+F Repair protein KO
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DNA Repair and Recombination Proteins - Xanthomonas citri pv. fuscans
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D XFF4834R_chr18040 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D XFF4834R_chr30200 phr; putative deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E XFF4834R_chr37170 ung; putative uracil-DNA-glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E XFF4834R_chr24330 Putative 3-methyl adenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E XFF4834R_chr25770 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E XFF4834R_chr29310 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
D XFF4834R_chr12940 putative secreted protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D XFF4834R_chr07930 putative pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XFF4834R_chr21500 putative nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XFF4834R_chr38010 dut; probable deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D XFF4834R_chr18040 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D XFF4834R_chr30200 phr; putative deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D XFF4834R_chr31680 hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E XFF4834R_chr37170 ung; putative uracil-DNA-glycosylase (UDG) K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E XFF4834R_chr36010 putative uracil DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E XFF4834R_chr33080 Putative DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E XFF4834R_chr18050 adA; Methylated-DNA--protein-cysteine methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E XFF4834R_chr24330 Putative 3-methyl adenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E XFF4834R_chr25770 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E XFF4834R_chr17200 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E XFF4834R_chr41530 mutM; probable formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E XFF4834R_chr06170 putative DNA-formamidopyrimidine glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E XFF4834R_chr29310 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E XFF4834R_chr21330 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E XFF4834R_chr37890 putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E XFF4834R_chr40400 xthA; probable exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E XFF4834R_chr17580 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E XFF4834R_chr20110 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E XFF4834R_chr28790 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E XFF4834R_chr39790 polA; probable DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XFF4834R_chr33570 putative UvrABC system protein A (excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A
E XFF4834R_chr32930 uvrA; probable UvrABC system protein A (excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A
E XFF4834R_chr26570 uvrB; probable UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E XFF4834R_chr21980 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E XFF4834R_chr25820 cho; nucleotide excision repair endonuclease K05984 cho; excinuclease Cho [EC:3.1.25.-]
E XFF4834R_chr40210 uvrD; probable DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E XFF4834R_chr39790 polA; probable DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E XFF4834R_chr28790 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F XFF4834R_chr09710 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F XFF4834R_chr09720 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F XFF4834R_chr10020 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F XFF4834R_chr12500 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F XFF4834R_chr17700 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E XFF4834R_chr32330 mutS; putative DNA mismatch repair protein, MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E XFF4834R_chr24160 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E XFF4834R_chr29140 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E XFF4834R_chr24210 xseA; exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E XFF4834R_chr18710 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E XFF4834R_chr30910 dnaE; probable DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E XFF4834R_chr00020 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E XFF4834R_chr34530 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E XFF4834R_chr18530 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E XFF4834R_chr11250 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E XFF4834R_chr10710 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E XFF4834R_chr11030 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E XFF4834R_chr28790 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E XFF4834R_chr40210 uvrD; probable DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E XFF4834R_chr17340 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E XFF4834R_chr19030 DNA endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E XFF4834R_chr42150 recB; putative exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E XFF4834R_chr42160 recC; probable exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E XFF4834R_chr42140 recD; putative exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E XFF4834R_chr27710 recA; Recombinase A K03553 recA; recombination protein RecA
E XFF4834R_chr14790 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
E XFF4834R_chr14820 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E XFF4834R_chr14780 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E XFF4834R_chr37100 priA; probable primosomal protein N' (ATP-dependent helicase priA) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E XFF4834R_chr29140 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
E XFF4834R_chr27710 recA; Recombinase A K03553 recA; recombination protein RecA
E XFF4834R_chr32720 radA; probable DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E XFF4834R_chr00030 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
E XFF4834R_chr12600 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E XFF4834R_chr20110 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E XFF4834R_chr31740 recO; probable DNA repair protein, RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E XFF4834R_chr11050 recR; recombination protein RecR K06187 recR; recombination protein RecR
E XFF4834R_chr29970 recN; probable DNA repair protein, RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E XFF4834R_chr40980 rdgC; probable recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
E XFF4834R_chr14790 ruvA; Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA
E XFF4834R_chr14820 ruvB; Holliday junction DNA helicase B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E XFF4834R_chr14780 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E XFF4834R_chr27270 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E XFF4834R_chr01210 Putative DNA repair protein K10979 ku; DNA end-binding protein Ku
E XFF4834R_chr24250 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F XFF4834R_chr28750 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F XFF4834R_chr00040 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F XFF4834R_chr36990 topA; probable DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F XFF4834R_chr00370 putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F XFF4834R_chr10620 hupB; histone-like protein hu K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F XFF4834R_chr20110 recJ; Single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F XFF4834R_chr31740 recO; probable DNA repair protein, RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F XFF4834R_chr11050 recR; recombination protein RecR K06187 recR; recombination protein RecR
F XFF4834R_chr28790 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F XFF4834R_chr05200 fis; global DNA-binding transcriptional dual regulator (factor-for-inversion stimulation protein) K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F XFF4834R_chr26250 ihfA; probable integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F XFF4834R_chr23000 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F XFF4834R_chr29140 sbcB; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F XFF4834R_chr15080 recQ; DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F XFF4834R_chr33570 putative UvrABC system protein A (excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A
F XFF4834R_chr32930 uvrA; probable UvrABC system protein A (excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A
F XFF4834R_chr26570 uvrB; probable UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
F XFF4834R_chr34630 putative DNA-binding protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D XFF4834R_chr35190 dinB; probable DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D XFF4834R_chr27710 recA; Recombinase A K03553 recA; recombination protein RecA
D XFF4834R_chr33450 lexA2; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D XFF4834R_chr27720 lexA; DNA-binding transcriptional repressor of SOS regulon, LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D XFF4834R_chr29970 recN; probable DNA repair protein, RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D XFF4834R_chr33440 Hypothetical conserved protein K14160 imuA; protein ImuA
D XFF4834R_chr33430 hypothetical DNA Polymerase Y-family K14161 imuB; protein ImuB
D XFF4834R_chr33410 putative error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D XFF4834R_chr17340 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D XFF4834R_chr27700 recX; probable regulatory protein Recx K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D XFF4834R_chr41470 rep; probable ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D XFF4834R_chr15250 putative ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D XFF4834R_chr38970 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D XFF4834R_chr24340 lhr; putative ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D XFF4834R_chr31610 putative ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D XFF4834R_chr07930 putative pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XFF4834R_chr21500 putative nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D XFF4834R_chr38010 dut; probable deoxyuridinetriphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D XFF4834R_chr39410 nrdA; probable secreted ribonucleoside-diphosphate reductase 2, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D XFF4834R_chr39400 nrdB; probable ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024