+D GENES KO #

  KEGG Orthology (KO) - Yersinia intermedia

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:yin00010] D CH53_504 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CH53_2139 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CH53_1887 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CH53_2495 pfkB; phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D CH53_1308 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CH53_1894 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D CH53_2607 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CH53_1889 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CH53_3847 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CH53_2606 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CH53_3168 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CH53_1090 putative phosphoglycerate mutase gpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CH53_1872 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CH53_949 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CH53_4108 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CH53_3809 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CH53_4120 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D CH53_995 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CH53_994 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_4046 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CH53_3264 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CH53_3871 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CH53_2284 zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D CH53_2515 eutG; ethanolamine utilization protein EutG K04022 eutG; alcohol dehydrogenase D CH53_1439 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CH53_3170 galM; galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D CH53_425 histidine phosphatase super family protein K01085 agp; glucose-1-phosphatase [EC:3.1.3.10] D CH53_1811 HAD hydrolase, IA, variant 3 family protein K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D CH53_3119 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CH53_3846 aldose 1-epimerase family protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D CH53_1555 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D CH53_1527 hypothetical protein K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_714 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_488 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_3701 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_1721 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_464 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_275 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_527 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CH53_4424 ptsG; PTS system glucose-specific EIICB component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D CH53_2499 PTS system, maltose and glucose-specific subfamily, IIC component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_3956 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_465 PTS system, glucose-like IIB component domain protein K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-] C 00020 Citrate cycle (TCA cycle) [PATH:yin00020] D CH53_3137 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D CH53_3911 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D CH53_990 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D CH53_4399 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D CH53_3142 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D CH53_3143 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_3145 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D CH53_3144 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CH53_3140 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CH53_3141 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CH53_3138 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CH53_3139 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D CH53_1353 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CH53_1354 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CH53_1355 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D CH53_1356 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D CH53_856 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D CH53_306 hydrolyase, tartrate beta subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D CH53_3961 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D CH53_1302 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CH53_1555 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D CH53_995 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CH53_994 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CH53_4046 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:yin00030] D CH53_2139 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CH53_3811 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D CH53_3182 lactonase, 7-bladed beta-propeller family protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D CH53_3325 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D CH53_1539 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CH53_2604 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CH53_829 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CH53_830 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CH53_1082 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D CH53_2612 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D CH53_3042 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CH53_212 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D CH53_1118 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D CH53_4015 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D CH53_1790 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D CH53_1116 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D CH53_3119 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CH53_1261 phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D CH53_3760 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CH53_360 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D CH53_3812 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D CH53_4237 SMP-30/Gluconolaconase/LRE-like region family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D CH53_1704 ghrB; glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D CH53_366 carbohydrate kinase, thermoresistant glucokinase family protein K00851 idnK; gluconokinase [EC:2.7.1.12] D CH53_1587 carbohydrate kinase, thermoresistant glucokinase family protein K00851 idnK; gluconokinase [EC:2.7.1.12] D CH53_1621 pfkB carbohydrate kinase family protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D CH53_2607 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CH53_1308 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CH53_1894 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D CH53_1887 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CH53_2495 pfkB; phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:yin00040] D CH53_1141 pemA; pectinesterase A K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D CH53_1625 pelY; periplasmic pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D CH53_4262 periplasmic pectate lyase family protein K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9] D CH53_4272 ogl; oligogalacturonate lyase K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6] D CH53_4259 cupin domain protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25] D CH53_4260 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D CH53_4261 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D CH53_2299 glucuronate isomerase family protein K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D CH53_2300 mannitol dehydrogenase Rossmann domain protein K00041 uxaB; tagaturonate reductase [EC:1.1.1.58] D CH53_2301 hypothetical protein K01685 uxaA; altronate hydrolase [EC:4.2.1.7] D CH53_251 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D CH53_3953 putative mandelate racemase / muconate lactonizing enzyme K08323 rspA; mannonate dehydratase [EC:4.2.1.8] D CH53_252 mannitol dehydrogenase Rossmann domain protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D CH53_3868 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D CH53_3323 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_3324 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_4238 dlgD; 2,3-diketo-L-gulonate reductase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130] D CH53_855 hypothetical protein K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D CH53_4239 lyx; L-xylulose/3-keto-L-gulonate kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D CH53_4240 sgbH; 3-keto-L-gulonate-6-phosphate decarboxylase sgbH K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85] D CH53_4241 xylose isomerase-like TIM barrel family protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D CH53_854 xylose isomerase-like TIM barrel family protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D CH53_847 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D CH53_3921 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D CH53_1539 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CH53_3943 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D CH53_3944 araB; ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16] D CH53_1666 xylB; xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D CH53_1665 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D CH53_1103 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D CH53_1105 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D CH53_2181 fGGY; FGGY carbohydrate kinase domain-containing protein K00875 rbtK; D-ribulokinase [EC:2.7.1.47] D CH53_843 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3] D CH53_844 fucK; L-fuculokinase K00879 fucK; L-fuculokinase [EC:2.7.1.51] D CH53_841 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:yin00051] D CH53_2818 glucokinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CH53_2524 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CH53_1135 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CH53_3960 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D CH53_3308 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8] D CH53_3307 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CH53_82 nucleotidyl transferase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CH53_3319 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D CH53_843 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3] D CH53_844 fucK; L-fuculokinase K00879 fucK; L-fuculokinase [EC:2.7.1.51] D CH53_841 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D CH53_1104 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14] D CH53_1103 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D CH53_1105 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D CH53_1887 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CH53_2495 pfkB; phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D CH53_1308 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CH53_1894 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D CH53_1692 mtlD; mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D CH53_610 srlD; sorbitol-6-phosphate 2-dehydrogenase K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140] D CH53_871 zinc-binding dehydrogenase family protein K19956 sorE; L-sorbose 1-phosphate reductase [EC:1.1.1.-] D CH53_233 pfkB; phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D CH53_1665 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D CH53_2607 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CH53_1889 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CH53_3320 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D CH53_3036 alsK; D-allose kinase K00881 alsK; allose kinase [EC:2.7.1.55] D CH53_3042 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CH53_3037 rpe; ribulose-phosphate 3-epimerase K17195 alsE; D-allulose-6-phosphate 3-epimerase [EC:5.1.3.-] D CH53_232 PTS system, Fru family, IIB component domain protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D CH53_4353 manX; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CH53_4354 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component D CH53_4355 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component D CH53_3459 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D CH53_1693 mtlA; PTS system mannitol-specific EIICBA component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D CH53_388 HAD hydrolase, IA, variant 1 family protein K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50] D CH53_4258 yniC; phosphatase YniC K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] D CH53_609 PTS system glucitol/sorbitol-specific IIA component family protein K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D CH53_608 srlE; glucitol/sorbitol-specific phosphotransferase enzyme IIB component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198] D CH53_607 srlA; glucitol/sorbitol permease IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component D CH53_867 PTS system, mannose/fructose/sorbose family, IIA component domain protein K02812 sorF; sorbose PTS system EIIA component [EC:2.7.1.206] D CH53_868 sorB; sorbose-specific phosphotransferase enzyme IIB component K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206] D CH53_869 PTS system, mannose/fructose/sorbose, IIC component family protein K02814 sorA; sorbose PTS system EIIC component D CH53_870 PTS system, mannose/fructose/sorbose, IID component family protein K02815 sorM; sorbose PTS system EIID component C 00052 Galactose metabolism [PATH:yin00052] D CH53_3170 galM; galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D CH53_3171 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D CH53_3172 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D CH53_2914 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CH53_3173 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CH53_3323 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_3324 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_3119 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CH53_504 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CH53_3523 glycosyl hydrolases 2 family protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CH53_2990 melA; alpha-galactosidase K07406 melA; alpha-galactosidase [EC:3.2.1.22] D CH53_1887 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CH53_2495 pfkB; phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D CH53_246 class II aldolase, tagatose bisphosphate family K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D CH53_239 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ D CH53_1713 dgoD; D-galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6] D CH53_1715 2-keto-3-deoxy-galactonokinase family protein K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D CH53_1714 nitronate monooxygenase family protein K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] D CH53_2526 glycosyl hydrolases 43 family protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D CH53_2528 sucrose-6-phosphate hydrolase family protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D CH53_1138 sucrose-6-phosphate hydrolase family protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D CH53_2826 hypothetical protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CH53_2646 glycosyl hydrolases 31 family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CH53_2357 PTS system fructose IIA component family protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D CH53_243 PTS system fructose IIA component family protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D CH53_240 PTS system, mannose/fructose/sorbose, IIB component family protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D CH53_241 PTS system sorbose-specific iic component family protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D CH53_242 PTS system mannose/fructose/sorbose IID component family protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D CH53_244 nagA; N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25] D CH53_245 putative tagatose-6-phosphate ketose/aldose isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] D CH53_2360 agaB; galactosamine-specific PTS system enzyme IIB component K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-] D CH53_2359 PTS system sorbose-specific iic component family protein K10985 agaC; galactosamine PTS system EIIC component D CH53_2358 PTS system, mannose/fructose/sorbose, IID component family protein K10986 agaD; galactosamine PTS system EIID component C 00053 Ascorbate and aldarate metabolism [PATH:yin00053] D CH53_3868 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D CH53_4237 SMP-30/Gluconolaconase/LRE-like region family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D CH53_394 ptsN1; phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CH53_395 PTS system, Lactose/Cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CH53_396 PTS system sugar-specific permease component family protein K03475 ulaA; ascorbate PTS system EIIC component D CH53_4240 sgbH; 3-keto-L-gulonate-6-phosphate decarboxylase sgbH K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85] D CH53_4241 xylose isomerase-like TIM barrel family protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D CH53_854 xylose isomerase-like TIM barrel family protein K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D CH53_847 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D CH53_3921 araD; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D CH53_4238 dlgD; 2,3-diketo-L-gulonate reductase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130] D CH53_855 hypothetical protein K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D CH53_4239 lyx; L-xylulose/3-keto-L-gulonate kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D CH53_1379 garL; 2-dehydro-3-deoxyglucarate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20] D CH53_2950 SMP-30/Gluconolaconase/LRE-like region family protein K13874 araB; L-arabinonolactonase [EC:3.1.1.15] D CH53_1375 garD; galactarate dehydratase K01708 garD; galactarate dehydratase [EC:4.2.1.42] C 00500 Starch and sucrose metabolism [PATH:yin00500] D CH53_1137 PTS system, sucrose-specific IIBC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D CH53_2526 glycosyl hydrolases 43 family protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D CH53_2528 sucrose-6-phosphate hydrolase family protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D CH53_1138 sucrose-6-phosphate hydrolase family protein K01193 INV; beta-fructofuranosidase [EC:3.2.1.26] D CH53_2826 hypothetical protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CH53_2646 glycosyl hydrolases 31 family protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CH53_3323 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_3324 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_1635 bcsA; cellulose synthase catalytic subunit UDP-forming K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D CH53_713 chbA; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CH53_3702 chbA; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CH53_1726 PTS system, Lactose/Cellobiose specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CH53_716 chbB; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CH53_1722 PTS system, Lactose/Cellobiose specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CH53_3699 PTS system, Lactose/Cellobiose specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CH53_715 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D CH53_1723 PTS system, lactose/cellobiose IIC component family protein K02761 celB; cellobiose PTS system EIIC component D CH53_3700 PTS system, lactose/cellobiose IIC component family protein K02761 celB; cellobiose PTS system EIIC component D CH53_1527 hypothetical protein K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_714 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_488 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_3701 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_1721 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_464 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_275 glycosyl hydrolase 1 family protein K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CH53_1578 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D CH53_3516 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D CH53_1577 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D CH53_1580 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D CH53_1569 glgP; glycogen/starch/alpha-glucan phosphorylases family protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D CH53_1576 glgP; glycogen/starch/alpha-glucan phosphorylases family protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D CH53_86 glgP; glycogen/starch/alpha-glucan phosphorylases family protein K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D CH53_1579 glgX; glycogen debranching enzyme GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196] D CH53_3615 alpha amylase, catalytic domain protein K01176 AMY; alpha-amylase [EC:3.2.1.1] D CH53_1705 alpha amylase, catalytic domain protein K01176 AMY; alpha-amylase [EC:3.2.1.1] D CH53_1568 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D CH53_527 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CH53_2499 PTS system, maltose and glucose-specific subfamily, IIC component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_3956 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_2502 PTS system, alpha-glucoside-specific IIBC component domain protein K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-] D CH53_2501 aglB; 6-phospho-alpha-glucosidase K01232 glvA; maltose-6'-phosphate glucosidase [EC:3.2.1.122] D CH53_2233 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D CH53_2234 treC; alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93] D CH53_3119 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CH53_504 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CH53_2139 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CH53_2818 glucokinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CH53_2524 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CH53_1135 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:yin00520] D CH53_4419 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D CH53_1384 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D CH53_3102 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CH53_527 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CH53_3098 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CH53_4411 glucokinase family protein K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59] D CH53_3096 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D CH53_3097 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D CH53_2818 glucokinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CH53_2524 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CH53_1135 pfkB carbohydrate kinase family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D CH53_1766 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CH53_1285 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D CH53_1767 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CH53_1387 phosphotransferase system, EIIC family protein K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192] D CH53_1386 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D CH53_673 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D CH53_4082 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D CH53_2258 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CH53_2080 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CH53_2498 nitronate monooxygenase family protein K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D CH53_1974 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CH53_1975 nucleotide sugar dehydrogenase family protein K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D CH53_4133 3-beta hydroxysteroid dehydrogenase/isomerase family protein K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D CH53_4135 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D CH53_4134 glycosyltransferase like 2 family protein K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D CH53_4132 polysaccharide deacetylase family protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D CH53_4424 ptsG; PTS system glucose-specific EIICB component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D CH53_2499 PTS system, maltose and glucose-specific subfamily, IIC component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_3956 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_504 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CH53_3119 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CH53_3323 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_3324 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_3868 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D CH53_3171 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D CH53_3172 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D CH53_2914 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CH53_3173 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CH53_4353 manX; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CH53_4354 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component D CH53_4355 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component D CH53_2139 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CH53_3960 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D CH53_3308 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8] D CH53_82 nucleotidyl transferase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CH53_3307 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CH53_3319 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D CH53_3320 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D CH53_1578 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D CH53_3516 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:yin00620] D CH53_1439 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CH53_4046 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CH53_995 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CH53_994 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_1390 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CH53_161 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CH53_3871 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CH53_2513 aldehyde dehydrogenase family protein K04021 eutE; aldehyde dehydrogenase D CH53_3264 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CH53_2284 zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D CH53_2515 eutG; ethanolamine utilization protein EutG K04022 eutG; alcohol dehydrogenase D CH53_391 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CH53_392 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D CH53_2510 pta; phosphate acetyltransferase K04020 eutD; phosphotransacetylase D CH53_4108 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CH53_3809 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CH53_2736 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CH53_2194 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CH53_2193 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CH53_410 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CH53_104 acylphosphatase family protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D CH53_185 thiamine pyrophosphate enzyme, central domain protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D CH53_4042 ldhA; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D CH53_3208 FAD binding domain protein K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D CH53_4093 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D CH53_766 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D CH53_135 beta-lactamase superfamily domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D CH53_3774 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D CH53_1704 ghrB; glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D CH53_3292 malic enzyme, NAD binding domain protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D CH53_551 malic enzyme, NAD binding domain protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D CH53_1302 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CH53_856 hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D CH53_306 hydrolyase, tartrate beta subunit/fumarate, Fe-S type domain protein K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D CH53_3961 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D CH53_1353 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CH53_1354 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CH53_1355 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D CH53_1356 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D CH53_1910 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CH53_1555 pckA; phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D CH53_4120 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D CH53_2121 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CH53_1035 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:yin00630] D CH53_2122 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D CH53_1439 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CH53_2121 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D CH53_1302 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CH53_3137 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D CH53_3911 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D CH53_990 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CH53_4252 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D CH53_312 methylaspartate mutase, E subunit K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1] D CH53_310 mamA; methylaspartate mutase, S subunit K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1] D CH53_313 methylaspartate ammonia-lyase K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2] D CH53_352 katA; catalase K03781 katE; catalase [EC:1.11.1.6] D CH53_3774 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D CH53_1704 ghrB; glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D CH53_1538 gph; sugar (Glycoside-Pentoside-Hexuronide) transporter K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D CH53_1809 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CH53_654 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CH53_2622 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D CH53_2620 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_2621 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D CH53_70 gcl; glyoxylate carboligase K01608 gcl; tartronate-semialdehyde synthase [EC:4.1.1.47] D CH53_69 hyi; hydroxypyruvate isomerase K01816 hyi; hydroxypyruvate isomerase [EC:5.3.1.22] D CH53_1378 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D CH53_68 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] D CH53_64 glxK; glycerate kinase 1 K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CH53_1377 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CH53_840 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77] D CH53_3812 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D CH53_1680 fdnG; formate dehydrogenase-N alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D CH53_1681 molybdopterin oxidoreductase Fe4S4 domain protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D CH53_1679 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D CH53_1678 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D CH53_3864 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D CH53_3739 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:yin00640] D CH53_1439 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CH53_391 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CH53_1391 ackA; acetate kinase K00932 tdcD; propionate kinase [EC:2.7.2.15] D CH53_3350 ackA; acetate kinase K19697 pduW; propionate kinase [EC:2.7.2.15] D CH53_392 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D CH53_3360 propanediol utilization PduL family protein K13923 pduL; phosphate propanoyltransferase [EC:2.3.1.222] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_1390 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CH53_161 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CH53_2198 putative quinone oxidoreductase YhdH K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CH53_2736 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CH53_2194 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CH53_2193 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CH53_410 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CH53_4254 enoyl-CoA hydratase/isomerase family protein K11264 scpB; methylmalonyl-CoA decarboxylase [EC:4.1.1.-] D CH53_4252 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D CH53_4256 succinate CoA transferase family protein K22214 scpC; propionyl-CoA:succinyl-CoA transferase [EC:2.8.3.27] D CH53_3144 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CH53_3145 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D CH53_1598 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D CH53_990 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D CH53_109 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D CH53_2368 yqhD; alcohol dehydrogenase YqhD K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] D CH53_1151 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D CH53_840 fucO; lactaldehyde reductase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77] D CH53_3367 pduC; propanediol dehydratase large subunit K01699 pduC; propanediol dehydratase large subunit [EC:4.2.1.28] D CH53_3366 pduD; propanediol dehydratase medium subunit K13919 pduD; propanediol dehydratase medium subunit [EC:4.2.1.28] D CH53_3365 pduE; propanediol dehydratase small subunit K13920 pduE; propanediol dehydratase small subunit [EC:4.2.1.28] D CH53_3355 iron-containing alcohol dehydrogenase family protein K13921 pduQ; 1-propanol dehydrogenase D CH53_3356 aldehyde dehydrogenase family protein K13922 pduP; propionaldehyde dehydrogenase [EC:1.2.1.87] C 00650 Butanoate metabolism [PATH:yin00650] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CH53_1737 NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D CH53_2127 atoD; acetate CoA-transferase subunit alpha K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D CH53_2126 atoA; acetate CoA-transferase subunit beta K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D CH53_3871 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CH53_3140 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CH53_3141 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CH53_3138 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CH53_3139 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D CH53_1353 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CH53_1354 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CH53_1355 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D CH53_1356 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D CH53_48 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CH53_2212 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CH53_196 gabD; aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CH53_1390 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CH53_161 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CH53_4046 nifJ; ferredoxin (flavodoxin) oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CH53_4006 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1031 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1584 alsS; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1950 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_4007 ilvN; acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CH53_1030 ilvN; acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CH53_1951 ilvM; acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D CH53_1583 budA; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] C 00660 C5-Branched dibasic acid metabolism [PATH:yin00660] D CH53_4006 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1031 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1584 alsS; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1950 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_4007 ilvN; acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CH53_1030 ilvN; acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CH53_1951 ilvM; acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D CH53_1583 budA; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] D CH53_3144 sucC; succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D CH53_3145 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D CH53_313 methylaspartate ammonia-lyase K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2] D CH53_312 methylaspartate mutase, E subunit K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1] D CH53_310 mamA; methylaspartate mutase, S subunit K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1] D CH53_1037 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D CH53_1038 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D CH53_1036 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:yin00562] D CH53_649 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D CH53_3517 appA; periplasmic AppA protein K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] D CH53_1593 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D CH53_1599 xylose isomerase-like TIM barrel family protein K06606 iolI; 2-keto-myo-inositol isomerase [EC:5.3.99.11] D CH53_1592 iolE; myo-inosose-2 dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44] D CH53_1594 iolD; 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D CH53_1597 iolB; 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D CH53_1595 iolC; 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D CH53_1598 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D CH53_1889 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:yin00190] D CH53_382 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D CH53_381 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D CH53_380 nuoD; NADH dehydrogenase (quinone), D subunit K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2] D CH53_379 nuoE; NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D CH53_378 nuoF; NADH oxidoreductase (quinone), F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D CH53_377 nuoG; NADH dehydrogenase (quinone), G subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D CH53_376 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D CH53_375 NADH-quinone oxidoreductase, chain I family protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D CH53_374 nuoJ; NADH-quinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D CH53_373 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D CH53_372 proton-translocating NADH-quinone oxidoreductase, chain L family protein K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D CH53_371 nuoM; NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D CH53_370 proton-translocating NADH-quinone oxidoreductase, chain N family protein K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D CH53_4417 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D CH53_3140 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CH53_3141 sdhB; succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CH53_3138 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D CH53_3139 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D CH53_1353 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CH53_1354 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CH53_1355 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D CH53_1356 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D CH53_2851 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D CH53_2852 cyoD; cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D CH53_2853 cyoC; cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D CH53_2854 cyoB; cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D CH53_2855 cyoA; ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D CH53_3730 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D CH53_3147 cydA; cytochrome d ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D CH53_3729 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D CH53_3148 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D CH53_3149 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D CH53_1771 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CH53_1769 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CH53_1770 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CH53_1772 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CH53_1768 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CH53_1775 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CH53_1773 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CH53_1774 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CH53_1309 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D CH53_592 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:yin00680] D CH53_3264 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CH53_3263 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D CH53_1680 fdnG; formate dehydrogenase-N alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D CH53_1681 molybdopterin oxidoreductase Fe4S4 domain protein K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D CH53_1679 fdxH; formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D CH53_1678 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma D CH53_1371 formate dehydrogenase, alpha subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-] D CH53_3275 formate dehydrogenase, alpha subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-] D CH53_654 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CH53_949 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CH53_1910 phosphoenolpyruvate carboxylase family protein K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D CH53_1302 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CH53_2607 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CH53_1308 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CH53_1894 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D CH53_1887 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CH53_2495 pfkB; phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11] D CH53_236 cytochrome c554 and c-prime family protein K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D CH53_237 molybdopterin guanine dinucleotide-containing S/N-oxide reductases family protein K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D CH53_391 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CH53_392 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D CH53_1439 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CH53_4120 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D CH53_3168 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CH53_1090 putative phosphoglycerate mutase gpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CH53_1872 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CH53_2613 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CH53_157 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D CH53_1112 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:yin00910] D CH53_3683 narK; nitrite transporter family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D CH53_3684 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D CH53_3685 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D CH53_3687 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D CH53_557 napA; periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D CH53_556 nitrate reductase cytochrome c-type subunit family protein K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D CH53_1533 nirB; nitrite reductase [NAD(P)H], large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D CH53_1534 nirD; nitrite reductase [NAD(P)H] small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D CH53_183 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D CH53_1608 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CH53_1809 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CH53_2269 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D CH53_2268 glutamate synthase, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CH53_57 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D CH53_2567 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D CH53_2653 carbonic anhydrase family protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D CH53_982 can; carbonic anhydrase 2 K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D CH53_274 cah; carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:yin00920] D CH53_544 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D CH53_1888 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D CH53_543 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D CH53_542 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D CH53_541 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D CH53_1512 tauA; taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein D CH53_1510 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein D CH53_1511 ABC transporter family protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D CH53_1508 tauD; alpha-ketoglutarate-dependent taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D CH53_937 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D CH53_938 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D CH53_936 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D CH53_1317 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D CH53_943 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D CH53_945 sulfite reductase [NADPH] flavoprotein, alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D CH53_944 cysI; sulfite reductase (NADPH) hemoprotein, beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D CH53_25 molybdopterin oxidoreductase family protein K08357 ttrA; tetrathionate reductase subunit A D CH53_27 4Fe-4S dicluster domain protein K08358 ttrB; tetrathionate reductase subunit B D CH53_26 polysulfide reductase, NrfD family protein K08359 ttrC; tetrathionate reductase subunit C D CH53_3223 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CH53_1571 glpE; thiosulfate sulfurtransferase glpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D CH53_1877 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CH53_524 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CH53_2871 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D CH53_2120 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D CH53_1907 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D CH53_839 dmsA; anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D CH53_491 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D CH53_838 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D CH53_492 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D CH53_837 DMSO reductase anchor subunit family protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D CH53_493 DMSO reductase anchor subunit family protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:yin00061] D CH53_2736 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CH53_2194 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CH53_2193 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CH53_410 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CH53_783 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein D CH53_784 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein D CH53_5 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D CH53_885 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein D CH53_7 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CH53_8 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CH53_774 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CH53_428 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CH53_771 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_4 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_887 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_120 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_772 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_6 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_884 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_4017 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_118 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D CH53_2731 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CH53_1737 NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D CH53_1032 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_3819 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_2480 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:yin00071] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CH53_2070 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CH53_439 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CH53_2783 hypothetical protein K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D CH53_1032 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_3819 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_2480 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_2678 acyltransferase family protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D CH53_3264 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CH53_3871 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:yin00561] D CH53_64 glxK; glycerate kinase 1 K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CH53_1377 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CH53_2284 zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2] D CH53_1150 dhaK; dihydroxyacetone kinase, DhaK subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D CH53_1149 dhaL; dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D CH53_1148 dhaM; PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D CH53_1151 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D CH53_1895 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CH53_828 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30] D CH53_2149 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D CH53_9 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CH53_2329 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D CH53_2362 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CH53_2150 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D CH53_3640 lipase family protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D CH53_2990 melA; alpha-galactosidase K07406 melA; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:yin00564] D CH53_1876 ketopantoate reductase PanE/ApbA family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D CH53_1575 FAD dependent oxidoreductase family protein K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D CH53_2016 glpA; glycerol-3-phosphate dehydrogenase, anaerobic, A subunit K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D CH53_2017 glpB; glycerol-3-phosphate dehydrogenase, anaerobic, B subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3] D CH53_2018 glpC; glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C D CH53_2149 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D CH53_2329 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D CH53_2362 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CH53_2150 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D CH53_2008 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D CH53_2012 prolyl oligopeptidase family protein K01048 pldB; lysophospholipase [EC:3.1.1.5] D CH53_2014 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CH53_2048 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CH53_2678 acyltransferase family protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D CH53_2517 ethanolamine utilization EutA family protein K04019 eutA; ethanolamine utilization protein EutA D CH53_2420 ethanolamine ammonia lyase large subunit family protein K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D CH53_2518 eutB; ethanolamine ammonia-lyase heavy chain K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D CH53_2421 ethanolamine ammonia-lyase light chain family protein K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D CH53_2519 eutC; ethanolamine ammonia-lyase light chain K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D CH53_1617 CDP-diacylglycerol pyrophosphatase family protein K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26] D CH53_2726 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D CH53_2759 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CH53_1350 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D CH53_3622 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D CH53_2842 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D CH53_3913 PAP2 superfamily protein K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] D CH53_672 haloacid dehalogenase-like hydrolase family protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27] D CH53_3881 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:yin00565] D CH53_2008 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:yin00600] D CH53_3523 glycosyl hydrolases 2 family protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CH53_2990 melA; alpha-galactosidase K07406 melA; alpha-galactosidase [EC:3.2.1.22] D CH53_3102 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] C 00590 Arachidonic acid metabolism D CH53_2008 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00591 Linoleic acid metabolism D CH53_2008 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:yin00592] D CH53_2008 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D CH53_2070 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CH53_439 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:yin01040] D CH53_2927 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D CH53_2877 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D CH53_3887 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:yin00230] D CH53_2344 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CH53_1550 nudE; ADP compounds hydrolase nudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D CH53_1116 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D CH53_3119 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CH53_3760 prs; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CH53_406 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CH53_2110 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D CH53_586 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CH53_4347 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D CH53_668 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D CH53_585 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D CH53_2930 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D CH53_2931 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit PurE K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D CH53_574 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D CH53_4404 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CH53_2111 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CH53_2897 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CH53_2918 ushA; protein UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D CH53_927 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D CH53_3094 HAD hydrolase, IIA family protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D CH53_1552 HAD hydrolase, IA, variant 3 family protein K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D CH53_2915 gsk; inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73] D CH53_3395 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CH53_1115 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D CH53_2816 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D CH53_795 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CH53_983 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D CH53_621 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CH53_633 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CH53_1092 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D CH53_2583 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D CH53_2800 gpt; xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D CH53_620 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CH53_1004 guaC; guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7] D CH53_1828 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D CH53_753 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CH53_341 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CH53_754 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CH53_342 nrdB; ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CH53_1251 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CH53_956 dgt; deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D CH53_386 HD domain protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D CH53_3631 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D CH53_1826 spoT; bifunctional (p)ppGpp synthase/hydrolase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CH53_593 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D CH53_1968 ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D CH53_952 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D CH53_1993 adenylate cyclase, class-I family protein K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D CH53_3209 cyaB; adenylate cyclase 2 K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D CH53_3129 cAMP phosphodiesterases class-II family protein K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] D CH53_1333 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CH53_3951 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D CH53_4001 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D CH53_2710 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D CH53_3146 hypothetical protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D CH53_1318 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D CH53_2904 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CH53_951 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CH53_2346 calcineurin-like phosphoesterase family protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D CH53_1060 apaH; bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D CH53_936 cysC; adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D CH53_937 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D CH53_938 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D CH53_66 allB; allantoinase K01466 allB; allantoinase [EC:3.5.2.5] D CH53_62 allC; allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D CH53_2772 amidase, hydantoinase/carbamoylase family protein K02083 allC; allantoate deiminase [EC:3.5.3.9] D CH53_2771 putative ureidoglycine-glyoxylate aminotransferase K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112] D CH53_63 hypothetical protein K14977 ylbA; (S)-ureidoglycine aminohydrolase [EC:3.5.3.26] D CH53_72 allA; ureidoglycolate hydrolase K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D CH53_729 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D CH53_730 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D CH53_731 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D CH53_61 allD; ureidoglycolate dehydrogenase K00073 allD; ureidoglycolate dehydrogenase (NAD+) [EC:1.1.1.350] D CH53_57 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:yin00240] D CH53_1065 carB; carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CH53_1066 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CH53_2237 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CH53_2236 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D CH53_2224 amidohydrolase family protein K01465 URA4; dihydroorotase [EC:3.5.2.3] D CH53_16 pyrC; dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3] D CH53_128 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D CH53_1853 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D CH53_3918 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D CH53_2722 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D CH53_633 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CH53_951 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CH53_2203 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D CH53_2306 hypothetical protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D CH53_950 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D CH53_155 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D CH53_3857 nudG; CTP pyrophosphohydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65] D CH53_3302 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D CH53_2918 ushA; protein UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D CH53_927 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D CH53_3094 HAD hydrolase, IIA family protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D CH53_4009 noncanonical pyrimidine nucleotidase, YjjG family K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D CH53_2054 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D CH53_2816 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D CH53_584 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D CH53_3146 hypothetical protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D CH53_1318 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D CH53_2805 psuK; pseudouridine kinase K16328 psuK; pseudouridine kinase [EC:2.7.1.83] D CH53_2806 psuG; pseudouridine-5'-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D CH53_3072 rihA; pyrimidine-specific ribonucleoside hydrolase rihA K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-] D CH53_2710 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D CH53_3293 cytidine and deoxycytidylate deaminase zinc-binding region family protein K01489 cdd; cytidine deaminase [EC:3.5.4.5] D CH53_1532 amidohydrolase family protein K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D CH53_1251 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CH53_3303 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D CH53_753 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CH53_341 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CH53_754 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CH53_342 nrdB; ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CH53_386 HD domain protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D CH53_3631 hypothetical protein K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D CH53_1 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D CH53_1855 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CH53_1117 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D CH53_3870 thymidine kinase family protein K00857 tdk; thymidine kinase [EC:2.7.1.21] D CH53_2687 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D CH53_3974 ydfG; NADP-dependent 3-hydroxy acid dehydrogenase YdfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:yin00250] D CH53_133 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CH53_688 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CH53_158 ansB; L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D CH53_3851 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D CH53_1781 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D CH53_3092 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D CH53_2773 carbon-nitrogen hydrolase family protein K13566 NIT2; omega-amidase [EC:3.5.1.3] D CH53_384 hypothetical protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D CH53_1367 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D CH53_3397 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CH53_1915 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CH53_1333 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CH53_4404 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CH53_2237 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CH53_2236 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D CH53_48 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CH53_2212 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CH53_196 gabD; aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CH53_2269 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D CH53_2268 glutamate synthase, small subunit domain protein K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CH53_1608 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CH53_3598 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D CH53_1809 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CH53_1065 carB; carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CH53_1066 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CH53_46 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D CH53_2580 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D CH53_1766 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CH53_406 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:yin00260] D CH53_2138 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D CH53_1086 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D CH53_1908 homoserine dehydrogenase, NAD binding domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D CH53_1585 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CH53_1085 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D CH53_1084 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D CH53_187 ltaE; low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D CH53_654 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CH53_3774 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D CH53_1704 ghrB; glyoxylate/hydroxypyruvate reductase B K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D CH53_64 glxK; glycerate kinase 1 K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CH53_1377 glycerate kinase family protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CH53_3168 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CH53_1090 putative phosphoglycerate mutase gpmB K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CH53_1872 gpmI; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CH53_2613 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CH53_157 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D CH53_1112 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D CH53_3974 ydfG; NADP-dependent 3-hydroxy acid dehydrogenase YdfG K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D CH53_1868 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D CH53_1869 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D CH53_2622 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D CH53_2620 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_2621 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D CH53_2759 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CH53_217 CBS domain protein K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D CH53_218 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CH53_471 metB; O-succinylhomoserine (thiol)-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CH53_215 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CH53_4351 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CH53_1393 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CH53_1718 pyridoxal-phosphate dependent enzyme family protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CH53_1954 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CH53_875 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D CH53_426 aspartate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D CH53_3894 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D CH53_3895 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:yin00270] D CH53_1877 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CH53_524 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CH53_2871 pyridoxal-phosphate dependent enzyme family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D CH53_218 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CH53_471 metB; O-succinylhomoserine (thiol)-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CH53_2371 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CH53_3955 C-S lyase family protein K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CH53_217 CBS domain protein K01697 CBS; cystathionine beta-synthase [EC:4.2.1.22] D CH53_2476 mmuM; homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10] D CH53_2131 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CH53_2052 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D CH53_2600 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D CH53_987 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D CH53_986 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D CH53_2504 esaI; acyl-homoserine-lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D CH53_45 esaI; acyl-homoserine-lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D CH53_957 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D CH53_2779 mtnK; S-methyl-5-thioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100] D CH53_795 multi-copper polyphenol oxidoreductase laccase family protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CH53_2948 amidohydrolase family protein K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D CH53_2778 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D CH53_2775 mtnB; methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] D CH53_2776 mtnC; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77] D CH53_2777 mtnD; acireductone dioxygenase K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] D CH53_2159 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D CH53_4277 GAF domain protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D CH53_812 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D CH53_2138 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D CH53_1086 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D CH53_1908 homoserine dehydrogenase, NAD binding domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D CH53_1585 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CH53_2120 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D CH53_1907 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D CH53_4389 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D CH53_1952 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CH53_813 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D CH53_2593 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D CH53_133 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CH53_3223 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CH53_426 aspartate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D CH53_3593 dcyD; D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D CH53_1302 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D CH53_215 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CH53_4351 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CH53_540 cysM; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D CH53_2613 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CH53_157 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:yin00280] D CH53_1952 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CH53_2070 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CH53_439 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CH53_4252 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D CH53_1598 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:yin00290] D CH53_1393 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CH53_1718 pyridoxal-phosphate dependent enzyme family protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CH53_1954 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CH53_1037 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D CH53_1038 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D CH53_1036 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D CH53_4006 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1031 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1584 alsS; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1950 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_4007 ilvN; acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CH53_1030 ilvN; acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CH53_1951 ilvM; acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D CH53_1957 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D CH53_1953 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D CH53_1952 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CH53_1706 aminotransferase class I and II family protein K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D CH53_384 hypothetical protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D CH53_1035 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:yin00300] D CH53_2138 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D CH53_1086 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D CH53_1908 homoserine dehydrogenase, NAD binding domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D CH53_1585 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CH53_576 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CH53_1067 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D CH53_2717 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D CH53_1521 astC; succinylornithine transaminase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D CH53_565 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D CH53_1996 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CH53_2674 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D CH53_3677 aminotransferase class I and II family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D CH53_1023 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CH53_1022 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:yin00310] D CH53_3143 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CH53_426 aspartate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D CH53_2737 hypothetical protein K01582 E4.1.1.18; lysine decarboxylase [EC:4.1.1.18] D CH53_2212 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CH53_196 gabD; aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CH53_149 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93] D CH53_4118 hypothetical protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-] D CH53_2127 atoD; acetate CoA-transferase subunit alpha K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D CH53_2126 atoA; acetate CoA-transferase subunit beta K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] C 00220 Arginine biosynthesis [PATH:yin00220] D CH53_1242 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D CH53_3397 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CH53_1915 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CH53_729 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D CH53_730 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D CH53_731 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] D CH53_1154 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D CH53_46 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D CH53_2580 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D CH53_1809 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CH53_1608 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D CH53_57 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D CH53_133 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CH53_384 hypothetical protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D CH53_2696 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D CH53_1914 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D CH53_1913 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D CH53_1521 astC; succinylornithine transaminase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D CH53_1912 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:yin00330] D CH53_1532 amidohydrolase family protein K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D CH53_2601 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D CH53_2589 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12] D CH53_2590 aguB; N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D CH53_1265 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D CH53_2573 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D CH53_986 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D CH53_987 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D CH53_587 speG; spermidine N(1)-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D CH53_862 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D CH53_3734 astA; arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D CH53_3736 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D CH53_3733 astC; succinylornithine transaminase family protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D CH53_3735 astD; succinylglutamate-semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D CH53_3737 astE; succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D CH53_2586 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D CH53_3598 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D CH53_2803 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D CH53_2804 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D CH53_4339 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D CH53_133 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:yin00340] D CH53_3333 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D CH53_3326 hisE; phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D CH53_3328 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D CH53_3329 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D CH53_3327 hisF; imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D CH53_3330 hisB; histidinol-phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D CH53_3331 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CH53_3332 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D CH53_1656 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D CH53_1657 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D CH53_3740 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D CH53_3742 hutF; formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D CH53_3739 hutG; N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00350 Tyrosine metabolism [PATH:yin00350] D CH53_133 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CH53_3331 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CH53_2159 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D CH53_3264 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CH53_3871 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CH53_2212 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CH53_196 gabD; aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:yin00360] D CH53_133 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CH53_3331 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CH53_2159 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D CH53_1591 acetyltransferase domain protein K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D CH53_3838 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D CH53_862 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:yin00380] D CH53_3143 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CH53_1040 tnaA; tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1] D CH53_862 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D CH53_352 katA; catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:yin00400] D CH53_801 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CH53_4122 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CH53_3167 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CH53_1542 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D CH53_2195 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D CH53_1449 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D CH53_1543 aroK; shikimate kinase 1 K00891 aroK; shikimate kinase [EC:2.7.1.71] D CH53_2815 aroL; shikimate kinase 2 K00891 aroK; shikimate kinase [EC:2.7.1.71] D CH53_156 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D CH53_434 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D CH53_3899 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D CH53_3898 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D CH53_3897 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D CH53_3896 indole-3-glycerol phosphate synthase family protein K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D CH53_3894 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D CH53_3895 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D CH53_800 tyrA; T-protein K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D CH53_799 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D CH53_133 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CH53_3331 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CH53_2159 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:yin00410] D CH53_978 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D CH53_48 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CH53_976 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CH53_1598 mmsA; methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:yin00430] D CH53_48 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CH53_2828 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D CH53_1508 tauD; alpha-ketoglutarate-dependent taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D CH53_392 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D CH53_391 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:yin00440] D CH53_1256 bacterial phosphonate metabolism family protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D CH53_1254 phnG; phosphonate C-P lyase system protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D CH53_1255 phnH; phosphonate C-P lyase system protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D CH53_1259 phnL; phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D CH53_1260 phnM; phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D CH53_1257 phnJ; protein phnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D CH53_1263 phnP; phosphonate metabolism protein PhnP K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:yin00450] D CH53_1907 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D CH53_2371 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CH53_3955 C-S lyase family protein K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CH53_2131 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CH53_2052 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D CH53_218 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CH53_471 metB; O-succinylhomoserine (thiol)-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CH53_4112 sufS; cysteine desulfurase, SufS family protein K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D CH53_170 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CH53_937 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D CH53_938 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D CH53_3854 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D CH53_2225 beta-eliminating lyase family protein K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D CH53_1676 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D CH53_3300 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:yin00460] D CH53_2828 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D CH53_158 ansB; L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D CH53_3851 ansA; cytoplasmic L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D CH53_1781 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D CH53_654 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:yin00470] D CH53_3839 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CH53_2158 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CH53_1016 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CH53_2797 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CH53_426 aspartate racemase family protein K25316 racX; amino-acid racemase [EC:5.1.1.10] D CH53_46 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D CH53_2580 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D CH53_1934 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CH53_1020 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CH53_4050 hypothetical protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D CH53_875 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18] D CH53_3593 dcyD; D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D CH53_1996 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CH53_2674 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D CH53_3838 ketopantoate reductase PanE/ApbA family protein K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:yin00480] D CH53_2828 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D CH53_3133 lamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D CH53_3131 allophanate hydrolase subunit 1 family protein K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9] D CH53_3132 hypothetical protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D CH53_813 gshA; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D CH53_2593 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D CH53_1237 pepA; cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CH53_639 peptidase family protein K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D CH53_129 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D CH53_2799 pepD; Xaa-His dipeptidase family protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D CH53_4077 gstB; glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CH53_2165 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CH53_4290 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CH53_225 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CH53_1613 gor; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D CH53_4399 icd; isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D CH53_3325 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D CH53_3811 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D CH53_4137 glutathione peroxidase family protein K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D CH53_1927 hybrid peroxiredoxin hyPrx5 K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27] D CH53_1265 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D CH53_2573 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D CH53_986 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:yin00511] D CH53_3523 glycosyl hydrolases 2 family protein K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D CH53_3102 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CH53_76 glycosyl hydrolases 2 family protein K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25] C 00540 Lipopolysaccharide biosynthesis [PATH:yin00540] D CH53_2732 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D CH53_3830 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D CH53_1012 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D CH53_2730 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D CH53_2932 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D CH53_2733 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D CH53_150 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D CH53_2250 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D CH53_3768 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D CH53_2249 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D CH53_144 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D CH53_1863 glycosyl transferases group 1 family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D CH53_30 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CH53_3808 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D CH53_256 yeiU; inner membrane protein yeiU K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D CH53_4090 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D CH53_1651 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D CH53_4365 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D CH53_4131 dolichyl-phosphate-mannose-mannosyltransferase family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D CH53_2176 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D CH53_2784 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D CH53_2336 rfaE1; bifunctional protein RfaE, domain I K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D CH53_2752 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D CH53_1867 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D CH53_1865 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D CH53_1866 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D CH53_1157 rfaQ; putative lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] C 00542 O-Antigen repeat unit biosynthesis [PATH:yin00542] D CH53_1972 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:yin00541] D CH53_3323 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_3324 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CH53_2914 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CH53_3173 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CH53_3868 nucleotide sugar dehydrogenase family protein K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D CH53_1977 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CH53_1976 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CH53_1979 wecE; TDP-4-keto-6-deoxy-D-glucose transaminase family protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D CH53_1978 wecD; TDP-D-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210] D CH53_3960 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D CH53_3308 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein K01840 manB; phosphomannomutase [EC:5.4.2.8] D CH53_3307 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CH53_3319 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D CH53_3320 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22252 tld; GDP-6-deoxy-D-talose 4-dehydrogenase [EC:1.1.1.135] D CH53_1767 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CH53_1974 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CH53_1975 nucleotide sugar dehydrogenase family protein K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D CH53_2912 3-beta hydroxysteroid dehydrogenase/isomerase family protein K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] C 00550 Peptidoglycan biosynthesis [PATH:yin00550] D CH53_2258 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CH53_2080 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CH53_1017 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CH53_1020 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CH53_1023 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CH53_1016 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CH53_2797 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CH53_1022 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CH53_2725 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CH53_2331 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CH53_211 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CH53_1021 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CH53_1018 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CH53_2273 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CH53_1549 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CH53_967 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D CH53_635 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D CH53_3064 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CH53_1024 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CH53_4362 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CH53_216 dacC; D-alanyl-D-alanine carboxypeptidase dacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CH53_3061 dacA; D-alanyl-D-alanine carboxypeptidase dacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CH53_1291 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:yin00552] D CH53_2331 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CH53_211 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CH53_1972 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D CH53_2912 3-beta hydroxysteroid dehydrogenase/isomerase family protein K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:yin00543] D CH53_1972 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D CH53_1983 glycosyltransferase, WecB/TagA/CpsF family protein K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D CH53_1981 4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D CH53_3718 pgaC; poly-beta-1,6 N-acetyl-D-glucosamine synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D CH53_3719 pgaD; poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD K11937 pgaD; biofilm PGA synthesis protein PgaD D CH53_1877 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:yin00730] D CH53_2102 thiC; phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D CH53_616 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D CH53_2100 thiF family protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D CH53_646 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CH53_2846 thiI; tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CH53_2097 thiH; thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D CH53_2843 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CH53_2098 thiazole biosynthesis ThiG family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D CH53_2417 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D CH53_2101 thiE; thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D CH53_2841 thiL; thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D CH53_1349 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CH53_4016 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D CH53_4420 thiK; thiamine kinase K07251 thiK; thiamine kinase [EC:2.7.1.89] D CH53_2904 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:yin00740] D CH53_3912 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D CH53_2838 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CH53_3678 ybjI; phosphatase YbjI K20861 ybjI; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D CH53_1999 HAD hydrolase, IA, variant 1 family protein K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D CH53_2339 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D CH53_2839 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D CH53_4103 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D CH53_1072 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D CH53_3517 appA; periplasmic AppA protein K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] D CH53_2069 fre; NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41] D CH53_2417 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D CH53_2344 nudF; ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CH53_4401 nudJ; phosphatase nudJ K12152 nudJ; phosphatase NudJ [EC:3.6.1.-] D CH53_405 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:yin00750] D CH53_4080 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D CH53_4078 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D CH53_2355 aldo/keto reductase family protein K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] D CH53_2605 epd; erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D CH53_414 pdxB; erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D CH53_157 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D CH53_1057 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D CH53_677 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D CH53_1084 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:yin00760] D CH53_688 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CH53_3162 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D CH53_1000 nadC; nicotinate-nucleotide diphosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D CH53_130 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D CH53_3395 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CH53_1115 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D CH53_1110 nadR; trifunctional NAD biosynthesis/regulator protein NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D CH53_2918 ushA; protein UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D CH53_927 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D CH53_3094 HAD hydrolase, IIA family protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5] D CH53_3067 nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D CH53_951 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CH53_2104 NADH pyrophosphatase-like rudimentary NUDIX domain protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D CH53_663 nadE; NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D CH53_824 ygaD; protein YgaD K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D CH53_3850 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D CH53_4410 sir2 family protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D CH53_696 ATP-NAD kinase family protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D CH53_1928 pyridine nucleotide-disulfide oxidoreductase family protein K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] D CH53_4026 pntA; NAD(P)(+) transhydrogenase (AB-specific), alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D CH53_4025 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D CH53_2212 succinate-semialdehyde dehydrogenase family protein K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D CH53_196 gabD; aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:yin00770] D CH53_4006 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1031 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1584 alsS; acetolactate synthase, catabolic K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_1950 ilvB; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D CH53_4007 ilvN; acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CH53_1030 ilvN; acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D CH53_1951 ilvM; acetolactate synthase isozyme 2 small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D CH53_1957 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D CH53_1953 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D CH53_975 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D CH53_2848 2-dehydropantoate 2-reductase family protein K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D CH53_976 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D CH53_2082 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D CH53_1856 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D CH53_951 mazG; nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D CH53_1861 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D CH53_1005 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D CH53_676 acpS; holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D CH53_2830 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D CH53_1952 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CH53_978 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:yin00780] D CH53_3186 bioC; malonyl-acyl carrier protein O-methyltransferase BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D CH53_774 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CH53_428 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CH53_771 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_4 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_887 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_120 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_772 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_6 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_884 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_4017 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_2731 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CH53_1565 bioH; pimelyl-[acyl-carrier protein] methyl ester esterase K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D CH53_3185 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D CH53_3183 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D CH53_3187 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D CH53_3968 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D CH53_3184 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D CH53_2081 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CH53_2677 molybdopterin oxidoreductase family protein K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] C 00785 Lipoic acid metabolism [PATH:yin00785] D CH53_3059 lipB; lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D CH53_3058 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D CH53_4127 lplA; lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_995 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D CH53_994 aceF; dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CH53_3142 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D CH53_3143 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D CH53_2622 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D CH53_2620 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CH53_2621 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:yin00790] D CH53_3267 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D CH53_4016 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D CH53_3798 nudB; dihydroneopterin triphosphate pyrophosphatase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D CH53_2330 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D CH53_974 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D CH53_1286 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D CH53_1061 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D CH53_409 folC; bifunctional FolC family protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D CH53_3912 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D CH53_1522 glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D CH53_4349 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D CH53_3 pabC; aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D CH53_946 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CH53_947 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CH53_2868 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CH53_2711 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D CH53_1837 metallo-beta-lactamase superfamily protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D CH53_3193 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D CH53_3194 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D CH53_3196 moaE; molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D CH53_1081 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D CH53_3254 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D CH53_1799 mobA; molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:yin00670] D CH53_1061 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D CH53_3938 formate--tetrahydrofolate ligase family protein K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D CH53_2936 folD; bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D CH53_654 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CH53_586 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CH53_2111 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CH53_1455 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CH53_2620 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CH53_2131 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CH53_2687 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D CH53_3864 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D CH53_1909 metF; methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D CH53_2614 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:yin00860] D CH53_515 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CH53_3763 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D CH53_962 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D CH53_2066 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CH53_1992 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D CH53_1991 uroporphyrinogen-III synthase HemD family protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D CH53_2105 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D CH53_549 coproporphyrinogen III oxidase family protein K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D CH53_1806 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D CH53_2075 flavodoxin domain protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D CH53_2905 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D CH53_1990 hemX family protein K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D CH53_1536 cysG; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D CH53_939 cobA; uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D CH53_3349 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D CH53_308 cobA; uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D CH53_2851 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D CH53_3382 cbiK; sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D CH53_3383 cobI; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D CH53_3380 cbiH; cobalt-precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D CH53_3378 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D CH53_3379 cobalamin synthesis G family protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D CH53_3381 cobK; precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D CH53_3375 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D CH53_3377 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196] D CH53_3376 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289] D CH53_3374 cbiC; cobalt-precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D CH53_3372 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D CH53_305 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D CH53_3904 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D CH53_3388 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D CH53_3373 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D CH53_3389 cobU; bifunctional adenosylcobalamin biosynthesis protein CobU K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D CH53_3390 cobS; cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D CH53_3392 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D CH53_3391 cobC; alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D CH53_3347 hypothetical protein K16651 pduX; L-threonine kinase [EC:2.7.1.177] D CH53_309 hypothetical protein K16651 pduX; L-threonine kinase [EC:2.7.1.177] D CH53_3348 threonine-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D CH53_2509 cobalamin adenosyltransferase family protein K04032 eutT; ethanolamine utilization cobalamin adenosyltransferase [EC:2.5.1.154] D CH53_1490 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:yin00130] D CH53_2147 chorismate lyase family protein K03181 ubiC; chorismate lyase [EC:4.1.3.40] D CH53_2148 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D CH53_2068 decarboxylase, UbiD family protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D CH53_405 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D CH53_2619 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D CH53_340 ubiG; 3-demethylubiquinone-9 3-O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D CH53_2618 ubiH; 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D CH53_2059 ubiE; ubiquinone/menaquinone biosynthesis methyltransferase ubiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D CH53_3083 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D CH53_358 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D CH53_357 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D CH53_356 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D CH53_354 menC; o-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D CH53_353 menE; O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D CH53_355 menB; naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D CH53_4117 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D CH53_1899 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D CH53_1177 NADPH-dependent FMN reductase family protein K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D CH53_3603 wrbA; quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D CH53_2952 NADPH-dependent FMN reductase family protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D CH53_4388 3-beta hydroxysteroid dehydrogenase/isomerase family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:yin00900] D CH53_2843 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CH53_2724 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D CH53_930 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D CH53_3761 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D CH53_929 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D CH53_629 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D CH53_1068 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CH53_405 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D CH53_2844 ispA; farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D CH53_1298 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D CH53_2725 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:yin00907] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CH53_2070 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CH53_439 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D CH53_2604 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CH53_829 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CH53_830 hypothetical protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:yin00523] D CH53_1977 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CH53_1976 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:yin01053] D CH53_358 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D CH53_3456 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D CH53_452 chorismate mutase type II family protein K04782 pchB; isochorismate pyruvate lyase [EC:4.2.99.21] C 01055 Biosynthesis of vancomycin group antibiotics D CH53_1976 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis D CH53_3963 bla; beta-lactamase Toho-1 K17836 penP; beta-lactamase class A [EC:3.5.2.6] C 00332 Carbapenem biosynthesis [PATH:yin00332] D CH53_2803 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D CH53_2804 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:yin00261] D CH53_937 cysN; sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D CH53_938 cysD; sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D CH53_2138 aspartate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4] D CH53_1086 aspartate kinase domain protein K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D CH53_1908 homoserine dehydrogenase, NAD binding domain protein K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D CH53_1585 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CH53_576 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CH53_1067 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D CH53_2083 acetyltransferase domain protein K19113 ttr; acetyltransferase [EC:2.3.1.-] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:yin00521] D CH53_504 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D CH53_3119 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CH53_649 suhB; inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D CH53_1593 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D CH53_1977 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CH53_1976 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D CH53_504 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:yin00525] D CH53_1977 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CH53_1976 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:yin00401] D CH53_800 tyrA; T-protein K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D CH53_133 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CH53_3331 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CH53_2159 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D CH53_3899 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D CH53_3898 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D CH53_7 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CH53_772 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_6 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_884 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_4017 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D CH53_783 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein D CH53_784 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein D CH53_5 acpP; acyl carrier protein K02078 acpP; acyl carrier protein D CH53_885 phosphopantetheine attachment site family protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:yin00999] D CH53_2600 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D CH53_1449 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites [PATH:yin00997] D CH53_2434 iucD; L-lysine 6-monooxygenase K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59] D CH53_2436 acetyltransferase domain protein K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] D CH53_2437 iucA / IucC family protein K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38] D CH53_2435 iucA / IucC family protein K03895 iucC; aerobactin synthase [EC:6.3.2.39] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:yin00362] D CH53_2971 alpha/beta hydrolase family protein K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D CH53_2070 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CH53_439 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CH53_1620 dmpI; 4-oxalocrotonate tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:yin00627] D CH53_862 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D CH53_104 acylphosphatase family protein K01512 acyP; acylphosphatase [EC:3.6.1.7] D CH53_405 polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D CH53_2127 atoD; acetate CoA-transferase subunit alpha K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D CH53_2126 atoA; acetate CoA-transferase subunit beta K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] C 00364 Fluorobenzoate degradation [PATH:yin00364] D CH53_2053 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:yin00625] D CH53_3264 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CH53_3871 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:yin00361] D CH53_2053 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:yin00623] D CH53_2053 chlorophyllase family protein K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation D CH53_1620 dmpI; 4-oxalocrotonate tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation [PATH:yin00633] D CH53_4092 flavin oxidoreductase / NADH oxidase family protein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D CH53_3029 flavin oxidoreductase / NADH oxidase family protein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D CH53_2408 hybC; hydrogenase-2 large chain K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D CH53_2405 hybO; hydrogenase-2 small chain K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] C 00642 Ethylbenzene degradation D CH53_2070 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D CH53_439 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation [PATH:yin00643] D CH53_862 acetamidase/Formamidase family protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation D CH53_729 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D CH53_730 ureB; urease subunit beta K01429 ureB; urease subunit beta [EC:3.5.1.5] D CH53_731 ureA; urease subunit gamma K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:yin00930] D CH53_4237 SMP-30/Gluconolaconase/LRE-like region family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D CH53_2071 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D CH53_438 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation D CH53_1620 dmpI; 4-oxalocrotonate tautomerase enzyme family protein K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation [PATH:yin00626] D CH53_3264 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D CH53_3871 aldehyde dehydrogenase family protein K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:yin03020] D CH53_2095 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CH53_2096 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CH53_1463 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CH53_1827 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:yin03010] D CH53_154 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CH53_2720 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CH53_1482 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CH53_1464 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CH53_1471 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CH53_1325 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CH53_1494 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CH53_1474 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CH53_2264 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CH53_1489 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CH53_1465 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CH53_1495 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CH53_1466 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CH53_1475 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D CH53_1276 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CH53_808 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CH53_1479 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CH53_1324 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CH53_1484 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CH53_1073 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CH53_2326 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CH53_2092 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CH53_1485 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CH53_1488 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CH53_1487 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CH53_1476 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CH53_1473 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CH53_2094 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CH53_1323 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CH53_2093 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CH53_2091 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CH53_2263 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CH53_1478 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CH53_1469 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CH53_1481 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CH53_1462 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CH53_1472 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CH53_805 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CH53_4144 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CH53_1297 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CH53_1483 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CH53_1486 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CH53_1477 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CH53_268 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D CH53_1296 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CH53_1858 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CH53_1480 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CH53_1470 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CH53_1905 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CH53_2888 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CH53_10 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CH53_1859 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CH53_1732 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CH53_4145 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CH53_1467 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CH53_2887 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CH53_1794 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_2753 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_2113 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_2076 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_793 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_1446 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_1935 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_1796 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_2116 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_2078 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_1938 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_791 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_1444 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_2756 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_1797 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2117 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2079 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2757 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_1939 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_790 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_1443 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2119 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:yin00970] D CH53_516 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_517 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_1937 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_2755 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_2115 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_1985 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_2937 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_816 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_818 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_817 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_454 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_3429 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CH53_3505 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CH53_3437 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CH53_762 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CH53_1940 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CH53_789 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CH53_3624 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CH53_3089 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CH53_3086 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CH53_3088 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CH53_1445 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CH53_1795 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CH53_2077 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CH53_792 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CH53_2640 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_2086 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_1345 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_1346 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_1347 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_3623 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_1986 tRNA-His K14226 tRNA-His; tRNA His D CH53_1936 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CH53_2754 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CH53_2114 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CH53_1987 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1131 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1130 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1132 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1283 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_3090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_3625 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1234 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_3158 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_511 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3161 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3160 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3159 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3608 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3087 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_3091 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_2323 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_1282 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_2700 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_2699 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_2698 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_1381 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CH53_2572 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CH53_272 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CH53_1647 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CH53_1988 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CH53_819 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_3771 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_3773 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_102 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_333 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_2087 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CH53_2118 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CH53_2084 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CH53_304 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CH53_1941 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CH53_2085 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CH53_3862 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CH53_3860 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CH53_512 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_514 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_513 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_4105 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_4106 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_4107 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_1660 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D CH53_515 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CH53_3099 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CH53_821 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CH53_3796 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CH53_131 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CH53_1696 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D CH53_1695 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D CH53_4147 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CH53_164 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CH53_2225 beta-eliminating lyase family protein K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D CH53_1676 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D CH53_2934 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CH53_3300 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CH53_1455 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CH53_1239 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CH53_3070 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CH53_1071 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CH53_2639 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CH53_3788 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CH53_2746 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CH53_628 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CH53_4143 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CH53_4142 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CH53_4079 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CH53_1537 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:yin03060] D CH53_1468 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CH53_2089 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CH53_1284 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CH53_2834 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CH53_2835 secF; export membrane protein secF K03074 secF; preprotein translocase subunit SecF D CH53_2833 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CH53_1735 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CH53_1009 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CH53_1875 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D CH53_1010 secretion monitor family protein K13301 secM; secretion monitor D CH53_809 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CH53_2028 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CH53_3983 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D CH53_2062 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D CH53_2063 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D CH53_2064 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D CH53_3057 tatA; twin arginine-targeting translocase, TatA/E family protein K03425 tatE; sec-independent protein translocase protein TatE D CH53_681 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CH53_1070 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:yin04122] D CH53_646 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CH53_3223 rhodanese-like domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CH53_2021 tusA; sulfurtransferase tusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D CH53_1496 dsrH; sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B D CH53_1497 tusC; sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C D CH53_1498 tusD; sulfurtransferase tusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D CH53_103 tusE; sulfur relay, TusE/DsrC/DsvC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D CH53_4402 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CH53_3196 moaE; molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D CH53_3193 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D CH53_3195 moaD; molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein D CH53_3253 moeB; molybdopterin synthase sulfurylase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D CH53_3194 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D CH53_1081 mog; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D CH53_2846 thiI; tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CH53_2099 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D CH53_2100 thiF family protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:yin03018] D CH53_2684 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D CH53_14 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D CH53_1969 DEAD/DEAH box helicase family protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D CH53_949 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CH53_1275 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CH53_3203 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CH53_1331 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CH53_1273 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CH53_2009 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CH53_1971 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CH53_1887 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CH53_1077 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CH53_1364 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CH53_1338 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D CH53_592 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D CH53_973 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:yin03030] D CH53_4338 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_3642 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_763 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CH53_2735 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CH53_2900 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CH53_4426 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CH53_3068 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CH53_1126 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D CH53_1238 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CH53_1730 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CH53_4196 hypothetical protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CH53_2157 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CH53_2325 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CH53_2162 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CH53_4213 putative single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D CH53_764 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CH53_2734 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CH53_1803 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CH53_521 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CH53_1829 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:yin03410] D CH53_3929 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CH53_694 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D CH53_2577 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D CH53_1860 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D CH53_3584 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D CH53_1697 tag; DNA-3-methyladenine glycosylase I family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D CH53_3858 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CH53_231 apurinic endonuclease family protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D CH53_1803 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CH53_2637 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CH53_521 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CH53_1829 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:yin03420] D CH53_4415 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CH53_2161 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D CH53_3190 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D CH53_3621 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D CH53_2000 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CH53_1803 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CH53_521 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CH53_1829 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:yin03430] D CH53_923 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CH53_1340 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D CH53_2683 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D CH53_2000 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CH53_3340 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D CH53_622 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CH53_2845 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CH53_4341 exoX; exodeoxyribonuclease 10 K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D CH53_2637 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CH53_2162 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CH53_4213 putative single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D CH53_2735 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CH53_1730 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CH53_2900 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CH53_3068 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CH53_4426 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CH53_763 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CH53_4338 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_3642 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_1238 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CH53_1126 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D CH53_521 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CH53_1829 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CH53_1540 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:yin03440] D CH53_2637 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CH53_2162 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CH53_4213 putative single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D CH53_1729 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF D CH53_678 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D CH53_2902 recR; recombination protein RecR K06187 recR; recombination protein RecR D CH53_823 recA; protein RecA K03553 recA; recombination protein RecA D CH53_1803 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CH53_3801 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CH53_3802 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CH53_3800 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D CH53_1824 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CH53_2694 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D CH53_2692 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D CH53_2695 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D CH53_2735 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CH53_1730 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CH53_2900 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CH53_3068 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CH53_4426 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CH53_763 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CH53_4338 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_3642 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_1238 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CH53_1126 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D CH53_1904 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D CH53_2895 primosomal replication priB and priC family protein K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:yin03250] D CH53_1526 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:yin02010] D CH53_544 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D CH53_1888 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D CH53_543 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D CH53_542 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D CH53_541 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D CH53_1512 tauA; taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein D CH53_1510 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein D CH53_1511 ABC transporter family protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D CH53_3178 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D CH53_3179 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D CH53_3180 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D CH53_3175 ABC transporter family protein K05776 modF; molybdate transport system ATP-binding protein D CH53_483 yfuA; yfuA K02012 afuA; iron(III) transport system substrate-binding protein D CH53_3440 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D CH53_484 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D CH53_3439 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D CH53_485 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CH53_3438 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CH53_1046 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D CH53_1047 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein D CH53_1048 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D CH53_205 potF; putrescine-binding periplasmic protein K11073 potF; putrescine transport system substrate-binding protein D CH53_202 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D CH53_203 potH; putrescine transport system permease protein PotH K11075 potH; putrescine transport system permease protein D CH53_204 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D CH53_757 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D CH53_756 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein D CH53_755 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D CH53_3226 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein D CH53_3227 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D CH53_3229 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D CH53_3228 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D CH53_2143 malE; maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D CH53_2142 binding--dependent transport system inner membrane component family protein K10109 malF; maltose/maltodextrin transport system permease protein D CH53_2141 binding--dependent transport system inner membrane component family protein K10110 malG; maltose/maltodextrin transport system permease protein D CH53_2144 malK; maltose/maltodextrin import ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D CH53_4266 bacterial extracellular solute-binding family protein K10192 togB; oligogalacturonide transport system substrate-binding protein D CH53_4263 binding--dependent transport system inner membrane component family protein K10193 togM; oligogalacturonide transport system permease protein D CH53_4264 binding--dependent transport system inner membrane component family protein K10194 togN; oligogalacturonide transport system permease protein D CH53_4265 ABC transporter family protein K10195 togA; oligogalacturonide transport system ATP-binding protein D CH53_2255 putative phospholipid-binding protein mlaC K07323 mlaC; phospholipid transport system substrate-binding protein D CH53_475 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CH53_2254 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CH53_477 ABC transport permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CH53_2253 putative phospholipid ABC transporter permease protein mlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CH53_2256 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein D CH53_476 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CH53_2252 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CH53_2354 bacterial extracellular solute-binding family protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D CH53_4236 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein D CH53_1789 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein D CH53_4235 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D CH53_1788 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D CH53_4234 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D CH53_1787 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D CH53_1786 rbsD / FucU transport family protein K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D CH53_3945 periplasmic binding domain protein K10537 araF; L-arabinose transport system substrate-binding protein D CH53_3947 branched-chain amino acid transport system / permease component family protein K10538 araH; L-arabinose transport system permease protein D CH53_3946 ABC transporter family protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D CH53_1943 ytfQ; ABC transporter periplasmic-binding protein ytfQ K23508 ytfQ; galactofuranose transport system substrate-binding protein D CH53_1947 branched-chain amino acid transport system / permease component family protein K23509 ytfT; galactofuranose transport system permease protein D CH53_1945 branched-chain amino acid transport system / permease component family protein K23509 ytfT; galactofuranose transport system permease protein D CH53_1944 ccmA; heme ABC exporter, ATP-binding protein CcmA K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D CH53_3270 mglB; D-galactose-binding periplasmic protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D CH53_3272 branched-chain amino acid transport system / permease component family protein K10541 mglC; methyl-galactoside transport system permease protein D CH53_3271 ABC transporter family protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D CH53_1664 xylF; D-xylose ABC transporter, D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein D CH53_1662 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein D CH53_1663 ccmA; heme ABC exporter, ATP-binding protein CcmA K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D CH53_3040 alsB; D-allose-binding periplasmic protein K10549 alsB; D-allose transport system substrate-binding protein D CH53_3038 branched-chain amino acid transport system / permease component family protein K10550 alsC; D-allose transport system permease protein D CH53_3039 alsA; D-allose import ATP-binding protein AlsA K10551 alsA; D-allose transport system ATP-binding protein [EC:7.5.2.8] D CH53_834 periplasmic binding domain protein K17202 eryG; erythritol transport system substrate-binding protein D CH53_831 branched-chain amino acid transport system / permease component family protein K17203 eryF; erythritol transport system permease protein D CH53_832 ccmA; heme ABC exporter, ATP-binding protein CcmA K17204 eryE; erythritol transport system ATP-binding protein D CH53_3744 periplasmic binding domain protein K17213 K17213; inositol transport system substrate-binding protein D CH53_3746 branched-chain amino acid transport system / permease component family protein K17214 K17214; inositol transport system permease protein D CH53_3745 ccmA; heme ABC exporter, ATP-binding protein CcmA K17215 K17215; inositol transport system ATP-binding protein D CH53_2044 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D CH53_2045 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D CH53_2046 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D CH53_2047 ugpC; sn-glycerol-3-phosphate import ATP-binding protein UgpC K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D CH53_2823 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D CH53_1756 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D CH53_591 binding--dependent transport system inner membrane component family protein K02037 pstC; phosphate transport system permease protein D CH53_1755 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D CH53_590 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CH53_1754 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CH53_589 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CH53_1753 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CH53_3214 phnD; phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein D CH53_3215 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D CH53_3216 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D CH53_3213 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D CH53_3993 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein D CH53_402 hisM; histidine transport system permease protein hisM K10015 hisM; histidine transport system permease protein D CH53_403 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D CH53_3994 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D CH53_401 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D CH53_404 hisJ; histidine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein D CH53_3995 bacterial extracellular solute-binding s, 3 family protein K10014 hisJ; histidine transport system substrate-binding protein D CH53_3243 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein D CH53_3242 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein D CH53_3241 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D CH53_199 artJ; ABC transporter arginine-binding protein 1 K09996 artJ; arginine transport system substrate-binding protein D CH53_192 lysine-arginine-ornithine-binding periplasmic family protein K09997 artI; arginine transport system substrate-binding protein D CH53_194 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09998 artM; arginine transport system permease protein D CH53_193 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09999 artQ; arginine transport system permease protein D CH53_191 artP; arginine transport ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D CH53_3076 gltI; glutamate/aspartate periplasmic-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D CH53_3074 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein D CH53_3075 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein D CH53_3073 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D CH53_2174 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D CH53_2173 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09970 aapQ; general L-amino acid transport system permease protein D CH53_2172 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09971 aapM; general L-amino acid transport system permease protein D CH53_2171 hypothetical protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D CH53_3594 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D CH53_3595 yecS; inner membrane amino-acid ABC transporter permease protein yecS K10009 tcyB; L-cystine transport system permease protein D CH53_3596 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D CH53_2033 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D CH53_863 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D CH53_2034 livH; high-affinity branched-chain amino acid transport system permease protein livH K01997 livH; branched-chain amino acid transport system permease protein D CH53_2035 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D CH53_2036 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D CH53_2037 livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF K01996 livF; branched-chain amino acid transport system ATP-binding protein D CH53_2749 metQ; D-methionine-binding lipoprotein metQ K02073 metQ; D-methionine transport system substrate-binding protein D CH53_221 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein D CH53_1738 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein D CH53_1740 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D CH53_219 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D CH53_2750 metI; D-methionine transport system permease protein metI K02072 metI; D-methionine transport system permease protein D CH53_1739 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D CH53_220 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D CH53_2751 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D CH53_3218 periplasmic binding domain protein K11959 urtA; urea transport system substrate-binding protein D CH53_857 urea ABC transporter, substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D CH53_3219 urtB; urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D CH53_858 branched-chain amino acid transport system / permease component family protein K11960 urtB; urea transport system permease protein D CH53_3220 urtC; urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D CH53_859 branched-chain amino acid transport system / permease component family protein K11961 urtC; urea transport system permease protein D CH53_3221 urtD; urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D CH53_860 ABC transporter family protein K11962 urtD; urea transport system ATP-binding protein D CH53_3222 urtE; urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein D CH53_3188 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein D CH53_861 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein D CH53_3874 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_3875 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_4049 mppA; periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_3876 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D CH53_3877 oppC; oligopeptide transport system permease protein oppC K15582 oppC; oligopeptide transport system permease protein D CH53_3878 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D CH53_3879 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D CH53_1645 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D CH53_1644 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein D CH53_1643 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein D CH53_1642 hypothetical protein K12371 dppD; dipeptide transport system ATP-binding protein D CH53_1641 hypothetical protein K12372 dppF; dipeptide transport system ATP-binding protein D CH53_4066 bacterial extracellular solute-binding s, 5 Middle family protein K19226 sapA; cationic peptide transport system substrate-binding protein D CH53_4067 sapB; peptide transport system permease protein sapB K19227 sapB; cationic peptide transport system permease protein D CH53_4068 sapC; peptide transport system permease protein sapC K19228 sapC; cationic peptide transport system permease protein D CH53_4069 hypothetical protein K19229 sapD; cationic peptide transport system ATP-binding protein D CH53_4070 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein D CH53_259 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D CH53_260 yejB; inner membrane ABC transporter permease protein yejB K13894 yejB; microcin C transport system permease protein D CH53_261 yejE; inner membrane ABC transporter permease protein yejE K13895 yejE; microcin C transport system permease protein D CH53_262 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein D CH53_2399 periplasmic binding family protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D CH53_2398 fecCD transport family protein K23186 fepD; iron-siderophore transport system permease protein D CH53_2397 fecCD transport family protein K23187 fepG; iron-siderophore transport system permease protein D CH53_2396 ABC transporter family protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D CH53_965 periplasmic binding family protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D CH53_964 fhuB; iron(3+)-hydroxamate import system permease protein fhuB K23228 fhuB; ferric hydroxamate transport system permease protein D CH53_966 fhuC; iron(3+)-hydroxamate import ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D CH53_958 periplasmic binding family protein K06858 btuF; vitamin B12 transport system substrate-binding protein D CH53_4138 fecCD transport family protein K06073 btuC; vitamin B12 transport system permease protein D CH53_4136 ABC transporter family protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D CH53_3806 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein D CH53_3804 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein D CH53_3805 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CH53_4247 periplasmic solute binding family protein K11604 sitA; manganese/iron transport system substrate-binding protein D CH53_4249 ABC 3 transport family protein K11605 sitC; manganese/iron transport system permease protein D CH53_4250 ABC 3 transport family protein K11606 sitD; manganese/iron transport system permease protein D CH53_4248 ABC transporter family protein K11607 sitB; manganese/iron transport system ATP-binding protein D CH53_3385 cbiN; cobalt transport family protein K02009 cbiN; cobalt/nickel transport protein D CH53_3384 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D CH53_3386 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D CH53_3387 cobalt ABC transporter, ATP-binding family protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D CH53_1163 lsrB; autoinducer 2-binding protein lsrB K10555 lsrB; AI-2 transport system substrate-binding protein D CH53_1161 branched-chain amino acid transport system / permease component family protein K10556 lsrC; AI-2 transport system permease protein D CH53_1162 branched-chain amino acid transport system / permease component family protein K10557 lsrD; AI-2 transport system permease protein D CH53_1160 ccmA; heme ABC exporter, ATP-binding protein CcmA K10558 lsrA; AI-2 transport system ATP-binding protein D CH53_539 putative kpsE K10107 kpsE; capsular polysaccharide transport system permease protein D CH53_532 kpsM; polysialic acid transport protein kpsM K09688 kpsM; capsular polysaccharide transport system permease protein D CH53_533 ABC transporter family protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D CH53_3309 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein D CH53_3310 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D CH53_4412 lolE; liporeleasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein D CH53_4414 lolC; lipo-releasing system transmembrane protein lolC K09808 lolC_E; lipoprotein-releasing system permease protein D CH53_4413 lolD; liporeleasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D CH53_448 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D CH53_449 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C D CH53_450 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D CH53_451 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D CH53_1236 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D CH53_1235 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D CH53_2246 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D CH53_2030 ftsX; putative protein insertion permease FtsX K09811 ftsX; cell division transport system permease protein D CH53_2029 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CH53_151 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D CH53_2873 ABC transporter family protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D CH53_2874 mdlB; multidrug resistance-like ATP-binding protein MdlB K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D CH53_3047 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D CH53_1921 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D CH53_3004 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D CH53_172 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D CH53_171 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D CH53_531 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D CH53_178 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D CH53_889 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) [PATH:yin02060] D CH53_526 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D CH53_525 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D CH53_527 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CH53_4424 ptsG; PTS system glucose-specific EIICB component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D CH53_3098 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CH53_2499 PTS system, maltose and glucose-specific subfamily, IIC component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_3956 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_1137 PTS system, sucrose-specific IIBC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D CH53_489 PTS system, beta-glucoside-specific IIABC component family protein K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CH53_276 PTS system, glucose-like IIB component domain protein K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CH53_3952 PTS system, glucose-like IIB component domain protein K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CH53_465 PTS system, glucose-like IIB component domain protein K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-] D CH53_2502 PTS system, alpha-glucoside-specific IIBC component domain protein K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-] D CH53_2233 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D CH53_1387 phosphotransferase system, EIIC family protein K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192] D CH53_3459 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D CH53_1693 mtlA; PTS system mannitol-specific EIICBA component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D CH53_713 chbA; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CH53_3702 chbA; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CH53_1726 PTS system, Lactose/Cellobiose specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CH53_716 chbB; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CH53_1722 PTS system, Lactose/Cellobiose specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CH53_3699 PTS system, Lactose/Cellobiose specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CH53_715 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D CH53_1723 PTS system, lactose/cellobiose IIC component family protein K02761 celB; cellobiose PTS system EIIC component D CH53_3700 PTS system, lactose/cellobiose IIC component family protein K02761 celB; cellobiose PTS system EIIC component D CH53_4353 manX; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CH53_4354 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component D CH53_4355 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component D CH53_867 PTS system, mannose/fructose/sorbose family, IIA component domain protein K02812 sorF; sorbose PTS system EIIA component [EC:2.7.1.206] D CH53_868 sorB; sorbose-specific phosphotransferase enzyme IIB component K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206] D CH53_869 PTS system, mannose/fructose/sorbose, IIC component family protein K02814 sorA; sorbose PTS system EIIC component D CH53_870 PTS system, mannose/fructose/sorbose, IID component family protein K02815 sorM; sorbose PTS system EIID component D CH53_2357 PTS system fructose IIA component family protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D CH53_243 PTS system fructose IIA component family protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D CH53_240 PTS system, mannose/fructose/sorbose, IIB component family protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D CH53_241 PTS system sorbose-specific iic component family protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D CH53_242 PTS system mannose/fructose/sorbose IID component family protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D CH53_2360 agaB; galactosamine-specific PTS system enzyme IIB component K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-] D CH53_2359 PTS system sorbose-specific iic component family protein K10985 agaC; galactosamine PTS system EIIC component D CH53_2358 PTS system, mannose/fructose/sorbose, IID component family protein K10986 agaD; galactosamine PTS system EIID component D CH53_609 PTS system glucitol/sorbitol-specific IIA component family protein K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D CH53_608 srlE; glucitol/sorbitol-specific phosphotransferase enzyme IIB component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198] D CH53_607 srlA; glucitol/sorbitol permease IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component D CH53_394 ptsN1; phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CH53_395 PTS system, Lactose/Cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CH53_396 PTS system sugar-specific permease component family protein K03475 ulaA; ascorbate PTS system EIIC component D CH53_234 phosphocarrier, HPr family protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D CH53_232 PTS system, Fru family, IIB component domain protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D CH53_233 pfkB; phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D CH53_2685 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D CH53_2241 ptsO; phosphocarrier protein NPr K08485 ptsO; phosphocarrier protein NPr D CH53_2243 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:yin03070] D CH53_2343 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D CH53_1421 eprI; type III secretion apparatus needle protein K03221 yscF; type III secretion protein F D CH53_1434 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C D CH53_1418 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J D CH53_1409 epaP; type III secretion apparatus protein, YscR/HrcR family K03226 yscR; type III secretion protein R D CH53_1408 type III secretion, HrpO family protein K03227 yscS; type III secretion protein S D CH53_1407 epaR; type III secretion apparatus protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T D CH53_1406 type III secretion, YscU/HrpY family protein K03229 yscU; type III secretion protein U D CH53_1413 type III secretion, HrcV family protein K03230 yscV; type III secretion protein V D CH53_1412 ATPase, FliI/YscN family protein K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D CH53_1410 epaO; type III secretion apparatus protein, YscQ/HrcQ family K03225 yscQ; type III secretion protein Q D CH53_2656 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D CH53_2665 bacterial chaperone lipo family protein K02465 gspS; general secretion pathway protein S D CH53_2655 type IV pilus biogenesis family protein K02452 gspC; general secretion pathway protein C D CH53_2658 type II secretion system (T2SS), F family protein K02455 gspF; general secretion pathway protein F D CH53_2659 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D CH53_2660 type II secretion system (T2SS), I family protein K02458 gspI; general secretion pathway protein I D CH53_2661 gspJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J D CH53_2662 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K D CH53_2663 gspL periplasmic domain protein K02461 gspL; general secretion pathway protein L D CH53_2657 epsE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D CH53_2666 type IV leader peptidase family protein K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D CH53_2834 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CH53_2835 secF; export membrane protein secF K03074 secF; preprotein translocase subunit SecF D CH53_2089 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CH53_1284 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CH53_1468 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CH53_2833 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CH53_1735 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CH53_1009 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CH53_1010 secretion monitor family protein K13301 secM; secretion monitor D CH53_2028 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CH53_1875 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D CH53_809 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CH53_2062 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D CH53_2063 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D CH53_2064 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D CH53_3057 tatA; twin arginine-targeting translocase, TatA/E family protein K03425 tatE; sec-independent protein translocase protein TatE D CH53_3831 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D CH53_2136 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D CH53_3832 hypothetical protein K11016 shlA; hemolysin D CH53_3417 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D CH53_2555 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D CH53_3412 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D CH53_906 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D CH53_2550 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D CH53_2551 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D CH53_3426 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D CH53_3422 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D CH53_2554 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D CH53_3410 type IV/VI secretion system, DotU family domain protein K11892 impK; type VI secretion system protein ImpK D CH53_2553 type VI secretion system peptidoglycan-associated domain protein K11892 impK; type VI secretion system protein ImpK D CH53_3414 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D CH53_2543 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG B B 09132 Signal transduction C 02020 Two-component system [PATH:yin02020] D CH53_2822 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CH53_2821 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CH53_4016 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D CH53_2823 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D CH53_1756 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D CH53_4407 phoQ; virulence sensor histidine kinase phoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CH53_4406 phoP; transcriptional regulatory protein phoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D CH53_1557 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D CH53_1558 ompR; transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D CH53_334 ompC; outer membrane protein C K09475 ompC; outer membrane pore protein C D CH53_132 gram-negative porin family protein K09476 ompF; outer membrane pore protein F D CH53_1880 cpxA; sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D CH53_1881 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR D CH53_2293 hypothetical protein K25864 mzrA; modulator protein MzrA D CH53_4031 HAMP domain protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D CH53_4030 response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA D CH53_955 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D CH53_2631 HAMP domain protein K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D CH53_2630 response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D CH53_602 HAMP domain protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D CH53_603 response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR D CH53_599 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D CH53_600 MMPL family protein K07788 mdtB; multidrug efflux pump D CH53_601 acrB/AcrD/AcrF family protein K07789 mdtC; multidrug efflux pump D CH53_562 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18324 acrD; multidrug efflux pump D CH53_1293 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D CH53_1292 hypothetical protein K07771 basR; two-component system, OmpR family, response regulator BasR D CH53_4135 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D CH53_2393 copper binding periplasmic CusF family protein K07810 cusF; Cu(I)/Ag(I) efflux system periplasmic protein CusF D CH53_2391 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D CH53_2390 heavy metal efflux pump, CzcA family protein K07787 cusA; copper/silver efflux system protein D CH53_3532 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D CH53_3034 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D CH53_3533 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D CH53_3035 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D CH53_3590 hypothetical protein K02406 fliC; flagellin D CH53_3591 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D CH53_3534 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CH53_3122 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CH53_3121 kdpE; KDP operon transcriptional regulatory protein kdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CH53_3125 kdpA; K+-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D CH53_3124 kdpB; K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D CH53_3123 kdpC; K+-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit D CH53_236 cytochrome c554 and c-prime family protein K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D CH53_2271 sensory box protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D CH53_1088 hypothetical protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D CH53_1166 HAMP domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D CH53_1167 hypothetical protein K07774 tctD; two-component system, OmpR family, response regulator TctD D CH53_1170 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D CH53_1169 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D CH53_1168 tripartite tricarboxylate transporter receptor family protein K07795 tctC; putative tricarboxylic transport membrane protein D CH53_1731 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CH53_991 TonB-dependent siderophore receptor family protein K19611 fepA; ferric enterobactin receptor D CH53_3445 dpiB; sensor histidine kinase DpiB K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3] D CH53_3444 dpiA; transcriptional regulatory protein DpiA K07702 dpiA; two-component system, CitB family, response regulator CitB D CH53_3446 citC; [citrate (pro-3S)-lyase] ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22] D CH53_3447 citD; citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein) D CH53_3448 citE; citrate (pro-3S)-lyase, beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D CH53_3449 citF; citrate lyase, alpha subunit K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10] D CH53_3450 citX; holo-ACP synthase CitX K05964 citX; holo-ACP synthase [EC:2.7.7.61] D CH53_3451 citG; triphosphoribosyl-dephospho-CoA synthase CitG K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D CH53_3452 citT; citrate carrier K09477 citT; citrate:succinate antiporter D CH53_3691 PAS fold family protein K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3] D CH53_3690 dcuR; transcriptional regulatory protein dcuR K07703 dcuR; two-component system, CitB family, response regulator DcuR D CH53_803 transporter, anaerobic C4-dicarboxylate uptake family protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D CH53_3292 malic enzyme, NAD binding domain protein K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D CH53_3689 2-hydroxycarboxylate transporter family protein K11616 maeN; malate:Na+ symporter D CH53_3727 narX; nitrate/nitrite sensor protein narX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D CH53_3681 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D CH53_560 bacterial regulatory s, luxR family protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D CH53_3684 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D CH53_3685 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D CH53_3687 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D CH53_3686 narJ; nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW D CH53_1353 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D CH53_1354 frdB; fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D CH53_1355 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C D CH53_1356 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D D CH53_1648 phosphoglycerate transporter family protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D CH53_3441 major Facilitator Superfamily protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D CH53_1649 histidine kinase family protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D CH53_1650 uhpA; transcriptional regulatory protein uhpA K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D CH53_3442 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D CH53_3443 bacterial regulatory s, luxR family protein K20264 fusR; two-component system, NarL family, response regulator FusR D CH53_2748 putative protein rcsF K06080 rcsF; RcsF protein D CH53_338 rcsC Alpha-Beta-Loop family protein K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D CH53_336 hpt domain protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D CH53_337 rcsB; rcsB protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D CH53_954 HAMP domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D CH53_3620 uvrY; response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D CH53_820 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D CH53_2563 evgS; sensor protein evgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D CH53_3165 his Kinase A domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D CH53_3435 hpt domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D CH53_2562 evgA; positive transcription regulator evgA K07690 evgA; two-component system, NarL family, response regulator EvgA D CH53_3166 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D CH53_3436 bvgA; virulence factors putative positive transcription regulator BvgA K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D CH53_1603 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D CH53_3514 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_93 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_1962 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2449 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2452 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2453 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_3512 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_94 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_319 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_2546 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_3432 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1628 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1961 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_2385 putative tight adherance operon protein K02279 cpaB; pilus assembly protein CpaB D CH53_2384 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D CH53_2382 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D CH53_2381 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CH53_2380 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D CH53_2378 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D CH53_2718 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D CH53_662 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D CH53_1808 glnL; nitrogen regulation protein NR K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D CH53_1807 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D CH53_1809 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CH53_3464 his Kinase A domain protein K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] D CH53_3463 zraR; transcriptional regulatory protein zraR K07713 zraR; two-component system, NtrC family, response regulator HydG D CH53_3465 zraP; zinc resistance-associated protein K07803 zraP; zinc resistance-associated protein D CH53_2129 sensory box protein K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3] D CH53_2128 bacterial regulatory, Fis family protein K07714 atoC; two-component system, NtrC family, response regulator AtoC D CH53_2127 atoD; acetate CoA-transferase subunit alpha K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D CH53_2126 atoA; acetate CoA-transferase subunit beta K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D CH53_2125 atoE; short-chain fatty acids transporter K02106 atoE; short-chain fatty acids transporter D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CH53_1623 dctA; aerobic C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D CH53_2245 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CH53_666 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D CH53_664 AAA domain family protein K07715 glrR; two-component system, NtrC family, response regulator GlrR D CH53_2405 hybO; hydrogenase-2 small chain K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D CH53_2408 hybC; hydrogenase-2 large chain K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D CH53_3540 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CH53_3616 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_1389 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_2400 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_3105 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_1741 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_300 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_3538 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D CH53_2670 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D CH53_1684 methyl-accepting chemotaxis (MCP) signaling domain protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D CH53_3527 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D CH53_3539 tap; methyl-accepting chemotaxis protein IV K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D CH53_4393 sensory box protein K03776 aer; aerotaxis receptor D CH53_3537 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D CH53_3536 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CH53_3542 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CH53_3541 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CH53_3399 response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CH53_28 his Kinase A domain protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D CH53_29 bacterial regulatory s, luxR family protein K13041 ttrR; two-component system, LuxR family, response regulator TtrR D CH53_25 molybdopterin oxidoreductase family protein K08357 ttrA; tetrathionate reductase subunit A D CH53_27 4Fe-4S dicluster domain protein K08358 ttrB; tetrathionate reductase subunit B D CH53_26 polysulfide reductase, NrfD family protein K08359 ttrC; tetrathionate reductase subunit C D CH53_1436 HAMP domain protein K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA D CH53_1437 bacterial regulatory s, luxR family protein K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB D CH53_3073 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D CH53_3074 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein D CH53_3075 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein D CH53_3076 gltI; glutamate/aspartate periplasmic-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D CH53_1519 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CH53_1833 enoyl-CoA hydratase/isomerase family protein K13816 rpfF; DSF synthase D CH53_46 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D CH53_2580 glsA; glutaminase A K01425 glsA; glutaminase [EC:3.5.1.2] D CH53_3730 bacterial Cytochrome Ubiquinol Oxidase family protein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D CH53_3147 cydA; cytochrome d ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D CH53_3729 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D CH53_3148 cydB; cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D CH53_3149 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D CH53_3939 type I secretion system ATPase family protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB D CH53_3940 type I secretion membrane fusion, HlyD family protein K12532 rtxD; membrane fusion protein, RTX toxin transport system D CH53_3941 type I secretion system ATPase family protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D CH53_2343 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D CH53_1974 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CH53_1975 nucleotide sugar dehydrogenase family protein K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D CH53_1141 pemA; pectinesterase A K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D CH53_3549 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D CH53_1265 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D CH53_2573 beta-eliminating lyase family protein K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:yin02024] D CH53_812 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D CH53_1338 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D CH53_3899 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D CH53_3898 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D CH53_801 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CH53_4122 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CH53_3167 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CH53_666 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D CH53_664 AAA domain family protein K07715 glrR; two-component system, NtrC family, response regulator GlrR D CH53_3532 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D CH53_3034 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D CH53_3533 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D CH53_3035 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D CH53_3121 kdpE; KDP operon transcriptional regulatory protein kdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CH53_3442 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D CH53_3443 bacterial regulatory s, luxR family protein K20264 fusR; two-component system, NarL family, response regulator FusR D CH53_48 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CH53_47 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D CH53_1163 lsrB; autoinducer 2-binding protein lsrB K10555 lsrB; AI-2 transport system substrate-binding protein D CH53_1161 branched-chain amino acid transport system / permease component family protein K10556 lsrC; AI-2 transport system permease protein D CH53_1162 branched-chain amino acid transport system / permease component family protein K10557 lsrD; AI-2 transport system permease protein D CH53_1160 ccmA; heme ABC exporter, ATP-binding protein CcmA K10558 lsrA; AI-2 transport system ATP-binding protein D CH53_1158 lsrK; autoinducer 2 kinase LsrK K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189] D CH53_1159 lsrR; transcriptional regulator lsrR K11531 lsrR; lsr operon transcriptional repressor D CH53_1164 hypothetical protein K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245] D CH53_1165 lsrG; autoinducer 2-degrading protein lsrG K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32] D CH53_2033 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D CH53_863 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D CH53_2034 livH; high-affinity branched-chain amino acid transport system permease protein livH K01997 livH; branched-chain amino acid transport system permease protein D CH53_2035 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D CH53_2036 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D CH53_2037 livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF K01996 livF; branched-chain amino acid transport system ATP-binding protein D CH53_195 iclR helix-turn-helix domain protein K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor D CH53_198 attM; N-acyl homoserine lactonase AttM K13075 ahlD; N-acyl homoserine lactone hydrolase [EC:3.1.1.81] D CH53_2504 esaI; acyl-homoserine-lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D CH53_45 esaI; acyl-homoserine-lactone synthase K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D CH53_44 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D CH53_2505 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D CH53_1625 pelY; periplasmic pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2] D CH53_1833 enoyl-CoA hydratase/isomerase family protein K13816 rpfF; DSF synthase D CH53_1834 diguanylate cyclase domain protein K14051 gmr; c-di-GMP phosphodiesterase Gmr [EC:3.1.4.52] D CH53_1032 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_3819 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_2480 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_1519 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CH53_2153 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D CH53_3912 ribA; GTP cyclohydrolase-2 K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D CH53_2838 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CH53_2949 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CH53_3874 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_3875 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_4049 mppA; periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_3876 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D CH53_3877 oppC; oligopeptide transport system permease protein oppC K15582 oppC; oligopeptide transport system permease protein D CH53_3878 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D CH53_3879 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D CH53_1244 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CH53_736 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CH53_882 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CH53_1245 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CH53_735 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CH53_881 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CH53_1246 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CH53_734 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CH53_880 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CH53_733 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CH53_1247 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CH53_879 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CH53_732 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CH53_1248 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CH53_878 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CH53_1735 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CH53_2089 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CH53_1284 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CH53_1468 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CH53_2833 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CH53_1009 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CH53_2028 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CH53_1875 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D CH53_809 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:yin02030] D CH53_3616 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_1389 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_2400 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_3105 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_1741 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_300 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_3538 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D CH53_2670 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D CH53_1684 methyl-accepting chemotaxis (MCP) signaling domain protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D CH53_3527 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D CH53_3539 tap; methyl-accepting chemotaxis protein IV K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D CH53_4393 sensory box protein K03776 aer; aerotaxis receptor D CH53_2143 malE; maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D CH53_4236 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein D CH53_1789 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein D CH53_3270 mglB; D-galactose-binding periplasmic protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D CH53_1645 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D CH53_3536 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CH53_3537 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D CH53_3542 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CH53_3543 cheZ; protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D CH53_3541 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CH53_3399 response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CH53_3540 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CH53_3573 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CH53_3567 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CH53_3566 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CH53_3534 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CH53_3535 motB; motility protein B K02557 motB; chemotaxis protein MotB D CH53_2403 ompA family protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:yin02040] D CH53_3575 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D CH53_3574 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D CH53_3573 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CH53_3572 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D CH53_3571 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CH53_3570 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D CH53_3569 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK D CH53_3568 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D CH53_3567 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CH53_3566 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CH53_3565 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D CH53_3564 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D CH53_3563 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CH53_3562 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D CH53_3547 flhE; flagellar protein flhE K03516 flhE; flagellar protein FlhE D CH53_2402 FHIPEP family protein K02400 flhA; flagellar biosynthesis protein FlhA D CH53_3545 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CH53_3544 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D CH53_3550 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D CH53_3551 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D CH53_3552 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D CH53_3553 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD D CH53_3554 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE D CH53_3555 flgF; flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF D CH53_3556 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D CH53_3557 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH D CH53_3558 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI D CH53_3559 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D CH53_3560 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D CH53_3561 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D CH53_3590 hypothetical protein K02406 fliC; flagellin D CH53_3589 fliD; flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D CH53_3588 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D CH53_3587 fliT; flagellar protein FliT K02423 fliT; flagellar protein FliT D CH53_3534 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CH53_3535 motB; motility protein B K02557 motB; chemotaxis protein MotB D CH53_2403 ompA family protein K02557 motB; chemotaxis protein MotB D CH53_3549 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D CH53_3548 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D CH53_3594 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D CH53_3592 fliZ; flagellar regulatory protein FliZ K02425 fliZ; regulator of sigma S factor FliZ D CH53_2324 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D CH53_3532 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D CH53_3034 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D CH53_3533 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D CH53_3035 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D CH53_2245 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CH53_3591 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D CH53_949 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:yin04980] D CH53_4253 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-] D CH53_4252 hypothetical protein K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D CH53_2131 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection D CH53_2322 invasin K13735 yeeJ; adhesin/invasin D CH53_761 hypothetical protein K13735 yeeJ; adhesin/invasin D CH53_52 hypothetical protein K13735 yeeJ; adhesin/invasin C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells D CH53_2322 invasin K13735 yeeJ; adhesin/invasin D CH53_761 hypothetical protein K13735 yeeJ; adhesin/invasin D CH53_52 hypothetical protein K13735 yeeJ; adhesin/invasin B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:yin01501] D CH53_132 gram-negative porin family protein K09476 ompF; outer membrane pore protein F D CH53_334 ompC; outer membrane protein C K09475 ompC; outer membrane pore protein C D CH53_2857 AmpG-like permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D CH53_4419 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D CH53_1384 hypothetical protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D CH53_1602 ampR; HTH-type transcriptional activator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D CH53_1603 beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D CH53_3874 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_3875 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_4049 mppA; periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_3876 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D CH53_3877 oppC; oligopeptide transport system permease protein oppC K15582 oppC; oligopeptide transport system permease protein D CH53_3878 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D CH53_3879 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D CH53_3963 bla; beta-lactamase Toho-1 K17836 penP; beta-lactamase class A [EC:3.5.2.6] D CH53_2890 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D CH53_2889 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D CH53_2343 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D CH53_1549 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CH53_3064 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CH53_1024 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CH53_4362 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:yin01502] D CH53_1016 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CH53_2797 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CH53_3839 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CH53_2158 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CH53_1022 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CH53_1021 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CH53_1018 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:yin01503] D CH53_4407 phoQ; virulence sensor histidine kinase phoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CH53_4406 phoP; transcriptional regulatory protein phoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D CH53_1651 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D CH53_4365 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D CH53_4135 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D CH53_4134 glycosyltransferase like 2 family protein K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D CH53_4133 3-beta hydroxysteroid dehydrogenase/isomerase family protein K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D CH53_4132 polysaccharide deacetylase family protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D CH53_4131 dolichyl-phosphate-mannose-mannosyltransferase family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D CH53_4130 small Multidrug Resistance family protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D CH53_4129 eamA-like transporter family protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF D CH53_1293 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D CH53_1292 hypothetical protein K07771 basR; two-component system, OmpR family, response regulator BasR D CH53_4090 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D CH53_4066 bacterial extracellular solute-binding s, 5 Middle family protein K19226 sapA; cationic peptide transport system substrate-binding protein D CH53_4067 sapB; peptide transport system permease protein sapB K19227 sapB; cationic peptide transport system permease protein D CH53_4068 sapC; peptide transport system permease protein sapC K19228 sapC; cationic peptide transport system permease protein D CH53_4069 hypothetical protein K19229 sapD; cationic peptide transport system ATP-binding protein D CH53_4070 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein D CH53_1609 prtA; secreted protease A K01406 prtC; serralysin [EC:3.4.24.40] D CH53_3001 prtA; secreted protease A K01406 prtC; serralysin [EC:3.4.24.40] D CH53_3002 prtA; secreted protease A K01406 prtC; serralysin [EC:3.4.24.40] D CH53_2745 hypothetical protein K06079 cutF; copper homeostasis protein (lipoprotein) D CH53_1880 cpxA; sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D CH53_1881 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR D CH53_2697 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CH53_1341 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CH53_4110 L,D-transpeptidase catalytic domain protein K19236 ycfS; L,D-transpeptidase YcfS D CH53_955 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D CH53_893 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D CH53_1802 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D CH53_1526 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CH53_2890 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D CH53_2889 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D CH53_2343 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D CH53_2732 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D CH53_3830 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:yin01000] C 01001 Protein kinases [BR:yin01001] D CH53_4378 lipopolysaccharide kinase family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D CH53_2163 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CH53_81 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D CH53_2822 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CH53_4407 phoQ; virulence sensor histidine kinase phoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CH53_1557 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D CH53_4031 HAMP domain protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D CH53_1880 cpxA; sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D CH53_2631 HAMP domain protein K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D CH53_602 HAMP domain protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D CH53_1293 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D CH53_3122 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CH53_2271 sensory box protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D CH53_1166 HAMP domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D CH53_528 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D CH53_3727 narX; nitrate/nitrite sensor protein narX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D CH53_1649 histidine kinase family protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D CH53_3442 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D CH53_336 hpt domain protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D CH53_338 rcsC Alpha-Beta-Loop family protein K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D CH53_954 HAMP domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D CH53_2563 evgS; sensor protein evgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D CH53_3165 his Kinase A domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D CH53_3435 hpt domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D CH53_3445 dpiB; sensor histidine kinase DpiB K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3] D CH53_3691 PAS fold family protein K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3] D CH53_1581 histidine kinase family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D CH53_501 5TMR of 5TMR-LYT family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D CH53_1808 glnL; nitrogen regulation protein NR K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D CH53_3464 his Kinase A domain protein K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] D CH53_2129 sensory box protein K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3] D CH53_666 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D CH53_3536 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CH53_28 his Kinase A domain protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D CH53_1436 HAMP domain protein K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA C 01009 Protein phosphatases and associated proteins [BR:yin01009] D CH53_1887 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CH53_2903 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG D CH53_1112 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:yin01002] D CH53_1070 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CH53_2666 type IV leader peptidase family protein K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D CH53_2386 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D CH53_299 pla; coagulase/fibrinolysin K08566 pla; plasminogen activator [EC:3.4.23.48] D CH53_2409 hybD; hydrogenase expression/formation protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D CH53_3277 hycI; hydrogenase maturation peptidase HycI K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51] D CH53_3136 pcp; pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D CH53_620 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CH53_257 spr; lipoprotein spr K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D CH53_4096 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D CH53_4128 nlpC/P60 family protein K13695 nlpC; probable lipoprotein NlpC D CH53_406 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CH53_2269 glutamine amidotransferases class-II family protein K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D CH53_1766 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CH53_3092 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D CH53_2847 yajL; chaperone protein YajL K03152 thiJ; protein deglycase [EC:3.5.1.124] D CH53_4110 L,D-transpeptidase catalytic domain protein K19236 ycfS; L,D-transpeptidase YcfS D CH53_137 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB D CH53_3174 CAAX protease self-immunity family protein K07052 K07052; CAAX protease family protein D CH53_129 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D CH53_1611 peptidase M3 family protein K01414 prlC; oligopeptidase A [EC:3.4.24.70] D CH53_1609 prtA; secreted protease A K01406 prtC; serralysin [EC:3.4.24.40] D CH53_3001 prtA; secreted protease A K01406 prtC; serralysin [EC:3.4.24.40] D CH53_3002 prtA; secreted protease A K01406 prtC; serralysin [EC:3.4.24.40] D CH53_2996 D-alanyl-D-alanine carboxypeptidase family protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D CH53_2693 insulinase family protein K01407 ptrA; protease III [EC:3.4.24.55] D CH53_1622 pqqL; insulinase family protease K07263 pqqL; zinc protease [EC:3.4.24.-] D CH53_1237 pepA; cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D CH53_639 peptidase family protein K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D CH53_565 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D CH53_2427 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D CH53_4409 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D CH53_2799 pepD; Xaa-His dipeptidase family protein K01270 pepD; dipeptidase D [EC:3.4.13.-] D CH53_62 allC; allantoate amidohydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D CH53_2772 amidase, hydantoinase/carbamoylase family protein K02083 allC; allantoate deiminase [EC:3.5.3.9] D CH53_3807 lysM domain protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D CH53_2719 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D CH53_2072 metallopeptidase M24 family protein K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D CH53_2617 hypothetical protein K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D CH53_940 peptidase M20/M25/M40 family protein K09612 iap; alkaline phosphatase isozyme conversion protein [EC:3.4.11.-] D CH53_4032 carboxypeptidase Taq (M32) metallopeptidase family protein K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D CH53_1287 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CH53_4274 htpX; protease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D CH53_2603 peptidase M48 family protein K07387 K07387; metalloprotease [EC:3.4.24.-] D CH53_580 peptidase M48 family protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D CH53_2727 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D CH53_433 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D CH53_3507 mtfA; protein mtfA K09933 mtfA; MtfA peptidase D CH53_4034 trypsin family protein K04775 ydgD; protease YdgD [EC:3.4.21.-] D CH53_955 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D CH53_2260 peptidase Do family protein K04772 degQ; serine protease DegQ [EC:3.4.21.-] D CH53_2259 degS; periplasmic serine peptidase DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-] D CH53_4342 hypothetical protein K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D CH53_216 dacC; D-alanyl-D-alanine carboxypeptidase dacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CH53_3061 dacA; D-alanyl-D-alanine carboxypeptidase dacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CH53_3207 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D CH53_303 putative enzyme K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D CH53_1291 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D CH53_2861 clpP; ATP-dependent Clp endopeptidase, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D CH53_2863 lon; endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D CH53_117 hypothetical protein K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-] D CH53_2151 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CH53_4390 umuD; protein umuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D CH53_681 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CH53_4339 pip; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D CH53_4275 prc; tail-specific protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D CH53_3852 sppA; signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-] D CH53_3906 serine dehydrogenase ase family protein K04774 sohB; serine protease SohB [EC:3.4.21.-] D CH53_1572 glpG; rhomboid family protease GlpG K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D CH53_1901 hslV; ATP-dependent protease HslVU, peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D CH53_2828 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D CH53_605 peptidase U32 family protein K08303 prtC; U32 family peptidase [EC:3.4.-.-] D CH53_1271 peptidase U32 family protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D CH53_1270 hypothetical protein K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D CH53_2216 modulator of DNA gyrase family protein K03592 pmbA; PmbA protein D CH53_2207 modulator of DNA gyrase family protein K03568 tldD; TldD protein D CH53_344 ecotin family protein K08276 eco; ecotin D CH53_636 alpha-2-macroglobulin family protein K06894 yfhM; alpha-2-macroglobulin D CH53_1335 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC D CH53_1336 hflK; HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:yin01003] D CH53_1577 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D CH53_1635 bcsA; cellulose synthase catalytic subunit UDP-forming K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12] D CH53_2273 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CH53_635 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D CH53_967 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D CH53_1549 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CH53_1983 glycosyltransferase, WecB/TagA/CpsF family protein K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D CH53_1981 4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D CH53_1972 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D CH53_37 glycosyl transferase 21 family protein K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] D CH53_2809 glycosyltransferase 36 associated family protein K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397] D CH53_3718 pgaC; poly-beta-1,6 N-acetyl-D-glucosamine synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:yin01005] D CH53_2732 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D CH53_3830 lpxA; acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D CH53_2733 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D CH53_1012 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D CH53_2730 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D CH53_2932 lpxH; UDP-2,3-diacylglucosamine diphosphatase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D CH53_150 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D CH53_30 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D CH53_3808 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D CH53_2176 lpxL; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase family protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D CH53_256 yeiU; inner membrane protein yeiU K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D CH53_1863 glycosyl transferases group 1 family protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D CH53_4131 dolichyl-phosphate-mannose-mannosyltransferase family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D CH53_4365 antimicrobial peptide resistance and lipid A acylation PagP family protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D CH53_4090 hypothetical protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D CH53_1651 hypothetical protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D CH53_3768 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D CH53_144 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D CH53_2249 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D CH53_2250 sugar isomerase, KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D CH53_1865 waaC; lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D CH53_1862 glycosyltransferase like 2 family protein K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-] D CH53_1866 waaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D CH53_1157 rfaQ; putative lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] D CH53_2784 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D CH53_2752 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D CH53_2336 rfaE1; bifunctional protein RfaE, domain I K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D CH53_1867 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D CH53_2911 glycosyl transferase 4 family protein K13007 wbpL; glycosyltransferase WbpL [EC:2.4.1.-] D CH53_1982 wzyE family protein K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27] D CH53_1972 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:yin01011] D CH53_2258 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CH53_2080 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CH53_1017 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CH53_1020 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CH53_1023 murE; UDP-N-acetylmuramyl-tripeptide synthetase family protein K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CH53_1016 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CH53_2797 D-alanine--D-alanine ligase family protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CH53_3839 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CH53_2158 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CH53_1934 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CH53_1021 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CH53_1018 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CH53_2331 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CH53_211 PAP2 superfamily protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CH53_3787 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D CH53_1549 penicillin-binding, 1A family protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CH53_967 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D CH53_635 pbpC; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D CH53_3064 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CH53_1024 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CH53_4362 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CH53_216 dacC; D-alanyl-D-alanine carboxypeptidase dacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CH53_3061 dacA; D-alanyl-D-alanine carboxypeptidase dacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CH53_1291 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D CH53_303 putative enzyme K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D CH53_3207 D-alanyl-D-alanine carboxypeptidase family protein K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D CH53_2273 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D CH53_4110 L,D-transpeptidase catalytic domain protein K19236 ycfS; L,D-transpeptidase YcfS D CH53_137 L,D-transpeptidase catalytic domain protein K21470 ycbB; L,D-transpeptidase YcbB D CH53_433 penicillin-insensitive murein endopeptidase family protein K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D CH53_4096 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D CH53_257 spr; lipoprotein spr K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D CH53_3807 lysM domain protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D CH53_2996 D-alanyl-D-alanine carboxypeptidase family protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D CH53_1094 soluble lytic murein transglycosylase L domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CH53_2701 mltA; membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D CH53_482 mltB; lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D CH53_3826 lytic murein transglycosylase family protein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D CH53_2575 hypothetical protein K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D CH53_767 lysM domain protein K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D CH53_4246 transglycosylase SLT domain protein K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29] D CH53_669 bacterial extracellular solute-binding s, 3 family protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D CH53_2 yceG-like family protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D CH53_3062 rlpA; rare lipoA family protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CH53_2697 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CH53_1341 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CH53_4270 N-acetylmuramoyl-L-alanine amidase family protein K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CH53_999 N-acetylmuramoyl-L-alanine amidase family protein K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] D CH53_4109 lpp; major outer membrane lipoprotein Lpp K06078 lpp; murein lipoprotein C 01004 Lipid biosynthesis proteins [BR:yin01004] D CH53_7 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CH53_8 fabH; 3-oxoacyl-[acyl-carrier-] synthase III family protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CH53_774 hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CH53_428 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D CH53_771 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_4 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_887 hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_120 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CH53_772 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_6 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_884 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_4017 short chain dehydrogenase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CH53_118 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D CH53_2731 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CH53_1737 NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D CH53_2927 GDSL-like Lipase/Acylhydrolase family protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D CH53_2877 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D CH53_3887 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D CH53_2867 tesC; long-chain acyl-CoA thioesterase tesC K12500 tesC; thioesterase III [EC:3.1.2.-] D CH53_1439 acs; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D CH53_1032 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_3819 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_2480 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_2149 plsB; glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D CH53_9 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CH53_2329 plsY; acyl-phosphate glycerol 3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D CH53_2362 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:yin01008] D CH53_3456 4'-phosphopantetheinyl transferase superfamily protein K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] C 01006 Prenyltransferases [BR:yin01006] D CH53_2844 ispA; farnesyl diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D CH53_1298 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D CH53_2725 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CH53_1339 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CH53_1899 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D CH53_2148 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D CH53_2851 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:yin01007] D CH53_515 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CH53_3099 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CH53_972 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D CH53_4079 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CH53_1537 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CH53_2934 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CH53_3788 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CH53_3300 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CH53_1071 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CH53_1239 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CH53_3070 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CH53_2639 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CH53_3796 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CH53_131 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CH53_628 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CH53_1696 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D CH53_1695 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D CH53_164 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CH53_2746 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CH53_4147 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CH53_821 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CH53_4143 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CH53_4142 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CH53_133 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D CH53_1706 aminotransferase class I and II family protein K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D CH53_384 hypothetical protein K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D CH53_498 aminotransferase class I and II family protein K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D CH53_2159 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D CH53_2774 cys/Met metabolism PLP-dependent enzyme family protein K14287 ybdL; methionine transaminase [EC:2.6.1.88] D CH53_3331 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CH53_1868 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D CH53_3185 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D CH53_3955 C-S lyase family protein K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CH53_1521 astC; succinylornithine transaminase family protein K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D CH53_3733 astC; succinylornithine transaminase family protein K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D CH53_3183 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D CH53_962 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D CH53_1952 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CH53_157 serC; phosphoserine transaminase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D CH53_2771 putative ureidoglycine-glyoxylate aminotransferase K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112] D CH53_4135 beta-eliminating lyase family protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D CH53_1979 wecE; TDP-4-keto-6-deoxy-D-glucose transaminase family protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:yin00194] D CH53_1768 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CH53_1769 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CH53_1770 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CH53_1771 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CH53_1772 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CH53_1773 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CH53_1774 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CH53_1775 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CH53_1776 ATP synthase I chain family protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:yin03000] D CH53_3948 helix-turn-helix domain protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D CH53_1101 rhaR; HTH-type transcriptional activator rhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D CH53_1102 helix-turn-helix domain protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D CH53_712 chbR; HTH-type transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D CH53_2523 helix-turn-helix domain protein K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D CH53_1091 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D CH53_2991 melR; melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D CH53_2943 helix-turn-helix domain protein K25495 nimR; AraC family transcriptional regulator, regulator of nimT D CH53_3371 helix-turn-helix domain protein K27259 pocR; AraC family transcriptional regulator, pdu and cob operon regulator D CH53_4383 helix-turn-helix domain protein K07506 K07506; AraC family transcriptional regulator D CH53_1879 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CH53_740 helix-turn-helix domain protein K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D CH53_2706 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CH53_4011 lysR substrate binding domain protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D CH53_1956 bacterial regulatory helix-turn-helix, lysR family protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D CH53_2050 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D CH53_1074 nhaR; transcriptional activator protein nhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D CH53_1929 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D CH53_2611 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D CH53_1033 putative HTH-type transcriptional regulator leuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D CH53_73 allS; HTH-type transcriptional activator AllS K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon D CH53_3909 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D CH53_3726 bacterial regulatory helix-turn-helix, lysR family protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D CH53_877 dsdC; D-serine deaminase transcriptional activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator D CH53_1602 ampR; HTH-type transcriptional activator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D CH53_2947 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D CH53_3019 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D CH53_2208 bacterial regulatory helix-turn-helix, lysR family protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D CH53_1946 bacterial regulatory helix-turn-helix, lysR family protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D CH53_213 deoR-like helix-turn-helix domain protein K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D CH53_1573 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D CH53_238 deoR-like helix-turn-helix domain protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D CH53_846 bacterial regulatory s, gntR family protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D CH53_849 deoR-like helix-turn-helix domain protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D CH53_612 deoR-like helix-turn-helix domain protein K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor D CH53_3404 deoR-like helix-turn-helix domain protein K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D CH53_3524 bacterial regulatory s, lacI family protein K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D CH53_2676 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CH53_3462 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CH53_3269 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CH53_1661 helix-turn-helix domain protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CH53_1792 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CH53_1903 bacterial regulatory s, lacI family protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D CH53_1029 fruR; fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D CH53_1139 D-fructose-responsive transcription factor family protein K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D CH53_2232 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D CH53_466 helix-turn-helix family protein K03487 ascG; LacI family transcriptional regulator, asc operon repressor D CH53_4099 bacterial regulatory s, lacI family protein K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D CH53_1589 gntR; HTH-type transcriptional regulator gntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D CH53_364 idnR; HTH-type transcriptional regulator idnR K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator D CH53_3957 bacterial regulatory s, lacI family protein K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein D CH53_2503 hypothetical protein K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator D CH53_1720 UTRA domain protein K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator D CH53_1253 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D CH53_3741 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D CH53_3954 UTRA domain protein K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor D CH53_3836 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D CH53_996 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CH53_253 bacterial regulatory s, gntR family protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D CH53_2296 bacterial regulatory s, gntR family protein K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D CH53_1716 bacterial regulatory s, gntR family protein K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor D CH53_3978 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D CH53_2891 acrR; HTH-type transcriptional regulator AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D CH53_1854 slmA; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator D CH53_4091 nemR; HTH-type transcriptional repressor nemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D CH53_3028 bacterial regulatory s, tetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D CH53_1930 fabR; HTH-type transcriptional repressor fabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D CH53_3202 bacterial regulatory s, tetR family protein K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D CH53_1780 asnC; regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D CH53_3520 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CH53_168 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CH53_2644 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CH53_3992 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CH53_2872 asnC-type helix-turn-helix domain protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D CH53_44 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D CH53_2505 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D CH53_1570 malT; HTH-type transcriptional regulator malT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D CH53_4084 winged helix DNA-binding domain protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D CH53_2766 winged helix DNA-binding domain protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D CH53_2922 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CH53_1460 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D CH53_2486 merR regulatory family protein K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes D CH53_3103 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CH53_2153 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D CH53_2130 iclR; acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D CH53_71 iclR helix-turn-helix domain protein K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons D CH53_4271 kdgR; pectin degradation repressor protein kdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D CH53_195 iclR helix-turn-helix domain protein K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor D CH53_4233 yiaJ; HTH-type transcriptional regulator yiaJ K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor D CH53_1519 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CH53_4023 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D CH53_647 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D CH53_1332 nsrR; HTH-type transcriptional repressor nsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D CH53_3985 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CH53_3041 rpiR; HTH-type transcriptional regulator rpiR K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon D CH53_1385 SIS domain protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor D CH53_3810 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D CH53_2500 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D CH53_2081 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CH53_2188 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CH53_1093 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D CH53_1176 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator D CH53_1301 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator D CH53_1818 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator D CH53_1045 bacterial extracellular solute-binding s, 5 Middle family protein K11925 sgrR; SgrR family transcriptional regulator D CH53_1110 nadR; trifunctional NAD biosynthesis/regulator protein NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D CH53_2164 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D CH53_4156 helix-turn-helix family protein K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor D CH53_3988 AAA domain family protein K12266 norR; anaerobic nitric oxide reductase transcription regulator D CH53_3274 AAA domain family protein K15836 fhlA; formate hydrogenlyase transcriptional activator D CH53_1376 cdaR; carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator D CH53_3176 molybdenum-pterin binding domain protein K02019 modE; molybdate transport system regulatory protein D CH53_1717 sensory box protein K21829 dauR; D-arginine utilization repressor D CH53_3084 helix-turn-helix family protein K07726 K07726; putative transcriptional regulator D CH53_1906 met Apo-repressor, MetJ family protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D CH53_3598 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D CH53_490 CAT RNA binding domain protein K03488 licT; beta-glucoside operon transcriptional antiterminator D CH53_2859 bolA; protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D CH53_2067 rfaH; transcription elongation factor/antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH D CH53_1303 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D CH53_3095 marR family protein K02565 nagC; N-acetylglucosamine repressor D CH53_3967 ROK family protein K15545 mlc; transcriptional regulator of PTS gene D CH53_1691 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor D CH53_4053 tyrR; transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D CH53_577 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D CH53_4062 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D CH53_4059 pspC; phage shock protein C K03973 pspC; phage shock protein C D CH53_1159 lsrR; transcriptional regulator lsrR K11531 lsrR; lsr operon transcriptional repressor D CH53_1140 PAS fold family protein K05880 dhaR; transcriptional activator for dhaKLM operon D CH53_2218 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D CH53_1218 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D CH53_3471 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D CH53_2592 hypothetical protein K07735 algH; putative transcriptional regulator D CH53_971 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D CH53_2837 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D CH53_2802 crl; sigma factor-binding protein crl K11926 crl; sigma factor-binding protein Crl D CH53_1027 mraZ family protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:yin03021] D CH53_1463 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CH53_2095 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CH53_2096 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CH53_1827 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CH53_2324 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D CH53_924 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D CH53_687 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CH53_2031 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor D CH53_2245 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CH53_3591 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D CH53_1052 rapA; RNA polymerase-associated protein rapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D CH53_1280 nusA; transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA D CH53_2840 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D CH53_2090 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D CH53_2265 putative stringent starvation protein A K03599 sspA; stringent starvation protein A D CH53_2266 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B D CH53_84 stage II sporulation E family protein K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D CH53_83 anti-anti-sigma factor family protein K04749 rsbV; anti-sigma B factor antagonist D CH53_81 histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D CH53_686 hypothetical protein K03597 rseA; sigma-E factor negative regulatory protein RseA D CH53_685 rseB; sigma-E factor regulatory protein rseB K03598 rseB; sigma-E factor negative regulatory protein RseB D CH53_684 positive regulator of sigma(E), RseC/MucC family protein K03803 rseC; sigma-E factor negative regulatory protein RseC D CH53_971 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D CH53_1290 greA; transcription elongation factor greA K03624 greA; transcription elongation factor GreA D CH53_1559 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB D CH53_1971 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CH53_2741 rof; protein rof K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:yin03019] D CH53_14 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D CH53_2204 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D CH53_680 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CH53_1331 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CH53_1348 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D CH53_1969 DEAD/DEAH box helicase family protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D CH53_3203 hypothetical protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CH53_1273 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CH53_2009 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CH53_949 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CH53_1275 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CH53_1971 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CH53_1887 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CH53_1077 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CH53_1364 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CH53_1338 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D CH53_592 ppk1; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D CH53_973 pcnB; poly(A) polymerase family protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D CH53_2684 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D CH53_820 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D CH53_2199 csrD; RNase E specificity factor CsrD K18765 csrD; RNase E specificity factor CsrD D CH53_1898 rraA; regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A D CH53_1241 rraB; regulator of ribonuclease activity B K09893 rraB; regulator of ribonuclease activity B D CH53_2242 hypothetical protein K06958 rapZ; RNase adapter protein RapZ D CH53_4037 hrpA; RNA helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] D CH53_968 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:yin03011] D CH53_154 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CH53_2720 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CH53_1482 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CH53_1464 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CH53_1471 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CH53_1325 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CH53_1494 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CH53_1474 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CH53_2264 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CH53_1489 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CH53_1465 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CH53_1495 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CH53_1466 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CH53_1475 ribosomal S14p/S29e family protein K02954 RP-S14; small subunit ribosomal protein S14 D CH53_1276 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CH53_808 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CH53_1479 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CH53_1324 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CH53_1484 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CH53_1073 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CH53_2326 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CH53_2092 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CH53_1485 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CH53_1488 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CH53_1487 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CH53_1476 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CH53_1473 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CH53_1323 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CH53_2093 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CH53_2091 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CH53_2094 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CH53_2263 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CH53_1478 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CH53_1469 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CH53_1481 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CH53_1462 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CH53_1472 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CH53_805 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CH53_4144 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CH53_1297 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CH53_1483 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CH53_1486 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CH53_1477 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CH53_1296 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CH53_1858 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CH53_1480 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CH53_1470 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CH53_1905 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CH53_2888 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CH53_10 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CH53_1859 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CH53_1732 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CH53_4145 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CH53_1467 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CH53_2887 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CH53_268 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D CH53_1797 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2117 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2079 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2757 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_1939 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_790 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_1443 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2119 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_1794 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_2753 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_2113 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_2076 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_793 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_1446 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_1935 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_1796 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_2116 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_2078 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_1938 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_791 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_1444 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_2756 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:yin03009] D CH53_680 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CH53_4378 lipopolysaccharide kinase family protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D CH53_1348 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D CH53_679 era; GTP-binding protein Era K03595 era; GTPase D CH53_1294 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] D CH53_971 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D CH53_1280 nusA; transcription elongation protein nusA K02600 nusA; transcription termination/antitermination protein NusA D CH53_2840 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D CH53_2090 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D CH53_266 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D CH53_1058 rsmA; ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D CH53_1456 rsmB; 16S rRNA (cytosine(967)-C(5))-methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CH53_1127 methyltransferase small domain protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D CH53_2027 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D CH53_2594 rsmE; ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D CH53_1777 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CH53_1026 rsmH; 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D CH53_2279 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D CH53_1610 SAM-dependent methyltransferase family protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D CH53_4361 rlmA; ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D CH53_1330 RNA 2'-O ribose methyltransferase substrate binding family protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D CH53_1288 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D CH53_3240 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D CH53_2310 methyltransferase small domain protein K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D CH53_3065 rlmH; rRNA large subunit m3Psi methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D CH53_105 rlmI; ribosomal RNA large subunit methyltransferase I K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D CH53_1612 ribosomal RNA small subunit methyltransferase D, RsmJ family protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D CH53_125 THUMP domain protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D CH53_2708 ftsJ-like methyltransferase family protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D CH53_632 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D CH53_953 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D CH53_200 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D CH53_1053 pseudouridine synthase, RluA family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CH53_3007 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CH53_3903 pseudouridine synthase family protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D CH53_13 pseudouridine synthase, RluA family protein K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D CH53_796 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CH53_4400 pseudouridine synthase family protein K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D CH53_4296 pseudouridine synthase family protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D CH53_2763 RNA 2'-O ribose methyltransferase substrate binding family protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D CH53_1125 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D CH53_3784 rimJ; ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D CH53_807 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D CH53_159 ycaO-type kinase domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D CH53_2190 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D CH53_435 prmB; (glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D CH53_4408 cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D CH53_3045 cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D CH53_14 ribonuclease, Rne/Rng family domain protein K08300 rne; ribonuclease E [EC:3.1.26.12] D CH53_2204 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D CH53_2591 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D CH53_4346 dbpA; ATP-independent RNA helicase dbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D CH53_1273 DEAD/DEAH box helicase family protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CH53_690 DEAD/DEAH box helicase family protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D CH53_1349 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CH53_625 engA; ribosome-associated GTPase EngA K03977 engA; GTPase D CH53_1337 hflX; GTP-binding protein HflX K03665 hflX; GTPase D CH53_1450 telomere recombination family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CH53_1826 spoT; bifunctional (p)ppGpp synthase/hydrolase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CH53_1278 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D CH53_1281 rimP; ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP D CH53_2935 hypothetical protein K14761 rlbA; ribosome-associated protein D CH53_3066 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein D CH53_3080 putative rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor D CH53_1289 yhbY; RNA-binding protein YhbY K07574 yhbY; RNA-binding protein D CH53_1688 hypothetical protein K14762 yibL; ribosome-associated protein D CH53_2215 hypothetical protein K09889 yjgA; ribosome-associated protein D CH53_2244 raiA; ribosome-associated inhibitor A K05808 hpf; ribosome hibernation promoting factor D CH53_798 raiA; ribosome-associated inhibitor A K05809 raiA; ribosome-associated inhibitor A D CH53_3756 engD; GTP-dependent nucleic acid-binding protein engD K06942 ychF; ribosome-binding ATPase D CH53_11 hypothetical protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:yin03016] D CH53_2332 poly A polymerase head domain protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D CH53_515 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CH53_2746 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CH53_1071 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CH53_3070 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CH53_3300 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CH53_3099 glnS; glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D CH53_3788 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CH53_2639 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CH53_3796 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CH53_821 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CH53_131 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CH53_4147 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CH53_164 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CH53_2934 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CH53_1239 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CH53_628 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CH53_4143 pheS; phenylalanine--tRNA ligase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CH53_4142 pheT; phenylalanine--tRNA ligase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CH53_4079 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CH53_1537 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CH53_1813 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D CH53_4423 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CH53_2578 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D CH53_2747 tsaA; tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D CH53_412 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CH53_1277 truB; tRNA pseudouridine(55) synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D CH53_928 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D CH53_646 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CH53_1450 telomere recombination family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CH53_1339 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CH53_1736 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D CH53_1778 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CH53_3854 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D CH53_1317 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D CH53_1733 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D CH53_4094 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D CH53_1852 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D CH53_3927 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D CH53_3820 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D CH53_969 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D CH53_1099 ccmA; heme ABC exporter, ATP-binding protein CcmA K06020 ettA; energy-dependent translational throttle protein EttA D CH53_1696 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D CH53_1695 glyS; glycine--tRNA ligase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D CH53_972 gluQ; glutamyl-queuosine tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D CH53_2919 ybaK; cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D CH53_670 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D CH53_2154 dusA; tRNA dihydrouridine synthase A family protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D CH53_2189 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D CH53_3204 dihydrouridine synthase family protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D CH53_3082 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D CH53_3792 cmoA; tRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D CH53_3791 cmoB; tRNA (mo5U34)-methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D CH53_141 smtA; protein smtA K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D CH53_1932 trmA; tRNA (uracil(54)-C(5))-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D CH53_806 trmD; tRNA (guanine(37)-N(1))-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D CH53_2763 RNA 2'-O ribose methyltransferase substrate binding family protein K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D CH53_1825 trmH; tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D CH53_648 RNA methyltransferase, TrmH, group 1 family protein K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D CH53_1878 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D CH53_689 met-10+ like-family protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D CH53_2714 RNA pseudouridylate synthase family protein K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D CH53_1053 pseudouridine synthase, RluA family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CH53_3007 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D CH53_4402 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CH53_4047 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D CH53_2021 tusA; sulfurtransferase tusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D CH53_1496 dsrH; sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B D CH53_1497 tusC; sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C D CH53_1498 tusD; sulfurtransferase tusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D CH53_103 tusE; sulfur relay, TusE/DsrC/DsvC family protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D CH53_644 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein D CH53_2627 aminomethyltransferase folate-binding domain protein K06980 ygfZ; tRNA-modifying protein YgfZ D CH53_429 mnmC; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D CH53_2831 queA; tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D CH53_2868 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CH53_946 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CH53_947 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CH53_2711 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D CH53_1344 queG; epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D CH53_2832 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D CH53_2846 thiI; tRNA sulfurtransferase ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D CH53_2739 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D CH53_571 tmcA; tRNA(Met) cytidine acetyltransferase TmcA K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D CH53_3817 yeaZ; tRNA threonylcarbamoyl adenosine modification protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D CH53_2328 tsaD; tRNA threonylcarbamoyl adenosine modification protein TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D CH53_1342 tRNA threonylcarbamoyl adenosine modification protein YjeE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D CH53_2702 thiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D CH53_1331 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CH53_1275 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:yin03012] D CH53_3919 hypothetical protein K03113 EIF1; translation initiation factor 1 D CH53_1279 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CH53_4146 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CH53_1506 miro-like family protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D CH53_2721 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D CH53_2088 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CH53_1492 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CH53_1493 fusA; translation elongation factor G K02355 fusA; elongation factor G D CH53_873 fusA; translation elongation factor G K02355 fusA; elongation factor G D CH53_1675 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D CH53_3764 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D CH53_2723 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D CH53_3765 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D CH53_3758 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D CH53_174 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D CH53_250 yeiP; elongation factor P-like protein K02356 efp; elongation factor P D CH53_1361 efp; translation elongation factor P K02356 efp; elongation factor P D CH53_1352 EF-P lysine aminoacylase GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D CH53_1362 epmB; EF-P beta-lysylation protein EpmB K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-] D CH53_431 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-] D CH53_2638 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D CH53_1124 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D CH53_1459 hypothetical protein K09890 arfA; alternative ribosome-rescue factor D CH53_2744 RF-1 domain protein K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:yin03110] D CH53_175 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D CH53_794 clpB; ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D CH53_2862 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D CH53_1900 hslU; ATP-dependent protease HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D CH53_2903 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG D CH53_1077 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CH53_642 hscA; Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA D CH53_598 hsp70 family protein K04046 yegD; hypothetical chaperone protein D CH53_1364 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CH53_1076 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D CH53_2649 putative chaperone DnaJ K05516 cbpA; curved DNA-binding protein D CH53_1054 djlA; dnaJ-like protein djlA K05801 djlA; DnaJ like chaperone protein D CH53_643 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D CH53_1554 hslO; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33 D CH53_695 grpE family protein K03687 GRPE; molecular chaperone GrpE D CH53_1709 ibpA; small heat shock protein ibpA K04080 ibpA; molecular chaperone IbpA D CH53_1708 hsp20/alpha crystallin family protein K04081 ibpB; molecular chaperone IbpB D CH53_1553 S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D CH53_1365 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D CH53_955 peptidase Do family protein K04771 degP; serine protease Do [EC:3.4.21.107] D CH53_1287 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CH53_1775 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CH53_3514 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_93 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_1962 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2449 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2452 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_1875 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D CH53_1882 cpxP; periplasmic protein CpxP K06006 cpxP; periplasmic protein CpxP/Spy D CH53_3465 zraP; zinc resistance-associated protein K07803 zraP; zinc resistance-associated protein D CH53_4381 hdeA/HdeB family protein K19778 hdeB; acid stress chaperone HdeB D CH53_722 hdeB; hdeB domain protein K19778 hdeB; acid stress chaperone HdeB D CH53_3288 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D CH53_2411 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D CH53_2412 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D CH53_836 nitrate reductase delta subunit K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D CH53_494 nitrate reductase delta subunit K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D CH53_3102 chb; chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52] D CH53_1526 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CH53_2933 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D CH53_2865 PPIC-type PPIASE domain protein K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D CH53_1500 domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D CH53_1320 fklB; FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D CH53_1069 fkpB; FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D CH53_1502 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase slyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D CH53_1965 ppiC; peptidyl-prolyl cis-trans isomerase C K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D CH53_1056 PPIC-type PPIASE domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D CH53_1970 trxA; thioredoxin K03671 TXN; thioredoxin D CH53_2762 trxA; thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D CH53_2925 putative thioredoxin protein K05838 ybbN; putative thioredoxin D CH53_208 grxA; glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1 D CH53_1874 grxC; glutaredoxin 3 K03676 grxC; glutaredoxin 3 D CH53_4095 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D CH53_893 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D CH53_1802 DSBA-like thioredoxin domain protein K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D CH53_3834 disulfide bond formation DsbB family protein K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D CH53_2636 DSBA-like thioredoxin domain protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D CH53_1370 dsbD; disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D CH53_445 dsbE; disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:yin04131] D CH53_633 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D CH53_3983 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D CH53_3847 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CH53_3168 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CH53_4108 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CH53_3809 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CH53_2903 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:yin04121] C 03051 Proteasome [BR:yin03051] D CH53_2903 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:yin03032] D CH53_764 RNase H family protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CH53_2108 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D CH53_2864 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D CH53_4141 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D CH53_153 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D CH53_1731 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CH53_4196 hypothetical protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CH53_2157 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CH53_2325 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CH53_2162 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CH53_4213 putative single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D CH53_2735 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CH53_1730 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CH53_1238 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CH53_3068 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CH53_4426 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CH53_763 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CH53_2900 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CH53_1126 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D CH53_4338 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_3642 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_2734 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CH53_1803 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CH53_521 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CH53_1829 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CH53_3962 tus; DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein D CH53_1540 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] D CH53_3118 seqA; protein seqA K03645 seqA; negative modulator of initiation of replication D CH53_582 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein D CH53_339 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CH53_1728 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CH53_2361 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CH53_2348 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CH53_3908 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D CH53_3855 topB; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:yin03036] D CH53_680 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CH53_3869 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS D CH53_2108 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D CH53_2864 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D CH53_4141 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D CH53_153 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D CH53_2649 putative chaperone DnaJ K05516 cbpA; curved DNA-binding protein D CH53_2650 cbpM; chaperone modulatory protein CbpM K18997 cbpM; chaperone modulatory protein CbpM D CH53_1091 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D CH53_1731 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CH53_2275 SIS domain protein K12961 diaA; DnaA initiator-associating protein D CH53_106 hemimethylated DNA binding domain protein K11940 hspQ; heat shock protein HspQ D CH53_3245 dps; DNA protection during starvation protein K04047 dps; starvation-inducible DNA-binding protein D CH53_2188 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CH53_1338 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D CH53_2611 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D CH53_3520 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CH53_168 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CH53_2644 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CH53_3992 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CH53_269 37-kD nucleoid-associated bacterial family protein K06899 ndpA; nucleoid-associated protein D CH53_138 hypothetical protein K03632 mukB; chromosome partition protein MukB D CH53_139 mukE; chromosome partition protein mukE K03804 mukE; chromosome partition protein MukE D CH53_140 mukF; chromosome partition protein mukF K03633 mukF; chromosome partition protein MukF D CH53_1014 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CH53_931 ftsB; cell division protein ftsB K05589 ftsB; cell division protein FtsB D CH53_2029 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CH53_1024 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CH53_4362 ftsI; peptidoglycan synthase ftsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D CH53_167 ftsK/SpoIIIE family protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D CH53_1025 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL D CH53_1902 ftsN; cell division protein FtsN K03591 ftsN; cell division protein FtsN D CH53_1015 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D CH53_1019 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D CH53_2030 ftsX; putative protein insertion permease FtsX K09811 ftsX; cell division transport system permease protein D CH53_1013 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CH53_522 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA D CH53_2615 zapA; cell division protein ZapA K09888 zapA; cell division protein ZapA D CH53_1897 zapB; cell division protein ZapB K09892 zapB; cell division protein ZapB D CH53_127 hypothetical protein K18657 zapC; cell division protein ZapC D CH53_1006 hypothetical protein K18778 zapD; cell division protein ZapD D CH53_2262 AFG1-like ATPase family protein K06916 zapE; cell division protein ZapE D CH53_1321 hypothetical protein K07269 ytfB; cell division protein YtfB D CH53_2697 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CH53_1341 N-acetylmuramoyl-L-alanine amidase family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CH53_2890 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D CH53_3823 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D CH53_3822 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D CH53_3821 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D CH53_114 sulA; cell division inhibitor sulA K13053 sulA; cell division inhibitor SulA D CH53_1854 slmA; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator D CH53_3118 seqA; protein seqA K03645 seqA; negative modulator of initiation of replication D CH53_2200 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins D CH53_2201 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D CH53_2202 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D CH53_3063 mrdB; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D CH53_2361 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CH53_2348 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CH53_1778 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CH53_1777 rsmG; 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CH53_1998 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC D CH53_2634 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D CH53_3301 4Fe-4S iron sulfur cluster binding s, NifH/frxC family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D CH53_2320 fic/DOC family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D CH53_1804 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:yin03400] D CH53_4022 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CH53_3128 FAD binding domain of DNA photolyase family protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D CH53_694 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D CH53_2577 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D CH53_3929 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CH53_1008 mutator mutT family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CH53_1855 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CH53_1879 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CH53_2389 2OG-Fe(II) oxygenase superfamily protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D CH53_3584 hhH-GPD superbase excision DNA repair family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D CH53_1697 tag; DNA-3-methyladenine glycosylase I family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D CH53_1860 mutM; DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D CH53_3858 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CH53_231 apurinic endonuclease family protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D CH53_2106 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D CH53_2637 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CH53_521 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CH53_1829 NAD-dependent DNA ligase adenylation domain protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CH53_1803 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CH53_2161 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D CH53_3190 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D CH53_3621 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D CH53_2000 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CH53_2095 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CH53_2096 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CH53_1463 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CH53_1827 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CH53_4415 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CH53_923 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CH53_1340 mutL; DNA mismatch repair MutL family protein K03572 mutL; DNA mismatch repair protein MutL D CH53_2683 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH D CH53_3340 hypothetical protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D CH53_622 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CH53_2845 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CH53_4341 exoX; exodeoxyribonuclease 10 K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] D CH53_2735 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CH53_1730 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CH53_1238 DNA polymerase III chi subunit, HolC family protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D CH53_3068 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CH53_4426 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CH53_763 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CH53_2900 dnaX; DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CH53_1126 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D CH53_4338 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_3642 holE; DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D CH53_2162 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CH53_4213 putative single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D CH53_1540 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] D CH53_2694 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D CH53_2692 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D CH53_2695 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D CH53_823 recA; protein RecA K03553 recA; recombination protein RecA D CH53_3801 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CH53_3802 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CH53_3800 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D CH53_4188 endodeoxyribonuclease RusA family protein K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] D CH53_1904 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D CH53_2895 primosomal replication priB and priC family protein K04067 priC; primosomal replication protein N'' D CH53_2819 exonuclease SbcC family protein K03546 sbcC; DNA repair protein SbcC/Rad50 D CH53_2820 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D CH53_1111 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D CH53_1729 recF; DNA replication and repair RecF family protein K03629 recF; DNA replication and repair protein RecF D CH53_1824 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CH53_678 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D CH53_2902 recR; recombination protein RecR K06187 recR; recombination protein RecR D CH53_697 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CH53_2817 exonuclease, RdgC family protein K03554 rdgC; recombination associated protein RdgC D CH53_267 DEAD/DEAH box helicase family protein K19789 radD; DNA repair protein RadD D CH53_1525 ftsK/SpoIIIE family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D CH53_339 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CH53_1728 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CH53_3908 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D CH53_2108 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D CH53_2864 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D CH53_2188 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D CH53_4141 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha D CH53_153 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta D CH53_2009 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CH53_3869 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS D CH53_2798 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CH53_4391 impB/mucB/samB family protein K03502 umuC; DNA polymerase V D CH53_4390 umuD; protein umuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D CH53_2151 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CH53_1051 DNA polymerase family B, exonuclease domain protein K02336 polB; DNA polymerase II [EC:2.7.7.7] D CH53_17 dinI; DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D CH53_822 recX; regulatory protein recX K03565 recX; regulatory protein D CH53_1966 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CH53_110 hypothetical protein K03658 helD; DNA helicase IV [EC:5.6.2.4] D CH53_3237 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CH53_3816 DEAD_2 family protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CH53_753 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CH53_341 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CH53_754 ribonucleotide reductase, small chain family protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CH53_342 nrdB; ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:yin03029] D CH53_1279 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CH53_4146 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CH53_2721 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D CH53_2088 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CH53_1492 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CH53_1493 fusA; translation elongation factor G K02355 fusA; elongation factor G D CH53_873 fusA; translation elongation factor G K02355 fusA; elongation factor G D CH53_679 era; GTP-binding protein Era K03595 era; GTPase D CH53_4079 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CH53_3070 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CH53_3796 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CH53_3788 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CH53_2162 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CH53_4213 putative single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D CH53_2728 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D CH53_1077 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CH53_695 grpE family protein K03687 GRPE; molecular chaperone GrpE D CH53_1364 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CH53_1365 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES D CH53_1076 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D CH53_646 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CH53_643 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB D CH53_4095 grxD; monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D CH53_3301 4Fe-4S iron sulfur cluster binding s, NifH/frxC family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D CH53_2851 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D CH53_1735 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CH53_2903 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:yin02000] D CH53_151 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D CH53_2873 ABC transporter family protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D CH53_2874 mdlB; multidrug resistance-like ATP-binding protein MdlB K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D CH53_3939 type I secretion system ATPase family protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB D CH53_3941 type I secretion system ATPase family protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D CH53_3047 ABC transporter family protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D CH53_4377 ABC transporter family protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D CH53_1921 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D CH53_3004 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D CH53_172 cydC; thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D CH53_171 cydD; thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D CH53_531 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D CH53_178 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D CH53_889 ABC transporter family protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D CH53_124 ccmA; heme ABC exporter, ATP-binding protein CcmA K15738 uup; ABC transport system ATP-binding/permease protein D CH53_544 sulfate ABC transporter, sulfate-binding family protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D CH53_1888 sulfate ABC transporter, sulfate-binding family protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D CH53_543 cysT; sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D CH53_542 cysW; sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D CH53_541 cysA; sulfate ABC transporter, ATP-binding family protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D CH53_3178 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D CH53_3179 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D CH53_3180 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D CH53_3175 ABC transporter family protein K05776 modF; molybdate transport system ATP-binding protein D CH53_1512 tauA; taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein D CH53_1510 binding--dependent transport system inner membrane component family protein K15552 tauC; taurine transport system permease protein D CH53_1511 ABC transporter family protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D CH53_483 yfuA; yfuA K02012 afuA; iron(III) transport system substrate-binding protein D CH53_3440 bacterial extracellular solute-binding family protein K02012 afuA; iron(III) transport system substrate-binding protein D CH53_484 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D CH53_3439 binding--dependent transport system inner membrane component family protein K02011 afuB; iron(III) transport system permease protein D CH53_485 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CH53_3438 ABC transporter family protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CH53_1046 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein D CH53_1047 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein D CH53_1048 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D CH53_205 potF; putrescine-binding periplasmic protein K11073 potF; putrescine transport system substrate-binding protein D CH53_202 binding--dependent transport system inner membrane component family protein K11074 potI; putrescine transport system permease protein D CH53_203 potH; putrescine transport system permease protein PotH K11075 potH; putrescine transport system permease protein D CH53_204 polyamine ABC transporter, ATP-binding family protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D CH53_757 substrate binding domain of ABC-type glycine betaine transport system family protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D CH53_756 binding--dependent transport system inner membrane component family protein K02001 proW; glycine betaine/proline transport system permease protein D CH53_755 proV; glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D CH53_3226 substrate binding domain of ABC-type glycine betaine transport system family protein K05845 opuC; osmoprotectant transport system substrate-binding protein D CH53_3227 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D CH53_3229 binding--dependent transport system inner membrane component family protein K05846 opuBD; osmoprotectant transport system permease protein D CH53_3228 ABC transporter family protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D CH53_2143 malE; maltose-binding periplasmic protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein D CH53_2142 binding--dependent transport system inner membrane component family protein K10109 malF; maltose/maltodextrin transport system permease protein D CH53_2141 binding--dependent transport system inner membrane component family protein K10110 malG; maltose/maltodextrin transport system permease protein D CH53_2144 malK; maltose/maltodextrin import ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D CH53_2354 bacterial extracellular solute-binding family protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D CH53_3945 periplasmic binding domain protein K10537 araF; L-arabinose transport system substrate-binding protein D CH53_3947 branched-chain amino acid transport system / permease component family protein K10538 araH; L-arabinose transport system permease protein D CH53_3946 ABC transporter family protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D CH53_4266 bacterial extracellular solute-binding family protein K10192 togB; oligogalacturonide transport system substrate-binding protein D CH53_4263 binding--dependent transport system inner membrane component family protein K10193 togM; oligogalacturonide transport system permease protein D CH53_4264 binding--dependent transport system inner membrane component family protein K10194 togN; oligogalacturonide transport system permease protein D CH53_4265 ABC transporter family protein K10195 togA; oligogalacturonide transport system ATP-binding protein D CH53_3270 mglB; D-galactose-binding periplasmic protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D CH53_3272 branched-chain amino acid transport system / permease component family protein K10541 mglC; methyl-galactoside transport system permease protein D CH53_3271 ABC transporter family protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D CH53_1664 xylF; D-xylose ABC transporter, D-xylose-binding protein K10543 xylF; D-xylose transport system substrate-binding protein D CH53_1662 branched-chain amino acid transport system / permease component family protein K10544 xylH; D-xylose transport system permease protein D CH53_1663 ccmA; heme ABC exporter, ATP-binding protein CcmA K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D CH53_3040 alsB; D-allose-binding periplasmic protein K10549 alsB; D-allose transport system substrate-binding protein D CH53_3038 branched-chain amino acid transport system / permease component family protein K10550 alsC; D-allose transport system permease protein D CH53_3039 alsA; D-allose import ATP-binding protein AlsA K10551 alsA; D-allose transport system ATP-binding protein [EC:7.5.2.8] D CH53_4236 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein D CH53_1789 periplasmic binding domain protein K10439 rbsB; ribose transport system substrate-binding protein D CH53_4235 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D CH53_1788 branched-chain amino acid transport system / permease component family protein K10440 rbsC; ribose transport system permease protein D CH53_4234 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D CH53_1787 ccmA; heme ABC exporter, ATP-binding protein CcmA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D CH53_1943 ytfQ; ABC transporter periplasmic-binding protein ytfQ K23508 ytfQ; galactofuranose transport system substrate-binding protein D CH53_1947 branched-chain amino acid transport system / permease component family protein K23509 ytfT; galactofuranose transport system permease protein D CH53_1945 branched-chain amino acid transport system / permease component family protein K23509 ytfT; galactofuranose transport system permease protein D CH53_1944 ccmA; heme ABC exporter, ATP-binding protein CcmA K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D CH53_834 periplasmic binding domain protein K17202 eryG; erythritol transport system substrate-binding protein D CH53_831 branched-chain amino acid transport system / permease component family protein K17203 eryF; erythritol transport system permease protein D CH53_832 ccmA; heme ABC exporter, ATP-binding protein CcmA K17204 eryE; erythritol transport system ATP-binding protein D CH53_3744 periplasmic binding domain protein K17213 K17213; inositol transport system substrate-binding protein D CH53_3746 branched-chain amino acid transport system / permease component family protein K17214 K17214; inositol transport system permease protein D CH53_3745 ccmA; heme ABC exporter, ATP-binding protein CcmA K17215 K17215; inositol transport system ATP-binding protein D CH53_2044 bacterial extracellular solute-binding family protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D CH53_2045 binding--dependent transport system inner membrane component family protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D CH53_2046 binding--dependent transport system inner membrane component family protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D CH53_2047 ugpC; sn-glycerol-3-phosphate import ATP-binding protein UgpC K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D CH53_1163 lsrB; autoinducer 2-binding protein lsrB K10555 lsrB; AI-2 transport system substrate-binding protein D CH53_1161 branched-chain amino acid transport system / permease component family protein K10556 lsrC; AI-2 transport system permease protein D CH53_1162 branched-chain amino acid transport system / permease component family protein K10557 lsrD; AI-2 transport system permease protein D CH53_1160 ccmA; heme ABC exporter, ATP-binding protein CcmA K10558 lsrA; AI-2 transport system ATP-binding protein D CH53_475 mce related family protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CH53_2254 mlaD; outer membrane lipid asymmetry maintenance protein MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D CH53_477 ABC transport permease subunit K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CH53_2253 putative phospholipid ABC transporter permease protein mlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D CH53_476 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CH53_2252 ABC transporter family protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D CH53_474 hypothetical protein K18480 linN; cholesterol transport system auxiliary component D CH53_2255 putative phospholipid-binding protein mlaC K07323 mlaC; phospholipid transport system substrate-binding protein D CH53_2256 STAS domain protein K07122 mlaB; phospholipid transport system transporter-binding protein D CH53_850 periplasmic binding domain protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D CH53_3298 periplasmic binding domain protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D CH53_2177 periplasmic binding domain protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D CH53_3346 periplasmic binding domain protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D CH53_3335 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D CH53_3343 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D CH53_3344 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D CH53_852 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D CH53_853 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D CH53_2179 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D CH53_2180 branched-chain amino acid transport system / permease component family protein K02057 ABC.SS.P; simple sugar transport system permease protein D CH53_3345 ccmA; heme ABC exporter, ATP-binding protein CcmA K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D CH53_2178 ccmA; heme ABC exporter, ATP-binding protein CcmA K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D CH53_3336 ABC transporter family protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D CH53_851 ccmA; heme ABC exporter, ATP-binding protein CcmA K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D CH53_2823 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D CH53_1756 pstS; phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein D CH53_591 binding--dependent transport system inner membrane component family protein K02037 pstC; phosphate transport system permease protein D CH53_1755 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D CH53_590 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CH53_1754 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CH53_589 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CH53_1753 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CH53_3214 phnD; phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein D CH53_3215 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D CH53_3216 phnE; phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D CH53_3213 phnC; phosphonate ABC transporter, ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D CH53_3993 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10015 hisM; histidine transport system permease protein D CH53_402 hisM; histidine transport system permease protein hisM K10015 hisM; histidine transport system permease protein D CH53_403 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D CH53_3994 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10016 hisQ; histidine transport system permease protein D CH53_401 ABC transporter family protein K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D CH53_404 hisJ; histidine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein D CH53_3995 bacterial extracellular solute-binding s, 3 family protein K10014 hisJ; histidine transport system substrate-binding protein D CH53_3243 bacterial extracellular solute-binding s, 3 family protein K10036 glnH; glutamine transport system substrate-binding protein D CH53_3242 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10037 glnP; glutamine transport system permease protein D CH53_3241 ABC transporter family protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D CH53_199 artJ; ABC transporter arginine-binding protein 1 K09996 artJ; arginine transport system substrate-binding protein D CH53_192 lysine-arginine-ornithine-binding periplasmic family protein K09997 artI; arginine transport system substrate-binding protein D CH53_194 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09998 artM; arginine transport system permease protein D CH53_193 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09999 artQ; arginine transport system permease protein D CH53_191 artP; arginine transport ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D CH53_3076 gltI; glutamate/aspartate periplasmic-binding protein K10001 gltI; glutamate/aspartate transport system substrate-binding protein D CH53_3074 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10002 gltK; glutamate/aspartate transport system permease protein D CH53_3075 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K10003 gltJ; glutamate/aspartate transport system permease protein D CH53_3073 ABC transporter family protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D CH53_2174 bacterial extracellular solute-binding s, 3 family protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D CH53_2173 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09970 aapQ; general L-amino acid transport system permease protein D CH53_2172 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K09971 aapM; general L-amino acid transport system permease protein D CH53_2171 hypothetical protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D CH53_3594 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D CH53_3595 yecS; inner membrane amino-acid ABC transporter permease protein yecS K10009 tcyB; L-cystine transport system permease protein D CH53_3596 ABC transporter family protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D CH53_2033 receptor ligand binding region family protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D CH53_863 periplasmic binding domain protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D CH53_2034 livH; high-affinity branched-chain amino acid transport system permease protein livH K01997 livH; branched-chain amino acid transport system permease protein D CH53_2035 branched-chain amino acid transport system / permease component family protein K01998 livM; branched-chain amino acid transport system permease protein D CH53_2036 ABC transporter family protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D CH53_2037 livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF K01996 livF; branched-chain amino acid transport system ATP-binding protein D CH53_2749 metQ; D-methionine-binding lipoprotein metQ K02073 metQ; D-methionine transport system substrate-binding protein D CH53_221 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein D CH53_1738 NLPA lipofamily protein K02073 metQ; D-methionine transport system substrate-binding protein D CH53_1740 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D CH53_219 binding--dependent transport system inner membrane component family protein K02072 metI; D-methionine transport system permease protein D CH53_2750 metI; D-methionine transport system permease protein metI K02072 metI; D-methionine transport system permease protein D CH53_1739 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D CH53_220 ABC transporter family protein K02071 metN; D-methionine transport system ATP-binding protein D CH53_2751 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D CH53_3218 periplasmic binding domain protein K11959 urtA; urea transport system substrate-binding protein D CH53_857 urea ABC transporter, substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D CH53_3219 urtB; urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein D CH53_858 branched-chain amino acid transport system / permease component family protein K11960 urtB; urea transport system permease protein D CH53_3220 urtC; urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein D CH53_859 branched-chain amino acid transport system / permease component family protein K11961 urtC; urea transport system permease protein D CH53_3221 urtD; urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D CH53_860 ABC transporter family protein K11962 urtD; urea transport system ATP-binding protein D CH53_3222 urtE; urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein D CH53_3188 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein D CH53_861 ABC transporter family protein K11963 urtE; urea transport system ATP-binding protein D CH53_932 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D CH53_1750 bacterial extracellular solute-binding s, 3 family protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D CH53_933 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D CH53_1747 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D CH53_1749 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein K02029 ABC.PA.P; polar amino acid transport system permease protein D CH53_934 ABC transporter family protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D CH53_3874 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_3875 oppA3; periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_4049 mppA; periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CH53_3876 oppB; oligopeptide transport system permease protein oppB K15581 oppB; oligopeptide transport system permease protein D CH53_3877 oppC; oligopeptide transport system permease protein oppC K15582 oppC; oligopeptide transport system permease protein D CH53_3878 hypothetical protein K15583 oppD; oligopeptide transport system ATP-binding protein D CH53_3879 hypothetical protein K10823 oppF; oligopeptide transport system ATP-binding protein D CH53_1645 bacterial extracellular solute-binding s, 5 Middle family protein K12368 dppA; dipeptide transport system substrate-binding protein D CH53_1644 binding--dependent transport system inner membrane component family protein K12369 dppB; dipeptide transport system permease protein D CH53_1643 binding--dependent transport system inner membrane component family protein K12370 dppC; dipeptide transport system permease protein D CH53_1642 hypothetical protein K12371 dppD; dipeptide transport system ATP-binding protein D CH53_1641 hypothetical protein K12372 dppF; dipeptide transport system ATP-binding protein D CH53_4066 bacterial extracellular solute-binding s, 5 Middle family protein K19226 sapA; cationic peptide transport system substrate-binding protein D CH53_4067 sapB; peptide transport system permease protein sapB K19227 sapB; cationic peptide transport system permease protein D CH53_4068 sapC; peptide transport system permease protein sapC K19228 sapC; cationic peptide transport system permease protein D CH53_4069 hypothetical protein K19229 sapD; cationic peptide transport system ATP-binding protein D CH53_4070 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein D CH53_1244 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CH53_736 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CH53_882 bacterial extracellular solute-binding s, 5 Middle family protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CH53_1245 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CH53_735 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CH53_881 binding--dependent transport system inner membrane component family protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CH53_1246 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CH53_734 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CH53_880 binding--dependent transport system inner membrane component family protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CH53_733 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CH53_1247 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CH53_879 ABC transporter family protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CH53_732 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CH53_1248 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CH53_878 ABC transporter family protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D CH53_259 bacterial extracellular solute-binding s, 5 Middle family protein K13893 yejA; microcin C transport system substrate-binding protein D CH53_260 yejB; inner membrane ABC transporter permease protein yejB K13894 yejB; microcin C transport system permease protein D CH53_261 yejE; inner membrane ABC transporter permease protein yejE K13895 yejE; microcin C transport system permease protein D CH53_262 nikE; nickel import ATP-binding protein NikE K13896 yejF; microcin C transport system ATP-binding protein D CH53_965 periplasmic binding family protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D CH53_964 fhuB; iron(3+)-hydroxamate import system permease protein fhuB K23228 fhuB; ferric hydroxamate transport system permease protein D CH53_966 fhuC; iron(3+)-hydroxamate import ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D CH53_1398 hmuT; hemin-binding periplasmic protein hmuT K25132 hmuT; heme transport system substrate-binding protein D CH53_4125 hmuT; hemin-binding periplasmic protein hmuT K25132 hmuT; heme transport system substrate-binding protein D CH53_1399 fecCD transport family protein K25133 hmuU; heme transport system permease protein D CH53_1400 hmuV; hemin import ATP-binding protein HmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D CH53_2399 periplasmic binding family protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D CH53_2398 fecCD transport family protein K23186 fepD; iron-siderophore transport system permease protein D CH53_2397 fecCD transport family protein K23187 fepG; iron-siderophore transport system permease protein D CH53_2396 ABC transporter family protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D CH53_2429 periplasmic binding family protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D CH53_2431 fecCD transport family protein K25283 yclO; iron-siderophore transport system permease protein D CH53_2430 fecCD transport family protein K25284 yclN; iron-siderophore transport system permease protein D CH53_2432 ABC transporter family protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D CH53_958 periplasmic binding family protein K06858 btuF; vitamin B12 transport system substrate-binding protein D CH53_4138 fecCD transport family protein K06073 btuC; vitamin B12 transport system permease protein D CH53_4136 ABC transporter family protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D CH53_3806 periplasmic solute binding family protein K09815 znuA; zinc transport system substrate-binding protein D CH53_3804 ABC 3 transport family protein K09816 znuB; zinc transport system permease protein D CH53_3805 ABC transporter family protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CH53_4247 periplasmic solute binding family protein K11604 sitA; manganese/iron transport system substrate-binding protein D CH53_4249 ABC 3 transport family protein K11605 sitC; manganese/iron transport system permease protein D CH53_4250 ABC 3 transport family protein K11606 sitD; manganese/iron transport system permease protein D CH53_4248 ABC transporter family protein K11607 sitB; manganese/iron transport system ATP-binding protein D CH53_3385 cbiN; cobalt transport family protein K02009 cbiN; cobalt/nickel transport protein D CH53_3386 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D CH53_3384 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D CH53_3387 cobalt ABC transporter, ATP-binding family protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein D CH53_2886 periplasmic solute binding family protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D CH53_2885 ABC 3 transport family protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein D CH53_2884 ABC transporter family protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D CH53_532 kpsM; polysialic acid transport protein kpsM K09688 kpsM; capsular polysaccharide transport system permease protein D CH53_539 putative kpsE K10107 kpsE; capsular polysaccharide transport system permease protein D CH53_533 ABC transporter family protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12] D CH53_3309 ABC-2 type transporter family protein K09690 wzm; homopolymeric O-antigen transport system permease protein D CH53_3310 ABC transporter family protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D CH53_1236 lptF; LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D CH53_1235 lptG; LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D CH53_2246 lptB; LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D CH53_3198 ybhR; inner membrane transport permease ybhR K25180 ybhR; drug efflux transport system permease protein D CH53_3199 ABC-2 type transporter family protein K25181 ybhS; drug efflux transport system permease protein D CH53_3200 ccmA; heme ABC exporter, ATP-binding protein CcmA K25182 ybhF; drug efflux transport system ATP-binding protein D CH53_3201 efflux transporter, RND family, MFP subunit K25183 ybhG; membrane fusion protein YbhG D CH53_4412 lolE; liporeleasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein D CH53_4414 lolC; lipo-releasing system transmembrane protein lolC K09808 lolC_E; lipoprotein-releasing system permease protein D CH53_4413 lolD; liporeleasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D CH53_448 ccmD; heme exporter protein CcmD K02196 ccmD; heme exporter protein D D CH53_449 ccmC; heme exporter CcmC family protein K02195 ccmC; heme exporter protein C D CH53_450 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B D CH53_451 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D CH53_2030 ftsX; putative protein insertion permease FtsX K09811 ftsX; cell division transport system permease protein D CH53_2029 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CH53_980 yadH; inner membrane transport permease yadH K01992 ABC-2.P; ABC-2 type transport system permease protein D CH53_981 ABC transporter family protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CH53_2929 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D CH53_3707 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D CH53_3708 ftsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein D CH53_2928 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CH53_3709 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CH53_3259 ABC transporter family protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CH53_4114 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D CH53_3950 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D CH53_4104 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D CH53_3398 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CH53_3458 MFS transporter, sugar porter family protein K06609 iolT; MFS transporter, SP family, major inositol transporter D CH53_2529 H+ symporter family protein K02532 lacY; MFS transporter, OHS family, lactose permease D CH53_842 fucP; H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease D CH53_4014 fucP; H+ symporter permease K02429 fucP; MFS transporter, FHS family, L-fucose permease D CH53_1042 setA; sugar efflux transporter A K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter D CH53_3396 xapB; xanthosine permease K11537 xapB; MFS transporter, NHS family, xanthosine permease D CH53_3257 MFS transporter, metabolite:H+ symporter family protein K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease D CH53_2422 proP; proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter D CH53_1080 sugar (and other) transporter family protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D CH53_503 major Facilitator Superfamily protein K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D CH53_2298 major Facilitator Superfamily protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D CH53_2647 major Facilitator Superfamily protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D CH53_1712 dgoT; D-galactonate transporter K08194 dgoT; MFS transporter, ACS family, D-galactonate transporter D CH53_1374 putative galactarate transporter K12299 garP; MFS transporter, ACS family, probable galactarate transporter D CH53_652 lacY proton/sugar symporter family protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D CH53_2015 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D CH53_1648 phosphoglycerate transporter family protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D CH53_3441 major Facilitator Superfamily protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D CH53_3683 narK; nitrite transporter family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D CH53_2679 major Facilitator Superfamily protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D CH53_2857 AmpG-like permease family protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D CH53_3840 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D CH53_265 drug resistance transporter, Bcr/CflA subfamily protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D CH53_1893 major Facilitator Superfamily protein K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD D CH53_1674 mdfA; multidrug transporter MdfA K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D CH53_32 sugar (and other) transporter family protein K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D CH53_3778 major Facilitator Superfamily protein K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein D CH53_3725 sugar (and other) transporter family protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D CH53_769 sugar (and other) transporter family protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D CH53_2764 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D CH53_478 major Facilitator Superfamily protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D CH53_2968 drug resistance MFS transporter, drug:H+ antiporter-2 family protein K08166 mmr; MFS transporter, DHA2 family, methylenomycin A resistance protein D CH53_4273 major Facilitator Superfamily protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D CH53_2917 fsr; fosmidomycin resistance protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D CH53_3965 ynfM; inner membrane transport protein ynfM K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D CH53_3749 sugar (and other) transporter family protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein D CH53_163 sugar (and other) transporter family protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein D CH53_1531 major Facilitator Superfamily protein K06141 tsgA; MFS transporter, TsgA protein D CH53_526 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D CH53_2685 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D CH53_525 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D CH53_2241 ptsO; phosphocarrier protein NPr K08485 ptsO; phosphocarrier protein NPr D CH53_234 phosphocarrier, HPr family protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D CH53_527 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CH53_4424 ptsG; PTS system glucose-specific EIICB component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D CH53_3098 nagE; PTS system, N-acetylglucosamine-specific IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CH53_2499 PTS system, maltose and glucose-specific subfamily, IIC component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_3956 PTS system, glucose-like IIB component domain protein K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CH53_1137 PTS system, sucrose-specific IIBC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D CH53_489 PTS system, beta-glucoside-specific IIABC component family protein K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CH53_276 PTS system, glucose-like IIB component domain protein K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CH53_3952 PTS system, glucose-like IIB component domain protein K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CH53_465 PTS system, glucose-like IIB component domain protein K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-] D CH53_2233 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D CH53_1387 phosphotransferase system, EIIC family protein K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192] D CH53_2502 PTS system, alpha-glucoside-specific IIBC component domain protein K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-] D CH53_232 PTS system, Fru family, IIB component domain protein K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D CH53_3459 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197] D CH53_1693 mtlA; PTS system mannitol-specific EIICBA component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D CH53_713 chbA; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CH53_3702 chbA; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CH53_1726 PTS system, Lactose/Cellobiose specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CH53_716 chbB; N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CH53_1722 PTS system, Lactose/Cellobiose specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CH53_3699 PTS system, Lactose/Cellobiose specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CH53_715 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D CH53_1723 PTS system, lactose/cellobiose IIC component family protein K02761 celB; cellobiose PTS system EIIC component D CH53_3700 PTS system, lactose/cellobiose IIC component family protein K02761 celB; cellobiose PTS system EIIC component D CH53_609 PTS system glucitol/sorbitol-specific IIA component family protein K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D CH53_608 srlE; glucitol/sorbitol-specific phosphotransferase enzyme IIB component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198] D CH53_607 srlA; glucitol/sorbitol permease IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component D CH53_4353 manX; PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D CH53_4354 PTS system, mannose/fructose/sorbose, IIC component family protein K02795 manY; mannose PTS system EIIC component D CH53_4355 PTS system, mannose/fructose/sorbose, IID component family protein K02796 manZ; mannose PTS system EIID component D CH53_867 PTS system, mannose/fructose/sorbose family, IIA component domain protein K02812 sorF; sorbose PTS system EIIA component [EC:2.7.1.206] D CH53_868 sorB; sorbose-specific phosphotransferase enzyme IIB component K02813 sorB; sorbose PTS system EIIB component [EC:2.7.1.206] D CH53_869 PTS system, mannose/fructose/sorbose, IIC component family protein K02814 sorA; sorbose PTS system EIIC component D CH53_870 PTS system, mannose/fructose/sorbose, IID component family protein K02815 sorM; sorbose PTS system EIID component D CH53_2357 PTS system fructose IIA component family protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D CH53_243 PTS system fructose IIA component family protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D CH53_240 PTS system, mannose/fructose/sorbose, IIB component family protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D CH53_241 PTS system sorbose-specific iic component family protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D CH53_242 PTS system mannose/fructose/sorbose IID component family protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D CH53_2360 agaB; galactosamine-specific PTS system enzyme IIB component K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-] D CH53_2359 PTS system sorbose-specific iic component family protein K10985 agaC; galactosamine PTS system EIIC component D CH53_2358 PTS system, mannose/fructose/sorbose, IID component family protein K10986 agaD; galactosamine PTS system EIID component D CH53_394 ptsN1; phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CH53_395 PTS system, Lactose/Cellobiose specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CH53_396 PTS system sugar-specific permease component family protein K03475 ulaA; ascorbate PTS system EIIC component D CH53_2243 ptsN; PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D CH53_1148 dhaM; PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121] D CH53_3238 MIP channel s family protein K06188 aqpZ; aquaporin Z D CH53_1896 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D CH53_3370 MIP channel s family protein K27261 pduF; propanediol uptake facilitator D CH53_721 trkA-N domain protein K10716 kch; voltage-gated potassium channel D CH53_2876 amt; ammonium transporter family protein K03320 amt; ammonium transporter, Amt family D CH53_4077 gstB; glutathione S-transferase GST-6.0 K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CH53_2165 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CH53_4290 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CH53_225 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D CH53_2265 putative stringent starvation protein A K03599 sspA; stringent starvation protein A D CH53_3273 focA; formate transporter FocA K06212 focA; formate transporter D CH53_160 focA; formate transporter FocA K06212 focA; formate transporter D CH53_1535 putative nitrite transporter K02598 nirC; nitrite transporter D CH53_1458 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D CH53_1405 mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel D CH53_2894 mechanosensitive ion channel family protein K05802 mscK; potassium-dependent mechanosensitive channel D CH53_1351 mechanosensitive ion channel family protein K22051 mscM; miniconductance mechanosensitive channel D CH53_2608 mscS; small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel D CH53_4297 mechanosensitive ion channel family protein K16053 ybdG; miniconductance mechanosensitive channel D CH53_595 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D CH53_3205 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D CH53_724 yut; urea transporter K08717 utp; urea transporter D CH53_3534 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CH53_3535 motB; motility protein B K02557 motB; chemotaxis protein MotB D CH53_2403 ompA family protein K02557 motB; chemotaxis protein MotB D CH53_2372 exbB; tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB D CH53_2373 exbD; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD D CH53_3152 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ D CH53_3153 tolR; protein TolR K03560 tolR; biopolymer transport protein TolR D CH53_2005 corA; magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D CH53_4048 corA-like Mg2+ transporter family protein K16074 zntB; zinc transporter D CH53_719 crcB-like family protein K06199 crcB; fluoride exporter D CH53_720 crcB-like family protein K06199 crcB; fluoride exporter D CH53_3055 crcB; protein CrcB K06199 crcB; fluoride exporter D CH53_1314 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D CH53_811 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D CH53_132 gram-negative porin family protein K09476 ompF; outer membrane pore protein F D CH53_3236 gram-negative porin family protein K11929 phoE; outer membrane pore protein E D CH53_334 ompC; outer membrane protein C K09475 ompC; outer membrane pore protein C D CH53_2145 lamB; maltoporin K02024 lamB; maltoporin D CH53_1136 scrY; sucrose porin K16077 scrY; sucrose porin D CH53_1725 bglH; cryptic outer membrane porin BglH K10124 bglH; carbohydrate-specific outer membrane porin D CH53_115 ompA; outer membrane protein A K03286 TC.OOP; OmpA-OmpF porin, OOP family D CH53_3248 ompX; outer membrane protein X K11934 ompX; outer membrane protein X D CH53_441 outer membrane transport family protein K06076 fadL; long-chain fatty acid transport protein D CH53_2453 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_3512 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_94 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_319 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_2546 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_3432 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1628 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1961 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_2307 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin D CH53_991 TonB-dependent siderophore receptor family protein K19611 fepA; ferric enterobactin receptor D CH53_1933 btuB; TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter D CH53_1918 heme-binding A family protein K12545 hasA; heme acquisition protein HasA D CH53_1919 heme-binding A family protein K12545 hasA; heme acquisition protein HasA D CH53_1920 heme-binding A family protein K12545 hasA; heme acquisition protein HasA D CH53_226 tonB dependent receptor family protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D CH53_1396 shuA; outer membrane heme receptor ShuA K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D CH53_4123 shuA; outer membrane heme receptor ShuA K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D CH53_2433 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CH53_1404 TonB-dependent siderophore receptor family protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CH53_1529 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CH53_4358 fcuA; ferrichrome receptor fcuA K02014 TC.FEV.OM; iron complex outermembrane recepter protein D CH53_3006 type I secretion outer membrane, TolC family protein K12538 hasF; outer membrane protein, type I secretion system D CH53_2343 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D CH53_487 carbohydrate-selective porin, OprB family protein K07267 oprB; porin D CH53_2728 yaeT; outer membrane assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D CH53_626 yfgL; outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB D CH53_575 nlpB; lipoprotein 34 K07287 bamC; outer membrane protein assembly factor BamC D CH53_797 hypothetical protein K05807 bamD; outer membrane protein assembly factor BamD D CH53_698 smpA; small protein A K06186 bamE; outer membrane protein assembly factor BamE D CH53_1312 surface antigen variable number repeat family protein K07278 tamA; translocation and assembly module TamA D CH53_1311 hypothetical protein K09800 tamB; translocation and assembly module TamB D CH53_4267 kdgM; oligogalacturonate-specific porin kdgM K22110 kdgM; oligogalacturonate-specific porin family protein D CH53_1626 kdgM; oligogalacturonate-specific porin kdgM K22110 kdgM; oligogalacturonate-specific porin family protein D CH53_2247 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA D CH53_2248 lptC; LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC D CH53_1055 lptD; LPS-assembly protein lptD K04744 lptD; LPS-assembly protein D CH53_3069 lipopolysaccharide-assembly family protein K03643 lptE; LPS-assembly lipoprotein D CH53_1632 tetratricopeptide repeat family protein K20543 bcsC; cellulose synthase operon protein C D CH53_1430 espA-like secreted family protein K15344 sseB; secreted effector protein SseB D CH53_1428 secretion system effector C (SseC) like family protein K15345 sseC; secreted effector protein SseC D CH53_1427 putative methyl-accepting chemotaxis protein K15346 sseD; secreted effector protein SseD D CH53_4064 pertussis toxin, subunit 1 family protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-] D CH53_3079 corC; magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein D CH53_3295 lrgA family protein K06518 cidA; holin-like protein D CH53_2169 lrgA family protein K06518 cidA; holin-like protein D CH53_3369 pduA; propanediol utilization protein PduA K27260 pduA; bacterial microcompartment shell protein D CH53_2511 eutM; ethanolamine utilization protein EutM K04027 eutM; ethanolamine utilization protein EutM D CH53_2989 melB; melibiose carrier protein K11104 melB; melibiose permease D CH53_331 major Facilitator Superfamily protein K16210 togT; oligogalacturonide transporter D CH53_302 MFS/sugar transport family protein K16210 togT; oligogalacturonide transporter D CH53_227 amino acid permease family protein K11733 lysP; lysine-specific permease D CH53_4366 amino acid permease family protein K11734 aroP; aromatic amino acid transport protein AroP D CH53_997 amino acid permease family protein K11734 aroP; aromatic amino acid transport protein AroP D CH53_2825 amino acid permease family protein K11736 proY; proline-specific permease ProY D CH53_3607 cycA; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter D CH53_3688 amino acid permease family protein K11738 ansP; L-asparagine permease D CH53_1655 amino acid permease family protein K16234 hutT; histidine transporter D CH53_2477 amino acid permease family protein K16235 mmuP; S-methylmethionine transporter D CH53_481 amino acid permease family protein K14052 puuP; putrescine importer D CH53_1266 potE; putrescine-ornithine antiporter K03756 potE; putrescine:ornithine antiporter D CH53_4028 putative arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D CH53_4375 transporter, basic amino acid/polyamine antiporter family protein K03758 arcD; arginine:ornithine antiporter / lysine permease D CH53_1155 transporter, basic amino acid/polyamine antiporter family protein K03758 arcD; arginine:ornithine antiporter / lysine permease D CH53_2419 eat; ethanolamine permease K16238 eat; ethanolamine permease D CH53_47 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D CH53_2337 amino acid permease family protein K16263 yjeH; amino acid efflux transporter D CH53_3164 cation diffusion facilitator transporter family protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D CH53_1886 fieF; ferrous-iron efflux pump FieF K13283 fieF; ferrous-iron efflux pump FieF D CH53_2390 heavy metal efflux pump, CzcA family protein K07787 cusA; copper/silver efflux system protein D CH53_2889 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D CH53_562 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18324 acrD; multidrug efflux pump D CH53_600 MMPL family protein K07788 mdtB; multidrug efflux pump D CH53_601 acrB/AcrD/AcrF family protein K07789 mdtC; multidrug efflux pump D CH53_4045 small Multidrug Resistance family protein K03297 emrE; small multidrug resistance pump D CH53_1358 sugE; quaternary ammonium compound-resistance protein sugE K11741 sugE; quaternary ammonium compound-resistance protein SugE D CH53_3814 small Multidrug Resistance family protein K11742 mdtI; spermidine export protein MdtI D CH53_3813 small Multidrug Resistance family protein K11743 mdtJ; spermidine export protein MdtJ D CH53_3120 eamA-like transporter family protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D CH53_2314 eamA-like transporter family protein K15268 eamA; O-acetylserine/cysteine efflux transporter D CH53_4294 eamA-like transporter family protein K03298 TC.DME; drug/metabolite transporter, DME family D CH53_3247 rhtA; inner membrane transporter rhtA K11939 rhtA; inner membrane transporter RhtA D CH53_1100 RhaT L-rhamnose-proton symporter family protein K02856 rhaT; L-rhamnose-H+ transport protein D CH53_2006 eamA-like transporter family protein K05786 rarD; chloramphenicol-sensitive protein RarD D CH53_2949 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CH53_4130 small Multidrug Resistance family protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D CH53_3972 hypothetical protein K09771 TC.SMR3; small multidrug resistance family-3 protein D CH53_3033 transporter, gluconate:H+ symporter family protein K16321 gntP; high-affinity gluconate transporter D CH53_1588 gntT; high-affinity gluconate transporter K06155 gntT; Gnt-I system high-affinity gluconate transporter D CH53_876 dsdX; dsdX permease K13629 dsdX; D-serine transporter D CH53_1368 dcuA; anaerobic C4-dicarboxylate transporter dcuA K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA D CH53_803 transporter, anaerobic C4-dicarboxylate uptake family protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB D CH53_3723 chaA; calcium/proton exchanger family protein K07300 chaA; Ca2+:H+ antiporter D CH53_2251 sodium/calcium exchanger family protein K07301 yrbG; cation:H+ antiporter D CH53_1605 phosphate transporter family protein K16322 pit; low-affinity inorganic phosphate transporter D CH53_2191 panF; sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter D CH53_3599 putP; sodium/proline symporter K11928 putP; sodium/proline symporter D CH53_1441 actP; cation/acetate symporter ActP K14393 actP; cation/acetate symporter D CH53_1438 dicarboxylate symporter family protein K11102 gltP; proton glutamate symport protein D CH53_1623 dctA; aerobic C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D CH53_2303 dicarboxylate symporter family protein K07862 sstT; serine/threonine transporter D CH53_1823 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family D CH53_1075 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D CH53_3835 nhaB; Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family D CH53_467 na+/H+ antiporter family protein K03315 nhaC; Na+:H+ antiporter, NhaC family D CH53_470 na+/H+ antiporter family protein K18218 tet35; tetracycline resistance efflux pump D CH53_2167 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter D CH53_41 trkA-C domain protein K11105 cvrA; potassium/hydrogen antiporter D CH53_1504 transporter, monovalent cation:proton antiporter-2 family protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D CH53_1505 NADPH-dependent FMN reductase family protein K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG D CH53_2916 ybaL; inner membrane protein ybaL K26735 KEA4_5_6; K+:H+ antiporter D CH53_2074 potassium uptake, TrkH family protein K03498 trkH; trk/ktr system potassium uptake protein D CH53_1457 trkA; trk system potassium uptake protein trkA K03499 trkA; trk/ktr system potassium uptake protein D CH53_1179 permease for cytosine/purine, uracil, thiamine, allantoin family protein K10974 codB; cytosine permease D CH53_67 ncs1; NCS1 nucleoside transporter family protein K10975 allP; allantoin permease D CH53_583 uracil-xanthine permease family protein K02824 uraA; uracil permease D CH53_1822 pbuX; xanthine permease family protein K16345 xanP; xanthine permease XanP D CH53_1746 permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D CH53_2166 permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D CH53_510 nucleoside transporter, NupC family protein K11535 nupC; nucleoside transport protein D CH53_2807 putative pseudouridine transporter K16324 psuT; putative pseudouridine transporter D CH53_350 aromatic amino acid transport family protein K03834 tyrP; tyrosine-specific transport protein D CH53_249 aromatic amino acid transport family protein K03835 mtr; tryptophan-specific transport protein D CH53_1041 aromatic amino acid transport family protein K03835 mtr; tryptophan-specific transport protein D CH53_214 stp; serine transporter family protein K03837 sdaC; serine transporter D CH53_1392 stp; serine transporter family protein K03838 tdcC; threonine transporter D CH53_3452 citT; citrate carrier K09477 citT; citrate:succinate antiporter D CH53_961 clcA; H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family D CH53_3969 voltage gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family D CH53_723 transition metal uptake transporter, Ni2+-Co2+ transporter family protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D CH53_3769 sulP; sulfate permease family protein K03321 TC.SULP; sulfate permease, SulP family D CH53_509 mntH; manganese transport protein mntH K03322 mntH; manganese transport protein D CH53_2428 pNaS; sodium-dependent inorganic phosphate (Pi) transporter family protein K03324 yjbB; phosphate:Na+ symporter D CH53_3983 arsA; arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D CH53_3982 arsB; arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein D CH53_3305 transporter, anaerobic C4-dicarboxylate uptake C family protein K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family D CH53_1980 wzxE; protein wzxE K16693 wzxE; enterobacterial common antigen flippase D CH53_3787 mviN; murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D CH53_2049 membrane transport family protein K13936 mdcF; malonate transporter and related proteins D CH53_624 membrane transport family protein K13936 mdcF; malonate transporter and related proteins D CH53_1785 kup; potassium uptake protein K03549 kup; KUP system potassium uptake protein D CH53_874 potassium uptake protein K03549 kup; KUP system potassium uptake protein D CH53_2609 argO; arginine exporter protein ArgO K06895 lysE; L-lysine exporter family protein LysE/ArgO D CH53_2011 rhtB; homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D CH53_2010 rhtC; threonine efflux protein K05835 rhtC; threonine efflux protein D CH53_1064 lysE type translocator family protein K05835 rhtC; threonine efflux protein D CH53_2768 ygaZ; inner membrane protein YgaZ K26605 azlC; branched chain amino acid efflux pump D CH53_2767 branched-chain amino acid transport family protein K26606 azlD; branched chain amino acid efflux pump D CH53_1170 tripartite tricarboxylate transporter TctA family protein K07793 tctA; putative tricarboxylic transport membrane protein D CH53_1169 tripartite tricarboxylate transporter TctB family protein K07794 tctB; putative tricarboxylic transport membrane protein D CH53_1168 tripartite tricarboxylate transporter receptor family protein K07795 tctC; putative tricarboxylic transport membrane protein D CH53_2211 aluminum activated malate transporter family protein K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB D CH53_2444 fusaric acid resistance family protein K15547 mdtO; multidrug resistance protein MdtO D CH53_579 hypothetical protein K03548 perM; putative permease D CH53_2020 hypothetical protein K09125 yhhQ; queuosine precursor transporter D CH53_2484 VIT family protein K22736 VIT; vacuolar iron transporter family protein D CH53_4245 marC integral membrane family protein K05595 marC; multiple antibiotic resistance protein D CH53_1019 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW D CH53_4357 hypothetical protein K23242 mntP; manganese efflux pump family protein D CH53_3600 iron permease FTR1 family protein K07243 FTR; high-affinity iron transporter D CH53_3704 iron permease FTR1 family protein K07243 FTR; high-affinity iron transporter D CH53_3601 imelysin family protein K07224 efeO; iron uptake system component EfeO D CH53_3602 Dyp-type peroxidase family protein K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D CH53_3705 fe2+ transport family protein K07230 p19; periplasmic iron binding protein D CH53_650 high-affinity nickel-transport family protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein D CH53_2988 PQ loop repeat family protein K15383 K15383; MtN3 and saliva related transmembrane protein D CH53_3886 hypothetical protein K03832 tonB; periplasmic protein TonB D CH53_1923 hypothetical protein K03832 tonB; periplasmic protein TonB D CH53_3156 pal; peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D CH53_4208 hypothetical protein K03646 tolA; colicin import membrane protein D CH53_3154 tolA; protein TolA K03646 tolA; colicin import membrane protein D CH53_3155 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D CH53_421 cytochrome C biogenesis transmembrane region family protein K08344 scsB; suppressor for copper-sensitivity B D CH53_3684 nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-] D CH53_3685 narH; nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-] D CH53_3687 narI; respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-] D CH53_839 dmsA; anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D CH53_491 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D CH53_838 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D CH53_492 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D CH53_837 DMSO reductase anchor subunit family protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D CH53_493 DMSO reductase anchor subunit family protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D CH53_236 cytochrome c554 and c-prime family protein K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC D CH53_237 molybdopterin guanine dinucleotide-containing S/N-oxide reductases family protein K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3] D CH53_2677 molybdopterin oxidoreductase family protein K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] D CH53_25 molybdopterin oxidoreductase family protein K08357 ttrA; tetrathionate reductase subunit A D CH53_27 4Fe-4S dicluster domain protein K08358 ttrB; tetrathionate reductase subunit B D CH53_26 polysulfide reductase, NrfD family protein K08359 ttrC; tetrathionate reductase subunit C D CH53_2765 efflux pump membrane family protein K03543 emrA; membrane fusion protein, multidrug efflux system D CH53_2443 efflux transporter, RND family, MFP subunit K15549 mdtN; membrane fusion protein, multidrug efflux system D CH53_1922 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system D CH53_3005 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system D CH53_2391 efflux transporter, RND family, MFP subunit K07798 cusB; membrane fusion protein, copper/silver efflux system D CH53_3940 type I secretion membrane fusion, HlyD family protein K12532 rtxD; membrane fusion protein, RTX toxin transport system D CH53_2890 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D CH53_3177 hypothetical protein K25859 acrZ; accessory protein, multidrug efflux pump D CH53_599 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system D CH53_530 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D CH53_179 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D CH53_890 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system D CH53_2210 efflux transporter, RND family, MFP subunit K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA D CH53_3163 pnuC; nicotinamide mononucleotide transporter PnuC family protein K03811 pnuC; nicotinamide mononucleotide transporter D CH53_1561 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D CH53_1562 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D CH53_1563 feoC; ferrous iron transport protein C K07490 feoC; ferrous iron transport protein C D CH53_1606 uspB; universal stress protein B K06144 uspB; universal stress protein B D CH53_1360 entericidin EcnA/B family protein K16348 ecnB; entericidin B D CH53_446 ccmF; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D CH53_3528 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D CH53_4044 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D CH53_4335 yebZ; inner membrane protein YebZ K07245 pcoD; copper resistance protein D D CH53_4336 copC domain protein K07156 copC; copper resistance protein C D CH53_3845 mipA; mltA-interacting protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:yin02044] D CH53_2343 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D CH53_3939 type I secretion system ATPase family protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB D CH53_3941 type I secretion system ATPase family protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D CH53_3940 type I secretion membrane fusion, HlyD family protein K12532 rtxD; membrane fusion protein, RTX toxin transport system D CH53_1921 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D CH53_3004 type I secretion system ATPase family protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D CH53_1922 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system D CH53_3005 type I secretion membrane fusion, HlyD family protein K12537 hasE; membrane fusion protein, type I secretion system D CH53_3006 type I secretion outer membrane, TolC family protein K12538 hasF; outer membrane protein, type I secretion system D CH53_2655 type IV pilus biogenesis family protein K02452 gspC; general secretion pathway protein C D CH53_2656 gspD; type II secretion system protein D K02453 gspD; general secretion pathway protein D D CH53_2657 epsE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D CH53_2658 type II secretion system (T2SS), F family protein K02455 gspF; general secretion pathway protein F D CH53_2659 gspG; type II secretion system protein G K02456 gspG; general secretion pathway protein G D CH53_2660 type II secretion system (T2SS), I family protein K02458 gspI; general secretion pathway protein I D CH53_2661 gspJ; type II secretion system protein J K02459 gspJ; general secretion pathway protein J D CH53_2662 type II secretion system (T2SS), K family protein K02460 gspK; general secretion pathway protein K D CH53_2663 gspL periplasmic domain protein K02461 gspL; general secretion pathway protein L D CH53_2666 type IV leader peptidase family protein K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D CH53_2665 bacterial chaperone lipo family protein K02465 gspS; general secretion pathway protein S D CH53_631 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D CH53_2588 twitching motility family protein K02669 pilT; twitching motility protein PilT D CH53_2386 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D CH53_2385 putative tight adherance operon protein K02279 cpaB; pilus assembly protein CpaB D CH53_2384 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D CH53_2382 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D CH53_2381 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CH53_2380 type II secretion system (T2SS), F family protein K12510 tadB; tight adherence protein B D CH53_2378 type II secretion system (T2SS), F family protein K12511 tadC; tight adherence protein C D CH53_2377 TPR repeat family protein K12512 tadD; tight adherence protein D D CH53_2376 tadE-like family protein K12513 tadE; tight adherence protein E D CH53_2375 putative tight adherance operon protein K12514 tadF; tight adherence protein F D CH53_2374 von Willebrand factor type A domain protein K12515 tadG; tight adherence protein G D CH53_2688 hypothetical protein K02679 ppdA; prepilin peptidase dependent protein A D CH53_2689 hypothetical protein K02680 ppdB; prepilin peptidase dependent protein B D CH53_2691 hypothetical protein K02681 ppdC; prepilin peptidase dependent protein C D CH53_1001 hypothetical protein K02682 ppdD; prepilin peptidase dependent protein D D CH53_1002 type II/IV secretion system family protein K02504 hofB; protein transport protein HofB D CH53_1003 type II secretion system (T2SS), F family protein K02505 hofC; protein transport protein HofC D CH53_1548 putative ATPases of the HSP70 class involved in cell division K12288 hofM; pilus assembly protein HofM D CH53_1547 fimbrial assembly family protein K12289 hofN; pilus assembly protein HofN D CH53_1546 putative membrane protein K12290 hofO; pilus assembly protein HofO D CH53_1545 hypothetical protein K12291 hofP; pilus assembly protein HofP D CH53_1544 pilQ; type IV pilus secretin PilQ family protein K02507 hofQ; protein transport protein HofQ D CH53_2585 YGGT family protein K02221 yggT; YggT family protein D CH53_2866 competence ComEA helix-hairpin-helix repeat region domain protein K02237 comEA; competence protein ComEA D CH53_152 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D CH53_1434 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C D CH53_1433 type III secretion apparatus protein, YscD/HrpQ family K03220 yscD; type III secretion protein D D CH53_1421 eprI; type III secretion apparatus needle protein K03221 yscF; type III secretion protein F D CH53_1418 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J D CH53_1412 ATPase, FliI/YscN family protein K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D CH53_1410 epaO; type III secretion apparatus protein, YscQ/HrcQ family K03225 yscQ; type III secretion protein Q D CH53_1409 epaP; type III secretion apparatus protein, YscR/HrcR family K03226 yscR; type III secretion protein R D CH53_1408 type III secretion, HrpO family protein K03227 yscS; type III secretion protein S D CH53_1407 epaR; type III secretion apparatus protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T D CH53_1406 type III secretion, YscU/HrpY family protein K03229 yscU; type III secretion protein U D CH53_1413 type III secretion, HrcV family protein K03230 yscV; type III secretion protein V D CH53_2402 FHIPEP family protein K02400 flhA; flagellar biosynthesis protein FlhA D CH53_3545 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CH53_3544 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D CH53_3574 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D CH53_3572 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D CH53_3571 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CH53_3566 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CH53_3565 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D CH53_3564 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D CH53_3563 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CH53_3562 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D CH53_2636 DSBA-like thioredoxin domain protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D CH53_2307 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin D CH53_3831 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D CH53_2136 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D CH53_3832 hypothetical protein K11016 shlA; hemolysin D CH53_3422 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D CH53_2554 intracellular multiplication and macrophage-killing family protein K11891 impL; type VI secretion system protein ImpL D CH53_3410 type IV/VI secretion system, DotU family domain protein K11892 impK; type VI secretion system protein ImpK D CH53_2553 type VI secretion system peptidoglycan-associated domain protein K11892 impK; type VI secretion system protein ImpK D CH53_3409 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D CH53_2552 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D CH53_3425 hypothetical protein K11895 impH; type VI secretion system protein ImpH D CH53_2541 hypothetical protein K11895 impH; type VI secretion system protein ImpH D CH53_3424 hypothetical protein K11896 impG; type VI secretion system protein ImpG D CH53_2542 hypothetical protein K11896 impG; type VI secretion system protein ImpG D CH53_2559 lysozyme family protein K11897 impF; type VI secretion system protein ImpF D CH53_3408 hypothetical protein K11900 impC; type VI secretion system protein ImpC D CH53_2549 hypothetical protein K11900 impC; type VI secretion system protein ImpC D CH53_3407 hypothetical protein K11901 impB; type VI secretion system protein ImpB D CH53_2548 hypothetical protein K11901 impB; type VI secretion system protein ImpB D CH53_2540 hypothetical protein K11902 impA; type VI secretion system protein ImpA D CH53_3412 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D CH53_906 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D CH53_2550 type VI secretion system effector, Hcp1 family protein K11903 hcp; type VI secretion system secreted protein Hcp D CH53_3417 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D CH53_2555 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG D CH53_3427 lysozyme family protein K11905 K11905; type VI secretion system protein D CH53_2551 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D CH53_3426 type VI secretion lipofamily protein K11906 vasD; type VI secretion system protein VasD D CH53_3414 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D CH53_2543 clpV; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG D CH53_3423 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ D CH53_3428 hypothetical protein K11911 vasL; type VI secretion system protein VasL D CH53_2558 impE family protein K11898 impE; type VI secretion system protein ImpE D CH53_3510 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_3513 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_92 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_2544 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_3434 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_1630 putative fimbrial subunit protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_1963 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_2448 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_320 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_3514 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_93 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_1962 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2449 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2452 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2453 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_3512 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_94 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_319 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_2546 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_3432 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1628 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1961 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1203 fimbrial family protein K07349 fimG; minor fimbrial subunit D CH53_1202 hypothetical protein K12518 papC; outer membrane usher protein PapC D CH53_3671 hypothetical protein K12518 papC; outer membrane usher protein PapC D CH53_901 hypothetical protein K12518 papC; outer membrane usher protein PapC D CH53_1669 hypothetical protein K12518 papC; outer membrane usher protein PapC D CH53_1201 hypothetical protein K12519 papD; chaperone protein PapD D CH53_3670 hypothetical protein K12519 papD; chaperone protein PapD D CH53_900 hypothetical protein K12519 papD; chaperone protein PapD D CH53_1009 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CH53_1875 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D CH53_2834 secD; export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CH53_2089 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CH53_2835 secF; export membrane protein secF K03074 secF; preprotein translocase subunit SecF D CH53_1284 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CH53_1010 secretion monitor family protein K13301 secM; secretion monitor D CH53_1468 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CH53_809 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CH53_2028 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CH53_2833 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CH53_1735 yidC; membrane protein insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase D CH53_2062 tatA; twin arginine-targeting translocase, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA D CH53_2063 tatB; twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D CH53_2064 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D CH53_3057 tatA; twin arginine-targeting translocase, TatA/E family protein K03425 tatE; sec-independent protein translocase protein TatE C 02042 Bacterial toxins [BR:yin02042] D CH53_4064 pertussis toxin, subunit 1 family protein K11023 ptxA; pertussis toxin subunit 1 [EC:2.4.2.-] D CH53_1314 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D CH53_811 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D CH53_3832 hypothetical protein K11016 shlA; hemolysin D CH53_3831 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D CH53_2136 shlB; hemolysin transporter protein shlB K11017 shlB; hemolysin activation/secretion protein D CH53_2626 hypothetical protein K11068 hlyIII; hemolysin III D CH53_2992 GDSL-like Lipase/Acylhydrolase family protein K11018 tlh; thermolabile hemolysin C 02022 Two-component system [BR:yin02022] D CH53_2822 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CH53_2821 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D CH53_4407 phoQ; virulence sensor histidine kinase phoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CH53_4406 phoP; transcriptional regulatory protein phoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D CH53_1557 HAMP domain protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D CH53_1558 ompR; transcriptional regulatory protein ompR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D CH53_4031 HAMP domain protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3] D CH53_4030 response regulator K07661 rstA; two-component system, OmpR family, response regulator RstA D CH53_1880 cpxA; sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D CH53_1881 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR D CH53_2631 HAMP domain protein K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D CH53_2630 response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D CH53_602 HAMP domain protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D CH53_603 response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR D CH53_1293 HAMP domain protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D CH53_1292 hypothetical protein K07771 basR; two-component system, OmpR family, response regulator BasR D CH53_3122 universal stress family protein K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D CH53_3121 kdpE; KDP operon transcriptional regulatory protein kdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D CH53_2271 sensory box protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D CH53_1088 hypothetical protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D CH53_1166 HAMP domain protein K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D CH53_1167 hypothetical protein K07774 tctD; two-component system, OmpR family, response regulator TctD D CH53_528 HAMP domain protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D CH53_529 response regulator K02483 K02483; two-component system, OmpR family, response regulator D CH53_2352 response regulator K02483 K02483; two-component system, OmpR family, response regulator D CH53_3727 narX; nitrate/nitrite sensor protein narX K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D CH53_3681 bacterial regulatory s, luxR family protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D CH53_560 bacterial regulatory s, luxR family protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D CH53_1649 histidine kinase family protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D CH53_1650 uhpA; transcriptional regulatory protein uhpA K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D CH53_3442 histidine kinase family protein K20263 fusK; two-component system, NarL family, sensor histidine kinase FusK [EC:2.7.13.3] D CH53_3443 bacterial regulatory s, luxR family protein K20264 fusR; two-component system, NarL family, response regulator FusR D CH53_338 rcsC Alpha-Beta-Loop family protein K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D CH53_336 hpt domain protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] D CH53_337 rcsB; rcsB protein K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D CH53_954 HAMP domain protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D CH53_3620 uvrY; response regulator K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D CH53_2563 evgS; sensor protein evgS K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D CH53_3165 his Kinase A domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D CH53_3435 hpt domain protein K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D CH53_2562 evgA; positive transcription regulator evgA K07690 evgA; two-component system, NarL family, response regulator EvgA D CH53_3166 bacterial regulatory s, luxR family protein K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D CH53_3436 bvgA; virulence factors putative positive transcription regulator BvgA K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D CH53_3445 dpiB; sensor histidine kinase DpiB K07700 dpiB; two-component system, CitB family, cit operon sensor histidine kinase CitA [EC:2.7.13.3] D CH53_3444 dpiA; transcriptional regulatory protein DpiA K07702 dpiA; two-component system, CitB family, response regulator CitB D CH53_3691 PAS fold family protein K07701 dcuS; two-component system, CitB family, sensor histidine kinase DcuS [EC:2.7.13.3] D CH53_3690 dcuR; transcriptional regulatory protein dcuR K07703 dcuR; two-component system, CitB family, response regulator DcuR D CH53_1581 histidine kinase family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D CH53_501 5TMR of 5TMR-LYT family protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D CH53_802 response regulator K02477 K02477; two-component system, LytTR family, response regulator D CH53_502 ypdB; response regulator K02477 K02477; two-component system, LytTR family, response regulator D CH53_1808 glnL; nitrogen regulation protein NR K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D CH53_1807 ntrC; nitrogen regulation protein NR K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D CH53_3464 his Kinase A domain protein K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] D CH53_3463 zraR; transcriptional regulatory protein zraR K07713 zraR; two-component system, NtrC family, response regulator HydG D CH53_2129 sensory box protein K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3] D CH53_2128 bacterial regulatory, Fis family protein K07714 atoC; two-component system, NtrC family, response regulator AtoC D CH53_666 HAMP domain protein K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D CH53_664 AAA domain family protein K07715 glrR; two-component system, NtrC family, response regulator GlrR D CH53_3536 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CH53_3542 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CH53_3541 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CH53_3399 response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CH53_28 his Kinase A domain protein K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3] D CH53_29 bacterial regulatory s, luxR family protein K13041 ttrR; two-component system, LuxR family, response regulator TtrR D CH53_1436 HAMP domain protein K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA D CH53_1437 bacterial regulatory s, luxR family protein K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB D CH53_3867 response regulator K02485 rssB; two-component system, response regulator C 02035 Bacterial motility proteins [BR:yin02035] D CH53_3536 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CH53_3537 cheW-like domain protein K03408 cheW; purine-binding chemotaxis protein CheW D CH53_3540 cheR; chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CH53_3541 cheB methylesterase family protein K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CH53_3542 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CH53_3543 cheZ; protein phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ D CH53_3399 response regulator K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CH53_3616 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_1389 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_2400 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_3105 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_1741 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_300 methyl-accepting chemotaxis (MCP) signaling domain protein K03406 mcp; methyl-accepting chemotaxis protein D CH53_3538 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D CH53_2670 hypothetical protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D CH53_1684 methyl-accepting chemotaxis (MCP) signaling domain protein K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D CH53_3527 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor D CH53_3539 tap; methyl-accepting chemotaxis protein IV K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D CH53_4393 sensory box protein K03776 aer; aerotaxis receptor D CH53_3572 flagellar assembly FliH family protein K02411 fliH; flagellar assembly protein FliH D CH53_3571 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CH53_3570 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D CH53_3565 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D CH53_3564 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D CH53_3563 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CH53_3562 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D CH53_2402 FHIPEP family protein K02400 flhA; flagellar biosynthesis protein FlhA D CH53_3545 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CH53_3544 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D CH53_3547 flhE; flagellar protein flhE K03516 flhE; flagellar protein FlhE D CH53_3573 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CH53_3567 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CH53_3566 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CH53_3574 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D CH53_3558 flagellar P-ring family protein K02394 flgI; flagellar P-ring protein FlgI D CH53_3550 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D CH53_3557 flagellar L-ring family protein K02393 flgH; flagellar L-ring protein FlgH D CH53_3568 flagellar basal body-associated FliL family protein K02415 fliL; flagellar protein FliL D CH53_3575 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D CH53_3569 flagellar hook-length control FliK family protein K02414 fliK; flagellar hook-length control protein FliK D CH53_3551 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D CH53_3552 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D CH53_3553 hypothetical protein K02389 flgD; flagellar basal-body rod modification protein FlgD D CH53_3555 flgF; flagellar basal-body rod protein flgF K02391 flgF; flagellar basal-body rod protein FlgF D CH53_3556 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D CH53_3559 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D CH53_3554 flagellar hook-basal body family protein K02390 flgE; flagellar hook protein FlgE D CH53_3560 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D CH53_3561 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D CH53_3548 flgN family protein K02399 flgN; flagellar biosynthesis protein FlgN D CH53_588 putative zinc-/iron-chelating domain protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-] D CH53_3590 hypothetical protein K02406 fliC; flagellin D CH53_3589 fliD; flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D CH53_3588 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D CH53_3587 fliT; flagellar protein FliT K02423 fliT; flagellar protein FliT D CH53_3532 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D CH53_3034 flagellar transcriptional activator family protein K02403 flhD; flagellar transcriptional activator FlhD D CH53_3533 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D CH53_3035 flhC; flagellar transcriptional regulator FlhC K02402 flhC; flagellar transcriptional activator FlhC D CH53_3591 fliA; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D CH53_3534 motA; flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D CH53_3535 motB; motility protein B K02557 motB; chemotaxis protein MotB D CH53_2403 ompA family protein K02557 motB; chemotaxis protein MotB D CH53_3594 bacterial extracellular solute-binding s, 3 family protein K02424 tcyA; L-cystine transport system substrate-binding protein D CH53_3592 fliZ; flagellar regulatory protein FliZ K02425 fliZ; regulator of sigma S factor FliZ D CH53_3549 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D CH53_2588 twitching motility family protein K02669 pilT; twitching motility protein PilT D CH53_631 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF D CH53_2386 type IV leader peptidase family protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D CH53_2385 putative tight adherance operon protein K02279 cpaB; pilus assembly protein CpaB D CH53_2384 bacterial type II and III secretion system family protein K02280 cpaC; pilus assembly protein CpaC D CH53_2382 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D CH53_2381 type II/IV secretion system family protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D CH53_3510 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_3513 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_92 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_2544 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_3434 fimbrial family protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_1630 putative fimbrial subunit protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_1963 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_2448 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_320 hypothetical protein K07345 fimA; major type 1 subunit fimbrin (pilin) D CH53_3514 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_93 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_1962 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2449 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2452 hypothetical protein K07346 fimC; fimbrial chaperone protein D CH53_2453 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_3512 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_94 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_319 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_2546 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_3432 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1628 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1961 hypothetical protein K07347 fimD; outer membrane usher protein D CH53_1203 fimbrial family protein K07349 fimG; minor fimbrial subunit C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:yin04812] D CH53_2200 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins D CH53_1013 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CH53_1014 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CH53_3823 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D CH53_3822 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D CH53_3821 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor C 04147 Exosome [BR:yin04147] D CH53_2903 hsp90 family protein K04079 HSP90A; molecular chaperone HtpG D CH53_949 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CH53_3847 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CH53_2606 phosphoglycerate kinase family protein K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CH53_4108 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CH53_3809 pyk; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CH53_1526 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D CH53_2829 hypothetical protein K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D CH53_1364 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CH53_1077 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CH53_2139 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CH53_4237 SMP-30/Gluconolaconase/LRE-like region family protein K01053 gnl; gluconolactonase [EC:3.1.1.17] D CH53_621 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CH53_2088 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CH53_1492 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu D CH53_4423 HIT domain protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CH53_3950 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D CH53_1032 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_3819 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_2480 AMP-binding enzyme family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D CH53_2124 acetyl-CoA C-acyltransferase family protein K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CH53_2904 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CH53_2897 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CH53_1915 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CH53_3397 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CH53_218 cys/Met metabolism PLP-dependent enzyme family protein K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CH53_471 metB; O-succinylhomoserine (thiol)-lyase K01758 CTH; cystathionine gamma-lyase [EC:4.4.1.1] D CH53_3996 N(G),N(G)-dimethylarginine dimethylaminohydrolase K01482 DDAH; dimethylargininase [EC:3.5.3.18] D CH53_1308 fructose-1-6-bisphosphatase family protein K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D CH53_3171 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D CH53_1580 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D CH53_1895 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CH53_828 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30] D CH53_1809 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CH53_2066 delta-aminolevulinic acid dehydratase family protein K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CH53_4016 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D CH53_2613 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CH53_2111 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CH53_1926 pyridine nucleotide-disulfide oxidoreductase family protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_993 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CH53_3811 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D CH53_1889 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CH53_3168 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D CH53_1357 lipocalin-like domain protein K03098 APOD; apolipoprotein D and lipocalin family protein C 02048 Prokaryotic defense system [BR:yin02048] D CH53_1540 dam; DNA adenine methylase family protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] D CH53_1231 DEAD/DEAH box helicase family protein K01156 res; type III restriction enzyme [EC:3.1.21.5] D CH53_1232 DNA methylase family protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D CH53_3012 AAA domain family protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D CH53_3011 mcrBC 5-methylcytosine restriction system component family protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D CH53_3112 toxin SymE, type I toxin-antitoxin system family protein K19048 symE; toxic protein SymE D CH53_553 relE; mRNA interferase RelE K06218 relE; mRNA interferase RelE/StbE D CH53_554 antitoxin Phd YefM, type II toxin-antitoxin system family protein K18923 stbD; antitoxin StbD D CH53_1687 yafQ; mRNA interferase YafQ K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-] D CH53_1686 addiction module antitoxin, RelB/DinJ family protein K07473 dinJ; DNA-damage-inducible protein J D CH53_2163 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1] D CH53_2164 helix-turn-helix family protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D CH53_496 hypothetical protein K18843 hicB; antitoxin HicB D CH53_459 toxin YafO, type II toxin-antitoxin system family protein K19160 yafO; mRNA interferase YafO [EC:3.1.-.-] D CH53_2881 hha; hemolysin expression-modulating protein K05839 hha; haemolysin expression modulating protein D CH53_2882 biofilm formation regulator YbaJ family protein K19162 tomB; hha toxicity modulator TomB D CH53_4059 pspC; phage shock protein C K03973 pspC; phage shock protein C D CH53_4060 pspB; phage shock protein B K03970 pspB; phage shock protein B D CH53_1524 ccdB; ccdB K19163 ccdB; toxin CcdB D CH53_1523 post-segregation antitoxin CcdA family protein K19164 ccdA; antitoxin CcdA D CH53_2229 plasmid maintenance system killer family protein K07334 higB-1; toxin HigB-1 D CH53_2228 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1 D CH53_1243 hypothetical protein K19334 tabA; biofilm protein TabA D CH53_18 bssS family protein K12148 bssS; biofilm regulator BssS D CH53_3917 bhsA; multiple stress resistance protein BhsA K12151 bhsA; multiple stress resistance protein BhsA D CH53_1013 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CH53_2200 mreB; rod shape-determining protein mreB K03569 mreB; rod shape-determining protein MreB and related proteins D CH53_2361 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CH53_2348 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CH53_515 gltX; glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D CH53_2979 hypothetical protein K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins D CH53_2980 putative antitoxin YfjZ K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins D CH53_2629 hypothetical protein K19168 cptA; toxin CptA D CH53_2628 flavinator of succinate dehydrogenase family protein K09159 cptB; antitoxin CptB D CH53_646 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:yin01504] D CH53_470 na+/H+ antiporter family protein K18218 tet35; tetracycline resistance efflux pump D CH53_1674 mdfA; multidrug transporter MdfA K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D CH53_3958 bacterial transferase hexapeptide family protein K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D CH53_3975 hexapeptide repeat of succinyl-transferase family protein K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D CH53_478 major Facilitator Superfamily protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D CH53_3963 bla; beta-lactamase Toho-1 K17836 penP; beta-lactamase class A [EC:3.5.2.6] D CH53_4407 phoQ; virulence sensor histidine kinase phoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D CH53_4406 phoP; transcriptional regulatory protein phoP K07660 phoP; two-component system, OmpR family, response regulator PhoP D CH53_2890 acrA; acriflavine resistance protein A K03585 acrA; membrane fusion protein, multidrug efflux system D CH53_2889 RND transporter, hydrophobe/amphiphile efflux-1 family protein K18138 acrB; multidrug efflux pump D CH53_2922 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D CH53_2343 type I secretion outer membrane, TolC family protein K12340 tolC; outer membrane protein D CH53_2562 evgA; positive transcription regulator evgA K07690 evgA; two-component system, NarL family, response regulator EvgA D CH53_2947 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D CH53_3019 bacterial regulatory helix-turn-helix, lysR family protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D CH53_132 gram-negative porin family protein K09476 ompF; outer membrane pore protein F C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:yin00536] D CH53_3110 hypothetical protein K15125 fhaB; filamentous hemagglutinin D CH53_1183 hypothetical protein K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:yin00537] D CH53_4016 alkaline phosphatase family protein K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:yin03100] D CH53_516 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_517 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_1937 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_2755 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_2115 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CH53_1985 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_2937 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_816 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_818 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_817 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_454 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CH53_3429 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CH53_3505 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CH53_3437 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CH53_762 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CH53_1940 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CH53_789 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CH53_3624 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CH53_3089 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CH53_3086 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CH53_3088 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CH53_1445 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CH53_1795 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CH53_2077 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CH53_792 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CH53_2640 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_2086 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_1345 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_1346 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_1347 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_3623 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CH53_1986 tRNA-His K14226 tRNA-His; tRNA His D CH53_1936 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CH53_2754 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CH53_2114 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CH53_1987 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1131 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1130 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1132 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1283 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_3090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_3625 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_1234 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CH53_3158 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_511 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3161 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3160 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3159 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3608 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CH53_3087 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_3091 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_2323 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_1282 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_2700 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_2699 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_2698 tRNA-Met K14230 tRNA-Met; tRNA Met D CH53_1381 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CH53_2572 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CH53_272 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CH53_1647 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CH53_1988 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CH53_819 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_3771 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_3773 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_102 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_333 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CH53_2087 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CH53_2118 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CH53_2084 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CH53_304 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CH53_1941 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CH53_2085 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CH53_3862 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CH53_3860 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CH53_512 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_514 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_513 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_4105 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_4106 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_4107 tRNA-Val K14237 tRNA-Val; tRNA Val D CH53_1660 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D CH53_1794 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_2753 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_2113 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_2076 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_793 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_1446 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_1935 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CH53_1796 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_2116 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_2078 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_1938 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_791 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_1444 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_2756 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CH53_1797 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2117 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2079 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2757 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_1939 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_790 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_1443 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CH53_2119 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D CH53_365 short chain dehydrogenase family protein K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D CH53_2367 dkgA; 2,5-diketo-D-gluconic acid reductase A K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D CH53_2239 3-beta hydroxysteroid dehydrogenase/isomerase family protein K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D CH53_3337 iron-containing alcohol dehydrogenase family protein K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-] D CH53_507 aldo/keto reductase family protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D CH53_718 aldo/keto reductase family protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D CH53_717 glucose / Sorbosone dehydrogenase family protein K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D CH53_2311 flavin oxidoreductase / NADH oxidase family protein K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D CH53_3530 zinc-binding dehydrogenase family protein K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-] D CH53_19 solA; N-methyl-L-tryptophan oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-] D CH53_2156 zinc-binding dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D CH53_3522 NAD(P)H quinone oxidoreductase, PIG3 family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D CH53_1109 zinc-binding alcohol dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D CH53_2351 flavodoxin-like fold family protein K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D CH53_4038 NADPH-dependent FMN reductase family protein K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D CH53_1313 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D CH53_3848 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D CH53_3987 hypothetical protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D CH53_2287 hypothetical protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D CH53_2197 oxidoreductase molybdopterin binding domain protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D CH53_2485 hypothetical protein K12262 cybB; superoxide oxidase [EC:1.10.3.17] D CH53_578 putative peroxiredoxin bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CH53_4052 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CH53_1652 peroxiredoxin, Ohr subfamily protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D CH53_545 Dyp-type peroxidase family protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D CH53_1590 putative quercetin 2,3-dioxygenase yhhW K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D CH53_655 globin family protein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D CH53_4337 ferritin-like domain protein K02217 ftnA; ferritin [EC:1.16.3.2] D CH53_984 cueO; blue copper oxidase CueO K14588 cueO; cuproxidase [EC:1.16.3.4] D CH53_1892 oxidoreductase NAD-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D CH53_3990 norW; nitric oxide reductase FlRd-NAD(+) reductase K12265 norW; nitric oxide reductase FlRd-NAD(+) reductase [EC:1.18.1.-] D CH53_581 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D CH53_3981 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D CH53_1252 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D CH53_162 pflA; pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CH53_1044 glycyl-radical enzyme activating family protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CH53_2986 radical SAM superfamily protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CH53_184 hcr; NADH oxidoreductase hcr K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-] D CH53_3287 4Fe-4S dicluster domain protein K12136 hyfA; hydrogenase-4 component A [EC:1.-.-.-] D CH53_3286 hyfB; hydrogenase-4 component B K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-] D CH53_3285 hyfC; hydrogenase-4 component C K12138 hyfC; hydrogenase-4 component C [EC:1.-.-.-] D CH53_3284 NADH-Ubiquinone/plastoquinone (complex I), various chains family protein K12139 hyfD; hydrogenase-4 component D [EC:1.-.-.-] D CH53_3283 hyfE; hydrogenase-4 component E K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-] D CH53_3282 NADH-Ubiquinone/plastoquinone (complex I), various chains family protein K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-] D CH53_3281 nickel-dependent hydrogenase family protein K12142 hyfG; hydrogenase-4 component G [EC:1.-.-.-] D CH53_3279 NADH ubiquinone oxidoreductase, 20 Kd subunit K12144 hyfI; hydrogenase-4 component I [EC:1.-.-.-] D CH53_3278 formate hydrogenlyase maturation HycH family protein K12145 hyfJ; hydrogenase-4 component J [EC:1.-.-.-] D CH53_926 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D CH53_4102 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D CH53_2491 methyltransferase small domain protein K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D CH53_3246 methyltransferase domain protein K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D CH53_3712 tehB; tellurite resistance protein TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265] D CH53_1146 carbamoyltransferase family protein K00612 nodU; carbamoyltransferase [EC:2.1.3.-] D CH53_39 acyltransferase family protein K11941 mdoC; glucans biosynthesis protein C [EC:2.1.-.-] D CH53_3078 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D CH53_1267 acetyltransferase family protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D CH53_1698 acetyltransferase family protein K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D CH53_1240 acetyltransferase domain protein K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D CH53_173 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D CH53_2761 DTW domain protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D CH53_2686 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D CH53_3357 cob(I)alamin adenosyltransferase K27270 pduO; corrinoid adenosyltransferase [EC:2.5.1.-] D CH53_1724 bglK; beta-glucoside kinase K18673 bglK; beta-glucoside kinase [EC:2.7.1.85] D CH53_3997 apbE; thiamine biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D CH53_2793 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D CH53_3694 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D CH53_4121 putative phosphotransferase ydiA K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D CH53_2335 glutamate-ammonia ligase adenylyltransferase family protein K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D CH53_1838 reverse transcriptase family protein K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D CH53_3770 diguanylate cyclase domain protein K18967 dge1; diguanylate cyclase [EC:2.7.7.65] D CH53_2424 diguanylate cyclase domain protein K18967 dge1; diguanylate cyclase [EC:2.7.7.65] D CH53_4126 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D CH53_2123 isocitrate dehydrogenase kinase/phosphatase family protein K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D CH53_2395 hypothetical protein K07214 fes; iron(III)-enterobactin esterase [EC:3.1.1.108] D CH53_3151 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D CH53_778 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D CH53_3050 serine/threonine-protein phosphatase K07313 pphA; serine/threonine protein phosphatase 1 [EC:3.1.3.16] D CH53_3900 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D CH53_437 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D CH53_134 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D CH53_258 EAL domain protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D CH53_1631 diguanylate cyclase domain protein K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52] D CH53_2595 endonuclease I family protein K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D CH53_2065 tatD related DNase family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CH53_918 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CH53_4425 hydrolase, TatD family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CH53_1120 tatD related DNase family protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CH53_3108 PGAP1-like family protein K01175 ybfF; esterase [EC:3.1.-.-] D CH53_2801 alpha/beta hydrolase family protein K11750 frsA; esterase FrsA [EC:3.1.-.-] D CH53_1633 glycosyl hydrolases 8 family protein K20542 bcsZ; endoglucanase [EC:3.2.1.4] D CH53_4185 phage lysozyme family protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D CH53_294 phage lysozyme family protein K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D CH53_1967 pehX; exo-poly-alpha-D-galacturonosidase K18650 pehX; exo-poly-alpha-galacturonosidase [EC:3.2.1.82] D CH53_330 glycosyl Hydrolase Family 88 family protein K15532 yteR; unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172] D CH53_1454 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CH53_711 ydjC-like family protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105] D CH53_4344 ASCH domain protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D CH53_2235 reactive intermediate/imine deaminase family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D CH53_4008 endoribonuclease L-PSP family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D CH53_2334 CYTH domain protein K18446 ygiF; triphosphatase [EC:3.6.1.25] D CH53_2870 cof; HMP-PP phosphatase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-] D CH53_552 nudK; GDP-mannose pyrophosphatase nudK K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-] D CH53_12 maf; septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D CH53_1784 AAA domain family protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D CH53_3695 hypothetical protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D CH53_3924 fsa; fructose-6-phosphate aldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-] D CH53_1343 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D CH53_2704 csdA; cysteine desulfurase, catalytic subunit CsdA K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-] D CH53_845 fucU; L-fucose mutarotase K02431 fucU; L-fucose mutarotase [EC:5.1.3.29] D CH53_1107 rhaM; L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D CH53_613 sugar isomerase, KpsF/GutQ family protein K02467 gutQ; arabinose 5-phosphate isomerase [EC:5.3.1.13] D CH53_3696 xylose isomerase-like TIM barrel family protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D CH53_1306 mpl; L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D CH53_3932 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D CH53_3934 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D CH53_3935 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D CH53_2787 nqrA; ubiquinone oxidoreductase, Na(+)-translocating, A subunit K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D CH53_2788 nqrB; ubiquinone oxidoreductase, Na(+)-translocating, B subunit K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D CH53_2789 nqrC; ubiquinone oxidoreductase, Na(+)-translocating, C subunit K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D CH53_2790 nqrD; ubiquinone oxidoreductase, Na(+)-translocating, D subunit K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D CH53_2791 nqrE; ubiquinone oxidoreductase, Na(+)-translocating, E subunit K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D CH53_2792 nqrF; ubiquinone oxidoreductase, Na(+)-translocating, F subunit K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D CH53_2022 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D CH53_3529 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] D CH53_2231 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D CH53_970 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D CH53_3364 diol dehydratase reactivase alpha subunit K27264 pduG; propanediol dehydratase-reactivating factor large subunit D CH53_3363 dehydratase medium subunit K27265 pduH; propanediol dehydratase-reactivating factor small subunit C 99982 Energy metabolism D CH53_1682 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D CH53_60 fdrA; protein fdrA K02381 fdrA; FdrA protein D CH53_641 fdx; ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S D CH53_343 2Fe-2S iron-sulfur cluster binding domain protein K11107 yfaE; ferredoxin D CH53_3931 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D CH53_3930 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D CH53_3936 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D CH53_3276 4Fe-4S dicluster domain protein K05796 hydN; electron transport protein HydN D CH53_1372 4Fe-4S dicluster domain protein K05796 hydN; electron transport protein HydN D CH53_1779 flavodoxin family protein K06205 mioC; MioC protein D CH53_2633 flavodoxin K03840 fldB; flavodoxin II D CH53_3280 4Fe-4S dicluster domain protein K12143 hyfH; hydrogenase-4 component H D CH53_645 nifU; nifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins D CH53_2217 cybC; soluble cytochrome b562 K15536 cybC; soluble cytochrome b562 D CH53_3989 norV; anaerobic nitric oxide reductase flavorubredoxin K12264 norV; anaerobic nitric oxide reductase flavorubredoxin D CH53_558 napD family protein K02570 napD; periplasmic nitrate reductase NapD D CH53_559 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF D CH53_3104 flavodoxin K03839 fldA; flavodoxin I D CH53_555 periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein K02569 napC; cytochrome c-type protein NapC C 99983 Lipid metabolism D CH53_1329 hypothetical protein K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism D CH53_752 nrdI; nrdI protein K03647 nrdI; protein involved in ribonucleotide reduction C 99985 Amino acid metabolism D CH53_523 cysZ; protein CysZ K06203 cysZ; CysZ protein D CH53_2516 ethanolamine utilization, EutH family protein K04023 eutH; ethanolamine transporter D CH53_2514 ethanolamine utilization EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ D CH53_2521 eutK; ethanolamine utilization protein EutK K04025 eutK; ethanolamine utilization protein EutK D CH53_2520 eutL; microcompartment protein EutL K04026 eutL; ethanolamine utilization protein EutL D CH53_2512 eutN; ethanolamine utilization protein eutN K04028 eutN; ethanolamine utilization protein EutN D CH53_3351 eutP; ethanolamine utilization protein, EutP K04029 eutP; ethanolamine utilization protein EutP D CH53_2507 eutP; ethanolamine utilization protein, EutP K04029 eutP; ethanolamine utilization protein EutP D CH53_2508 eutQ; ethanolamine utilization protein eutQ K04030 eutQ; ethanolamine utilization protein EutQ D CH53_3352 pduU; propanediol utilization protein PduU K04031 eutS; ethanolamine utilization protein EutS D CH53_2506 eutS; ethanolamine utilization protein EutS K04031 eutS; ethanolamine utilization protein EutS D CH53_2738 glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein K08234 yaeR; glyoxylase I family protein D CH53_4051 zinc carboxypeptidase family protein K14054 mpaA; murein peptide amidase A D CH53_2587 hypothetical protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D CH53_3914 yciS; inner membrane protein yciS K08992 lapA; lipopolysaccharide assembly protein A D CH53_3915 tetratricopeptide repeat family protein K19804 lapB; lipopolysaccharide assembly protein B D CH53_2560 glycosyltransferase 25 family protein K07270 K07270; glycosyl transferase, family 25 D CH53_1634 bacterial cellulose synthase subunit K20541 bcsB; cellulose synthase operon protein B C 99987 Cofactor metabolism D CH53_1989 hemY family protein K02498 hemY; HemY protein D CH53_2061 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D CH53_2060 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D CH53_2338 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D CH53_1269 hypothetical protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D CH53_1798 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein D CH53_2426 abgT transporter family protein K12942 abgT; aminobenzoyl-glutamate transport protein D CH53_3354 electron transport complex, RnfABCDGE type, C subunit K27271 pduS; cobalamin reductase C 99988 Secondary metabolism D CH53_2363 multicopper oxidase family protein K04753 sufI; suppressor of ftsI D CH53_1742 NADPH-dependent FMN reductase family protein K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D CH53_2288 yqjF; inner membrane protein yqjF K15977 K15977; putative oxidoreductase D CH53_31 doxX family protein K15977 K15977; putative oxidoreductase D CH53_568 phospholipase/Carboxylesterase family protein K06999 K06999; phospholipase/carboxylesterase D CH53_2760 acetyltransferase family protein K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D CH53_611 glucitol operon activator family protein K02466 gutM; glucitol operon activator protein D CH53_2214 hypothetical protein K03623 yhcO; ribonuclease inhibitor D CH53_741 cspG; cold shock-like protein CspG K03704 cspA; cold shock protein D CH53_3525 cspE; cold shock-like protein CspE K03704 cspA; cold shock protein D CH53_2184 cspG; cold shock-like protein CspG K03704 cspA; cold shock protein D CH53_2185 cspG; cold shock-like protein CspG K03704 cspA; cold shock protein D CH53_177 cspD; cold shock domain protein CspD K03704 cspA; cold shock protein D CH53_3054 cspE; cold shock-like protein CspE K03704 cspA; cold shock protein D CH53_4364 cspC; cold shock-like protein CspC K03704 cspA; cold shock protein D CH53_146 cspE; cold shock-like protein CspE K03704 cspA; cold shock protein D CH53_147 cspE; cold shock-like protein CspE K03704 cspA; cold shock protein D CH53_2103 rsd; regulator of sigma D K07740 rsd; regulator of sigma D D CH53_2875 glnK; nitrogen regulatory protein P-II 2 K04752 glnK; nitrogen regulatory protein P-II 2 D CH53_1560 S1 RNA binding domain protein K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D CH53_176 ATP-dependent Clp protease adaptor ClpS family protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D CH53_2860 tig; trigger factor K03545 tig; trigger factor D CH53_2196 ferric reductase like transmembrane component family protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D CH53_1677 fdhE; formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein D CH53_728 hypothetical protein K03187 ureE; urease accessory protein D CH53_727 ureF family protein K03188 ureF; urease accessory protein D CH53_726 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein D CH53_725 ureD urease accessory family protein K03190 ureD; urease accessory protein D CH53_701 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D CH53_3289 hypC; hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC D CH53_2413 hypC; hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC D CH53_2414 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D CH53_2415 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D CH53_2416 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF D CH53_751 nrdH; glutaredoxin-like NrdH family protein K06191 nrdH; glutaredoxin-like protein NrdH D CH53_1949 sigma-54 interaction domain protein K07391 comM; magnesium chelatase family protein D CH53_2669 DSBA-like thioredoxin domain protein K07396 K07396; putative protein-disulfide isomerase D CH53_1518 yhfA; protein yhfA K07397 yhfA; putative redox protein D CH53_1567 nfuA; fe/S biogenesis protein nfuA K07400 nfuA; Fe/S biogenesis protein NfuA D CH53_1431 putative chromosome segregation ATPase K15367 sseA; secretion system chaperone SseA D CH53_1432 putative type III secretion apparatus K18984 ssaE; secretion system chaperone SsaE D CH53_1429 type III secretion low calcium response chaperone LcrH/SycD K15368 sscA; secretion system chaperone SscA C 99976 Replication and repair D CH53_2879 methylated-DNA--[]-cysteine S-methyltransferase family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D CH53_2709 hypothetical protein K01146 xni; protein Xni D CH53_4325 HNH endonuclease family protein K07454 K07454; putative restriction endonuclease D CH53_1857 DNA repair RadC family protein K03630 radC; DNA repair protein RadC D CH53_2977 DNA repair RadC family protein K03630 radC; DNA repair protein RadC D CH53_2058 rmuC family protein K09760 rmuC; DNA recombination protein RmuC D CH53_181 AAA domain protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D CH53_456 AAA domain protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D CH53_2276 hypothetical protein K07460 yraN; putative endonuclease D CH53_1268 GIY-YIG catalytic domain protein K07461 K07461; putative endonuclease D CH53_1453 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein D CH53_4019 gyrI-like small molecule binding domain protein K07470 sbmC; DNA gyrase inhibitor D CH53_165 rarA; replication-associated recombination protein A K07478 ycaJ; putative ATPase D CH53_1451 topoisomerase DNA binding C4 zinc finger family protein K07479 yrdD; putative DNA topoisomerase D CH53_1844 zinc-binding domain of primase-helicase family protein K06919 K06919; putative DNA primase/helicase D CH53_2531 transposase family protein K07483 K07483; transposase D CH53_4310 transposase IS200 like family protein K07491 rayT; REP-associated tyrosine transposase D CH53_2568 integrase core domain protein K07497 K07497; putative transposase D CH53_3115 integrase core domain protein K07498 K07498; putative transposase D CH53_1185 integrase core domain protein K07498 K07498; putative transposase D CH53_3576 phage integrase family protein K14059 int; integrase C 99979 Viral proteins C 99998 Others D CH53_4061 pspA; phage shock protein A K03969 pspA; phage shock protein A D CH53_4058 phage shock PspD family protein K03971 pspD; phage shock protein D D CH53_2901 DNA-binding protein, YbaB/EbfC family K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D CH53_1984 putative transport protein YifK K03293 TC.AAT; amino acid transporter, AAT family D CH53_3803 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D CH53_4073 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D CH53_33 amino acid/peptide transporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D CH53_2824 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D CH53_2137 sodium Bile acid symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family D CH53_1832 na+ dependent nucleoside transporter family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family D CH53_1119 nucleoside transporter, NupC family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family D CH53_2183 transporter, divalent anion:Na+ symporter family protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family D CH53_209 AspT/YidE/YbjL antiporter duplication domain protein K07085 K07085; putative transport protein D CH53_1707 AspT/YidE/YbjL antiporter duplication domain protein K07085 K07085; putative transport protein C 99978 Cell growth D CH53_3888 ispZ; intracellular septation protein A K06190 ispZ; intracellular septation protein D CH53_2019 dcrB; protein dcrB K27311 dcrB; inner membrane lipoprotein DcrB D CH53_1319 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D CH53_3837 spoVR like family protein K06415 spoVR; stage V sporulation protein R D CH53_1871 peptidase M23 family protein K22719 envC; murein hydrolase activator C 99993 Cell motility D CH53_4421 hypothetical protein K07337 K07337; penicillin-binding protein activator D CH53_113 hypothetical protein K07343 tfoX; DNA transformation protein and related proteins D CH53_3511 hypothetical protein K15540 ecpD; chaperone protein EcpD D CH53_2545 hypothetical protein K15540 ecpD; chaperone protein EcpD D CH53_1629 hypothetical protein K15540 ecpD; chaperone protein EcpD D CH53_96 hypothetical protein K15540 ecpD; chaperone protein EcpD D CH53_2712 syd; protein syd K15723 syd; SecY interacting protein Syd C 99995 Signaling proteins D CH53_998 ampE; protein AmpE K03807 ampE; AmpE protein D CH53_4276 proQ; proP effector K03607 proQ; ProP effector D CH53_1607 uspA; universal stress protein A K06149 uspA; universal stress protein A D CH53_3531 universal stress family protein K14064 uspC; universal stress protein C D CH53_4024 uspE; universal stress protein E K14055 uspE; universal stress protein E D CH53_4299 hypothetical protein K14061 uspF; universal stress protein F D CH53_2056 carbon starvation CstA family protein K06200 cstA; carbon starvation protein D CH53_3926 carbon starvation CstA family protein K06200 cstA; carbon starvation protein D CH53_1810 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein D CH53_3081 ybeZ; phoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D CH53_3722 phoH-like family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D CH53_3844 hypothetical protein K07180 prkA; serine protein kinase D CH53_2333 bacterial SH3 domain protein K07184 ygiM; SH3 domain protein D CH53_1113 bacterial virulence factor hemolysin family protein K07186 smp; membrane protein D CH53_2849 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D CH53_166 lolA; outer membrane lipocarrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D CH53_3762 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB D CH53_442 putative phospholipid-binding lipoprotein mlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA D CH53_1973 wzzE; lipopolysaccharide biosynthesis protein wzzE K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE D CH53_4083 slyB; outer membrane lipoprotein slyB K06077 slyB; outer membrane lipoprotein SlyB D CH53_2404 slyB; outer membrane lipoprotein slyB K06077 slyB; outer membrane lipoprotein SlyB D CH53_2186 slyB; outer membrane lipoprotein slyB K06077 slyB; outer membrane lipoprotein SlyB D CH53_2729 outer membrane family protein K06142 hlpA; outer membrane protein D CH53_925 lysM domain protein K06194 nlpD; lipoprotein NlpD D CH53_3754 lysM domain protein K12943 ygeR; lipoprotein YgeR D CH53_1274 nlpI; lipoprotein nlpI K05803 nlpI; lipoprotein NlpI D CH53_536 capsule polysaccharide biosynthesis family protein K07265 kpsS; capsular polysaccharide export protein D CH53_537 capsule polysaccharide biosynthesis family protein K07266 kpsC; capsular polysaccharide export protein D CH53_3892 oprF membrane domain protein K07275 ompW; outer membrane protein D CH53_804 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein D CH53_3818 outer membrane lipo, Slp family protein K07285 slp; outer membrane lipoprotein D CH53_2858 hypothetical protein K07286 yajG; uncharacterized lipoprotein D CH53_3304 asmA family protein K07289 asmA; AsmA protein D CH53_1618 asmA family protein K07290 yhjG; AsmA family protein D CH53_2923 ybbJ; inner membrane protein ybbJ K07340 ybbJ; inner membrane protein D CH53_3260 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D CH53_22 hypothetical protein K11744 tqsA; AI-2 transport protein TqsA D CH53_3920 glycine zipper 2TM domain protein K04062 osmB; osmotically inducible lipoprotein OsmB D CH53_2632 inner membrane CreD family protein K06143 creD; inner membrane protein D CH53_447 ccmE; cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D CH53_444 cytochrome C biogenesis family protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D CH53_630 helix-turn-helix family protein K15539 rodZ; cytoskeleton protein RodZ D CH53_2209 hypothetical protein K21695 aaeX; protein AaeX D CH53_2315 hdeD; protein hdeD K21908 hdeD; membrane protein HdeD D CH53_3368 pduB; microcompartment protein PduB K27263 pduB; bacterial microcompartment shell protein D CH53_3362 pduA; propanediol utilization protein PduA K27266 pduJ; bacterial microcompartment shell protein D CH53_3361 BMC domain protein K27267 pduK; bacterial microcompartment shell protein D CH53_3359 pduM; microcompartment protein PduM K27268 pduM; bacterial microcompartment assembly protein D CH53_3358 ethanolamine utilization EutN/carboxysome family protein K27269 pduN; bacterial microcompartment shell vertex protein D CH53_3353 microcompartments protein K27272 pduT; bacterial microcompartment shell protein C 99994 Others D CH53_1752 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D CH53_1491 bfd; bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin D CH53_38 periplasmic glucan biosynthesis, MdoG family protein K03670 mdoG; periplasmic glucans biosynthesis protein D CH53_1369 cutA; divalent-cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein D CH53_3790 cutC family protein K06201 cutC; copper homeostasis protein D CH53_1258 phnK; phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein D CH53_1059 hypothetical protein K06195 apaG; ApaG protein D CH53_1994 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY D CH53_1397 hemS; hemin transport protein hemS K07225 hmuS; putative hemin transport protein D CH53_4124 hemS; hemin transport protein hemS K07225 hmuS; putative hemin transport protein D CH53_2892 ychN; protein ychN K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur B B 09194 Poorly characterized C 99996 General function prediction only D CH53_407 colicin V production family protein K03558 cvpA; membrane protein required for colicin V production D CH53_122 mce related family protein K06192 pqiB; paraquat-inducible protein B D CH53_3786 oxidoreductase, NAD-binding Rossmann fold family protein K03810 mviM; virulence factor D CH53_2758 hypothetical protein K05811 yfiM; putative lipoprotein D CH53_1123 BON domain protein K04065 osmY; hyperosmotically inducible periplasmic protein D CH53_3775 PHP domain protein K04477 ycdX; putative hydrolase D CH53_693 grcA; autonomous glycyl radical cofactor GrcA K06866 grcA; autonomous glycyl radical cofactor D CH53_3866 patatin-like phospholipase family protein K07001 K07001; NTE family protein D CH53_960 erpA; iron-sulfur cluster insertion protein erpA K15724 erpA; iron-sulfur cluster insertion protein D CH53_4116 iron-sulfur cluster assembly accessory family protein K05997 sufA; Fe-S cluster assembly protein SufA D CH53_4115 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D CH53_4113 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D CH53_3747 hypothetical protein K07038 K07038; inner membrane protein D CH53_4268 ydjM; inner membrane protein ydjM K07038 K07038; inner membrane protein D CH53_659 hypothetical protein K07048 PTER; phosphotriesterase-related protein D CH53_1616 yhjD; inner membrane protein YhjD K07058 K07058; membrane protein D CH53_1812 yihY; YihY family inner membrane domain protein K07058 K07058; membrane protein D CH53_1366 hypothetical protein K07113 fxsA; UPF0716 protein FxsA D CH53_2703 csdE; cysteine desulfurase, sulfur acceptor subunit CsdE K02426 sufE; cysteine desulfuration protein SufE D CH53_4111 sufE; cysteine desulfuration protein sufE K02426 sufE; cysteine desulfuration protein SufE D CH53_23 rhodanese-like domain protein K07146 K07146; UPF0176 protein D CH53_4403 hflD; high frequency lysogenization protein hflD K07153 hflD; high frequency lysogenization protein D CH53_1501 slyX family protein K03745 slyX; SlyX protein D CH53_1452 hypothetical protein K03747 smg; Smg protein D CH53_1089 creA family protein K05805 creA; CreA protein D CH53_2596 peptidase MA superfamily protein K02742 sprT; SprT protein D CH53_408 sporulation related domain protein K03749 dedD; DedD protein D CH53_1541 sporulation related domain protein K03112 damX; DamX protein D CH53_3291 hypothetical protein K03748 sanA; SanA protein D CH53_411 hypothetical protein K03975 dedA; membrane-associated protein D CH53_4278 yebS; inner membrane protein yebS K03808 pqiA; paraquat-inducible protein A D CH53_123 integral membrane, PqiA family protein K03808 pqiA; paraquat-inducible protein A D CH53_359 hypothetical protein K05594 elaB; ElaB protein D CH53_4056 hypothetical protein K08990 ycjF; putative membrane protein D CH53_2026 hypothetical protein K08993 yhhL; putative membrane protein D CH53_3865 SEC-C motif family protein K09858 K09858; SEC-C motif domain protein D CH53_2878 hypothetical protein K09914 K09914; putative lipoprotein D CH53_2146 maltose operon periplasmic family protein K05775 malM; maltose operon periplasmic protein D CH53_2140 psiE; protein psiE K13256 psiE; protein PsiE D CH53_453 phnA Zinc-Ribbon family protein K06193 phnA; protein PhnA C 99997 Function unknown D CH53_691 ankyrin repeat family protein K06867 K06867; uncharacterized protein D CH53_3258 radical SAM additional 4Fe4S-binding SPASM domain protein K06871 K06871; uncharacterized protein D CH53_1327 dienelactone hydrolase family protein K06889 K06889; uncharacterized protein D CH53_3026 X-Pro dipeptidyl-peptidase family protein K06889 K06889; uncharacterized protein D CH53_3197 inhibitor of apoptosis-promoting Bax1 family protein K06890 K06890; uncharacterized protein D CH53_2959 snoaL-like domain protein K06893 K06893; uncharacterized protein D CH53_4057 hypothetical protein K06918 K06918; uncharacterized protein D CH53_107 coA binding domain protein K06929 K06929; uncharacterized protein D CH53_4089 hypothetical protein K06938 K06938; uncharacterized protein D CH53_3891 putative zinc-/iron-chelating domain protein K06940 K06940; uncharacterized protein D CH53_248 putative zinc-/iron-chelating domain protein K06940 K06940; uncharacterized protein D CH53_2489 FAD dependent oxidoreductase family protein K06954 K06954; uncharacterized protein D CH53_4269 dicarboxylate symporter family protein K06956 K06956; uncharacterized protein D CH53_3991 zinc carboxypeptidase family protein K06987 K06987; uncharacterized protein D CH53_4074 glyoxalase-like domain protein K06996 K06996; uncharacterized protein D CH53_2347 hypothetical protein K07000 K07000; uncharacterized protein D CH53_4418 hypothetical protein K07000 K07000; uncharacterized protein D CH53_3077 pyridoxamine 5'-phosphate oxidase, FMN-binding family protein K07006 K07006; uncharacterized protein D CH53_271 type I phosphodiesterase / nucleotide pyrophosphatase family protein K07014 K07014; uncharacterized protein D CH53_1515 alpha/beta hydrolase family protein K07019 K07019; uncharacterized protein D CH53_1078 yaaH; inner membrane protein yaaH K07034 K07034; uncharacterized protein D CH53_573 neutral zinc metallopeptidase family protein K07054 K07054; uncharacterized protein D CH53_1503 hypothetical protein K07070 K07070; uncharacterized protein D CH53_400 rmlD substrate binding domain protein K07071 K07071; uncharacterized protein D CH53_2574 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein D CH53_432 hypothetical protein K07090 K07090; uncharacterized protein D CH53_398 yfcE; phosphodiesterase yfcE K07095 K07095; uncharacterized protein D CH53_1316 hypothetical protein K07109 K07109; uncharacterized protein D CH53_2598 sulfur transport family protein K07112 K07112; uncharacterized protein D CH53_2599 sulfur transport family protein K07112 K07112; uncharacterized protein D CH53_2277 lppC lipofamily protein K07121 K07121; uncharacterized protein D CH53_3030 short chain dehydrogenase family protein K07124 K07124; uncharacterized protein D CH53_3793 yecN; inner membrane protein yecN K07136 K07136; uncharacterized protein D CH53_2270 radical SAM superfamily protein K07139 K07139; uncharacterized protein D CH53_126 MOSC domain protein K07140 K07140; MOSC domain-containing protein D CH53_3268 hypothetical protein K07148 K07148; uncharacterized protein D CH53_4232 hypothetical protein K07150 K07150; uncharacterized protein D CH53_1734 putative membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein D CH53_2584 hypothetical protein K09131 K09131; uncharacterized protein D CH53_3060 hypothetical protein K09158 K09158; uncharacterized protein D CH53_3828 putative zinc-/iron-chelating domain protein K09160 K09160; uncharacterized protein D CH53_389 hypothetical protein K09161 K09161; uncharacterized protein D CH53_2490 hypothetical protein K09701 K09701; uncharacterized protein D CH53_550 hypothetical protein K09768 K09768; uncharacterized protein D CH53_3885 yciI; protein yciI K09780 K09780; uncharacterized protein D CH53_3843 hypothetical protein K09786 K09786; uncharacterized protein D CH53_2896 ybaN; inner membrane protein ybaN K09790 K09790; uncharacterized protein D CH53_145 trm112p-like family protein K09791 K09791; uncharacterized protein D CH53_1870 divergent polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein D CH53_699 rnfH Ubiquitin family protein K09801 K09801; uncharacterized protein D CH53_3342 hypothetical protein K09802 K09802; uncharacterized protein D CH53_2610 hypothetical protein K09807 K09807; uncharacterized protein D CH53_180 hypothetical protein K09824 virK; uncharacterized protein D CH53_2794 hypothetical protein K05952 K05952; uncharacterized protein D CH53_121 hypothetical protein K09857 K09857; uncharacterized protein D CH53_1083 hypothetical protein K09861 K09861; uncharacterized protein D CH53_1007 hypothetical protein K09862 K09862; uncharacterized protein D CH53_2107 hypothetical protein K09891 K09891; uncharacterized protein D CH53_1805 der GTPase activator family protein K09894 K09894; uncharacterized protein D CH53_2616 yecA family protein K09895 K09895; uncharacterized protein D CH53_1800 yihD; protein yihD K09896 K09896; uncharacterized protein D CH53_1948 hypothetical protein K09897 K09897; uncharacterized protein D CH53_1516 hypothetical protein K09898 K09898; uncharacterized protein D CH53_390 hypothetical protein K09899 K09899; uncharacterized protein D CH53_3880 hypothetical protein K09901 K09901; uncharacterized protein D CH53_3825 hypothetical protein K09902 K09902; uncharacterized protein D CH53_270 hypothetical protein K09904 K09904; uncharacterized protein D CH53_3789 yecM; protein yecM K09907 K09907; uncharacterized protein D CH53_2261 hypothetical protein K09908 K09908; uncharacterized protein D CH53_108 hypothetical protein K09909 K09909; uncharacterized protein D CH53_989 hypothetical protein K09910 K09910; uncharacterized protein D CH53_116 organizer of macrodomain of Terminus of chromosome family protein K09911 K09911; uncharacterized protein D CH53_3008 hypothetical protein K09912 K09912; uncharacterized protein D CH53_3785 hypothetical protein K09915 K09915; uncharacterized protein D CH53_3849 hypothetical protein K09916 K09916; uncharacterized protein D CH53_4348 hypothetical protein K09917 K09917; uncharacterized protein D CH53_4345 yebG family protein K09918 K09918; uncharacterized protein D CH53_2345 hypothetical protein K09920 K09920; uncharacterized protein D CH53_1997 hypothetical protein K09921 K09921; uncharacterized protein D CH53_2579 hypothetical protein K09923 K09923; uncharacterized protein D CH53_1334 hypothetical protein K09937 K09937; uncharacterized protein D CH53_604 hypothetical protein K09946 K09946; uncharacterized protein D CH53_520 hypothetical protein K09954 K09954; uncharacterized protein D CH53_518 hypothetical protein K09962 K09962; uncharacterized protein D CH53_2920 utp13 specific WD40 associated domain protein K09973 K09973; uncharacterized protein D CH53_3743 hutD family protein K09975 K09975; uncharacterized protein D CH53_4039 hypothetical protein K09978 K09978; uncharacterized protein D CH53_1264 hypothetical protein K09979 K09979; uncharacterized protein D CH53_3884 transcription factor zinc-finger family protein K09981 K09981; uncharacterized protein D CH53_3044 hypothetical protein K09982 K09982; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 9, 2024