosin-2	K10357 MYO5; myosin V 
E        100254166 myosin-15	K10357 MYO5; myosin V 
E        100259730 myosin-6 isoform X2	K10357 MYO5; myosin V 
E        100256590 myosin-6	K10357 MYO5; myosin V 
E        100265237 myosin-9 isoform X1	K10357 MYO5; myosin V 
E        100263418 uncharacterized protein LOC100263418	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
E        100259526 uncharacterized protein LOC100259526 isoform X2	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        100253453 uncharacterized protein LOC100253453 isoform X2	K13210 FUBP; far upstream element-binding protein 
E        100259454 uncharacterized protein LOC100259454	K13210 FUBP; far upstream element-binding protein 
E        100244821 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        100261589 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        100256979 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        100246711 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        100246571 elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
E        100264325 elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
E        100255407 probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1	K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 
D      Other mRNA localization factors
E        100253517 protein PIR isoform X1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        100258944 RNA-binding KH domain-containing protein RCF3 isoform X2	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100261236 KH domain-containing protein At4g18375	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100265365 RNA-binding KH domain-containing protein RCF3 isoform X3	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100251267 KH domain-containing protein HEN4	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100242733 flowering locus K homology domain	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100267715 KH domain-containing protein HEN4 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100256424 uncharacterized protein LOC100256424 isoform X5	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100261680 KH domain-containing protein At4g18375	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100253195 KH domain-containing protein At4g18375	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100261643 RNA-binding KH domain-containing protein PEPPER	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100266515 flowering locus K homology domain isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        100242157 RNA-binding KH domain-containing protein PEPPER	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        100244311 protein argonaute 10	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100250362 protein argonaute 5	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100256320 protein argonaute 1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100258447 protein argonaute 5	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100268067 protein argonaute PNH1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100264433 protein argonaute 7	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100242077 protein argonaute 7	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100251084 protein argonaute 2 isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100240850 protein argonaute 2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100249360 protein argonaute 2 isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100243183 protein argonaute 16	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100241029 protein argonaute 4	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100260151 protein argonaute 4A	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100268121 protein argonaute 4A isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        100258939 eukaryotic translation initiation factor NCBP	K03259 EIF4E; translation initiation factor 4E 
E        100262414 eukaryotic translation initiation factor 4E-1 isoform X2	K03259 EIF4E; translation initiation factor 4E 
E        100259631 eukaryotic translation initiation factor isoform X2	K03259 EIF4E; translation initiation factor 4E 
E        100264343 regulator of nonsense transcripts 1 homolog isoform X2	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        100250337 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        100240950 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        100245822 DEAD-box ATP-dependent RNA helicase 52C	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        100250155 DEAD-box ATP-dependent RNA helicase 37	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        100251721 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        100241111 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        100242198 protein decapping 5	K18749 LSM14; protein LSM14 
E        100244212 protein decapping 5	K18749 LSM14; protein LSM14 
E        100247679 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        100245339 transportin-1 isoform X3	K18752 TNPO1; transportin-1 
E        100250435 transportin-1 isoform X1	K18752 TNPO1; transportin-1 
E        100260579 uncharacterized protein LOC100260579	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        100264171 nonsense-mediated mRNA decay factor SMG7	K14409 SMG7; protein SMG7 
E        100267161 nonsense-mediated mRNA decay factor SMG7	K14409 SMG7; protein SMG7 
E        100262912 uncharacterized protein LOC100262912	K15308 TTP; tristetraprolin 
E        100242335 zinc finger CCCH domain-containing protein 15	K18753 ZFP36L; butyrate response factor 
E        100265124 zinc finger CCCH domain-containing protein 15	K18753 ZFP36L; butyrate response factor 
E        100256940 glycine-rich RNA-binding protein blt801	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100248626 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100243393 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100258161 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100243489 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100263294 UBP1-associated protein 2A	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100266260 UBP1-associated protein 2B isoform X1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100246013 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100265210 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100266965 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100240900 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        100243783 la-related protein 1C isoform X1	K18757 LARP1; la-related protein 1 
E        100243746 la-related protein 1C	K18757 LARP1; la-related protein 1 
E        100254731 la-related protein 1A	K18757 LARP1; la-related protein 1 
E        100258658 la-related protein 1A isoform X1	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        100249543 mRNA-decapping enzyme subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        100242537 mRNA-decapping enzyme-like protein isoform X1	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        100262105 mRNA-decapping enzyme-like protein isoform X2	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        100249828 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        100250857 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        100253870 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        100241738 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        100242667 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        100264807 sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        100259432 sm-like protein LSM36B	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        100855332 sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        100247782 sm-like protein LSM8 isoform X2	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        100266890 myosin-17 isoform X1	K10357 MYO5; myosin V 
E        100243893 myosin-17 isoform X1	K10357 MYO5; myosin V 
E        100266530 myosin-12 isoform X1	K10357 MYO5; myosin V 
E        100243373 myosin-9	K10357 MYO5; myosin V 
E        100241905 myosin-2	K10357 MYO5; myosin V 
E        100254166 myosin-15	K10357 MYO5; myosin V 
E        100259730 myosin-6 isoform X2	K10357 MYO5; myosin V 
E        100256590 myosin-6	K10357 MYO5; myosin V 
E        100265237 myosin-9 isoform X1	K10357 MYO5; myosin V 
E        100256600 tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        100258974 tubulin alpha-5 chain	K07374 TUBA; tubulin alpha 
E        100854977 tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        100247366 tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        100247081 tubulin alpha-4 chain	K07374 TUBA; tubulin alpha 
E        100260286 tubulin alpha-5 chain	K07374 TUBA; tubulin alpha 
E        100256945 uncharacterized protein LOC100256945 isoform X5	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        100261590 uncharacterized protein LOC100261590	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        100248449 probable NOT transcription complex subunit VIP2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        100263354 probable NOT transcription complex subunit VIP2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        100253711 uncharacterized protein LOC100253711 isoform X2	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        100267264 general negative regulator of transcription subunit 4	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        100265801 carbon catabolite repressor protein 4 homolog 1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        100267801 carbon catabolite repressor protein 4 homolog 1 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        100256249 carbon catabolite repressor protein 4 homolog 4 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        100248407 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100255985 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100250028 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100267180 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100244870 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100249306 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100253485 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100260740 DIS3-like exonuclease 2	K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] 
E        100255521 protein PAT1 homolog 2	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        100267869 protein PAT1 homolog isoform X1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        100259985 enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        100241190 enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        100258101 regulator of nonsense transcripts UPF2	K14327 UPF2; regulator of nonsense transcripts 2 
E        100852735 regulator of nonsense transcripts UPF3 isoform X4	K14328 UPF3; regulator of nonsense transcripts 3 
E        100248358 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        100248968 YTH domain-containing protein ECT1	K20102 YTHDF; YTH domain-containing family protein 
E        100241633 YTH domain-containing protein ECT4 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
E        100249242 YTH domain-containing protein ECT1	K20102 YTHDF; YTH domain-containing family protein 
E        100258644 YTH domain-containing protein ECT1 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
E        100854837 YTH domain-containing protein ECT4 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
E        100249606 YTH domain-containing protein ECT4 isoform X4	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        100260069 oligouridylate-binding protein 1B isoform X1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        100259344 oligouridylate-binding protein 1 isoform X1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        100245579 RNA-binding protein 208 isoform X1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        100241923 polyadenylate-binding protein 2	K13126 PABPC; polyadenylate-binding protein 
E        100262903 polyadenylate-binding protein 2	K13126 PABPC; polyadenylate-binding protein 
E        100255846 polyadenylate-binding protein 8	K13126 PABPC; polyadenylate-binding protein 
E        100263065 polyadenylate-binding protein 3	K13126 PABPC; polyadenylate-binding protein 
E        100267544 polyadenylate-binding protein 7	K13126 PABPC; polyadenylate-binding protein 
E        100256670 polyadenylate-binding protein 6 isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        100266645 small ribosomal subunit protein cS22	K13126 PABPC; polyadenylate-binding protein 
E        100255231 nuclear transport factor 2 isoform X1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        100258271 nuclear transport factor 2 isoform X1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        100264206 nuclear transport factor 2	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        100250757 nuclear transport factor 2 isoform X2	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        100249064 eukaryotic translation initiation factor 2A	K15026 EIF2A; translation initiation factor 2A 
E        100244090 eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        100249159 eukaryotic initiation factor 4A-11	K03257 EIF4A; translation initiation factor 4A 
E        100261822 eukaryotic initiation factor 4A-8	K03257 EIF4A; translation initiation factor 4A 
E        100244028 uncharacterized protein LOC100244028	K03257 EIF4A; translation initiation factor 4A 
E        100244066 uncharacterized protein LOC100244066 isoform X2	K03257 EIF4A; translation initiation factor 4A 
E        100255368 eukaryotic initiation factor 4A-3	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        100260481 eukaryotic translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        100261523 eukaryotic translation initiation factor 4G isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        100250837 eukaryotic translation initiation factor	K03260 EIF4G; translation initiation factor 4G 
E        100249027 small ribosomal subunit protein RACK1	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        100243995 uncharacterized protein LOC100243995	K18404 TDRD3; tudor domain-containing protein 3 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        100242537 mRNA-decapping enzyme-like protein isoform X1	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        100262105 mRNA-decapping enzyme-like protein isoform X2	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        100249543 mRNA-decapping enzyme subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        100251721 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        100241111 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        100259985 enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        100241190 enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        100255521 protein PAT1 homolog 2	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        100267869 protein PAT1 homolog isoform X1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        100249828 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        100250857 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        100253870 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        100241738 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        100242667 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        100264807 sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        100259432 sm-like protein LSM36B	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        100855332 sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        100247782 sm-like protein LSM8 isoform X2	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        100263222 5'-3' exoribonuclease 3 isoform X2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        100260845 5'-3' exoribonuclease 3	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        100253751 5'-3' exoribonuclease 4	K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
C    3'-5' decay
D      Core exosome factors
E        100263947 uncharacterized protein LOC100263947	K07573 CSL4; exosome complex component CSL4 
E        100244305 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        100241656 uncharacterized protein LOC100241656	K03681 RRP40; exosome complex component RRP40 
E        100265488 exosome complex component RRP41 homolog	K11600 RRP41; exosome complex component RRP41 
E        100262803 exosome complex exonuclease RRP46 homolog	K12590 RRP46; exosome complex component RRP46 
E        100251840 exosome complex component RRP41-like	K12587 MTR3; exosome complex component MTR3 
E        100261229 uncharacterized protein LOC100261229	K12589 RRP42; exosome complex component RRP42 
E        100253817 uncharacterized protein LOC100253817	K12586 RRP43; exosome complex component RRP43 
E        100265860 exosome complex component RRP45A isoform X1	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        100267912 exosome complex exonuclease RRP44 homolog A	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        100265580 protein RRP6-like 2	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        100243947 uncharacterized protein LOC100243947	K12592 C1D; exosome complex protein LRP1 
E        100267367 uncharacterized protein LOC100267367 isoform X2	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
D      TRAMP complex
E        100259006 uncharacterized protein LOC100259006	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        100258243 DExH-box ATP-dependent RNA helicase DExH9 isoform X1	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
E        100246661 DExH-box ATP-dependent RNA helicase DExH10 isoform X1	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        100253599 DExH-box ATP-dependent RNA helicase DExH11	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        100259801 tetratricopeptide repeat protein SKI3 isoform X2	K12600 SKI3; superkiller protein 3 
E        100257752 WD repeat-containing protein VIP3	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        100265801 carbon catabolite repressor protein 4 homolog 1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        100267801 carbon catabolite repressor protein 4 homolog 1 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        100256249 carbon catabolite repressor protein 4 homolog 4 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        100256945 uncharacterized protein LOC100256945 isoform X5	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        100261590 uncharacterized protein LOC100261590	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        100248449 probable NOT transcription complex subunit VIP2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        100263354 probable NOT transcription complex subunit VIP2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        100253711 uncharacterized protein LOC100253711 isoform X2	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        100267264 general negative regulator of transcription subunit 4	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        100248407 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100255985 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100250028 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100267180 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100244870 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100249306 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100253485 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        100265941 uncharacterized protein LOC100265941 isoform X1	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        104880715 uncharacterized protein LOC104880715	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        100267046 uncharacterized protein LOC100267046	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        100252496 uncharacterized protein LOC100252496	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
E        100260023 ABC transporter I family member 19	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        100259555 ABC transporter I family member 20 isoform X1	K12608 CAF16; CCR4-NOT complex subunit CAF16 
D      Pan complex
D      Other 3'-5' decay factors
E        100252435 uncharacterized CRM domain-containing protein At3g25440, chloroplastic	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        100258377 poly(A)-specific ribonuclease PARN	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        100855155 poly(A)-specific ribonuclease PARN-like	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        100252028 DExH-box ATP-dependent RNA helicase DExH1 isoform X1	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        100244105 DExH-box ATP-dependent RNA helicase DExH3	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        100251493 DExH-box ATP-dependent RNA helicase DExH3 isoform X1	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        100264518 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        100260829 DExH-box ATP-dependent RNA helicase DExH6	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        100853630 3'-5' exonuclease eri1	K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] 
E        100263388 uncharacterized protein LOC100263388 isoform X1	K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] 
E        100255247 uncharacterized protein LOC100255247	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        100245681 protein RST1	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        100251263 oligoribonuclease isoform X1	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
E        100262056 uncharacterized protein LOC100262056	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
D      Other RNA degradosome components
E        100242642 enolase 1	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        100265663 cytosolic enolase 3	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        100254950 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        100256026 enolase 1, chloroplastic	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        100265692 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        100257571 polyribonucleotide nucleotidyltransferase 2, mitochondrial	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        100853702 ATP-dependent 6-phosphofructokinase 5, chloroplastic	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        100251605 ATP-dependent 6-phosphofructokinase 2	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        100243946 ATP-dependent 6-phosphofructokinase 3	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        100245746 ATP-dependent 6-phosphofructokinase 6	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        100242301 ATP-dependent 6-phosphofructokinase 5, chloroplastic	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        100242517 ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X2	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        100248447 heat shock 70 kDa protein, mitochondrial	K04043 dnaK; molecular chaperone DnaK 
E        100250929 heat shock 70 kDa protein, mitochondrial isoform X1	K04043 dnaK; molecular chaperone DnaK 
E        100266920 chaperonin CPN60-like 2, mitochondrial isoform X1	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        100263832 ruBisCO large subunit-binding protein subunit beta, chloroplastic	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        100251252 chaperonin 60 subunit beta 4, chloroplastic	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        100261815 ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X2	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        100244356 chaperonin CPN60-2, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        100244305 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        100263947 uncharacterized protein LOC100263947	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        100265488 exosome complex component RRP41 homolog	K11600 RRP41; exosome complex component RRP41 
E        100261229 uncharacterized protein LOC100261229	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
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#Last updated: April 25, 2024