+D GENES KO
#
KEGG Orthology (KO) - Yersinia pseudotuberculosis PB1/+ (serotype 1B)
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ypb00010]
D YPTS_2799 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPTS_3835 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPTS_0077 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPTS_0486 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPTS_0089 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPTS_4002 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPTS_3327 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPTS_0085 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPTS_2146 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPTS_3328 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPTS_1244 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPTS_0620 Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPTS_0062 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPTS_0788 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPTS_2380 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPTS_2107 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPTS_2393 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPTS_0743 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPTS_0744 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_2329 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPTS_1627 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPTS_2171 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPTS_2271 Aldehyde Dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D YPTS_0332 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPTS_1246 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPTS_0027 HAD-superfamily hydrolase, subfamily IA, variant 3 K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D YPTS_3039 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPTS_2145 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D YPTS_3958 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPTS_3929 glycoside hydrolase family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPTS_1380 glycoside hydrolase family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPTS_2817 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPTS_2551 PTS system, glucose-specific IIBC subunit K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:ypb00020]
D YPTS_1219 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D YPTS_2213 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPTS_0746 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPTS_2510 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPTS_1224 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPTS_1225 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_1227 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPTS_1226 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPTS_1222 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPTS_1223 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPTS_1220 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D YPTS_1221 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPTS_0439 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPTS_0438 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPTS_0437 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPTS_0436 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPTS_0831 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPTS_2257 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPTS_0490 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPTS_3958 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPTS_0743 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPTS_0744 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPTS_2329 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:ypb00030]
D YPTS_3835 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPTS_2109 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPTS_1259 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D YPTS_1663 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPTS_3941 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPTS_3330 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPTS_0851 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPTS_0852 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPTS_0630 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D YPTS_3322 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YPTS_0813 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPTS_1451 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPTS_0603 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPTS_3797 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPTS_4163 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPTS_3798 PfkB domain protein K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPTS_0605 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPTS_3039 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPTS_0539 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D YPTS_2058 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPTS_2660 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D YPTS_2111 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPTS_4127 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPTS_2667 carbohydrate kinase, thermoresistant glucokinase family K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPTS_3995 carbohydrate kinase, thermoresistant glucokinase family K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPTS_4045 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D YPTS_4002 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPTS_3327 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPTS_0486 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPTS_0089 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPTS_0077 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:ypb00040]
D YPTS_0591 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPTS_4050 periplasmic pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2]
D YPTS_2432 periplasmic pectate lyase K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9]
D YPTS_2442 WD40 domain protein beta Propeller K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6]
D YPTS_2429 Cupin 2 conserved barrel domain protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D YPTS_2430 5-keto 4-deoxyuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D YPTS_2431 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D YPTS_3204 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D YPTS_3663 Glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D YPTS_3662 Mannitol dehydrogenase domain protein K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D YPTS_3661 D-galactarate dehydratase/Altronate hydrolase domain protein K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D YPTS_1407 mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D YPTS_1406 Mannitol dehydrogenase domain protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D YPTS_2166 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPTS_1661 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_1662 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_0832 carbohydrate kinase FGGY K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D YPTS_0833 hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPTS_0839 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPTS_2222 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPTS_3941 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPTS_2242 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D YPTS_2243 L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D YPTS_1416 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPTS_4109 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPTS_4108 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPTS_0408 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPTS_0406 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPTS_2320 Mannitol dehydrogenase domain protein K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPTS_4003 protein of unknown function DUF1498 K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
D YPTS_3782 FGGY-family pentulose kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47]
C 00051 Fructose and mannose metabolism [PATH:ypb00051]
D YPTS_0955 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPTS_2256 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPTS_2614 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPTS_1690 Mandelate racemase/muconate lactonizing protein K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D YPTS_1688 short-chain dehydrogenase/reductase SDR K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D YPTS_1689 fumarylacetoacetate (FAA) hydrolase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D YPTS_0407 L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D YPTS_0408 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPTS_0406 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPTS_0077 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPTS_0486 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPTS_0089 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPTS_4139 Mannitol dehydrogenase domain protein K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D YPTS_1425 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPTS_4108 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPTS_2320 Mannitol dehydrogenase domain protein K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPTS_4002 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPTS_3327 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPTS_0085 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPTS_1054 NAD-dependent epimerase/dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D YPTS_0813 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPTS_1426 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPTS_1757 PTS system, mannose/fructose/sorbose family, IIB subunit K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPTS_1756 PTS system, mannose/fructose/sorbose family, IIC subunit K02795 manY; mannose PTS system EIIC component
D YPTS_1755 PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component
D YPTS_4138 PTS system, mannitol-specific IIC subunit K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPTS_2688 HAD-superfamily hydrolase, subfamily IA, variant 3 K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D YPTS_2428 HAD-superfamily hydrolase, subfamily IA, variant 3 K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:ypb00052]
D YPTS_1246 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPTS_1247 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPTS_1248 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPTS_1249 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPTS_1661 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_1662 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_3039 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPTS_2799 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPTS_2494 glycoside hydrolase family 2 TIM barrel K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPTS_3219 Glycoside hydrolase family 42 domain protein K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D YPTS_1727 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D YPTS_0077 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPTS_3210 class II aldolase, tagatose bisphosphate family K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D YPTS_3197 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D YPTS_3215 glycoside hydrolase family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPTS_0963 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPTS_3202 PTS system fructose subfamily IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPTS_3199 PTS system, mannose/fructose/sorbose family, IIB subunit K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPTS_3200 phosphotransferase system PTS sorbose-specific IIC subunit K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPTS_3201 PTS system mannose/fructose/sorbose family IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPTS_3203 N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPTS_3198 sugar isomerase, AgaS family K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:ypb00053]
D YPTS_2166 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPTS_2694 putative PTS IIA-like nitrogen-regulatory protein PtsN K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPTS_2695 phosphotransferase system lactose/cellobiose-specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPTS_2696 putative sugar-specific permease SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component
D YPTS_0833 hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPTS_0839 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPTS_2222 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPTS_0832 carbohydrate kinase FGGY K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
C 00500 Starch and sucrose metabolism [PATH:ypb00500]
D YPTS_3215 glycoside hydrolase family 31 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPTS_0963 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPTS_1661 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_1662 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_3621 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPTS_1105 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPTS_3045 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPTS_3047 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPTS_3046 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D YPTS_3929 glycoside hydrolase family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPTS_1380 glycoside hydrolase family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPTS_1042 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPTS_3982 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D YPTS_3981 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D YPTS_3984 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPTS_3980 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D YPTS_3971 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D YPTS_3983 glycogen debranching enzyme GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D YPTS_4126 alpha amylase catalytic region K01176 AMY; alpha-amylase [EC:3.2.1.1]
D YPTS_3970 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D YPTS_2817 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPTS_3722 PTS system, trehalose-specific IIBC subunit K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPTS_3723 alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D YPTS_3039 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPTS_2799 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPTS_3835 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPTS_0955 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ypb00520]
D YPTS_3503 glycoside hydrolase family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D YPTS_2533 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPTS_1181 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D YPTS_2817 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPTS_1178 PTS system, N-acetylglucosamine-specific IIBC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPTS_2523 ROK family protein K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D YPTS_1176 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPTS_1177 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D YPTS_0955 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPTS_4184 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPTS_0506 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D YPTS_4182 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPTS_2994 glucokinase regulatory-like protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D YPTS_3699 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPTS_0290 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPTS_2839 ROK family protein K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D YPTS_2842 putative N-acetylmannosamine-6-phosphate epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D YPTS_2843 dihydrodipicolinate synthetase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D YPTS_0182 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPTS_0183 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPTS_2403 NAD-dependent epimerase/dehydratase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPTS_2405 DegT/DnrJ/EryC1/StrS aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPTS_2404 glycosyl transferase family 2 K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPTS_2402 polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPTS_2551 PTS system, glucose-specific IIBC subunit K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPTS_2799 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPTS_3039 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPTS_1661 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_1662 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_2166 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPTS_1247 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPTS_1248 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPTS_1249 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPTS_1757 PTS system, mannose/fructose/sorbose family, IIB subunit K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPTS_1756 PTS system, mannose/fructose/sorbose family, IIC subunit K02795 manY; mannose PTS system EIIC component
D YPTS_1755 PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component
D YPTS_3835 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPTS_2256 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPTS_2614 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPTS_1054 NAD-dependent epimerase/dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D YPTS_1042 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPTS_1043 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPTS_1044 DegT/DnrJ/EryC1/StrS aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPTS_1041 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPTS_1045 NAD-dependent epimerase/dehydratase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPTS_3982 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:ypb00620]
D YPTS_0332 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPTS_2329 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPTS_0743 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPTS_0744 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_1509 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPTS_2171 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPTS_1627 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPTS_2691 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPTS_2692 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPTS_2380 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPTS_2107 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPTS_3107 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPTS_3758 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPTS_3759 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPTS_2711 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPTS_1570 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D YPTS_2271 Aldehyde Dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D YPTS_1692 FMN-dependent alpha-hydroxy acid dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D YPTS_1483 thiamine pyrophosphate protein TPP binding domain protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D YPTS_2324 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D YPTS_1306 D-lactate dehydrogenase membrane binding K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D YPTS_2368 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D YPTS_3085 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPTS_1535 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPTS_4127 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPTS_1636 malic protein NAD-binding K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPTS_2859 phosphate acetyl/butaryl transferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D YPTS_0490 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPTS_0831 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPTS_2257 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPTS_0439 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPTS_0438 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPTS_0437 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPTS_0436 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPTS_0113 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPTS_3958 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPTS_2393 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPTS_3843 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D YPTS_0698 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ypb00630]
D YPTS_3842 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D YPTS_0332 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPTS_3843 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D YPTS_0490 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPTS_1219 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D YPTS_2213 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPTS_0746 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPTS_1334 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6]
D YPTS_4127 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPTS_3940 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YPTS_0025 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPTS_2978 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPTS_3311 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPTS_3313 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_3312 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D YPTS_4035 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPTS_2627 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPTS_2111 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPTS_4149 molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPTS_4150 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPTS_4151 formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPTS_4152 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D YPTS_2163 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPTS_2020 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:ypb00640]
D YPTS_0332 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPTS_2691 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPTS_2692 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_1509 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPTS_3754 quinone oxidoreductase, YhdH/YhfP family K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPTS_3107 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPTS_3758 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPTS_3759 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPTS_2711 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPTS_2916 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPTS_1226 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPTS_1227 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPTS_1126 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPTS_0746 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPTS_1565 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D YPTS_3527 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:ypb00650]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPTS_4200 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPTS_2171 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPTS_2627 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPTS_1222 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPTS_1223 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPTS_1220 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D YPTS_1221 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPTS_0439 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPTS_0438 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPTS_0437 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPTS_0436 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPTS_2916 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPTS_1415 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPTS_3731 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPTS_1509 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPTS_2329 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPTS_1582 Hydroxymethylglutaryl-coenzyme A synthase domain protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPTS_0702 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_0143 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_2294 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_0703 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPTS_2295 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPTS_0144 acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:ypb00660]
D YPTS_0702 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_0143 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_2294 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_0703 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPTS_2295 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPTS_0144 acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPTS_1973 acetyl-CoA hydrolase/transferase K18288 ict-Y; itaconate CoA-transferase [EC:2.8.3.-]
D YPTS_1226 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPTS_1227 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPTS_1974 MaoC domain protein dehydratase K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56]
D YPTS_1975 HpcH/HpaI aldolase K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25]
D YPTS_0082 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPTS_0696 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPTS_0695 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPTS_0697 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ypb00562]
D YPTS_2970 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPTS_2503 histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPTS_1129 oxidoreductase domain protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPTS_1135 Xylose isomerase domain protein TIM barrel K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D YPTS_1127 thiamine pyrophosphate protein domain protein TPP-binding K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D YPTS_1136 Myo-inositol catabolism IolB domain protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D YPTS_1134 PfkB domain protein K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D YPTS_1126 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPTS_0085 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ypb00190]
D YPTS_2682 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D YPTS_2681 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D YPTS_2680 NADH dehydrogenase I, D subunit K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D YPTS_2679 NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D YPTS_2678 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D YPTS_2677 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D YPTS_2676 respiratory-chain NADH dehydrogenase subunit 1 K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D YPTS_2675 NADH-quinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D YPTS_2674 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D YPTS_2673 NADH-ubiquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D YPTS_2672 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D YPTS_2671 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D YPTS_2670 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D YPTS_2531 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D YPTS_1222 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPTS_1223 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPTS_1220 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D YPTS_1221 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPTS_0439 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPTS_0438 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPTS_0437 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPTS_0436 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPTS_0989 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPTS_0990 cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D YPTS_0991 cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D YPTS_0992 cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D YPTS_0993 ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D YPTS_1228 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPTS_1229 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPTS_1230 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D YPTS_4178 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPTS_4180 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPTS_4179 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPTS_4177 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPTS_4181 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPTS_4174 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPTS_4176 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPTS_4175 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YPTS_0485 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D YPTS_2907 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:ypb00680]
D YPTS_1627 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPTS_1626 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D YPTS_4149 molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPTS_4150 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPTS_4151 formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPTS_4152 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D YPTS_0424 formate dehydrogenase, alpha subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D YPTS_2978 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPTS_0788 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPTS_0113 phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPTS_0490 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPTS_4002 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPTS_3327 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPTS_0486 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPTS_0089 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPTS_0077 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPTS_2597 formaldehyde-activating enzyme K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147]
D YPTS_2691 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPTS_2692 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPTS_0332 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPTS_2393 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPTS_1244 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPTS_0620 Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPTS_0062 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPTS_3321 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPTS_1412 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPTS_1515 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPTS_0608 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ypb00910]
D YPTS_2864 periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D YPTS_2863 Nitrate reductase cytochrome c-type subunit (NapB) K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D YPTS_3935 nitrite reductase (NAD(P)H), large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D YPTS_3936 nitrite reductase (NAD(P)H), small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D YPTS_1485 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D YPTS_4027 Glu/Leu/Phe/Val dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPTS_0025 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPTS_3687 ferredoxin-dependent glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPTS_3688 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPTS_0755 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D YPTS_3190 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ypb00920]
D YPTS_2835 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPTS_0078 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPTS_2834 sulfate ABC transporter, inner membrane subunit K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPTS_2833 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPTS_2832 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPTS_3914 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D YPTS_3912 binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein
D YPTS_3913 ABC transporter related K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPTS_3911 Taurine catabolism dioxygenase TauD/TfdA K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPTS_3795 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPTS_3793 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D YPTS_3792 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPTS_3794 Luciferase-like monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D YPTS_3796 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D YPTS_0800 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPTS_0799 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPTS_0801 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPTS_0477 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPTS_0794 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D YPTS_0792 sulfite reductase (NADPH) flavoprotein, alpha chain K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D YPTS_0793 sulfite reductase (NADPH) hemoprotein, beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D YPTS_1323 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPTS_3973 Rhodanese domain protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D YPTS_0067 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPTS_1010 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPTS_2814 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPTS_3844 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPTS_0108 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPTS_0840 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPTS_2787 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPTS_2788 dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPTS_0841 dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPTS_0842 DMSO reductase anchor subunit (DmsC) K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPTS_2789 putative dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ypb00061]
D YPTS_3107 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPTS_3758 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPTS_3759 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPTS_2711 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPTS_2558 acyl carrier protein K02078 acpP; acyl carrier protein
D YPTS_1588 putative acyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPTS_2560 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPTS_2561 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPTS_2026 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPTS_2721 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPTS_1580 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPTS_1554 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPTS_2557 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPTS_2559 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPTS_1581 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPTS_1556 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPTS_1579 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPTS_3112 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPTS_4200 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPTS_2118 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPTS_0701 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:ypb00071]
D YPTS_2734 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPTS_0282 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPTS_0925 Protein of unknown function DUF1974 K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D YPTS_2118 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPTS_0701 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPTS_3164 AMP-dependent synthetase and ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YPTS_1627 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPTS_2171 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ypb00561]
D YPTS_4035 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPTS_0816 Dak kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D YPTS_0817 dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D YPTS_0090 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPTS_0853 carbohydrate kinase FGGY K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPTS_0391 phospholipid/glycerol acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPTS_2562 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPTS_3558 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPTS_3532 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPTS_0392 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPTS_1727 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:ypb00564]
D YPTS_0066 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D YPTS_3979 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D YPTS_0224 glycerol-3-phosphate dehydrogenase, anaerobic, A subunit K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D YPTS_0225 glycerol-3-phosphate dehydrogenase, anaerobic, B subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D YPTS_0226 glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D YPTS_0391 phospholipid/glycerol acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPTS_3558 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPTS_3532 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPTS_0392 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPTS_0216 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YPTS_0220 alpha/beta hydrolase fold protein K01048 pldB; lysophospholipase [EC:3.1.1.5]
D YPTS_0258 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPTS_0223 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPTS_3164 AMP-dependent synthetase and ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YPTS_4041 CDP-diacylglycerol pyrophosphatase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D YPTS_1093 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPTS_3117 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPTS_0892 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPTS_0442 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D YPTS_1869 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D YPTS_0979 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D YPTS_2215 phosphoesterase PA-phosphatase related K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D YPTS_2993 HAD superfamily (subfamily IF) hydrolase, YfhB K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D YPTS_2180 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:ypb00565]
D YPTS_0216 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:ypb00600]
D YPTS_2031 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPTS_2494 glycoside hydrolase family 2 TIM barrel K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPTS_1727 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D YPTS_1181 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D YPTS_0216 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D YPTS_0216 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:ypb00592]
D YPTS_0216 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YPTS_2734 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPTS_0282 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:ypb01040]
D YPTS_1076 lipolytic protein G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPTS_1017 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPTS_2189 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ypb00230]
D YPTS_3540 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPTS_3952 NUDIX hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D YPTS_0605 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPTS_3039 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPTS_2058 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPTS_2707 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPTS_0320 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D YPTS_2901 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPTS_1775 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D YPTS_2990 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D YPTS_2900 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D YPTS_1079 phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D YPTS_1080 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D YPTS_2887 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D YPTS_2515 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPTS_0321 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPTS_1034 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPTS_4072 phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPTS_0807 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPTS_1174 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPTS_3955 HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D YPTS_1061 PfkB domain protein K00892 gsk; inosine kinase [EC:2.7.1.73]
D YPTS_1281 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPTS_0606 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPTS_0953 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D YPTS_0886 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPTS_0754 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D YPTS_2941 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPTS_2954 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPTS_0619 protein of unknown function DUF84 K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D YPTS_3351 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D YPTS_0943 phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D YPTS_2940 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPTS_0732 guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D YPTS_0038 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D YPTS_3074 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPTS_1341 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPTS_3075 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPTS_1340 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPTS_0550 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPTS_0781 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D YPTS_2685 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPTS_0036 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPTS_0176 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPTS_2908 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPTS_0785 (p)ppGpp synthetase I, SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D YPTS_0197 putative adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D YPTS_1307 adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D YPTS_3026 cyclic-AMP phosphodiesterase K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]
D YPTS_0459 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPTS_2250 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D YPTS_2289 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D YPTS_3134 conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPTS_0476 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPTS_1039 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPTS_0786 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPTS_3538 Calcineurin phosphoesterase domain protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D YPTS_0654 bis(5'nucleosyl)-tetraphosphatase, ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D YPTS_0801 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPTS_0800 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPTS_0799 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPTS_3080 urate catabolism protein K16842 hpxB; allantoinase [EC:3.5.2.5]
D YPTS_0912 amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPTS_0911 aminotransferase class V K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPTS_3058 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPTS_3059 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPTS_3060 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPTS_0904 amidohydrolase, AtzE family K22601 hpxY; oxamate carbamoyltransferase [EC:2.1.3.5]
C 00240 Pyrimidine metabolism [PATH:ypb00240]
D YPTS_0648 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPTS_0647 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPTS_3717 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPTS_3718 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPTS_2570 dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YPTS_1543 dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D YPTS_0044 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D YPTS_2219 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D YPTS_3121 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D YPTS_2954 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPTS_0786 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPTS_3749 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D YPTS_3657 protein of unknown function DUF45 K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D YPTS_0787 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D YPTS_1517 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D YPTS_2157 NUDIX hydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65]
D YPTS_1646 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D YPTS_0807 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPTS_1174 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPTS_2296 HAD-superfamily hydrolase, subfamily IA, variant 1 K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D YPTS_0266 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D YPTS_0953 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D YPTS_2899 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D YPTS_0476 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPTS_3134 conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPTS_1637 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D YPTS_3933 Amidohydrolase 3 K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPTS_0550 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPTS_1647 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D YPTS_3074 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPTS_1341 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPTS_3075 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPTS_1340 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPTS_2685 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPTS_2554 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D YPTS_0046 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPTS_0604 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D YPTS_2170 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D YPTS_3155 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D YPTS_2269 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D YPTS_2266 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ypb00250]
D YPTS_1536 aminotransferase class I and II K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPTS_3009 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPTS_2150 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPTS_1512 L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPTS_4168 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPTS_1173 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPTS_0913 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D YPTS_2684 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPTS_0428 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D YPTS_1693 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPTS_0118 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPTS_0459 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPTS_2515 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPTS_3717 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPTS_3718 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPTS_2916 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPTS_1415 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPTS_3731 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPTS_3687 ferredoxin-dependent glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPTS_3688 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPTS_4027 Glu/Leu/Phe/Val dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPTS_1854 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPTS_0025 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPTS_0648 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPTS_0647 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPTS_1986 Glutaminase, core K01425 glsA; glutaminase [EC:3.5.1.2]
D YPTS_3355 Glutaminase, core K01425 glsA; glutaminase [EC:3.5.1.2]
D YPTS_4184 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPTS_2707 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ypb00260]
D YPTS_3836 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPTS_0626 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPTS_0109 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPTS_3990 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPTS_0627 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D YPTS_0628 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D YPTS_1482 aromatic amino acid beta-eliminating lyase/threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D YPTS_2978 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPTS_4127 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPTS_4035 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPTS_1244 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPTS_0620 Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPTS_0062 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPTS_3321 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPTS_1412 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPTS_1515 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPTS_0608 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D YPTS_2269 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D YPTS_2266 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D YPTS_0058 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPTS_0059 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D YPTS_3311 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPTS_3313 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_3312 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D YPTS_0892 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPTS_1275 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D YPTS_1276 betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D YPTS_1771 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPTS_0147 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPTS_4118 Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPTS_2720 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPTS_2470 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPTS_2196 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPTS_2197 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPTS_1651 Pyridoxal-dependent decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:ypb00270]
D YPTS_0067 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPTS_1010 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPTS_2814 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPTS_3524 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_0359 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_2276 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_2826 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_3839 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPTS_0264 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPTS_3335 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPTS_0750 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPTS_0751 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPTS_2592 autoinducer synthesis protein K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPTS_3394 autoinducer synthesis protein K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPTS_0780 purine or other phosphorylase family 1 K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D YPTS_0919 5-methylthioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D YPTS_0886 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPTS_0918 translation initiation factor, aIF-2BI family K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D YPTS_0915 methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
D YPTS_0916 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D YPTS_0917 Acireductone dioxygenase ARD K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D YPTS_0400 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPTS_2453 conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D YPTS_1903 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPTS_0866 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPTS_3836 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPTS_0626 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPTS_0109 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPTS_3990 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPTS_3844 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPTS_0108 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPTS_0145 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPTS_0865 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPTS_3340 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPTS_1536 aminotransferase class I and II K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPTS_1323 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPTS_2720 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPTS_2470 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPTS_1846 pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPTS_0490 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPTS_1771 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPTS_2831 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D YPTS_3321 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPTS_1412 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPTS_1515 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ypb00280]
D YPTS_0145 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPTS_2734 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPTS_0282 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPTS_3770 6-phosphogluconate dehydrogenase NAD-binding K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D YPTS_1126 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPTS_1582 Hydroxymethylglutaryl-coenzyme A synthase domain protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ypb00290]
D YPTS_0147 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPTS_4118 Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPTS_0696 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPTS_0695 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPTS_0697 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D YPTS_0702 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_0143 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_2294 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_0703 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPTS_2295 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPTS_0144 acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPTS_0154 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPTS_0146 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPTS_0145 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPTS_4124 aminotransferase class I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPTS_2684 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPTS_0698 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ypb00300]
D YPTS_3836 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPTS_0626 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPTS_0109 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPTS_3990 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPTS_2889 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPTS_0646 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D YPTS_3126 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D YPTS_3924 succinylornithine transaminase family K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPTS_2879 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPTS_0203 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPTS_1936 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPTS_3167 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPTS_1983 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D YPTS_0710 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPTS_0711 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:ypb00310]
D YPTS_1225 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPTS_2720 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPTS_2470 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPTS_1415 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPTS_3731 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPTS_1524 protein of unknown function DUF1338 K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D YPTS_2390 FAD linked oxidase domain protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
C 00220 Arginine biosynthesis [PATH:ypb00220]
D YPTS_0557 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D YPTS_1693 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPTS_0118 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPTS_3058 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPTS_3059 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPTS_3060 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPTS_1986 Glutaminase, core K01425 glsA; glutaminase [EC:3.5.1.2]
D YPTS_3355 Glutaminase, core K01425 glsA; glutaminase [EC:3.5.1.2]
D YPTS_0025 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPTS_4027 Glu/Leu/Phe/Val dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPTS_1536 aminotransferase class I and II K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPTS_2684 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPTS_3145 amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D YPTS_0117 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D YPTS_0115 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D YPTS_3924 succinylornithine transaminase family K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPTS_0114 acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:ypb00330]
D YPTS_3933 Amidohydrolase 3 K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPTS_1329 Orn/Lys/Arg decarboxylase major region K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D YPTS_3333 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D YPTS_3344 agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D YPTS_3343 N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D YPTS_3367 Orn/Lys/Arg decarboxylase major region K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPTS_0751 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPTS_0750 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPTS_2902 GCN5-related N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D YPTS_2012 arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D YPTS_2014 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D YPTS_2011 succinylornithine transaminase family K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D YPTS_2013 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D YPTS_2015 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D YPTS_3347 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D YPTS_1854 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPTS_0946 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPTS_0947 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D YPTS_1782 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPTS_1536 aminotransferase class I and II K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:ypb00340]
D YPTS_1671 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D YPTS_1664 phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D YPTS_1666 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D YPTS_1667 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YPTS_1665 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YPTS_1668 histidinol-phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D YPTS_1669 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPTS_1670 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D YPTS_4069 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D YPTS_4070 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D YPTS_2021 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D YPTS_2023 formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D YPTS_2020 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00350 Tyrosine metabolism [PATH:ypb00350]
D YPTS_1536 aminotransferase class I and II K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPTS_1669 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPTS_0400 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPTS_1322 Pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPTS_1627 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPTS_2171 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPTS_1769 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D YPTS_1770 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPTS_1764 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D YPTS_1763 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D YPTS_1765 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D YPTS_1762 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPTS_1761 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPTS_1766 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D YPTS_1767 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D YPTS_1415 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPTS_3731 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:ypb00360]
D YPTS_1322 Pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPTS_1536 aminotransferase class I and II K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPTS_1669 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPTS_0400 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPTS_2136 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D YPTS_0846 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:ypb00380]
D YPTS_1225 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPTS_1322 Pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPTS_1334 Catalase domain protein K03781 katE; catalase [EC:1.11.1.6]
D YPTS_0846 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ypb00400]
D YPTS_1243 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPTS_2395 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPTS_0877 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPTS_3944 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D YPTS_3757 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D YPTS_3852 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPTS_0952 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPTS_3945 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPTS_1516 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D YPTS_2727 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D YPTS_2201 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPTS_2200 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPTS_2199 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D YPTS_2198 phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D YPTS_2196 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPTS_2197 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPTS_0878 chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPTS_1478 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D YPTS_0881 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D YPTS_0823 extracellular solute-binding protein family 3 K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D YPTS_1536 aminotransferase class I and II K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPTS_1669 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPTS_0400 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ypb00410]
D YPTS_0759 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D YPTS_2916 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPTS_0760 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPTS_1126 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:ypb00430]
D YPTS_0965 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPTS_3911 Taurine catabolism dioxygenase TauD/TfdA K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPTS_2692 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPTS_2691 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:ypb00440]
D YPTS_0544 phosphonate metabolism K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D YPTS_0546 phosphonate C-P lyase system protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D YPTS_0545 phosphonate C-P lyase system protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D YPTS_0541 phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D YPTS_0540 phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D YPTS_0543 phosphonate metabolism PhnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D YPTS_0538 phosphonate metabolism protein PhnP K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:ypb00450]
D YPTS_0108 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPTS_3524 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_0359 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_2276 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_2826 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_3839 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPTS_0264 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPTS_2384 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D YPTS_0581 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D YPTS_1499 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YPTS_0800 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPTS_0799 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPTS_2153 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPTS_4154 L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPTS_1644 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ypb00460]
D YPTS_3621 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPTS_1105 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPTS_0965 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPTS_2150 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPTS_1512 L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPTS_4168 aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPTS_2978 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ypb00470]
D YPTS_0399 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YPTS_0717 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPTS_2720 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPTS_2470 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPTS_1986 Glutaminase, core K01425 glsA; glutaminase [EC:3.5.1.2]
D YPTS_3355 Glutaminase, core K01425 glsA; glutaminase [EC:3.5.1.2]
D YPTS_0133 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPTS_0713 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPTS_2337 Mandelate racemase/muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D YPTS_1846 pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPTS_0203 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPTS_1936 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPTS_3167 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPTS_1471 conserved hypothetical protein K23120 cntL; histidine 2-aminobutanoyltransferase [EC:2.5.1.152 2.5.1.-]
D YPTS_1472 conserved hypothetical protein K23122 cntM; staphylopine/pseudopaline/yersinopine synthase [EC:1.5.1.52 1.5.1.-]
D YPTS_2136 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:ypb00480]
D YPTS_0965 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPTS_3021 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D YPTS_3023 Allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D YPTS_3022 urea amidolyase related protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D YPTS_0865 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPTS_3340 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPTS_0562 peptidase M17 leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPTS_2960 peptidase M17 leucyl aminopeptidase domain protein K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPTS_1541 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPTS_0939 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPTS_2358 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPTS_1441 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPTS_4032 glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D YPTS_2510 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPTS_1663 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPTS_2109 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPTS_2407 glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D YPTS_0125 glutaredoxin-family domain protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D YPTS_3367 Orn/Lys/Arg decarboxylase major region K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPTS_0751 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:ypb00511]
D YPTS_2494 glycoside hydrolase family 2 TIM barrel K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPTS_1181 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:ypb00540]
D YPTS_3111 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPTS_0721 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPTS_3113 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPTS_1081 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPTS_3110 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPTS_1523 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPTS_3707 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPTS_2067 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPTS_3708 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPTS_1527 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPTS_0054 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPTS_2582 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D YPTS_2105 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPTS_1402 phosphoesterase PA-phosphatase related K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPTS_2364 protein of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPTS_4066 sulfatase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPTS_1744 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPTS_2401 glycosyl transferase family 39 K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPTS_3787 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPTS_0926 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPTS_1056 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPTS_3550 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPTS_1058 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPTS_3092 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPTS_0057 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPTS_1055 GHMP kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
D YPTS_1057 Nucleotidyl transferase K15669 hddC; D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase [EC:2.7.7.71]
D YPTS_0055 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPTS_0056 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPTS_0579 lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis [PATH:ypb00542]
D YPTS_0180 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ypb00541]
D YPTS_1661 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_1662 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPTS_1249 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPTS_2166 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPTS_0185 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPTS_0184 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YPTS_0187 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D YPTS_0186 TDP-D-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D YPTS_1042 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPTS_1043 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPTS_1044 DegT/DnrJ/EryC1/StrS aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPTS_1041 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPTS_1045 NAD-dependent epimerase/dehydratase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPTS_2256 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPTS_2614 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPTS_1054 NAD-dependent epimerase/dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D YPTS_4182 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPTS_0182 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPTS_0183 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:ypb00550]
D YPTS_3699 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPTS_0290 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPTS_0716 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPTS_0713 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPTS_0710 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPTS_0717 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPTS_0711 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPTS_3118 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPTS_3556 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPTS_1452 phosphoesterase PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPTS_0712 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPTS_0715 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPTS_3682 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPTS_3951 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPTS_0770 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPTS_1122 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPTS_1154 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPTS_0709 penicillin-binding protein transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPTS_1448 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPTS_1151 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPTS_0500 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:ypb00552]
D YPTS_3556 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPTS_1452 phosphoesterase PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPTS_0180 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ypb00543]
D YPTS_0180 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPTS_0191 glycosyl transferase, WecB/TagA/CpsF family K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPTS_0189 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPTS_2001 glycosyl transferase family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D YPTS_2002 haemin storage system, HmsS protein K11937 pgaD; biofilm PGA synthesis protein PgaD
D YPTS_0067 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ypb00730]
D YPTS_0311 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D YPTS_2930 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D YPTS_0309 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D YPTS_2128 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPTS_2967 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPTS_0984 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPTS_0306 thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D YPTS_0980 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPTS_0307 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D YPTS_0310 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D YPTS_0978 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D YPTS_0443 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPTS_2298 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPTS_2534 thiamine kinase K07251 thiK; thiamine kinase [EC:2.7.1.89]
D YPTS_1039 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:ypb00740]
D YPTS_2214 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPTS_0975 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPTS_0206 HAD-superfamily hydrolase, subfamily IA, variant 1 K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D YPTS_3546 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D YPTS_0976 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D YPTS_2378 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D YPTS_0640 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D YPTS_2503 histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPTS_1770 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPTS_0281 oxidoreductase FAD/NAD(P)-binding domain protein K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D YPTS_3796 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D YPTS_3540 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPTS_2512 NUDIX hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D YPTS_2706 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:ypb00750]
D YPTS_2361 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D YPTS_2359 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D YPTS_3329 D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D YPTS_2715 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D YPTS_1515 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPTS_0657 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D YPTS_2998 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D YPTS_0628 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ypb00760]
D YPTS_3009 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPTS_1239 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D YPTS_0737 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D YPTS_1539 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D YPTS_1281 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPTS_0606 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPTS_0610 transcriptional regulator, XRE family K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPTS_0807 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPTS_1174 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPTS_1157 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D YPTS_0786 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPTS_0313 NUDIX hydrolase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D YPTS_2982 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D YPTS_0858 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D YPTS_2149 isochorismatase hydrolase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D YPTS_2522 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D YPTS_1217 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D YPTS_0127 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D YPTS_2303 NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D YPTS_2302 NAD(P) transhydrogenase beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D YPTS_1415 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPTS_3731 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:ypb00770]
D YPTS_0702 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_0143 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_2294 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPTS_0703 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPTS_2295 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPTS_0144 acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPTS_0154 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPTS_0146 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPTS_0761 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D YPTS_0986 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D YPTS_0760 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPTS_0292 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D YPTS_0047 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D YPTS_0786 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPTS_0052 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D YPTS_0730 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D YPTS_2997 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D YPTS_0967 protein of unknown function DUF479 K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D YPTS_0145 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPTS_0759 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:ypb00780]
D YPTS_1263 biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D YPTS_2721 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPTS_1580 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPTS_1554 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPTS_2557 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPTS_2559 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPTS_1581 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPTS_1579 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPTS_3112 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPTS_3967 bioH protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D YPTS_1262 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPTS_1260 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPTS_1264 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPTS_2262 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPTS_1261 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D YPTS_0291 bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPTS_3165 molybdopterin oxidoreductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
C 00785 Lipoic acid metabolism [PATH:ypb00785]
D YPTS_1149 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D YPTS_1148 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D YPTS_2397 lipoyltransferase and lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0743 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPTS_0744 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPTS_1224 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPTS_1225 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPTS_3311 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPTS_3313 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPTS_3312 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:ypb00790]
D YPTS_1630 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D YPTS_2298 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPTS_2096 NUDIX hydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D YPTS_3557 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D YPTS_0762 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D YPTS_0505 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D YPTS_0652 dihydrofolate reductase region K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPTS_2710 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D YPTS_2214 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPTS_3925 glutamine amidotransferase of anthranilate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D YPTS_1773 para-aminobenzoate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D YPTS_2556 aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D YPTS_0791 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPTS_0790 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPTS_1007 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPTS_3133 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPTS_1270 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPTS_1271 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPTS_1273 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPTS_0631 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPTS_1619 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YPTS_0015 molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:ypb00670]
D YPTS_0652 dihydrofolate reductase region K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPTS_1085 tetrahydrofolate dehydrogenase/cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D YPTS_2978 glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPTS_2901 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPTS_0321 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPTS_3858 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPTS_3313 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPTS_3839 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPTS_3155 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D YPTS_2163 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPTS_0110 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPTS_0369 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPTS_3320 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ypb00860]
D YPTS_2806 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPTS_2062 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D YPTS_0774 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPTS_0278 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPTS_0196 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D YPTS_0195 Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D YPTS_0315 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D YPTS_2856 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D YPTS_0022 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D YPTS_0287 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D YPTS_1040 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D YPTS_0194 protein of unknown function DUF513 hemX K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D YPTS_0798 uroporphyrin-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPTS_3938 uroporphyrin-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPTS_0989 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPTS_2205 cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D YPTS_3892 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ypb00130]
D YPTS_0389 Chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D YPTS_0390 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPTS_0280 UbiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D YPTS_2706 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPTS_3315 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D YPTS_1342 ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D YPTS_3316 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D YPTS_0271 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D YPTS_1171 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D YPTS_2655 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPTS_2654 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D YPTS_2653 alpha/beta hydrolase fold protein K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D YPTS_2651 Mandelate racemase/muconate lactonizing protein K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D YPTS_2650 O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D YPTS_2652 naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D YPTS_2389 thioesterase superfamily protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D YPTS_0098 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPTS_1860 flavoprotein WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D YPTS_2506 NmrA family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ypb00900]
D YPTS_0980 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPTS_3119 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D YPTS_0804 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D YPTS_2060 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D YPTS_0805 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D YPTS_2950 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D YPTS_0644 hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D YPTS_1582 Hydroxymethylglutaryl-coenzyme A synthase domain protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPTS_2706 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPTS_0981 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPTS_0493 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPTS_3118 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:ypb00907]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPTS_2734 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPTS_0282 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D YPTS_3330 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPTS_0851 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPTS_0852 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ypb00523]
D YPTS_0185 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPTS_0184 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:ypb01053]
D YPTS_2655 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPTS_1725 4'-phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPTS_1718 Chorismate binding-like protein K04781 mbtI; salicylate synthetase [EC:5.4.4.2 4.2.99.21]
D YPTS_3434 amino acid adenylation domain protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D YPTS_3432 thiazolinyl imide reductase K12241 pchG; pyochelin biosynthesis protein PchG
D YPTS_1709 AMP-dependent synthetase and ligase K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-]
D YPTS_1713 amino acid adenylation domain protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase
D YPTS_1711 thiazolinyl imide reductase K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component
D YPTS_1712 Beta-ketoacyl synthase K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase
C 01055 Biosynthesis of vancomycin group antibiotics
D YPTS_0184 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:ypb00946]
D YPTS_3621 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPTS_1105 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:ypb00332]
D YPTS_0946 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPTS_0947 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ypb00261]
D YPTS_0800 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPTS_0799 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPTS_3836 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPTS_0626 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPTS_0109 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPTS_3990 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPTS_2889 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPTS_0646 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ypb00521]
D YPTS_2799 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPTS_3039 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPTS_2970 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPTS_1129 oxidoreductase domain protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPTS_0185 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPTS_0184 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D YPTS_2799 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:ypb00525]
D YPTS_0185 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPTS_0184 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ypb00401]
D YPTS_0878 chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPTS_1536 aminotransferase class I and II K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPTS_1669 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPTS_0400 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D YPTS_2201 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPTS_2200 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D YPTS_1588 putative acyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPTS_2560 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPTS_2559 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPTS_1581 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D YPTS_2558 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ypb00999]
D YPTS_3335 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPTS_3852 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPTS_3621 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPTS_1105 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites [PATH:ypb00997]
D YPTS_3402 aerobactin siderophore biosynthesis protein IucD K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59]
D YPTS_3400 putative siderophore biosynthesis protein IucB K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
D YPTS_3399 IucA/IucC family protein K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D YPTS_3401 IucA/IucC family protein K03895 iucC; aerobactin synthase [EC:6.3.2.39]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ypb00362]
D YPTS_2734 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPTS_0282 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPTS_4044 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YPTS_2048 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPTS_3769 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPTS_0083 LmbE family protein K16515 galB; 4-oxalomesaconate hydratase [EC:4.2.1.83]
D YPTS_0082 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00627 Aminobenzoate degradation [PATH:ypb00627]
D YPTS_1570 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D YPTS_2706 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:ypb00364]
D YPTS_0265 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:ypb00625]
D YPTS_1627 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPTS_2171 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ypb00361]
D YPTS_0265 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:ypb00623]
D YPTS_0265 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D YPTS_4044 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:ypb00633]
D YPTS_2366 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D YPTS_1286 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D YPTS_2734 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPTS_0282 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
D YPTS_3058 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPTS_3059 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPTS_3060 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:ypb00930]
D YPTS_0283 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPTS_2733 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D YPTS_4044 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:ypb00626]
D YPTS_1627 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPTS_2171 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ypb03020]
D YPTS_0304 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPTS_0305 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPTS_3865 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPTS_0037 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ypb03010]
D YPTS_1518 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YPTS_3123 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YPTS_3884 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YPTS_3866 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YPTS_3873 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YPTS_0468 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YPTS_3896 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YPTS_3876 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YPTS_3692 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YPTS_3891 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YPTS_3867 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YPTS_3897 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YPTS_3868 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YPTS_3877 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YPTS_0513 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YPTS_0870 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YPTS_3881 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YPTS_0470 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YPTS_3886 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YPTS_0639 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YPTS_3560 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YPTS_0300 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YPTS_3887 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YPTS_3890 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YPTS_3889 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D YPTS_3878 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YPTS_3875 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YPTS_0302 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPTS_0471 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YPTS_0301 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YPTS_0299 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YPTS_3693 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YPTS_3880 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YPTS_3871 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YPTS_3883 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YPTS_3864 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YPTS_3874 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YPTS_0873 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YPTS_2413 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YPTS_0494 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YPTS_3885 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YPTS_3888 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D YPTS_3879 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YPTS_1391 ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YPTS_0495 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YPTS_0049 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YPTS_3882 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YPTS_3872 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D YPTS_0105 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPTS_1024 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPTS_2563 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YPTS_0050 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YPTS_4205 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YPTS_2414 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YPTS_3869 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPTS_1023 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPTS_R0084 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0085 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0089 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0088 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0090 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0087 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0092 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0094 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0093 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0091 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0096 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0097 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ypb00970]
D YPTS_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0027 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0055 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0044 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0065 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0022 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0024 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0023 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0070 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPTS_R0072 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPTS_R0071 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPTS_R0002 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPTS_R0059 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPTS_R0060 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPTS_R0039 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPTS_R0076 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPTS_R0077 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPTS_R0079 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPTS_R0001 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPTS_R0058 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPTS_R0014 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPTS_R0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPTS_R0012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0015 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0016 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0038 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0017 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0057 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0005 tRNA-His K14226 tRNA-His; tRNA His
D YPTS_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPTS_R0054 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPTS_R0026 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPTS_R0018 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0075 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0006 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0081 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0082 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0080 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0029 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0032 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0031 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0064 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0030 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0037 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0033 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0074 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0078 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0050 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0019 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0046 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0047 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0048 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0049 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPTS_R0083 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPTS_R0007 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPTS_R0053 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPTS_R0073 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPTS_R0036 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0021 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0034 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0068 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0069 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0013 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPTS_R0056 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPTS_R0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPTS_R0035 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPTS_R0003 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPTS_R0011 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPTS_R0066 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPTS_R0067 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPTS_R0061 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0062 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0063 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0041 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0042 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0043 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0052 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPTS_2806 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPTS_1179 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPTS_0861 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPTS_2095 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPTS_1538 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPTS_4133 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPTS_4134 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPTS_2416 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPTS_1505 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPTS_4154 L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPTS_1083 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPTS_1644 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPTS_3858 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPTS_0560 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPTS_1160 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPTS_0641 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPTS_3294 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPTS_2088 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPTS_3098 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPTS_2949 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPTS_2412 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPTS_2411 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPTS_2360 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPTS_3939 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ypb03060]
D YPTS_3870 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPTS_0297 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D YPTS_0507 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D YPTS_0971 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPTS_0972 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D YPTS_0970 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D YPTS_4202 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPTS_0724 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPTS_0065 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPTS_0723 secretion monitor family proten K13301 secM; secretion monitor
D YPTS_0869 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPTS_0236 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPTS_0274 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D YPTS_0275 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D YPTS_0276 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D YPTS_1147 twin-arginine translocation protein, TatA/E family subunit K03425 tatE; sec-independent protein translocase protein TatE
D YPTS_3002 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YPTS_0642 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ypb04122]
D YPTS_2128 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPTS_2967 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPTS_1323 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPTS_0229 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPTS_3898 sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D YPTS_3899 sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPTS_3900 sulfur relay protein TusD/DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPTS_1571 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPTS_2513 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPTS_1273 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPTS_1270 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPTS_1272 molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein
D YPTS_0583 thiamineS protein K03636 moaD; sulfur-carrier protein
D YPTS_1618 molybdopterin synthase sulfurylase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D YPTS_0585 UBA/THIF-type NAD/FAD binding protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D YPTS_1271 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPTS_0631 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPTS_0984 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPTS_0308 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D YPTS_0309 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:ypb03018]
D YPTS_3158 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPTS_2568 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPTS_0177 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPTS_0788 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPTS_0514 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPTS_1294 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPTS_0461 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPTS_0516 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPTS_0217 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPTS_0179 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPTS_0077 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPTS_0635 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPTS_0431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPTS_0453 RNA chaperone Hfq K03666 hfq; host factor-I protein
D YPTS_2907 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPTS_0763 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ypb03030]
D YPTS_1783 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPTS_3082 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPTS_3108 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPTS_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPTS_2553 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPTS_1158 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPTS_0595 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPTS_0561 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPTS_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPTS_0398 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPTS_3561 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPTS_0403 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPTS_3083 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPTS_3109 ribonuclease HII/HIII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPTS_0019 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPTS_0039 NAD-dependent DNA ligase adenylation K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPTS_2811 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ypb03410]
D YPTS_2230 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPTS_3017 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YPTS_3358 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPTS_0051 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPTS_1836 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPTS_4132 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPTS_2158 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPTS_1432 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPTS_0019 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPTS_3296 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPTS_0039 NAD-dependent DNA ligase adenylation K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPTS_2811 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ypb03420]
D YPTS_2527 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPTS_0402 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D YPTS_1266 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D YPTS_1868 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D YPTS_0207 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPTS_0019 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPTS_0039 NAD-dependent DNA ligase adenylation K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPTS_2811 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:ypb03430]
D YPTS_0811 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D YPTS_0451 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D YPTS_3159 DNA mismatch repair endonuclease mutH K03573 mutH; DNA mismatch repair protein MutH
D YPTS_0207 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPTS_1681 Exonuclease domain protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPTS_2942 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPTS_0982 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YPTS_3296 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPTS_0403 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPTS_3108 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPTS_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPTS_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPTS_1158 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPTS_2553 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPTS_3082 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPTS_1783 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPTS_0561 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPTS_0595 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPTS_0039 NAD-dependent DNA ligase adenylation K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPTS_2811 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPTS_1904 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPTS_3942 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:ypb03440]
D YPTS_3296 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPTS_0403 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPTS_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D YPTS_2999 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D YPTS_1037 recombination protein RecR K06187 recR; recombination protein RecR
D YPTS_0859 recA protein K03553 recA; recombination protein RecA
D YPTS_0019 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPTS_2099 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YPTS_2100 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPTS_2098 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPTS_0034 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPTS_3147 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPTS_3149 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPTS_3146 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YPTS_3108 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPTS_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPTS_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPTS_1158 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPTS_2553 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPTS_3082 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPTS_1783 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPTS_0561 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPTS_0595 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPTS_0104 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPTS_0469 primosomal replication protein N K02686 priB; primosomal replication protein N
D YPTS_1031 Primosomal replication priB and priC K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:ypb03250]
D YPTS_3927 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ypb02010]
D YPTS_2835 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPTS_0078 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPTS_2834 sulfate ABC transporter, inner membrane subunit K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPTS_2833 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPTS_2832 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPTS_3914 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D YPTS_3912 binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein
D YPTS_3913 ABC transporter related K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPTS_3795 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPTS_3793 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D YPTS_3792 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPTS_1255 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YPTS_0080 extracellular solute-binding protein family 1 K02020 modA; molybdate transport system substrate-binding protein
D YPTS_1256 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D YPTS_1257 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPTS_1252 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein
D YPTS_2780 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D YPTS_2876 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D YPTS_2781 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D YPTS_2875 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D YPTS_2874 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPTS_2782 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPTS_0687 thiamine ABC transporter, periplasmic binding protein K02064 thiB; thiamine transport system substrate-binding protein
D YPTS_0686 thiamine ABC transporter, inner membrane subunit K02063 thiP; thiamine transport system permease protein
D YPTS_0685 ABC transporter, ATPase subunit, ThiQ subfamily K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPTS_1458 extracellular solute-binding protein family 1 K11073 potF; putrescine transport system substrate-binding protein
D YPTS_1461 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein
D YPTS_1460 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D YPTS_1459 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPTS_3078 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPTS_3077 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D YPTS_3076 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPTS_1324 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPTS_1325 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D YPTS_1327 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D YPTS_1326 ABC transporter related K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPTS_3830 extracellular solute-binding protein family 1 K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPTS_3831 binding-protein-dependent transport systems inner membrane component K10109 malF; maltose/maltodextrin transport system permease protein
D YPTS_3832 binding-protein-dependent transport systems inner membrane component K10110 malG; maltose/maltodextrin transport system permease protein
D YPTS_3828 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_2615 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_3224 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_1965 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_3628 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_0534 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_3223 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPTS_3222 binding-protein-dependent transport systems inner membrane component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPTS_3221 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPTS_2436 extracellular solute-binding protein family 1 K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPTS_2433 binding-protein-dependent transport systems inner membrane component K10193 togM; oligogalacturonide transport system permease protein
D YPTS_2434 binding-protein-dependent transport systems inner membrane component K10194 togN; oligogalacturonide transport system permease protein
D YPTS_2435 ABC transporter related K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPTS_3702 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YPTS_3703 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPTS_3704 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPTS_3701 anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D YPTS_3705 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPTS_2632 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPTS_4004 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPTS_3366 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPTS_2630 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D YPTS_4005 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D YPTS_3364 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D YPTS_2631 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPTS_3365 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPTS_4006 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPTS_4164 RbsD or FucU transport K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D YPTS_2244 periplasmic binding protein/LacI transcriptional regulator K10537 araF; L-arabinose transport system substrate-binding protein
D YPTS_2246 inner-membrane translocator K10538 araH; L-arabinose transport system permease protein
D YPTS_2245 ABC transporter related K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPTS_0136 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPTS_0139 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein
D YPTS_0138 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein
D YPTS_0137 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPTS_1632 periplasmic binding protein/LacI transcriptional regulator K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPTS_1634 inner-membrane translocator K10541 mglC; methyl-galactoside transport system permease protein
D YPTS_1633 ABC transporter related K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPTS_4107 D-xylose ABC transporter, periplasmic substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPTS_4105 inner-membrane translocator K10544 xylH; D-xylose transport system permease protein
D YPTS_4106 D-xylose ABC transporter, ATPase subunit K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPTS_2281 periplasmic binding protein/LacI transcriptional regulator K17202 eryG; erythritol transport system substrate-binding protein
D YPTS_0847 periplasmic binding protein/LacI transcriptional regulator K17202 eryG; erythritol transport system substrate-binding protein
D YPTS_2282 inner-membrane translocator K17203 eryF; erythritol transport system permease protein
D YPTS_0850 inner-membrane translocator K17203 eryF; erythritol transport system permease protein
D YPTS_2283 ABC transporter related K17204 eryE; erythritol transport system ATP-binding protein
D YPTS_0849 ABC transporter related K17204 eryE; erythritol transport system ATP-binding protein
D YPTS_3227 periplasmic binding protein/LacI transcriptional regulator K17205 xltC; putative xylitol transport system substrate-binding protein
D YPTS_3226 inner-membrane translocator K17206 xltB; putative xylitol transport system permease protein
D YPTS_3225 ABC transporter related K17207 xltA; putative xylitol transport system ATP-binding protein
D YPTS_1130 periplasmic binding protein/LacI transcriptional regulator K17208 ibpA; inositol transport system substrate-binding protein
D YPTS_1132 inner-membrane translocator K17209 iatP; inositol transport system permease protein
D YPTS_1131 ABC transporter related K17210 iatA; inositol transport system ATP-binding protein
D YPTS_0255 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPTS_0256 binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPTS_0257 ABC transporter related K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPTS_0960 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPTS_4186 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPTS_2906 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein
D YPTS_4187 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D YPTS_2905 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D YPTS_4188 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D YPTS_2904 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPTS_4189 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPTS_1312 phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPTS_1313 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D YPTS_1314 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D YPTS_1311 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPTS_2702 polar amino acid ABC transporter, inner membrane subunit K10015 hisM; histidine transport system permease protein
D YPTS_2703 polar amino acid ABC transporter, inner membrane subunit K10016 hisQ; histidine transport system permease protein
D YPTS_2701 ABC transporter related K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_2704 cationic amino acid ABC transporter, periplasmic binding protein K10014 hisJ; histidine transport system substrate-binding protein
D YPTS_2643 cationic amino acid ABC transporter, periplasmic binding protein K10036 glnH; glutamine transport system substrate-binding protein
D YPTS_2644 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein
D YPTS_2645 ABC transporter related K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_1464 cationic amino acid ABC transporter, periplasmic binding protein K09996 artJ; arginine transport system substrate-binding protein
D YPTS_1476 cationic amino acid ABC transporter, periplasmic binding protein K09997 artI; arginine transport system substrate-binding protein
D YPTS_1474 polar amino acid ABC transporter, inner membrane subunit K09998 artM; arginine transport system permease protein
D YPTS_1475 polar amino acid ABC transporter, inner membrane subunit K09999 artQ; arginine transport system permease protein
D YPTS_1477 ABC transporter related K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_1165 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPTS_1163 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D YPTS_1164 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D YPTS_1162 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_1847 extracellular solute-binding protein family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D YPTS_1848 polar amino acid ABC transporter, inner membrane subunit K10009 tcyB; L-cystine transport system permease protein
D YPTS_1849 ABC transporter related K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_0241 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPTS_0242 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D YPTS_0243 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D YPTS_0244 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPTS_0245 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPTS_1445 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPTS_3095 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein
D YPTS_1447 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D YPTS_3094 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D YPTS_3093 D-methionine ABC transporter, ATPase subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPTS_1446 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D YPTS_1316 urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein
D YPTS_1317 urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein
D YPTS_1318 urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein
D YPTS_1319 urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein
D YPTS_1320 urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein
D YPTS_1265 ABC transporter related K11963 urtE; urea transport system ATP-binding protein
D YPTS_2173 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPTS_2335 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPTS_2174 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D YPTS_2175 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D YPTS_2176 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D YPTS_2177 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D YPTS_4058 extracellular solute-binding protein family 5 K12368 dppA; dipeptide transport system substrate-binding protein
D YPTS_4057 binding-protein-dependent transport systems inner membrane component K12369 dppB; dipeptide transport system permease protein
D YPTS_4056 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein
D YPTS_4055 oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein
D YPTS_4054 oligopeptide/dipeptide ABC transporter, ATPase subunit K12372 dppF; dipeptide transport system ATP-binding protein
D YPTS_2349 extracellular solute-binding protein family 5 K19226 sapA; cationic peptide transport system substrate-binding protein
D YPTS_2350 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein
D YPTS_2351 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein
D YPTS_2352 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein
D YPTS_2353 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein
D YPTS_1399 extracellular solute-binding protein family 5 K13893 yejA; microcin C transport system substrate-binding protein
D YPTS_1398 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D YPTS_1397 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D YPTS_1396 ABC transporter related K13896 yejF; microcin C transport system ATP-binding protein
D YPTS_3497 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPTS_1658 periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPTS_1657 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein
D YPTS_1656 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein
D YPTS_1655 ABC transporter related K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPTS_0772 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPTS_0773 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein
D YPTS_0771 ABC transporter related K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPTS_0779 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPTS_2408 transport system permease protein K06073 btuC; vitamin B12 transport system permease protein
D YPTS_2406 ABC transporter related K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPTS_2103 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D YPTS_2101 ABC-3 protein K09816 znuB; zinc transport system permease protein
D YPTS_2102 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPTS_2421 periplasmic solute binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPTS_2423 ABC-3 protein K11605 sitC; manganese/iron transport system permease protein
D YPTS_2424 ABC-3 protein K11606 sitD; manganese/iron transport system permease protein
D YPTS_2422 ABC transporter related K11607 sitB; manganese/iron transport system ATP-binding protein
D YPTS_0573 ABC transporter, perplasmic sugar binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPTS_0575 inner-membrane translocator K10556 lsrC; AI-2 transport system permease protein
D YPTS_0574 inner-membrane translocator K10557 lsrD; AI-2 transport system permease protein
D YPTS_0576 ABC transporter related K10558 lsrA; AI-2 transport system ATP-binding protein
D YPTS_2524 lipoprotein releasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D YPTS_2526 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D YPTS_2525 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPTS_2743 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D YPTS_2744 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D YPTS_2745 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D YPTS_2746 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPTS_0563 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D YPTS_0564 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D YPTS_3711 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPTS_0238 protein insertion ABC transporter, inner membrane subunit FtsX K09811 ftsX; cell division transport system permease protein
D YPTS_0237 Type II (General) Secretory Pathway (IISP) Family protein K09812 ftsE; cell division transport system ATP-binding protein
D YPTS_1715 ABC transporter related K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPTS_3429 ABC transporter related K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPTS_1716 ABC transporter related K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPTS_3428 ABC transporter related K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPTS_1522 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPTS_1012 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPTS_1013 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPTS_0093 ABC transporter related K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPTS_1138 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPTS_0121 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPTS_1497 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPTS_1498 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPTS_1491 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPTS_2821 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:ypb02060]
D YPTS_2816 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPTS_2815 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D YPTS_2817 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPTS_2551 PTS system, glucose-specific IIBC subunit K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPTS_1178 PTS system, N-acetylglucosamine-specific IIBC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPTS_3722 PTS system, trehalose-specific IIBC subunit K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPTS_4138 PTS system, mannitol-specific IIC subunit K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPTS_3045 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPTS_3047 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPTS_3046 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D YPTS_1757 PTS system, mannose/fructose/sorbose family, IIB subunit K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPTS_1756 PTS system, mannose/fructose/sorbose family, IIC subunit K02795 manY; mannose PTS system EIIC component
D YPTS_1755 PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component
D YPTS_3202 PTS system fructose subfamily IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPTS_3199 PTS system, mannose/fructose/sorbose family, IIB subunit K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPTS_3200 phosphotransferase system PTS sorbose-specific IIC subunit K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPTS_3201 PTS system mannose/fructose/sorbose family IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPTS_2694 putative PTS IIA-like nitrogen-regulatory protein PtsN K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPTS_2695 phosphotransferase system lactose/cellobiose-specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPTS_2696 putative sugar-specific permease SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component
D YPTS_1424 phosphocarrier, HPr family K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPTS_1426 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPTS_1425 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPTS_3157 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPTS_3716 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
D YPTS_3714 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:ypb03070]
D YPTS_3541 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPTS_4211 type III secretion system needle protein K03221 yscF; type III secretion protein F
D YPTS_0340 type III secretion system needle protein K03221 yscF; type III secretion protein F
D YPTS_4286 type III secretion YscO fmaily protein K04056 yscO; type III secretion protein O
D YPTS_4287 type III secretion system needle length determinant K04057 yscP; type III secretion protein P
D YPTS_4281 type III secretion protein, YscX family K04059 yscX; type III secretion protein X
D YPTS_4208 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C
D YPTS_0336 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C
D YPTS_4284 type III secretion regulator YopN/LcrE/InvE/MxiC K04058 yscW; type III secretion protein W
D YPTS_0343 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J
D YPTS_4215 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J
D YPTS_4289 Yop virulence translocation R K03226 yscR; type III secretion protein R
D YPTS_0351 Yop virulence translocation R K03226 yscR; type III secretion protein R
D YPTS_4290 type III secretion protein, HrpO family K03227 yscS; type III secretion protein S
D YPTS_0352 type III secretion protein, HrpO family K03227 yscS; type III secretion protein S
D YPTS_4291 type III secretion protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T
D YPTS_0353 type III secretion protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T
D YPTS_4292 type III secretion protein, YscU/HrpY family K03229 yscU; type III secretion protein U
D YPTS_0354 type III secretion protein, YscU/HrpY family K03229 yscU; type III secretion protein U
D YPTS_4279 type III secretion protein, HrcV family K03230 yscV; type III secretion protein V
D YPTS_0346 type III secretion protein, HrcV family K03230 yscV; type III secretion protein V
D YPTS_4285 type III secretion apparatus H+-transporting two-sector ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPTS_0347 type III secretion apparatus H+-transporting two-sector ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPTS_0350 type III secretion system apparatus protein YscQ/HrcQ K03225 yscQ; type III secretion protein Q
D YPTS_4288 type III secretion system apparatus protein YscQ/HrcQ K03225 yscQ; type III secretion protein Q
D YPTS_4217 type III secretion apparatus protein, HrpE/YscL family K03223 yscL; type III secretion protein L
D YPTS_3187 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D YPTS_3176 conserved hypothetical protein K02465 gspS; general secretion pathway protein S
D YPTS_3188 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPTS_3185 type II secretion system protein K02455 gspF; general secretion pathway protein F
D YPTS_3184 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPTS_3183 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D YPTS_3182 type II secretion system protein I/J K02458 gspI; general secretion pathway protein I
D YPTS_3181 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPTS_3180 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPTS_3179 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D YPTS_3186 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPTS_3177 peptidase A24A domain protein K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPTS_0971 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPTS_0972 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D YPTS_0297 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D YPTS_0507 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D YPTS_3870 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPTS_0970 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D YPTS_4202 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPTS_0724 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPTS_0723 secretion monitor family proten K13301 secM; secretion monitor
D YPTS_0236 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPTS_0065 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPTS_0869 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPTS_0274 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D YPTS_0275 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D YPTS_0276 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D YPTS_1147 twin-arginine translocation protein, TatA/E family subunit K03425 tatE; sec-independent protein translocase protein TatE
D YPTS_2085 Hemolysin activator HlyB domain protein K11017 shlB; hemolysin activation/secretion protein
D YPTS_3837 Hemolysin activator HlyB domain protein K11017 shlB; hemolysin activation/secretion protein
D YPTS_3838 filamentous haemagglutinin family outer membrane protein K11016 shlA; hemolysin
D YPTS_4238 YadA domain protein K12341 yadA; adhesin YadA
D YPTS_1513 Haemagluttinin domain protein K12342 yadB_C; adhesin YadB/C
D YPTS_1514 conserved hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPTS_3421 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_3379 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_1600 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_2756 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_3807 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_0671 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_1597 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_3823 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_2761 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_1595 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_0666 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_3381 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_3816 lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPTS_1612 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPTS_2760 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPTS_0676 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPTS_2757 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPTS_3809 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPTS_1606 ImcF domain protein K11891 impL; type VI secretion system protein ImpL
D YPTS_0679 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPTS_3814 membrane protein K11892 impK; type VI secretion system protein ImpK
D YPTS_2758 type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK
D YPTS_3383 possibly conserved membrane protein K11892 impK; type VI secretion system protein ImpK
D YPTS_1593 conserved hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPTS_0678 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
D YPTS_3380 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPTS_2768 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPTS_3813 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPTS_0670 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPTS_1596 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ypb02020]
D YPTS_0959 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPTS_0958 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPTS_2829 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPTS_2298 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPTS_0960 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPTS_4186 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPTS_2519 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPTS_2518 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPTS_2273 protein of unknown function DUF6 transmembrane K07790 pagO; putative membrane protein PagO
D YPTS_3959 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPTS_3960 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPTS_1350 porin Gram-negative type K09475 ompC; outer membrane pore protein C
D YPTS_1537 porin Gram-negative type K09476 ompF; outer membrane pore protein F
D YPTS_0070 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPTS_0071 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPTS_3668 conserved hypothetical protein K25864 mzrA; modulator protein MzrA
D YPTS_2308 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPTS_2307 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPTS_0782 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPTS_3301 integral membrane sensor signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPTS_3302 two component transcriptional regulator, winged helix family K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPTS_2923 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPTS_2924 two component transcriptional regulator, winged helix family K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPTS_2919 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPTS_2920 acriflavin resistance protein K07788 mdtB; multidrug efflux pump
D YPTS_2921 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D YPTS_2922 major facilitator superfamily MFS_1 K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPTS_2869 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18324 acrD; multidrug efflux pump
D YPTS_0498 integral membrane sensor signal transduction histidine kinase K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPTS_0499 two component transcriptional regulator, winged helix family K07771 basR; two-component system, OmpR family, response regulator BasR
D YPTS_2405 DegT/DnrJ/EryC1/StrS aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPTS_2049 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPTS_2050 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPTS_2488 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD
D YPTS_2487 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D YPTS_3461 flagellin domain protein K02406 fliC; flagellin
D YPTS_3462 flagellin domain protein K02406 fliC; flagellin
D YPTS_1842 flagellin domain protein K02406 fliC; flagellin
D YPTS_3455 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPTS_1843 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPTS_2486 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPTS_3454 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPTS_3034 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPTS_3035 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPTS_3031 potassium-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D YPTS_3032 K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D YPTS_3033 potassium-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit
D YPTS_3684 multi-sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPTS_0624 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPTS_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D YPTS_0875 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPTS_1636 malic protein NAD-binding K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPTS_2007 integral membrane sensor signal transduction histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPTS_2867 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPTS_0439 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPTS_0438 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPTS_0437 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPTS_0436 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPTS_4063 phosphoglycerate transporter K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPTS_4064 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPTS_4065 two component transcriptional regulator, LuxR family K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPTS_1721 two component transcriptional regulator, LuxR family K20264 fusR; two-component system, NarL family, response regulator FusR
D YPTS_3096 putative lipoprotein K06080 rcsF; RcsF protein
D YPTS_1345 integral membrane sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPTS_1347 multi-sensor signal transduction histidine kinase K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPTS_1346 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPTS_0783 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPTS_1867 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPTS_0862 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D YPTS_1971 histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D YPTS_1972 two component transcriptional regulator, LuxR family K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D YPTS_2457 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2461 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2458 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2456 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2444 Pili assembly chaperone, N-terminal K07346 fimC; fimbrial chaperone protein
D YPTS_2459 pilus assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPTS_0170 Pili assembly chaperone, N-terminal K07346 fimC; fimbrial chaperone protein
D YPTS_1431 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2446 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2460 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_0169 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2765 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_1968 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_3509 putative membrane protein K02279 cpaB; pilus assembly protein CpaB
D YPTS_3510 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D YPTS_3512 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPTS_3513 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPTS_3514 type II secretion system protein K12510 tadB; tight adherence protein B
D YPTS_3515 type II secretion system protein K12511 tadC; tight adherence protein C
D YPTS_3125 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D YPTS_2981 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D YPTS_0024 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPTS_0023 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPTS_0025 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPTS_1284 signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPTS_1285 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPTS_1283 conserved hypothetical protein K07803 zraP; zinc resistance-associated protein
D YPTS_4048 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPTS_3712 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D YPTS_2986 integral membrane sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPTS_2984 two component, sigma54 specific, transcriptional regulator, Fis family K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPTS_2478 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPTS_1354 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPTS_2646 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPTS_2480 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPTS_3173 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPTS_4146 methyl-accepting chemotaxis sensory transducer K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPTS_2491 methyl-accepting chemotaxis sensory transducer K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPTS_2479 methyl-accepting chemotaxis sensory transducer K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPTS_2507 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D YPTS_2483 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D YPTS_2484 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPTS_2476 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPTS_2477 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPTS_0335 multi-sensor hybrid histidine kinase K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPTS_0334 two component transcriptional regulator, LuxR family K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPTS_3486 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D YPTS_1162 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_1163 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D YPTS_1164 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D YPTS_1165 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPTS_3921 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPTS_1986 Glutaminase, core K01425 glsA; glutaminase [EC:3.5.1.2]
D YPTS_3355 Glutaminase, core K01425 glsA; glutaminase [EC:3.5.1.2]
D YPTS_1228 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPTS_1229 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPTS_1230 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D YPTS_2239 type I secretion system ATPase K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPTS_2240 type I secretion membrane fusion protein, HlyD family K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPTS_2241 type I secretion system ATPase K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPTS_3541 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPTS_0182 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPTS_0183 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPTS_0591 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPTS_3478 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPTS_1797 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D YPTS_3367 Orn/Lys/Arg decarboxylase major region K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ypb02024]
D YPTS_0866 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPTS_0453 RNA chaperone Hfq K03666 hfq; host factor-I protein
D YPTS_2201 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPTS_2200 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPTS_1243 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPTS_2395 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPTS_0877 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPTS_2986 integral membrane sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPTS_2984 two component, sigma54 specific, transcriptional regulator, Fis family K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPTS_2488 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD
D YPTS_2487 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D YPTS_3035 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPTS_1721 two component transcriptional regulator, LuxR family K20264 fusR; two-component system, NarL family, response regulator FusR
D YPTS_0573 ABC transporter, perplasmic sugar binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPTS_0575 inner-membrane translocator K10556 lsrC; AI-2 transport system permease protein
D YPTS_0574 inner-membrane translocator K10557 lsrD; AI-2 transport system permease protein
D YPTS_0576 ABC transporter related K10558 lsrA; AI-2 transport system ATP-binding protein
D YPTS_0578 carbohydrate kinase FGGY K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D YPTS_0577 transcriptional regulator, DeoR family K11531 lsrR; lsr operon transcriptional repressor
D YPTS_0572 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D YPTS_0571 Antibiotic biosynthesis monooxygenase K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D YPTS_2656 conserved hypothetical protein K20268 rhiA; rhizosphere induced protein
D YPTS_2915 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPTS_2071 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPTS_2072 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPTS_2913 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPTS_2914 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPTS_2073 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPTS_2918 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPTS_2074 ABC transporter related K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPTS_0241 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPTS_0242 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D YPTS_0243 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D YPTS_0244 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPTS_0245 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPTS_2592 autoinducer synthesis protein K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPTS_3394 autoinducer synthesis protein K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPTS_2593 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPTS_3395 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPTS_4050 periplasmic pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2]
D YPTS_2118 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPTS_0701 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPTS_3921 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPTS_0394 ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPTS_2214 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPTS_0975 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPTS_0523 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D YPTS_2173 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPTS_2335 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPTS_2174 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D YPTS_2175 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D YPTS_2176 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D YPTS_2177 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D YPTS_0555 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPTS_3066 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPTS_0554 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPTS_3065 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPTS_0553 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPTS_3064 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPTS_0552 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPTS_3063 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPTS_0551 ABC transporter related K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPTS_3062 ABC transporter related K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPTS_4202 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPTS_0297 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D YPTS_0507 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D YPTS_3870 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPTS_0970 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D YPTS_0724 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPTS_0236 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPTS_0065 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPTS_0869 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:ypb02030]
D YPTS_1354 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPTS_2646 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPTS_2480 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPTS_3173 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPTS_4146 methyl-accepting chemotaxis sensory transducer K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPTS_2491 methyl-accepting chemotaxis sensory transducer K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPTS_2479 methyl-accepting chemotaxis sensory transducer K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPTS_2507 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D YPTS_3830 extracellular solute-binding protein family 1 K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPTS_2632 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPTS_4004 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPTS_3366 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPTS_1632 periplasmic binding protein/LacI transcriptional regulator K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPTS_4058 extracellular solute-binding protein family 5 K12368 dppA; dipeptide transport system substrate-binding protein
D YPTS_2484 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPTS_2483 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D YPTS_2476 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPTS_2475 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D YPTS_2477 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPTS_2478 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPTS_3483 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPTS_1831 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPTS_3487 putative flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPTS_1825 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPTS_1824 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPTS_3488 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPTS_2486 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPTS_3454 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPTS_2485 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPTS_3453 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:ypb02040]
D YPTS_3485 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPTS_1833 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPTS_3484 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPTS_1832 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPTS_3483 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPTS_1831 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPTS_1830 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPTS_3482 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPTS_1829 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPTS_3481 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPTS_1828 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D YPTS_1827 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPTS_3457 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPTS_1826 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D YPTS_3456 putative flagellar biogenesis protein K02415 fliL; flagellar protein FliL
D YPTS_3487 putative flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPTS_1825 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPTS_1824 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPTS_3488 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPTS_1823 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPTS_3489 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPTS_1822 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPTS_3490 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPTS_1821 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPTS_3491 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPTS_1820 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPTS_1794 flagellar FlhE family protein K03516 flhE; flagellar protein FlhE
D YPTS_3493 type III secretion FHIPEP protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPTS_1793 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPTS_3492 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPTS_1792 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPTS_3477 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPTS_1798 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPTS_3476 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPTS_1799 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPTS_3475 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPTS_1800 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPTS_3474 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPTS_1801 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPTS_3473 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE
D YPTS_1802 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE
D YPTS_3472 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPTS_1803 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPTS_3471 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPTS_1804 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPTS_3470 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D YPTS_1805 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D YPTS_3469 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D YPTS_1806 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D YPTS_3468 peptidoglycan hydrolase K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPTS_1807 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPTS_3467 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YPTS_1808 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YPTS_3466 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPTS_1809 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPTS_3461 flagellin domain protein K02406 fliC; flagellin
D YPTS_3462 flagellin domain protein K02406 fliC; flagellin
D YPTS_1842 flagellin domain protein K02406 fliC; flagellin
D YPTS_3460 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D YPTS_1841 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D YPTS_3459 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPTS_1840 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPTS_1839 flagellar export chaperone K02423 fliT; flagellar protein FliT
D YPTS_2486 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPTS_3454 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPTS_2485 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPTS_3453 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPTS_3478 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPTS_1797 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPTS_3479 conserved hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPTS_1796 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPTS_1847 extracellular solute-binding protein family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D YPTS_1845 integrase domain protein SAM domain protein K02425 fliZ; regulator of sigma S factor FliZ
D YPTS_3562 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPTS_2488 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD
D YPTS_2487 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D YPTS_3712 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D YPTS_3486 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D YPTS_3455 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPTS_1843 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D YPTS_0788 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D YPTS_3839 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection [PATH:ypb05135]
D YPTS_3986 conserved repeat domain protein K13735 yeeJ; adhesin/invasin
D YPTS_4238 YadA domain protein K12341 yadA; adhesin YadA
D YPTS_4224 serine/threonine protein kinase K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1]
D YPTS_4265 cysteine protease domain protein, YopT-type K08599 yopT; YopT peptidase [EC:3.4.22.-]
D YPTS_4252 virulence determinant YopE K23473 yopE; outer membrane virulence protein YopE
D YPTS_4221 Protein-tyrosine phosphatase YopH K23474 yopH; tyrosine-protein phosphatase YopH [EC:3.1.3.48]
D YPTS_4274 secretion system effector C (SseC) family protein K23475 yopB; transloator
D YPTS_4273 YopD family protein K23476 yopD; transloator
D YPTS_4264 yop targeting protein YopK, YopQ K23477 yopQ; protein YopQ
D YPTS_4270 YopM; putative targeted effector protein K23478 yopM; outer membrane protein YopM
D YPTS_4223 peptidase C55 K08598 yopJ; YopJ protease family
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D YPTS_3986 conserved repeat domain protein K13735 yeeJ; adhesin/invasin
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ypb01501]
D YPTS_1537 porin Gram-negative type K09476 ompF; outer membrane pore protein F
D YPTS_1350 porin Gram-negative type K09475 ompC; outer membrane pore protein C
D YPTS_0995 AmpG-related permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPTS_2533 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPTS_2173 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPTS_2335 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPTS_2174 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D YPTS_2175 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D YPTS_2176 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D YPTS_2177 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D YPTS_0521 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_1026 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_1025 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_0522 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_3444 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_0523 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D YPTS_3541 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPTS_3951 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPTS_1154 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPTS_0709 penicillin-binding protein transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:ypb01502]
D YPTS_0717 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPTS_0399 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YPTS_0711 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPTS_0712 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPTS_0715 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ypb01503]
D YPTS_2519 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPTS_2518 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPTS_4066 sulfatase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPTS_1744 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPTS_2405 DegT/DnrJ/EryC1/StrS aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPTS_2404 glycosyl transferase family 2 K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPTS_2403 NAD-dependent epimerase/dehydratase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPTS_2402 polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPTS_2401 glycosyl transferase family 39 K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPTS_2400 small multidrug resistance protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPTS_2399 conserved hypothetical protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D YPTS_0498 integral membrane sensor signal transduction histidine kinase K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPTS_0499 two component transcriptional regulator, winged helix family K07771 basR; two-component system, OmpR family, response regulator BasR
D YPTS_2364 protein of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPTS_2349 extracellular solute-binding protein family 5 K19226 sapA; cationic peptide transport system substrate-binding protein
D YPTS_2350 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein
D YPTS_2351 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein
D YPTS_2352 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein
D YPTS_2353 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein
D YPTS_4028 Peptidase M10 serralysin K01406 prtC; serralysin [EC:3.4.24.40]
D YPTS_3099 copper resistance lipoprotein NlpE K06079 cutF; copper homeostasis protein (lipoprotein)
D YPTS_0070 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPTS_0071 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPTS_0450 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPTS_3144 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPTS_2382 ErfK/YbiS/YcfS/YnhG family protein K19236 ycfS; L,D-transpeptidase YcfS
D YPTS_0782 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPTS_0018 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPTS_3927 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPTS_0521 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_1026 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_1025 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_0522 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_3444 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_3541 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPTS_3111 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ypb01000]
C 01001 Protein kinases [BR:ypb01001]
D YPTS_1732 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPTS_4224 serine/threonine protein kinase K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1]
D YPTS_0959 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPTS_2519 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPTS_3959 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPTS_2308 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPTS_0070 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPTS_3301 integral membrane sensor signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPTS_2923 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPTS_0498 integral membrane sensor signal transduction histidine kinase K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPTS_2049 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPTS_3034 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPTS_3684 multi-sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPTS_2818 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPTS_2007 integral membrane sensor signal transduction histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPTS_4064 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPTS_1347 multi-sensor signal transduction histidine kinase K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPTS_1345 integral membrane sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPTS_0783 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPTS_1971 histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D YPTS_3985 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPTS_0024 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPTS_1284 signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPTS_2986 integral membrane sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPTS_2484 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPTS_0335 multi-sensor hybrid histidine kinase K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
C 01009 Protein phosphatases and associated proteins [BR:ypb01009]
D YPTS_0077 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPTS_1038 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YPTS_0608 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ypb01002]
D YPTS_0642 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D YPTS_3177 peptidase A24A domain protein K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPTS_3508 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPTS_1355 peptidase A26 omptin K08566 pla; plasminogen activator [EC:3.4.23.48]
D YPTS_3018 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D YPTS_2940 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPTS_0093 ABC transporter related K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPTS_1401 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPTS_2372 NLP/P60 protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPTS_2398 NLP/P60 protein K13695 nlpC; probable lipoprotein NlpC
D YPTS_2707 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPTS_3687 ferredoxin-dependent glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPTS_4184 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPTS_1173 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPTS_4223 peptidase C55 K08598 yopJ; YopJ protease family
D YPTS_0985 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D YPTS_4265 cysteine protease domain protein, YopT-type K08599 yopT; YopT peptidase [EC:3.4.22.-]
D YPTS_2382 ErfK/YbiS/YcfS/YnhG family protein K19236 ycfS; L,D-transpeptidase YcfS
D YPTS_1533 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D YPTS_3391 Abortive infection protein K07052 K07052; CAAX protease family protein
D YPTS_1250 Abortive infection protein K07052 K07052; CAAX protease family protein
D YPTS_1541 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPTS_4030 peptidase M3A and M3B thimet/oligopeptidase F K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D YPTS_4028 Peptidase M10 serralysin K01406 prtC; serralysin [EC:3.4.24.40]
D YPTS_3741 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPTS_1889 bacteriophage P7 related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPTS_3148 peptidase M16 domain protein K01407 ptrA; protease III [EC:3.4.24.55]
D YPTS_4046 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D YPTS_0562 peptidase M17 leucyl aminopeptidase domain protein K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPTS_2960 peptidase M17 leucyl aminopeptidase domain protein K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPTS_2879 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPTS_3437 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPTS_2521 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPTS_0939 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPTS_0912 amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPTS_2104 Peptidase M23 K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPTS_3124 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPTS_0829 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPTS_0284 peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D YPTS_3317 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D YPTS_2309 peptidase M32 carboxypeptidase Taq metallopeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D YPTS_0504 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPTS_2450 HtpX domain protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D YPTS_3331 peptidase M48 Ste24p K07387 K07387; metalloprotease [EC:3.4.24.-]
D YPTS_2895 peptidase M48 Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D YPTS_3116 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D YPTS_2726 peptidase U6 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPTS_1730 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase
D YPTS_2314 peptidase S1 and S6 chymotrypsin/Hap K04775 ydgD; protease YdgD [EC:3.4.21.-]
D YPTS_0782 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPTS_3697 protease Do K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D YPTS_3698 periplasmic serine protease DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D YPTS_1780 peptidase S9A prolyl oligopeptidase domain protein beta-propeller K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D YPTS_1448 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPTS_1151 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPTS_1305 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPTS_1351 beta-lactamase K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPTS_0500 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPTS_1000 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D YPTS_1002 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D YPTS_1557 conserved hypothetical protein K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D YPTS_0393 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPTS_3002 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YPTS_1782 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPTS_2451 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D YPTS_2151 signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-]
D YPTS_2207 Peptidase S49 domain protein K04774 sohB; serine protease SohB [EC:3.4.21.-]
D YPTS_3974 Rhomboid family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D YPTS_0100 20S proteasome A and B subunits K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D YPTS_0965 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPTS_2926 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YPTS_0524 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D YPTS_0525 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D YPTS_3727 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein
D YPTS_3745 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein
D YPTS_1338 proteinase inhibitor I11 ecotin K08276 eco; ecotin
D YPTS_1123 alpha-2-macroglobulin domain protein K06894 yfhM; alpha-2-macroglobulin
D YPTS_0457 HflC protein K04087 hflC; modulator of FtsH protease HflC
D YPTS_0456 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:ypb01003]
D YPTS_2031 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPTS_3981 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D YPTS_3682 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPTS_1122 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPTS_0770 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPTS_3951 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPTS_0191 glycosyl transferase, WecB/TagA/CpsF family K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPTS_0189 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPTS_0180 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPTS_2586 glycosyl transferase family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D YPTS_2001 glycosyl transferase family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ypb01005]
D YPTS_3111 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPTS_3110 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPTS_0721 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPTS_3113 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPTS_1081 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPTS_1523 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPTS_2582 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D YPTS_2105 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPTS_3787 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPTS_1402 phosphoesterase PA-phosphatase related K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPTS_0054 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPTS_2401 glycosyl transferase family 39 K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPTS_1744 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPTS_2364 protein of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPTS_4066 sulfatase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPTS_2067 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPTS_1527 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPTS_3708 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPTS_3707 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPTS_0055 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPTS_0053 glycosyl transferase family 2 K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D YPTS_0056 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPTS_0579 lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D YPTS_0926 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPTS_1056 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPTS_1058 histidinol-phosphate phosphatase family protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPTS_3092 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPTS_3550 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPTS_0057 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPTS_1048 glycosyl transferase family 2 K24673 wbyI; glycosyltransferase [EC:2.4.1.-]
D YPTS_0190 WzyE family protein K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D YPTS_0180 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ypb01011]
D YPTS_3699 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPTS_0290 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPTS_0716 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPTS_0713 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPTS_0710 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPTS_0717 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPTS_0399 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YPTS_0133 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPTS_0712 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPTS_0715 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPTS_3556 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPTS_1452 phosphoesterase PA-phosphatase related K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPTS_2084 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D YPTS_3951 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPTS_0770 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPTS_1122 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPTS_1154 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPTS_0709 penicillin-binding protein transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPTS_1448 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPTS_1151 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPTS_0500 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPTS_1351 beta-lactamase K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPTS_1305 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPTS_3682 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPTS_2382 ErfK/YbiS/YcfS/YnhG family protein K19236 ycfS; L,D-transpeptidase YcfS
D YPTS_1533 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D YPTS_2726 peptidase U6 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPTS_2372 NLP/P60 protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPTS_1401 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPTS_2104 Peptidase M23 K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPTS_3741 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPTS_1889 bacteriophage P7 related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPTS_0617 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPTS_3143 MltA domain protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D YPTS_2124 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPTS_2779 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPTS_3360 Lytic transglycosylase catalytic K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D YPTS_3086 Lytic transglycosylase catalytic K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D YPTS_2420 Lytic transglycosylase catalytic K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D YPTS_2991 Lytic transglycosylase catalytic K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D YPTS_2555 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D YPTS_1152 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPTS_0450 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPTS_3144 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPTS_2440 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPTS_0738 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPTS_2381 LPP repeat-containing protein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:ypb01004]
D YPTS_1588 putative acyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPTS_2560 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPTS_2561 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPTS_2026 3-Oxoacyl-(acyl-carrier-protein (ACP)) synthase III domain protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPTS_2721 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPTS_1580 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPTS_1554 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPTS_2557 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPTS_2559 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPTS_1581 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPTS_1556 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPTS_1579 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPTS_3112 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPTS_4200 short-chain alcohol dehydrogenase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPTS_1076 lipolytic protein G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPTS_1017 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPTS_2189 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D YPTS_1006 thioesterase superfamily protein K12500 tesC; thioesterase III [EC:3.1.2.-]
D YPTS_1712 Beta-ketoacyl synthase K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase
D YPTS_1713 amino acid adenylation domain protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase
D YPTS_0332 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPTS_2118 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPTS_0701 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPTS_0391 phospholipid/glycerol acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPTS_2562 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPTS_3558 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPTS_3532 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ypb01008]
D YPTS_1725 4'-phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPTS_1712 Beta-ketoacyl synthase K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase
D YPTS_1713 amino acid adenylation domain protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase
D YPTS_1709 AMP-dependent synthetase and ligase K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-]
D YPTS_3434 amino acid adenylation domain protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D YPTS_1711 thiazolinyl imide reductase K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component
D YPTS_3432 thiazolinyl imide reductase K12241 pchG; pyochelin biosynthesis protein PchG
D YPTS_1710 Thioesterase K05374 irp4; yersiniabactin synthetase, thioesterase component
C 01006 Prenyltransferases [BR:ypb01006]
D YPTS_0981 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPTS_0493 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPTS_3118 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPTS_0452 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPTS_0098 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPTS_0390 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPTS_0989 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:ypb01007]
D YPTS_2806 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPTS_1179 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPTS_0764 glutamyl-tRNA synthetase class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPTS_2360 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPTS_3939 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPTS_1083 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPTS_2088 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPTS_1644 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPTS_0641 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPTS_0560 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPTS_1160 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPTS_3294 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPTS_2095 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPTS_1538 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPTS_2949 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPTS_4133 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPTS_4134 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPTS_1505 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPTS_3098 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPTS_2416 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPTS_0861 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPTS_2412 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPTS_2411 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPTS_1536 aminotransferase class I and II K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPTS_4124 aminotransferase class I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPTS_2684 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPTS_2797 aminotransferase class I and II K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D YPTS_0400 aminotransferase class I and II K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPTS_0914 aminotransferase class I and II K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D YPTS_1669 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPTS_0058 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPTS_1262 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPTS_2276 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_2826 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPTS_3924 succinylornithine transaminase family K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPTS_2011 succinylornithine transaminase family K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D YPTS_2916 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPTS_1260 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPTS_0774 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPTS_0145 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPTS_1515 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPTS_0911 aminotransferase class V K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPTS_2405 DegT/DnrJ/EryC1/StrS aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPTS_0187 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ypb00194]
D YPTS_4181 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPTS_4180 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPTS_4179 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPTS_4178 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPTS_4177 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPTS_4176 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPTS_4175 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YPTS_4174 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPTS_4173 ATP synthase I chain K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ypb03000]
D YPTS_1903 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPTS_2247 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D YPTS_0412 transcriptional regulator, AraC family K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D YPTS_0411 transcriptional regulator, AraC family K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D YPTS_3044 transcriptional regulator, AraC family K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D YPTS_1714 transcriptional regulator, AraC family K05372 ybtA; AraC family transcriptional regulator
D YPTS_0621 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPTS_0069 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPTS_3138 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D YPTS_0153 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D YPTS_0263 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D YPTS_0638 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D YPTS_0126 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D YPTS_3323 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPTS_0700 transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D YPTS_2211 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D YPTS_2628 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D YPTS_0084 transcriptional regulator, LysR family K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D YPTS_3735 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D YPTS_0140 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D YPTS_1450 transcriptional regulator, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D YPTS_3975 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D YPTS_3196 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D YPTS_0838 transcriptional regulator, DeoR family K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D YPTS_3216 transcriptional regulator, LacI family K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D YPTS_3406 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_1729 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_4104 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_2629 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_2279 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_3626 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_3166 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_0102 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D YPTS_0704 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D YPTS_3721 transcriptional regulator, LacI family K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D YPTS_2374 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D YPTS_3997 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D YPTS_2664 transcriptional regulator, LacI family K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D YPTS_0547 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D YPTS_2022 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D YPTS_1958 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPTS_2254 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPTS_2134 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D YPTS_0742 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D YPTS_1405 GntR domain protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D YPTS_3665 regulatory protein GntR HTH K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D YPTS_2917 transcriptional regulator, GntR family with aminotransferase domain protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D YPTS_1277 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D YPTS_1027 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D YPTS_0045 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D YPTS_2365 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D YPTS_0129 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D YPTS_1293 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D YPTS_4169 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D YPTS_1500 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPTS_2500 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPTS_1011 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D YPTS_2593 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPTS_3395 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPTS_3972 ATP-dependent transcriptional regulator, MalT-like, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D YPTS_0899 transcriptional regulator, MarR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D YPTS_1071 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPTS_3863 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D YPTS_1182 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D YPTS_0394 ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPTS_3840 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D YPTS_2441 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D YPTS_3921 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPTS_2300 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D YPTS_2968 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D YPTS_0460 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D YPTS_0820 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D YPTS_2108 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D YPTS_0291 bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPTS_3765 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPTS_0618 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D YPTS_1121 putative transcriptional regulator, Nlp K07724 ner; Ner family transcriptional regulator
D YPTS_0491 putative transcriptional regulator, Nlp K07724 ner; Ner family transcriptional regulator
D YPTS_0692 extracellular solute-binding protein family 5 K11925 sgrR; SgrR family transcriptional regulator
D YPTS_0610 transcriptional regulator, XRE family K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPTS_3247 transcriptional regulator, XRE family K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPTS_2270 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D YPTS_2267 sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D YPTS_4033 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator
D YPTS_1253 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D YPTS_0107 methionine repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D YPTS_1854 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPTS_0997 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D YPTS_4257 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPTS_0279 transcriptional acivator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D YPTS_0489 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D YPTS_1175 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D YPTS_2261 ROK family protein K15545 mlc; transcriptional regulator of PTS gene
D YPTS_4140 mannitol repressor, MtlR K02562 mtlR; mannitol operon repressor
D YPTS_2339 transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D YPTS_2890 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D YPTS_2348 sigma54 specific transcriptional regulator, Fis family K03974 pspF; psp operon transcriptional activator
D YPTS_2345 phage shock protein C, PspC K03973 pspC; phage shock protein C
D YPTS_0577 transcriptional regulator, DeoR family K11531 lsrR; lsr operon transcriptional repressor
D YPTS_3724 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D YPTS_1706 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D YPTS_1206 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D YPTS_3243 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D YPTS_3341 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D YPTS_0765 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D YPTS_0974 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D YPTS_0945 transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
D YPTS_0706 MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:ypb03021]
D YPTS_3865 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPTS_0304 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPTS_0305 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPTS_0037 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YPTS_3562 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPTS_0810 RNA polymerase, sigma 70 subunit, RpoD family K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D YPTS_3008 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D YPTS_0239 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D YPTS_3712 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D YPTS_3455 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPTS_1843 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPTS_0682 SNF2-related protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D YPTS_0509 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D YPTS_0977 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D YPTS_0298 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D YPTS_3691 Glutathione S-transferase domain protein K03599 sspA; stringent starvation protein A
D YPTS_3690 Stringent starvation protein B K03600 sspB; stringent starvation protein B
D YPTS_3007 anti sigma-E protein, RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
D YPTS_3006 sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D YPTS_3005 positive regulator of sigma E, RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC
D YPTS_0765 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D YPTS_0501 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D YPTS_3961 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D YPTS_0179 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPTS_3103 transcriptional antiterminator, Rof K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:ypb03019]
D YPTS_2568 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPTS_3748 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPTS_3001 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPTS_0461 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPTS_0444 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPTS_0177 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPTS_1294 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPTS_0516 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPTS_0217 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPTS_0788 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPTS_0514 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPTS_0179 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPTS_0077 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPTS_0635 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPTS_0431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPTS_0453 RNA chaperone Hfq K03666 hfq; host factor-I protein
D YPTS_2907 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPTS_0763 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D YPTS_3158 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPTS_0862 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D YPTS_3753 diguanylate cyclase/phosphodiesterase K18765 csrD; RNase E specificity factor CsrD
D YPTS_0097 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D YPTS_0558 protein of unknown function DUF1260 K09893 rraB; regulator of ribonuclease activity B
D YPTS_3715 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D YPTS_2317 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D YPTS_0769 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:ypb03011]
D YPTS_1518 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YPTS_3123 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YPTS_3884 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YPTS_3866 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YPTS_3873 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YPTS_0468 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YPTS_3896 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YPTS_3876 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YPTS_3692 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YPTS_3891 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YPTS_3867 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YPTS_3897 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YPTS_3868 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YPTS_3877 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YPTS_0513 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YPTS_0870 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YPTS_3881 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YPTS_0470 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YPTS_3886 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YPTS_0639 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YPTS_3560 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YPTS_0300 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YPTS_3887 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YPTS_3890 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YPTS_3889 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D YPTS_3878 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YPTS_3875 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YPTS_0471 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YPTS_0301 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YPTS_0299 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YPTS_0302 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPTS_3693 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YPTS_3880 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YPTS_3871 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YPTS_3883 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YPTS_3864 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YPTS_3874 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YPTS_0873 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YPTS_2413 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YPTS_0494 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YPTS_3885 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YPTS_3888 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D YPTS_3879 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YPTS_0495 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YPTS_0049 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YPTS_3882 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YPTS_3872 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D YPTS_0105 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPTS_1024 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPTS_2563 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YPTS_0050 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YPTS_4205 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YPTS_2414 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YPTS_3869 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPTS_1023 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPTS_1391 ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YPTS_R0084 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0085 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0089 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0088 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0090 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0087 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0092 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0094 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0093 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0091 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0096 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0097 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ypb03009]
D YPTS_3001 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPTS_1732 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPTS_0444 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPTS_3000 GTP-binding protein Era K03595 era; GTPase
D YPTS_0497 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D YPTS_0765 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D YPTS_0509 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D YPTS_0977 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D YPTS_0298 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D YPTS_1393 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D YPTS_0656 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D YPTS_3859 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D YPTS_0594 Methyltransferase small domain protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D YPTS_0235 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D YPTS_3339 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D YPTS_4172 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPTS_0707 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D YPTS_3677 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D YPTS_4029 protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D YPTS_1749 Methyltransferase type 11 K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D YPTS_0462 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D YPTS_0503 ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D YPTS_2647 protein of unknown function DUF890 K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D YPTS_3655 methyltransferase small K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D YPTS_1155 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D YPTS_1569 PUA domain containing protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D YPTS_4031 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D YPTS_1546 putative RNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D YPTS_3136 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D YPTS_2953 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D YPTS_1463 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D YPTS_0661 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPTS_2204 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D YPTS_2566 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D YPTS_0885 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YPTS_2511 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D YPTS_1109 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D YPTS_0896 tRNA/rRNA methyltransferase (SpoU) K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPTS_0596 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D YPTS_2081 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D YPTS_0871 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D YPTS_1511 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D YPTS_3763 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D YPTS_2728 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D YPTS_2520 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D YPTS_1110 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D YPTS_2568 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPTS_3748 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPTS_3342 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D YPTS_1776 DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D YPTS_0516 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPTS_3011 DEAD/DEAH box helicase domain protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D YPTS_0443 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPTS_2946 small GTP-binding protein K03977 engA; GTPase
D YPTS_0455 GTP-binding proten HflX K03665 hflX; GTPase
D YPTS_3853 SUA5/yciO/yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPTS_0036 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPTS_0511 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D YPTS_0508 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D YPTS_1084 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
D YPTS_1156 iojap-like protein K09710 ybeB; ribosome-associated protein
D YPTS_1168 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D YPTS_0502 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein
D YPTS_4142 conserved hypothetical protein K14762 yibL; ribosome-associated protein
D YPTS_3728 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein
D YPTS_1551 ribosome modulation factor K03812 rmf; ribosome modulation factor
D YPTS_3713 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
D YPTS_0883 sigma 54 modulation protein/ribosomal protein S30EA K05809 raiA; ribosome-associated inhibitor A
D YPTS_2055 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D YPTS_2564 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:ypb03016]
D YPTS_3555 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D YPTS_2806 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPTS_3098 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPTS_0641 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPTS_1160 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPTS_1644 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPTS_1179 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPTS_2088 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPTS_3294 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPTS_2095 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPTS_0861 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPTS_1538 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPTS_2416 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPTS_1505 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPTS_1083 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPTS_0560 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPTS_2949 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPTS_2412 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPTS_2411 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPTS_2360 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPTS_3939 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPTS_0029 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D YPTS_2537 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPTS_3357 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D YPTS_3097 protein of unknown function UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D YPTS_2713 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D YPTS_0512 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D YPTS_0806 tRNA pseudouridine synthase D TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D YPTS_2128 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPTS_2967 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPTS_3853 SUA5/yciO/yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPTS_0452 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPTS_4201 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D YPTS_4171 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPTS_2153 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPTS_0477 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPTS_4204 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D YPTS_2369 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D YPTS_0043 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D YPTS_2227 exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D YPTS_2119 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D YPTS_0767 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D YPTS_0612 ABC transporter related K06020 ettA; energy-dependent translational throttle protein EttA
D YPTS_4133 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPTS_4134 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPTS_0764 glutamyl-tRNA synthetase class Ic K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPTS_1068 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D YPTS_2992 CMP/dCMP deaminase zinc-binding K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D YPTS_0395 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D YPTS_3764 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D YPTS_1303 dihydrouridine synthase DuS K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D YPTS_1170 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D YPTS_2092 methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D YPTS_1933 Methyltransferase type 12 K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D YPTS_2091 methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D YPTS_1529 Methyltransferase type 11 K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D YPTS_0131 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D YPTS_0872 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D YPTS_0896 tRNA/rRNA methyltransferase (SpoU) K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPTS_0035 tRNA/rRNA methyltransferase (SpoU) K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D YPTS_2969 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D YPTS_0068 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D YPTS_3010 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D YPTS_3129 pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D YPTS_0661 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPTS_2513 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPTS_2330 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D YPTS_0229 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPTS_3898 sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D YPTS_3899 sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPTS_3900 sulfur relay protein TusD/DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPTS_1571 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPTS_2965 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D YPTS_3305 conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D YPTS_2722 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D YPTS_0968 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D YPTS_1007 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPTS_0791 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPTS_0790 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPTS_3133 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPTS_0447 iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D YPTS_0969 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D YPTS_0984 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPTS_3105 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D YPTS_2883 protein of unknown function DUF699 ATPase putative K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D YPTS_2116 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D YPTS_3559 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D YPTS_0449 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D YPTS_3142 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D YPTS_0461 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPTS_0514 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ypb03012]
D YPTS_2220 translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1
D YPTS_0510 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YPTS_2415 initiation factor 3 K02520 infC; translation initiation factor IF-3
D YPTS_3908 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D YPTS_3122 translation elongation factor Ts K02357 tsf; elongation factor Ts
D YPTS_3894 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPTS_0296 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPTS_3895 translation elongation factor G K02355 fusA; elongation factor G
D YPTS_4155 selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D YPTS_2063 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D YPTS_3120 ribosome recycling factor K02838 frr; ribosome recycling factor
D YPTS_2064 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D YPTS_2056 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D YPTS_1495 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D YPTS_0434 translation elongation factor P K02356 efp; elongation factor P
D YPTS_1408 elongation factor P-like protein YeiP K02356 efp; elongation factor P
D YPTS_0440 lysyl-tRNA synthetase-related protein GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D YPTS_0433 lysine 2,3-aminomutase YodO family protein K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D YPTS_2724 protein of unknown function DUF462 K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D YPTS_3295 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D YPTS_0597 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D YPTS_3862 protein of unknown function DUF331 K09890 arfA; alternative ribosome-rescue factor
D YPTS_3100 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:ypb03110]
D YPTS_1494 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D YPTS_0887 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D YPTS_1001 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D YPTS_0099 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D YPTS_1038 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YPTS_0635 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPTS_2963 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA
D YPTS_2911 putative chaperone protein K04046 yegD; hypothetical chaperone protein
D YPTS_0431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPTS_0636 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YPTS_0660 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein
D YPTS_2964 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D YPTS_3957 Hsp33 protein K04083 hslO; molecular chaperone Hsp33
D YPTS_1218 GrpE protein K03687 GRPE; molecular chaperone GrpE
D YPTS_4121 heat shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA
D YPTS_4122 heat shock protein Hsp20 K04081 ibpB; molecular chaperone IbpB
D YPTS_3956 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D YPTS_0430 chaperonin Cpn10 K04078 groES; chaperonin GroES
D YPTS_0782 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPTS_0504 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPTS_4174 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPTS_2444 Pili assembly chaperone, N-terminal K07346 fimC; fimbrial chaperone protein
D YPTS_2459 pilus assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPTS_0170 Pili assembly chaperone, N-terminal K07346 fimC; fimbrial chaperone protein
D YPTS_0065 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPTS_0072 protein of unknown function Spy-related K06006 cpxP; periplasmic protein CpxP/Spy
D YPTS_1283 conserved hypothetical protein K07803 zraP; zinc resistance-associated protein
D YPTS_3051 conserved hypothetical protein K19778 hdeB; acid stress chaperone HdeB
D YPTS_0843 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPTS_2790 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPTS_1181 Glycoside hydrolase, family 20, catalytic core K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D YPTS_3927 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPTS_1082 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D YPTS_1004 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D YPTS_3902 FKBP-type peptidyl-prolyl isomerase domain protein K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D YPTS_0474 peptidylprolyl isomerase FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D YPTS_0643 peptidylprolyl isomerase FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D YPTS_3904 peptidylprolyl isomerase FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D YPTS_0173 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D YPTS_0658 SurA domain protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D YPTS_0178 thioredoxin K03671 TXN; thioredoxin
D YPTS_0895 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D YPTS_1074 Thioredoxin domain protein K05838 ybbN; putative thioredoxin
D YPTS_1455 glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1
D YPTS_0064 glutaredoxin 3 K03676 grxC; glutaredoxin 3
D YPTS_2370 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D YPTS_0018 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPTS_2132 Disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D YPTS_3297 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPTS_0425 cytochrome c biogenesis protein transmembrane region K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D YPTS_2740 periplasmic protein thiol--disulphide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:ypb04131]
D YPTS_2954 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPTS_2146 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPTS_1244 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPTS_2380 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPTS_2107 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPTS_1038 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:ypb04121]
C 03051 Proteasome [BR:ypb03051]
D YPTS_1038 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:ypb03032]
D YPTS_3083 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPTS_1903 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPTS_0318 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D YPTS_1003 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YPTS_2410 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D YPTS_1519 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D YPTS_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D YPTS_0398 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPTS_3561 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPTS_0403 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPTS_3108 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPTS_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPTS_0561 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPTS_1158 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPTS_2553 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPTS_3082 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPTS_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPTS_0595 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPTS_1783 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPTS_3109 ribonuclease HII/HIII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPTS_0019 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPTS_0039 NAD-dependent DNA ligase adenylation K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPTS_2811 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPTS_2258 DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein
D YPTS_1904 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPTS_3942 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPTS_3040 SeqA family protein K03645 seqA; negative modulator of initiation of replication
D YPTS_2897 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D YPTS_1343 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPTS_0004 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPTS_3533 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPTS_3536 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPTS_2210 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPTS_2155 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ypb03036]
D YPTS_1903 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPTS_3001 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPTS_2169 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D YPTS_0318 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D YPTS_1003 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YPTS_2410 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D YPTS_1519 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D YPTS_0621 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPTS_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D YPTS_3680 phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein
D YPTS_1568 hemimethylated DNA binding protein K11940 hspQ; heat shock protein HspQ
D YPTS_2641 Ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein
D YPTS_3765 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPTS_0453 RNA chaperone Hfq K03666 hfq; host factor-I protein
D YPTS_3323 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPTS_1500 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPTS_2500 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPTS_1390 37 kDa nucleoid-associated protein K06899 ndpA; nucleoid-associated protein
D YPTS_1532 chromosome segregation and condensation protein MukB domain protein K03632 mukB; chromosome partition protein MukB
D YPTS_1531 chromosome segregation and condensation protein MukE K03804 mukE; chromosome partition protein MukE
D YPTS_1530 chromosome segregation and condensation protein MukF K03633 mukF; chromosome partition protein MukF
D YPTS_0719 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YPTS_0803 Septum formation initiator K05589 ftsB; cell division protein FtsB
D YPTS_0237 Type II (General) Secretory Pathway (IISP) Family protein K09812 ftsE; cell division transport system ATP-binding protein
D YPTS_0709 penicillin-binding protein transpeptidase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPTS_1501 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D YPTS_0708 cell division protein FtsL K03586 ftsL; cell division protein FtsL
D YPTS_0101 cell division protein FtsN K03591 ftsN; cell division protein FtsN
D YPTS_0718 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ
D YPTS_0714 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YPTS_0238 protein insertion ABC transporter, inner membrane subunit FtsX K09811 ftsX; cell division transport system permease protein
D YPTS_0720 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPTS_2812 cell division protein ZipA K03528 zipA; cell division protein ZipA
D YPTS_3319 protein of unknown function DUF710 K09888 zapA; cell division protein ZapA
D YPTS_0092 protein of unknown function DUF904 K09892 zapB; cell division protein ZapB
D YPTS_1544 protein of unknown function DUF1379 K18657 zapC; cell division protein ZapC
D YPTS_0729 protein of unknown function DUF1342 K18778 zapD; cell division protein ZapD
D YPTS_3694 AFG1-family ATPase K06916 zapE; cell division protein ZapE
D YPTS_0473 Opacity-associated protein A K07269 ytfB; cell division protein YtfB
D YPTS_0450 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPTS_3144 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPTS_0521 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_1026 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_2122 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D YPTS_2121 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D YPTS_2120 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D YPTS_1560 cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA
D YPTS_0045 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D YPTS_3040 SeqA family protein K03645 seqA; negative modulator of initiation of replication
D YPTS_3752 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D YPTS_3751 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D YPTS_3750 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D YPTS_1153 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D YPTS_4258 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D YPTS_4257 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPTS_3533 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPTS_3536 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPTS_4171 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPTS_4172 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPTS_0205 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D YPTS_3298 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D YPTS_1645 conserved hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPTS_3605 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D YPTS_0020 GTP-binding protein HSR1-related K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:ypb03400]
D YPTS_2299 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D YPTS_3027 DNA photolyase FAD-binding K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D YPTS_3017 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YPTS_3358 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPTS_2230 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPTS_0725 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D YPTS_0046 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPTS_0069 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPTS_1836 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPTS_4132 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPTS_0051 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPTS_2158 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPTS_1432 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPTS_0316 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D YPTS_3296 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPTS_0039 NAD-dependent DNA ligase adenylation K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPTS_2811 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPTS_0019 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPTS_0402 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D YPTS_1266 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D YPTS_1868 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D YPTS_0207 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPTS_0304 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPTS_0305 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPTS_3865 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPTS_0037 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YPTS_2527 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPTS_0811 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D YPTS_0451 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D YPTS_3159 DNA mismatch repair endonuclease mutH K03573 mutH; DNA mismatch repair protein MutH
D YPTS_1681 Exonuclease domain protein K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPTS_2942 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPTS_0982 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YPTS_3108 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPTS_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPTS_0561 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPTS_1158 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPTS_2553 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPTS_3082 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPTS_1035 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPTS_0595 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPTS_1783 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPTS_0403 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPTS_1904 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPTS_3942 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPTS_3147 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPTS_3149 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPTS_3146 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YPTS_0859 recA protein K03553 recA; recombination protein RecA
D YPTS_2099 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YPTS_2100 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPTS_2098 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPTS_0104 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPTS_0469 primosomal replication protein N K02686 priB; primosomal replication protein N
D YPTS_1031 Primosomal replication priB and priC K04067 priC; primosomal replication protein N''
D YPTS_0956 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
D YPTS_0957 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D YPTS_0609 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D YPTS_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D YPTS_0034 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPTS_2999 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D YPTS_1037 recombination protein RecR K06187 recR; recombination protein RecR
D YPTS_1216 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D YPTS_0954 putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC
D YPTS_2604 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D YPTS_1392 type III restriction protein res subunit K19789 radD; DNA repair protein RadD
D YPTS_3926 protein of unknown function DUF853 NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D YPTS_1343 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPTS_0004 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPTS_2210 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPTS_0318 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D YPTS_1003 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YPTS_3765 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPTS_2410 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D YPTS_1519 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D YPTS_0217 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPTS_2169 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D YPTS_0938 UMUC domain protein DNA-repair protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D YPTS_0393 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPTS_0683 DNA polymerase B region K02336 polB; DNA polymerase II [EC:2.7.7.7]
D YPTS_2571 DinI family protein K12149 dinI; DNA-damage-inducible protein I
D YPTS_0860 regulatory protein RecX K03565 recX; regulatory protein
D YPTS_0175 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D YPTS_1564 UvrD/REP helicase K03658 helD; DNA helicase IV [EC:5.6.2.4]
D YPTS_1333 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPTS_2115 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPTS_3074 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPTS_1341 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPTS_3075 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPTS_1340 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:ypb03029]
D YPTS_0510 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YPTS_2415 initiation factor 3 K02520 infC; translation initiation factor IF-3
D YPTS_3122 translation elongation factor Ts K02357 tsf; elongation factor Ts
D YPTS_3894 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPTS_0296 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPTS_3895 translation elongation factor G K02355 fusA; elongation factor G
D YPTS_3000 GTP-binding protein Era K03595 era; GTPase
D YPTS_2360 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPTS_1160 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPTS_2095 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPTS_2088 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPTS_0403 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPTS_3115 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D YPTS_0635 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPTS_1218 GrpE protein K03687 GRPE; molecular chaperone GrpE
D YPTS_0431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPTS_0430 chaperonin Cpn10 K04078 groES; chaperonin GroES
D YPTS_0636 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YPTS_2128 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPTS_2967 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPTS_2964 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D YPTS_2370 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D YPTS_1645 conserved hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPTS_0989 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPTS_4202 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPTS_1038 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ypb02000]
D YPTS_1715 ABC transporter related K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPTS_3429 ABC transporter related K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPTS_1716 ABC transporter related K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPTS_3428 ABC transporter related K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPTS_1522 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPTS_1012 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPTS_1013 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPTS_2239 type I secretion system ATPase K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPTS_2241 type I secretion system ATPase K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPTS_0093 ABC transporter related K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPTS_1138 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPTS_1733 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D YPTS_0121 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPTS_1497 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPTS_1498 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPTS_1491 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPTS_2821 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPTS_1547 ABC transporter related K15738 uup; ABC transport system ATP-binding/permease protein
D YPTS_2835 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPTS_0078 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPTS_2834 sulfate ABC transporter, inner membrane subunit K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPTS_2833 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPTS_2832 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPTS_1255 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YPTS_0080 extracellular solute-binding protein family 1 K02020 modA; molybdate transport system substrate-binding protein
D YPTS_1256 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D YPTS_1257 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPTS_1252 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein
D YPTS_3914 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D YPTS_3912 binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein
D YPTS_3913 ABC transporter related K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPTS_3795 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPTS_3793 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D YPTS_3792 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPTS_2780 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D YPTS_2876 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D YPTS_2781 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D YPTS_2875 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D YPTS_2874 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPTS_2782 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPTS_0687 thiamine ABC transporter, periplasmic binding protein K02064 thiB; thiamine transport system substrate-binding protein
D YPTS_0686 thiamine ABC transporter, inner membrane subunit K02063 thiP; thiamine transport system permease protein
D YPTS_0685 ABC transporter, ATPase subunit, ThiQ subfamily K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPTS_1458 extracellular solute-binding protein family 1 K11073 potF; putrescine transport system substrate-binding protein
D YPTS_1461 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein
D YPTS_1460 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D YPTS_1459 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPTS_2915 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPTS_2071 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPTS_2072 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPTS_2913 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPTS_2914 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPTS_2073 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPTS_2918 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPTS_2074 ABC transporter related K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPTS_3078 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPTS_3077 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D YPTS_3076 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPTS_1324 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPTS_1325 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D YPTS_1327 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D YPTS_1326 ABC transporter related K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPTS_2286 ABC transporter, periplasmic substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D YPTS_2287 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D YPTS_2288 ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D YPTS_3830 extracellular solute-binding protein family 1 K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPTS_3831 binding-protein-dependent transport systems inner membrane component K10109 malF; maltose/maltodextrin transport system permease protein
D YPTS_3832 binding-protein-dependent transport systems inner membrane component K10110 malG; maltose/maltodextrin transport system permease protein
D YPTS_3828 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_2615 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_3224 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_1965 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_3628 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_0534 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_3223 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPTS_3222 binding-protein-dependent transport systems inner membrane component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPTS_3221 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPTS_2244 periplasmic binding protein/LacI transcriptional regulator K10537 araF; L-arabinose transport system substrate-binding protein
D YPTS_2246 inner-membrane translocator K10538 araH; L-arabinose transport system permease protein
D YPTS_2245 ABC transporter related K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPTS_2436 extracellular solute-binding protein family 1 K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPTS_2433 binding-protein-dependent transport systems inner membrane component K10193 togM; oligogalacturonide transport system permease protein
D YPTS_2434 binding-protein-dependent transport systems inner membrane component K10194 togN; oligogalacturonide transport system permease protein
D YPTS_2435 ABC transporter related K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPTS_1632 periplasmic binding protein/LacI transcriptional regulator K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPTS_1634 inner-membrane translocator K10541 mglC; methyl-galactoside transport system permease protein
D YPTS_1633 ABC transporter related K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPTS_4107 D-xylose ABC transporter, periplasmic substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPTS_4105 inner-membrane translocator K10544 xylH; D-xylose transport system permease protein
D YPTS_4106 D-xylose ABC transporter, ATPase subunit K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPTS_2632 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPTS_4004 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPTS_3366 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPTS_2630 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D YPTS_4005 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D YPTS_3364 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D YPTS_2631 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPTS_3365 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPTS_4006 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPTS_0136 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPTS_0139 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein
D YPTS_0138 inner-membrane translocator K23509 ytfT; galactofuranose transport system permease protein
D YPTS_0137 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPTS_2281 periplasmic binding protein/LacI transcriptional regulator K17202 eryG; erythritol transport system substrate-binding protein
D YPTS_0847 periplasmic binding protein/LacI transcriptional regulator K17202 eryG; erythritol transport system substrate-binding protein
D YPTS_2282 inner-membrane translocator K17203 eryF; erythritol transport system permease protein
D YPTS_0850 inner-membrane translocator K17203 eryF; erythritol transport system permease protein
D YPTS_2283 ABC transporter related K17204 eryE; erythritol transport system ATP-binding protein
D YPTS_0849 ABC transporter related K17204 eryE; erythritol transport system ATP-binding protein
D YPTS_3227 periplasmic binding protein/LacI transcriptional regulator K17205 xltC; putative xylitol transport system substrate-binding protein
D YPTS_3226 inner-membrane translocator K17206 xltB; putative xylitol transport system permease protein
D YPTS_3225 ABC transporter related K17207 xltA; putative xylitol transport system ATP-binding protein
D YPTS_1130 periplasmic binding protein/LacI transcriptional regulator K17208 ibpA; inositol transport system substrate-binding protein
D YPTS_1132 inner-membrane translocator K17209 iatP; inositol transport system permease protein
D YPTS_1131 ABC transporter related K17210 iatA; inositol transport system ATP-binding protein
D YPTS_0255 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPTS_0256 binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPTS_0257 ABC transporter related K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPTS_0573 ABC transporter, perplasmic sugar binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPTS_0575 inner-membrane translocator K10556 lsrC; AI-2 transport system permease protein
D YPTS_0574 inner-membrane translocator K10557 lsrD; AI-2 transport system permease protein
D YPTS_0576 ABC transporter related K10558 lsrA; AI-2 transport system ATP-binding protein
D YPTS_3703 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPTS_3704 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPTS_3705 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPTS_3702 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YPTS_3701 anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D YPTS_0531 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPTS_1962 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPTS_3625 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPTS_2612 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPTS_0532 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPTS_1963 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPTS_2611 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPTS_3624 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPTS_0533 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPTS_1964 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPTS_2610 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPTS_3623 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPTS_1814 sugar-binding periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPTS_0837 carbohydrate uptake ABC transporter 2 (CUT2) family, periplasmic carbohydrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPTS_1419 ABC transporter, periplasmic sugar-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPTS_1642 conserved hypothetical protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPTS_3786 periplasmic binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPTS_1422 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D YPTS_1676 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D YPTS_1813 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D YPTS_1816 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D YPTS_3783 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D YPTS_3784 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D YPTS_3799 RbsD or FucU transport K02057 ABC.SS.P; simple sugar transport system permease protein
D YPTS_0834 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D YPTS_0835 inner-membrane translocator K02057 ABC.SS.P; simple sugar transport system permease protein
D YPTS_3785 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_0836 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_1421 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_1677 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_1815 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPTS_0960 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPTS_4186 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPTS_2906 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein
D YPTS_4187 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D YPTS_2905 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D YPTS_4188 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D YPTS_2904 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPTS_4189 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPTS_1312 phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPTS_1313 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D YPTS_1314 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D YPTS_1311 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPTS_2702 polar amino acid ABC transporter, inner membrane subunit K10015 hisM; histidine transport system permease protein
D YPTS_2703 polar amino acid ABC transporter, inner membrane subunit K10016 hisQ; histidine transport system permease protein
D YPTS_2701 ABC transporter related K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_2704 cationic amino acid ABC transporter, periplasmic binding protein K10014 hisJ; histidine transport system substrate-binding protein
D YPTS_2643 cationic amino acid ABC transporter, periplasmic binding protein K10036 glnH; glutamine transport system substrate-binding protein
D YPTS_2644 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein
D YPTS_2645 ABC transporter related K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_1464 cationic amino acid ABC transporter, periplasmic binding protein K09996 artJ; arginine transport system substrate-binding protein
D YPTS_1476 cationic amino acid ABC transporter, periplasmic binding protein K09997 artI; arginine transport system substrate-binding protein
D YPTS_1474 polar amino acid ABC transporter, inner membrane subunit K09998 artM; arginine transport system permease protein
D YPTS_1475 polar amino acid ABC transporter, inner membrane subunit K09999 artQ; arginine transport system permease protein
D YPTS_1477 ABC transporter related K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_1165 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPTS_1163 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D YPTS_1164 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D YPTS_1162 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_1847 extracellular solute-binding protein family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D YPTS_1848 polar amino acid ABC transporter, inner membrane subunit K10009 tcyB; L-cystine transport system permease protein
D YPTS_1849 ABC transporter related K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_0241 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPTS_0242 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D YPTS_0243 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D YPTS_0244 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPTS_0245 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPTS_1445 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPTS_3095 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein
D YPTS_1447 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D YPTS_3094 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D YPTS_3093 D-methionine ABC transporter, ATPase subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPTS_1446 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D YPTS_1316 urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein
D YPTS_1317 urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein
D YPTS_1318 urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein
D YPTS_1319 urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein
D YPTS_1320 urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein
D YPTS_1265 ABC transporter related K11963 urtE; urea transport system ATP-binding protein
D YPTS_0907 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPTS_4192 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPTS_0908 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPTS_0909 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPTS_4193 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPTS_4194 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPTS_0910 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D YPTS_2173 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPTS_2335 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPTS_2174 binding-protein-dependent transport systems inner membrane component K15581 oppB; oligopeptide transport system permease protein
D YPTS_2175 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D YPTS_2176 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D YPTS_2177 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D YPTS_4058 extracellular solute-binding protein family 5 K12368 dppA; dipeptide transport system substrate-binding protein
D YPTS_4057 binding-protein-dependent transport systems inner membrane component K12369 dppB; dipeptide transport system permease protein
D YPTS_4056 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein
D YPTS_4055 oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein
D YPTS_4054 oligopeptide/dipeptide ABC transporter, ATPase subunit K12372 dppF; dipeptide transport system ATP-binding protein
D YPTS_2349 extracellular solute-binding protein family 5 K19226 sapA; cationic peptide transport system substrate-binding protein
D YPTS_2350 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein
D YPTS_2351 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein
D YPTS_2352 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein
D YPTS_2353 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein
D YPTS_0555 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPTS_3066 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPTS_0554 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPTS_3065 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPTS_0553 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPTS_3064 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPTS_0552 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPTS_3063 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPTS_0551 ABC transporter related K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPTS_3062 ABC transporter related K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPTS_1399 extracellular solute-binding protein family 5 K13893 yejA; microcin C transport system substrate-binding protein
D YPTS_1398 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D YPTS_1397 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D YPTS_1396 ABC transporter related K13896 yejF; microcin C transport system ATP-binding protein
D YPTS_0772 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPTS_0773 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein
D YPTS_0771 ABC transporter related K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPTS_0362 periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein
D YPTS_0361 transport system permease protein K25133 hmuU; heme transport system permease protein
D YPTS_0360 ABC transporter related K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D YPTS_3497 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPTS_1658 periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPTS_1657 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein
D YPTS_1656 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein
D YPTS_1655 ABC transporter related K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPTS_4075 periplasmic binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D YPTS_4077 transport system permease protein K25283 yclO; iron-siderophore transport system permease protein
D YPTS_4076 transport system permease protein K25284 yclN; iron-siderophore transport system permease protein
D YPTS_4078 ABC transporter related K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D YPTS_1437 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPTS_3362 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPTS_1438 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YPTS_1469 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YPTS_1439 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPTS_1470 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPTS_0779 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPTS_2408 transport system permease protein K06073 btuC; vitamin B12 transport system permease protein
D YPTS_2406 ABC transporter related K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPTS_2103 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D YPTS_2101 ABC-3 protein K09816 znuB; zinc transport system permease protein
D YPTS_2102 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPTS_2421 periplasmic solute binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPTS_2423 ABC-3 protein K11605 sitC; manganese/iron transport system permease protein
D YPTS_2424 ABC-3 protein K11606 sitD; manganese/iron transport system permease protein
D YPTS_2422 ABC transporter related K11607 sitB; manganese/iron transport system ATP-binding protein
D YPTS_0563 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D YPTS_0564 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D YPTS_3711 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPTS_1289 ABC-2 type transporter K25180 ybhR; drug efflux transport system permease protein
D YPTS_1290 ABC-2 type transporter K25181 ybhS; drug efflux transport system permease protein
D YPTS_1291 ABC transporter related K25182 ybhF; drug efflux transport system ATP-binding protein
D YPTS_1292 secretion protein HlyD family protein K25183 ybhG; membrane fusion protein YbhG
D YPTS_2524 lipoprotein releasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D YPTS_2526 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D YPTS_2525 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPTS_2743 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D YPTS_2744 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D YPTS_2745 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D YPTS_2746 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPTS_0238 protein insertion ABC transporter, inner membrane subunit FtsX K09811 ftsX; cell division transport system permease protein
D YPTS_0237 Type II (General) Secretory Pathway (IISP) Family protein K09812 ftsE; cell division transport system ATP-binding protein
D YPTS_0757 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D YPTS_0756 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D YPTS_1078 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D YPTS_1624 conserved hypothetical protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPTS_1992 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D YPTS_1993 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D YPTS_1077 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPTS_1994 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPTS_1622 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPTS_2386 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D YPTS_2249 putative sodium/bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPTS_3407 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D YPTS_2379 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D YPTS_1694 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D YPTS_1728 oligosaccharide/H+ symporter, major facilitator superfamily (MFS) K02532 lacY; MFS transporter, OHS family, lactose permease
D YPTS_0693 sugar efflux transporter K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D YPTS_1282 nucleoside transporter K11537 xapB; MFS transporter, NHS family, xanthosine permease
D YPTS_0632 major facilitator superfamily MFS_1 K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D YPTS_2836 major facilitator superfamily MFS_1 K03290 nanT; MFS transporter, SHS family, sialic acid transporter
D YPTS_3664 d-galactonate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D YPTS_3214 major facilitator superfamily MFS_1 K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D YPTS_1768 4-hydroxyphenylacetate transporter K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease
D YPTS_1685 major facilitator superfamily MFS_1 K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein
D YPTS_2974 major facilitator superfamily MFS_1 K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D YPTS_4063 phosphoglycerate transporter K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPTS_3163 major facilitator superfamily MFS_1 K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D YPTS_0995 AmpG-related permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPTS_1394 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPTS_2137 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPTS_0009 major facilitator superfamily MFS_1 K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPTS_2080 major facilitator superfamily MFS_1 K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D YPTS_3169 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D YPTS_0897 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D YPTS_2443 major facilitator superfamily MFS_1 K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D YPTS_2922 major facilitator superfamily MFS_1 K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPTS_1063 major facilitator superfamily MFS_1 K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D YPTS_2259 major facilitator superfamily MFS_1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D YPTS_1506 major facilitator superfamily MFS_1 K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D YPTS_1717 major facilitator superfamily MFS_1 K05373 ybtX; MFS transporter, putative signal transducer
D YPTS_3932 major facilitator superfamily MFS_1 K06141 tsgA; MFS transporter, TsgA protein
D YPTS_2596 General substrate transporter K08368 yaaU; MFS transporter, putative metabolite transport protein
D YPTS_2816 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPTS_3157 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPTS_2815 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D YPTS_3716 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
D YPTS_0569 phosphoenolpyruvate-protein phosphotransferase K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-]
D YPTS_1424 phosphocarrier, HPr family K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPTS_2817 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPTS_2551 PTS system, glucose-specific IIBC subunit K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPTS_3218 phosphotransferase system PTS EIIB protein K02778 ptsGb; glucose PTS system EIIB component [EC:2.7.1.199]
D YPTS_1178 PTS system, N-acetylglucosamine-specific IIBC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPTS_3722 PTS system, trehalose-specific IIBC subunit K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPTS_1426 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPTS_4138 PTS system, mannitol-specific IIC subunit K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPTS_3045 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPTS_3047 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPTS_3046 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D YPTS_1757 PTS system, mannose/fructose/sorbose family, IIB subunit K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPTS_1756 PTS system, mannose/fructose/sorbose family, IIC subunit K02795 manY; mannose PTS system EIIC component
D YPTS_1755 PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component
D YPTS_3202 PTS system fructose subfamily IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPTS_3199 PTS system, mannose/fructose/sorbose family, IIB subunit K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPTS_3200 phosphotransferase system PTS sorbose-specific IIC subunit K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPTS_3201 PTS system mannose/fructose/sorbose family IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPTS_2694 putative PTS IIA-like nitrogen-regulatory protein PtsN K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPTS_2695 phosphotransferase system lactose/cellobiose-specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPTS_2696 putative sugar-specific permease SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component
D YPTS_3714 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D YPTS_0091 MIP family channel protein K02440 glpF; glycerol uptake facilitator
D YPTS_3050 TrkA-N domain protein K10716 kch; voltage-gated potassium channel
D YPTS_1015 ammonium transporter K03320 amt; ammonium transporter, Amt family
D YPTS_2358 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPTS_1441 Glutathione S-transferase domain protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPTS_3691 Glutathione S-transferase domain protein K03599 sspA; stringent starvation protein A
D YPTS_2827 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D YPTS_1510 formate/nitrite transporter K06212 focA; formate transporter
D YPTS_3937 formate/nitrite transporter K02598 nirC; nitrite transporter
D YPTS_3861 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D YPTS_1029 MscS Mechanosensitive ion channel K05802 mscK; potassium-dependent mechanosensitive channel
D YPTS_0441 MscS Mechanosensitive ion channel K22051 mscM; miniconductance mechanosensitive channel
D YPTS_3326 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D YPTS_2605 MscS Mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel
D YPTS_2910 magnesium transporter K06213 mgtE; magnesium transporter
D YPTS_3053 urea transporter K08717 utp; urea transporter
D YPTS_2486 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPTS_3454 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPTS_2485 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPTS_3453 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPTS_3523 tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB
D YPTS_3522 TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D YPTS_1233 protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D YPTS_1234 protein TolR K03560 tolR; biopolymer transport protein TolR
D YPTS_0213 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D YPTS_2334 Mg2 transporter protein CorA family protein K16074 zntB; zinc transporter
D YPTS_3048 CrcB protein K06199 crcB; fluoride exporter
D YPTS_3049 Camphor resistance CrcB protein K06199 crcB; fluoride exporter
D YPTS_1145 CrcB protein K06199 crcB; fluoride exporter
D YPTS_0480 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPTS_0867 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPTS_1537 porin Gram-negative type K09476 ompF; outer membrane pore protein F
D YPTS_1332 porin Gram-negative type K11929 phoE; outer membrane pore protein E
D YPTS_1350 porin Gram-negative type K09475 ompC; outer membrane pore protein C
D YPTS_3827 porin LamB type K02024 lamB; maltoporin
D YPTS_3217 porin LamB type K02024 lamB; maltoporin
D YPTS_1559 OmpA domain protein transmembrane region-containing protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D YPTS_2637 virulence-related outer membrane protein K11934 ompX; outer membrane protein X
D YPTS_2975 virulence-related outer membrane protein K16078 ail; attachment invasion locus protein
D YPTS_2736 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein
D YPTS_1431 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2446 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2460 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_0169 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2765 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_1968 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_3441 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D YPTS_0132 TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter
D YPTS_0120 extracellular heme acquisition hemophore HasA K12545 hasA; heme acquisition protein HasA
D YPTS_0119 TonB-dependent heme/hemoglobin receptor family protein K16152 hasR; heme acquisition protein HasR
D YPTS_1708 TonB-dependent siderophore receptor K15721 fyuA; pesticin/yersiniabactin receptor
D YPTS_1659 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D YPTS_0827 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPTS_1440 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPTS_0364 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D YPTS_3363 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPTS_3436 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPTS_1752 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPTS_3931 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPTS_3403 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPTS_3541 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPTS_0523 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D YPTS_3115 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D YPTS_2947 outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB
D YPTS_2888 NlpBDapX family lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D YPTS_0884 putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D YPTS_1215 SmpA/OmlA domain protein K06186 bamE; outer membrane protein assembly factor BamE
D YPTS_0482 surface antigen (D15) K07278 tamA; translocation and assembly module TamA
D YPTS_0483 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB
D YPTS_4051 Oligogalacturonate-specific porin K22110 kdgM; oligogalacturonate-specific porin family protein
D YPTS_2437 Oligogalacturonate-specific porin K22110 kdgM; oligogalacturonate-specific porin family protein
D YPTS_3309 YadA domain protein K21449 ata; trimeric autotransporter adhesin
D YPTS_3710 lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D YPTS_3709 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC
D YPTS_0659 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D YPTS_1159 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D YPTS_4274 secretion system effector C (SseC) family protein K23475 yopB; transloator
D YPTS_4273 YopD family protein K23476 yopD; transloator
D YPTS_0416 conserved hypothetical protein K19298 subB; subtilase cytotoxin, subunit B
D YPTS_1167 transporter-associated region K06189 corC; hemolysin (HlyC) family protein
D YPTS_1639 LrgA family protein K06518 cidA; holin-like protein
D YPTS_1352 putative transport protein K16210 togT; oligogalacturonide transporter
D YPTS_1436 amino acid permease-associated region K11733 lysP; lysine-specific permease
D YPTS_0740 amino acid permease-associated region K11734 aroP; aromatic amino acid transport protein AroP
D YPTS_1743 amino acid permease-associated region K11734 aroP; aromatic amino acid transport protein AroP
D YPTS_0962 amino acid permease-associated region K11736 proY; proline-specific permease ProY
D YPTS_1862 amino acid permease-associated region K11737 cycA; D-serine/D-alanine/glycine transporter
D YPTS_1984 amino acid permease-associated region K11738 ansP; L-asparagine permease
D YPTS_4068 amino acid permease-associated region K16234 hutT; histidine transporter
D YPTS_2305 arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D YPTS_1328 amino acid permease-associated region K03759 adiC; arginine:agmatine antiporter
D YPTS_3549 amino acid permease-associated region K16263 yjeH; amino acid efflux transporter
D YPTS_1241 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D YPTS_0076 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D YPTS_1025 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_0522 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_3444 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_2869 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18324 acrD; multidrug efflux pump
D YPTS_2920 acriflavin resistance protein K07788 mdtB; multidrug efflux pump
D YPTS_2921 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D YPTS_2328 small multidrug resistance protein K03297 emrE; small multidrug resistance pump
D YPTS_0435 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D YPTS_2113 small multidrug resistance protein K11742 mdtI; spermidine export protein MdtI
D YPTS_2112 small multidrug resistance protein K11743 mdtJ; spermidine export protein MdtJ
D YPTS_3036 protein of unknown function DUF6 transmembrane K08978 TC.BAT1; bacterial/archaeal transporter family protein
D YPTS_2638 protein of unknown function DUF6 transmembrane K11939 rhtA; inner membrane transporter RhtA
D YPTS_0413 L-rhamnose-proton symporter, RhaT family, DMT superfamily K02856 rhaT; L-rhamnose-H+ transport protein
D YPTS_0214 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD
D YPTS_2400 small multidrug resistance protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPTS_3424 gluconate transporter K16321 gntP; high-affinity gluconate transporter
D YPTS_3996 gluconate transporter K06155 gntT; Gnt-I system high-affinity gluconate transporter
D YPTS_4034 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D YPTS_0427 anaerobic c4-dicarboxylate antiporter, Dcu family K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D YPTS_0875 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPTS_1278 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein
D YPTS_2006 calcium/proton exchanger K07300 chaA; Ca2+:H+ antiporter
D YPTS_3706 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter
D YPTS_4024 phosphate transporter K16322 pit; low-affinity inorganic phosphate transporter
D YPTS_3762 sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter
D YPTS_1856 sodium/proline symporter K11928 putP; sodium/proline symporter
D YPTS_0330 cation/acetate symporter ActP K14393 actP; cation/acetate symporter
D YPTS_0333 sodium:dicarboxylate symporter K11102 gltP; proton glutamate symport protein
D YPTS_4048 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPTS_3659 sodium:dicarboxylate symporter K07862 sstT; serine/threonine transporter
D YPTS_0033 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D YPTS_0637 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D YPTS_2133 Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D YPTS_2277 Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family
D YPTS_3789 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D YPTS_2590 sodium/hydrogen exchanger K11105 cvrA; potassium/hydrogen antiporter
D YPTS_3906 potassium efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D YPTS_3907 NAD(P)H dehydrogenase (quinone) K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D YPTS_1062 potassium efflux system protein K26735 KEA4_5_6; K+:H+ antiporter
D YPTS_0286 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D YPTS_3860 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D YPTS_2898 uracil-xanthine permease K02824 uraA; uracil permease
D YPTS_0032 uracil-xanthine permease K16345 xanP; xanthine permease XanP
D YPTS_4196 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPTS_3790 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPTS_2805 nucleoside transporter K11535 nupC; nucleoside transport protein
D YPTS_1336 aromatic amino acid transporter K03834 tyrP; tyrosine-specific transport protein
D YPTS_1409 aromatic amino acid transporter K03835 mtr; tryptophan-specific transport protein
D YPTS_1449 serine transporter K03837 sdaC; serine transporter
D YPTS_0358 putative serine transporter K26603 yhjV; inner membrane transport protein
D YPTS_0776 Chloride channel core K03281 clcA; chloride channel protein, CIC family
D YPTS_2263 Chloride channel core K03281 clcA; chloride channel protein, CIC family
D YPTS_3052 high-affinity nickel-transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D YPTS_2068 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D YPTS_2804 Mn2+/Fe2+ transporter, NRAMP family K03322 mntH; manganese transport protein
D YPTS_0819 arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D YPTS_0188 polysaccharide biosynthesis protein K16693 wzxE; enterobacterial common antigen flippase
D YPTS_2084 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D YPTS_0259 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D YPTS_2945 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D YPTS_4165 potassium uptake protein K03549 kup; KUP system potassium uptake protein
D YPTS_3325 L-lysine exporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D YPTS_0219 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein
D YPTS_0218 homoserine/threonine efflux pump K05835 rhtC; threonine efflux protein
D YPTS_0649 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein
D YPTS_0901 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D YPTS_0900 conserved hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D YPTS_3732 Fusaric acid resistance protein conserved region K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D YPTS_3619 Fusaric acid resistance protein conserved region K15547 mdtO; multidrug resistance protein MdtO
D YPTS_2894 protein of unknown function UPF0118 K03548 perM; putative permease
D YPTS_0228 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter
D YPTS_2419 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein
D YPTS_0714 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YPTS_1753 protein of unknown function DUF204 K23242 mntP; manganese efflux pump family protein
D YPTS_1988 iron permease FTR1 K07243 FTR; high-affinity iron transporter
D YPTS_1857 iron permease FTR1 K07243 FTR; high-affinity iron transporter
D YPTS_1858 conserved hypothetical protein K07224 efeO; iron uptake system component EfeO
D YPTS_1859 Dyp-type peroxidase family K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D YPTS_1989 conserved hypothetical protein K07230 p19; periplasmic iron binding protein
D YPTS_2971 high-affinity nickel-transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D YPTS_0123 TonB family protein K03832 tonB; periplasmic protein TonB
D YPTS_2188 TonB family protein K03832 tonB; periplasmic protein TonB
D YPTS_1237 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D YPTS_1235 protein TolA K03646 tolA; colicin import membrane protein
D YPTS_1236 Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D YPTS_0840 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPTS_2787 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPTS_2788 dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPTS_0841 dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPTS_0842 DMSO reductase anchor subunit (DmsC) K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPTS_2789 putative dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPTS_3165 molybdopterin oxidoreductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
D YPTS_0898 efflux pump membrane protein K03543 emrA; membrane fusion protein, multidrug efflux system
D YPTS_3618 secretion protein HlyD family protein K15549 mdtN; membrane fusion protein, multidrug efflux system
D YPTS_0122 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system
D YPTS_2240 type I secretion membrane fusion protein, HlyD family K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPTS_0094 secretion protein HlyD family protein K13408 cvaA; membrane fusion protein
D YPTS_0521 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_1026 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_1254 conserved hypothetical protein K25859 acrZ; accessory protein, multidrug efflux pump
D YPTS_2919 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPTS_1490 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPTS_2820 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPTS_3733 secretion protein HlyD family protein K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA
D YPTS_1240 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D YPTS_3963 FeoA family protein K04758 feoA; ferrous iron transport protein A
D YPTS_3964 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D YPTS_3965 Protein of unknown function DUF1920 K07490 feoC; ferrous iron transport protein C
D YPTS_4025 universal stress protein B K06144 uspB; universal stress protein B
D YPTS_2741 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D YPTS_2490 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPTS_2327 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPTS_1786 copper resistance D domain protein K07245 pcoD; copper resistance protein D
D YPTS_1785 copper resistance protein CopC K07156 copC; copper resistance protein C
D YPTS_2144 MltA-interacting MipA family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:ypb02044]
D YPTS_3541 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPTS_2239 type I secretion system ATPase K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPTS_2241 type I secretion system ATPase K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPTS_2240 type I secretion membrane fusion protein, HlyD family K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPTS_0121 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPTS_0122 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system
D YPTS_0094 secretion protein HlyD family protein K13408 cvaA; membrane fusion protein
D YPTS_0093 ABC transporter related K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPTS_3188 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPTS_3187 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D YPTS_3186 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPTS_3185 type II secretion system protein K02455 gspF; general secretion pathway protein F
D YPTS_3184 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPTS_3183 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D YPTS_3182 type II secretion system protein I/J K02458 gspI; general secretion pathway protein I
D YPTS_3181 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPTS_3180 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPTS_3179 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D YPTS_3177 peptidase A24A domain protein K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPTS_3176 conserved hypothetical protein K02465 gspS; general secretion pathway protein S
D YPTS_2952 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D YPTS_3345 twitching motility protein K02669 pilT; twitching motility protein PilT
D YPTS_3508 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPTS_3509 putative membrane protein K02279 cpaB; pilus assembly protein CpaB
D YPTS_3510 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D YPTS_3512 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPTS_3513 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPTS_3514 type II secretion system protein K12510 tadB; tight adherence protein B
D YPTS_3515 type II secretion system protein K12511 tadC; tight adherence protein C
D YPTS_3517 putative lipoprotein K12512 tadD; tight adherence protein D
D YPTS_3518 TadE family protein K12513 tadE; tight adherence protein E
D YPTS_3519 conserved hypothetical protein K12514 tadF; tight adherence protein F
D YPTS_3520 conserved hypothetical protein K12515 tadG; tight adherence protein G
D YPTS_3153 prepilin-type N-terminal cleavage/methylation domain protein K02679 ppdA; prepilin peptidase dependent protein A
D YPTS_3152 prepilin peptidase dependent protein K02680 ppdB; prepilin peptidase dependent protein B
D YPTS_3150 prepilin peptidase dependent protein-like protein K02681 ppdC; prepilin peptidase dependent protein C
D YPTS_0736 type IV pilin PilA K02682 ppdD; prepilin peptidase dependent protein D
D YPTS_0735 type II secretion system protein E K02504 hofB; protein transport protein HofB
D YPTS_0734 type II secretion system protein K02505 hofC; protein transport protein HofC
D YPTS_3950 conserved hypothetical protein K12288 hofM; pilus assembly protein HofM
D YPTS_3949 Fimbrial assembly family protein K12289 hofN; pilus assembly protein HofN
D YPTS_3948 membrane protein K12290 hofO; pilus assembly protein HofO
D YPTS_3947 membrane protein K12291 hofP; pilus assembly protein HofP
D YPTS_3946 type IV pilus secretin PilQ K02507 hofQ; protein transport protein HofQ
D YPTS_3349 protein of unknown function YGGT K02221 yggT; YggT family protein
D YPTS_1005 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA
D YPTS_1521 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D YPTS_4208 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C
D YPTS_0336 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C
D YPTS_4209 type III secretion apparatus protein, YscD/HrpQ family K03220 yscD; type III secretion protein D
D YPTS_0337 type III secretion apparatus protein, YscD/HrpQ family K03220 yscD; type III secretion protein D
D YPTS_4211 type III secretion system needle protein K03221 yscF; type III secretion protein F
D YPTS_0340 type III secretion system needle protein K03221 yscF; type III secretion protein F
D YPTS_4214 type III secretion apparatus protein, YscI/HrpB family K04053 yscI; type III secretion protein I
D YPTS_0343 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J
D YPTS_4215 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J
D YPTS_4216 YOP protein translocation K family protein K04054 yscK; type III secretion protein K
D YPTS_4217 type III secretion apparatus protein, HrpE/YscL family K03223 yscL; type III secretion protein L
D YPTS_4285 type III secretion apparatus H+-transporting two-sector ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPTS_0347 type III secretion apparatus H+-transporting two-sector ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPTS_4286 type III secretion YscO fmaily protein K04056 yscO; type III secretion protein O
D YPTS_4287 type III secretion system needle length determinant K04057 yscP; type III secretion protein P
D YPTS_0350 type III secretion system apparatus protein YscQ/HrcQ K03225 yscQ; type III secretion protein Q
D YPTS_4288 type III secretion system apparatus protein YscQ/HrcQ K03225 yscQ; type III secretion protein Q
D YPTS_4289 Yop virulence translocation R K03226 yscR; type III secretion protein R
D YPTS_0351 Yop virulence translocation R K03226 yscR; type III secretion protein R
D YPTS_4290 type III secretion protein, HrpO family K03227 yscS; type III secretion protein S
D YPTS_0352 type III secretion protein, HrpO family K03227 yscS; type III secretion protein S
D YPTS_4291 type III secretion protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T
D YPTS_0353 type III secretion protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T
D YPTS_4292 type III secretion protein, YscU/HrpY family K03229 yscU; type III secretion protein U
D YPTS_0354 type III secretion protein, YscU/HrpY family K03229 yscU; type III secretion protein U
D YPTS_4279 type III secretion protein, HrcV family K03230 yscV; type III secretion protein V
D YPTS_0346 type III secretion protein, HrcV family K03230 yscV; type III secretion protein V
D YPTS_4284 type III secretion regulator YopN/LcrE/InvE/MxiC K04058 yscW; type III secretion protein W
D YPTS_4281 type III secretion protein, YscX family K04059 yscX; type III secretion protein X
D YPTS_4207 type III secretion system chaperone, YscB family K04049 yscB; type III secretion protein B
D YPTS_4210 type III secretion system protein, YseE family K04050 yscE; type III secretion protein E
D YPTS_4212 type III secretion protein, YscG family K04051 yscG; type III secretion protein G
D YPTS_4213 type III secretion effector, YopR family K04052 yscH; type III secretion protein H
D YPTS_4218 Protein-tyrosine phosphatase YopH K04055 yscM; type III secretion protein M
D YPTS_4280 type III secretion protein K04060 yscY; type III secretion protein Y
D YPTS_3493 type III secretion FHIPEP protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPTS_1793 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPTS_3492 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPTS_1792 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPTS_3484 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPTS_1832 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPTS_1830 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPTS_3482 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPTS_1829 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPTS_3481 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPTS_1824 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPTS_3488 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPTS_1823 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPTS_3489 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPTS_1822 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPTS_3490 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPTS_1821 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPTS_3491 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPTS_1820 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPTS_3297 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPTS_3441 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D YPTS_4238 YadA domain protein K12341 yadA; adhesin YadA
D YPTS_1513 Haemagluttinin domain protein K12342 yadB_C; adhesin YadB/C
D YPTS_1514 conserved hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPTS_2085 Hemolysin activator HlyB domain protein K11017 shlB; hemolysin activation/secretion protein
D YPTS_3837 Hemolysin activator HlyB domain protein K11017 shlB; hemolysin activation/secretion protein
D YPTS_3838 filamentous haemagglutinin family outer membrane protein K11016 shlA; hemolysin
D YPTS_2757 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPTS_3809 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPTS_1606 ImcF domain protein K11891 impL; type VI secretion system protein ImpL
D YPTS_0679 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPTS_3814 membrane protein K11892 impK; type VI secretion system protein ImpK
D YPTS_2758 type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK
D YPTS_3383 possibly conserved membrane protein K11892 impK; type VI secretion system protein ImpK
D YPTS_1593 conserved hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPTS_0678 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
D YPTS_1592 type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ
D YPTS_2759 type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ
D YPTS_3815 type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ
D YPTS_3384 type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ
D YPTS_0677 type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ
D YPTS_2770 type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH
D YPTS_3818 type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH
D YPTS_1611 type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH
D YPTS_0669 type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH
D YPTS_3819 type VI secretion protein, VC_A0110 family K11896 impG; type VI secretion system protein ImpG
D YPTS_2769 type VI secretion protein, VC_A0110 family K11896 impG; type VI secretion system protein ImpG
D YPTS_1610 type VI secretion protein, VC_A0110 family K11896 impG; type VI secretion system protein ImpG
D YPTS_0668 type VI secretion protein, VC_A0110 family K11896 impG; type VI secretion system protein ImpG
D YPTS_2752 type VI secretion system lysozyme-related protein K11897 impF; type VI secretion system protein ImpF
D YPTS_0667 type VI secretion system lysozyme-related protein K11897 impF; type VI secretion system protein ImpF
D YPTS_2762 type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC
D YPTS_1591 type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC
D YPTS_3821 type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC
D YPTS_3385 type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC
D YPTS_0665 type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC
D YPTS_3386 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPTS_2763 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPTS_3822 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPTS_1590 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPTS_0664 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPTS_2771 ImpA domain protein K11902 impA; type VI secretion system protein ImpA
D YPTS_0663 ImpA domain protein K11902 impA; type VI secretion system protein ImpA
D YPTS_3823 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_2761 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_1595 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_0666 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_3381 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPTS_3421 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_3379 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_1600 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_2756 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_3807 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_0671 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_1597 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPTS_3820 type VI secretion system lysozyme-related protein K11905 K11905; type VI secretion system protein
D YPTS_1613 type VI secretion system lysozyme-related protein K11905 K11905; type VI secretion system protein
D YPTS_3816 lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPTS_1612 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPTS_2760 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPTS_0676 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPTS_3380 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPTS_2768 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPTS_3813 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPTS_0670 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPTS_1596 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPTS_1607 type VI secretion-associated protein, VC_A0119 family K11910 vasJ; type VI secretion system protein VasJ
D YPTS_3810 type VI secretion-associated protein, VC_A0119 family K11910 vasJ; type VI secretion system protein VasJ
D YPTS_1614 ImpA domain protein K11911 vasL; type VI secretion system protein VasL
D YPTS_3808 ImpA domain protein K11911 vasL; type VI secretion system protein VasL
D YPTS_3817 putative FHA domain containing protein K11894 impI; type VI secretion system protein ImpI
D YPTS_2753 virulence protein SciE type K11898 impE; type VI secretion system protein ImpE
D YPTS_3811 conserved hypothetical protein K11909 vasI; type VI secretion system protein VasI
D YPTS_2445 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_2448 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_0171 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_1970 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_2767 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_2444 Pili assembly chaperone, N-terminal K07346 fimC; fimbrial chaperone protein
D YPTS_2459 pilus assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPTS_0170 Pili assembly chaperone, N-terminal K07346 fimC; fimbrial chaperone protein
D YPTS_1431 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2446 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2460 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_0169 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2765 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_1968 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2457 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2461 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2458 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2456 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_3500 fimbrial biogenesis outer membrane usher protein K12518 papC; outer membrane usher protein PapC
D YPTS_4112 fimbrial biogenesis outer membrane usher protein K12518 papC; outer membrane usher protein PapC
D YPTS_3499 Pili assembly chaperone, N-terminal K12519 papD; chaperone protein PapD
D YPTS_0724 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPTS_0065 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPTS_0971 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPTS_0297 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D YPTS_0972 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D YPTS_0507 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D YPTS_0723 secretion monitor family proten K13301 secM; secretion monitor
D YPTS_3870 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPTS_0869 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPTS_0236 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPTS_0970 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D YPTS_4202 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPTS_0274 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D YPTS_0275 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D YPTS_0276 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D YPTS_1147 twin-arginine translocation protein, TatA/E family subunit K03425 tatE; sec-independent protein translocase protein TatE
C 02042 Bacterial toxins [BR:ypb02042]
D YPTS_0416 conserved hypothetical protein K19298 subB; subtilase cytotoxin, subunit B
D YPTS_3744 YD repeat protein K11021 tccC; insecticidal toxin complex protein TccC
D YPTS_2310 YD repeat protein K11021 tccC; insecticidal toxin complex protein TccC
D YPTS_2367 YD repeat protein K11021 tccC; insecticidal toxin complex protein TccC
D YPTS_0480 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPTS_0867 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPTS_3838 filamentous haemagglutinin family outer membrane protein K11016 shlA; hemolysin
D YPTS_2085 Hemolysin activator HlyB domain protein K11017 shlB; hemolysin activation/secretion protein
D YPTS_3837 Hemolysin activator HlyB domain protein K11017 shlB; hemolysin activation/secretion protein
D YPTS_3307 channel protein, hemolysin III family K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:ypb02022]
D YPTS_0959 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPTS_0958 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPTS_2829 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPTS_2519 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPTS_2518 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPTS_3959 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPTS_3960 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPTS_2308 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPTS_2307 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPTS_0070 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPTS_0071 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPTS_3301 integral membrane sensor signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPTS_3302 two component transcriptional regulator, winged helix family K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPTS_2923 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPTS_2924 two component transcriptional regulator, winged helix family K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPTS_0498 integral membrane sensor signal transduction histidine kinase K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPTS_0499 two component transcriptional regulator, winged helix family K07771 basR; two-component system, OmpR family, response regulator BasR
D YPTS_2049 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPTS_2050 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPTS_3034 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPTS_3035 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPTS_3684 multi-sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPTS_0624 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPTS_2818 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPTS_2819 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D YPTS_2007 integral membrane sensor signal transduction histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPTS_2867 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPTS_4064 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPTS_4065 two component transcriptional regulator, LuxR family K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPTS_1721 two component transcriptional regulator, LuxR family K20264 fusR; two-component system, NarL family, response regulator FusR
D YPTS_1345 integral membrane sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPTS_1347 multi-sensor signal transduction histidine kinase K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPTS_1346 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPTS_0783 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPTS_1867 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPTS_1971 histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D YPTS_1972 two component transcriptional regulator, LuxR family K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D YPTS_3985 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPTS_0876 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D YPTS_0024 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPTS_0023 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPTS_1284 signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPTS_1285 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPTS_2986 integral membrane sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPTS_2984 two component, sigma54 specific, transcriptional regulator, Fis family K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPTS_2484 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPTS_2476 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPTS_2477 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPTS_0335 multi-sensor hybrid histidine kinase K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPTS_0334 two component transcriptional regulator, LuxR family K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPTS_3486 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D YPTS_2165 response regulator receiver protein K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:ypb02035]
D YPTS_2484 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPTS_2483 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D YPTS_2478 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPTS_2477 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPTS_2476 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPTS_2475 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D YPTS_1354 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPTS_2646 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPTS_2480 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPTS_3173 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPTS_4146 methyl-accepting chemotaxis sensory transducer K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPTS_2491 methyl-accepting chemotaxis sensory transducer K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPTS_2479 methyl-accepting chemotaxis sensory transducer K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPTS_2507 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D YPTS_1830 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPTS_3482 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPTS_1829 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPTS_3481 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPTS_1828 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D YPTS_1823 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPTS_3489 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPTS_1822 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPTS_3490 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPTS_1821 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPTS_3491 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPTS_1820 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPTS_3493 type III secretion FHIPEP protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPTS_1793 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPTS_3492 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPTS_1792 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPTS_1794 flagellar FlhE family protein K03516 flhE; flagellar protein FlhE
D YPTS_3483 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPTS_1831 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPTS_3487 putative flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPTS_1825 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPTS_1824 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPTS_3488 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPTS_3484 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPTS_1832 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPTS_3469 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D YPTS_1806 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D YPTS_3477 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPTS_1798 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPTS_3470 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D YPTS_1805 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D YPTS_1826 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D YPTS_3456 putative flagellar biogenesis protein K02415 fliL; flagellar protein FliL
D YPTS_3485 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPTS_1833 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPTS_1827 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPTS_3457 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPTS_3476 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPTS_1799 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPTS_3475 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPTS_1800 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPTS_3474 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPTS_1801 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPTS_3472 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPTS_1803 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPTS_3471 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPTS_1804 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPTS_3468 peptidoglycan hydrolase K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPTS_1807 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPTS_3473 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE
D YPTS_1802 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE
D YPTS_3467 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YPTS_1808 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YPTS_3466 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPTS_1809 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPTS_3479 conserved hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPTS_1796 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPTS_2903 protein of unknown function UPF0153 K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D YPTS_3461 flagellin domain protein K02406 fliC; flagellin
D YPTS_3462 flagellin domain protein K02406 fliC; flagellin
D YPTS_1842 flagellin domain protein K02406 fliC; flagellin
D YPTS_3460 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D YPTS_1841 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D YPTS_3459 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPTS_1840 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPTS_1839 flagellar export chaperone K02423 fliT; flagellar protein FliT
D YPTS_2488 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD
D YPTS_2487 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D YPTS_3455 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPTS_1843 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPTS_2486 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPTS_3454 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPTS_2485 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPTS_3453 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPTS_3486 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D YPTS_1847 extracellular solute-binding protein family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D YPTS_1845 integrase domain protein SAM domain protein K02425 fliZ; regulator of sigma S factor FliZ
D YPTS_3478 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPTS_1797 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPTS_3345 twitching motility protein K02669 pilT; twitching motility protein PilT
D YPTS_2952 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D YPTS_3508 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPTS_3509 putative membrane protein K02279 cpaB; pilus assembly protein CpaB
D YPTS_3510 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D YPTS_3512 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPTS_3513 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPTS_2445 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_2448 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_0171 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_1970 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_2767 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPTS_2444 Pili assembly chaperone, N-terminal K07346 fimC; fimbrial chaperone protein
D YPTS_2459 pilus assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPTS_0170 Pili assembly chaperone, N-terminal K07346 fimC; fimbrial chaperone protein
D YPTS_1431 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2446 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2460 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_0169 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2765 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_1968 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPTS_2457 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2461 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2458 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPTS_2456 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ypb04812]
D YPTS_3752 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D YPTS_0720 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPTS_0719 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YPTS_2122 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D YPTS_2121 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D YPTS_2120 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D YPTS_4258 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D YPTS_4257 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:ypb04147]
D YPTS_1038 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YPTS_0788 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPTS_2146 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPTS_3328 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPTS_2380 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPTS_2107 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPTS_3927 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPTS_0966 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D YPTS_0431 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPTS_0635 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPTS_3835 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPTS_2941 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPTS_3894 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPTS_0296 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPTS_2537 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPTS_2249 putative sodium/bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPTS_2118 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPTS_0701 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPTS_1039 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPTS_1034 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPTS_4072 phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPTS_0118 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPTS_1693 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPTS_1322 Pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPTS_0486 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPTS_1247 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPTS_3984 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPTS_0090 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPTS_0853 carbohydrate kinase FGGY K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPTS_0025 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPTS_0278 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPTS_2298 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPTS_3321 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPTS_1412 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPTS_0321 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPTS_0124 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_0745 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPTS_2109 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPTS_0085 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPTS_1244 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:ypb02048]
D YPTS_2604 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D YPTS_2603 CRISPR-associated helicase Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D YPTS_2602 CRISPR-associated protein, Csy1 family K19127 csy1; CRISPR-associated protein Csy1
D YPTS_2601 CRISPR-associated protein, Csy2 family K19128 csy2; CRISPR-associated protein Csy2
D YPTS_2600 CRISPR-associated protein, Csy3 family K19129 csy3; CRISPR-associated protein Csy3
D YPTS_2599 CRISPR-associated protein, Csy4 family K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D YPTS_0568 type III restriction protein res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D YPTS_4097 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D YPTS_4099 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D YPTS_4100 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D YPTS_1904 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPTS_3942 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPTS_1903 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPTS_4095 restriction endonuclease K07448 mrr; restriction system protein
D YPTS_3250 plasmid stabilization system K06218 relE; mRNA interferase RelE/StbE
D YPTS_3791 RelB antitoxin K07473 dinJ; DNA-damage-inducible protein J
D YPTS_2795 conserved hypothetical protein K18843 hicB; antitoxin HicB
D YPTS_1020 Haemolysin expression modulating family protein K05839 hha; haemolysin expression modulating protein
D YPTS_1021 conserved hypothetical protein K19162 tomB; hha toxicity modulator TomB
D YPTS_2345 phage shock protein C, PspC K03973 pspC; phage shock protein C
D YPTS_2346 phage shock protein B K03970 pspB; phage shock protein B
D YPTS_4253 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4
D YPTS_4254 putative addiction module antidote protein, CopG/Arc/MetJ family K07746 parD1_3_4; antitoxin ParD1/3/4
D YPTS_1835 death-on-curing family protein K07341 doc; death on curing protein
D YPTS_3248 conserved hypothetical protein K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin
D YPTS_3247 transcriptional regulator, XRE family K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPTS_0556 conserved hypothetical protein K19334 tabA; biofilm protein TabA
D YPTS_2668 conserved hypothetical protein K19334 tabA; biofilm protein TabA
D YPTS_2572 conserved hypothetical protein K12148 bssS; biofilm regulator BssS
D YPTS_0720 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPTS_3752 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D YPTS_3533 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPTS_3536 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPTS_2806 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPTS_1194 protein of unknown function DUF1219 K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D YPTS_4084 protein of unknown function DUF1219 K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D YPTS_1197 YagBYeeUYfjZ family protein K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D YPTS_4085 YagBYeeUYfjZ family protein K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D YPTS_3304 protein of unknown function DUF339 K09159 cptB; antitoxin CptB
D YPTS_2128 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPTS_2967 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:ypb04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:ypb04090]
C 01504 Antimicrobial resistance genes [BR:ypb01504]
D YPTS_0009 major facilitator superfamily MFS_1 K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPTS_2049 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPTS_2050 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPTS_2519 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPTS_2518 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPTS_0521 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_1026 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPTS_1025 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_0522 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_3444 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPTS_0523 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D YPTS_1071 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPTS_3541 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPTS_1537 porin Gram-negative type K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:ypb00536]
D YPTS_2621 filamentous haemagglutinin family outer membrane protein K15125 fhaB; filamentous hemagglutinin
D YPTS_3645 filamentous haemagglutinin family outer membrane protein K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ypb00537]
D YPTS_2298 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ypb03100]
D YPTS_R0009 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0027 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0055 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0044 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPTS_R0028 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0004 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0065 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0022 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0024 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0023 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPTS_R0070 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPTS_R0072 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPTS_R0071 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPTS_R0002 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPTS_R0059 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPTS_R0060 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPTS_R0039 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPTS_R0076 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPTS_R0077 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPTS_R0079 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPTS_R0001 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPTS_R0058 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPTS_R0014 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPTS_R0051 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPTS_R0012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0015 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0016 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0038 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0017 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0057 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPTS_R0005 tRNA-His K14226 tRNA-His; tRNA His
D YPTS_R0008 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPTS_R0054 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPTS_R0026 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPTS_R0018 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0075 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0006 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0081 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0082 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0080 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPTS_R0029 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0032 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0031 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0064 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0030 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0037 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0033 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPTS_R0074 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0078 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0050 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0019 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0046 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0047 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0048 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPTS_R0049 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPTS_R0083 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPTS_R0007 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPTS_R0053 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPTS_R0073 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPTS_R0036 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0021 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0034 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0068 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0069 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPTS_R0013 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPTS_R0056 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPTS_R0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPTS_R0035 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPTS_R0003 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPTS_R0011 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPTS_R0066 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPTS_R0067 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPTS_R0061 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0062 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0063 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0041 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0042 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0043 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPTS_R0052 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPTS_R0084 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0085 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0089 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0088 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0090 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0087 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPTS_R0092 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0094 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0093 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0091 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0096 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPTS_R0097 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D YPTS_2666 short-chain dehydrogenase/reductase SDR K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D YPTS_3528 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPTS_1101 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPTS_3089 aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D YPTS_2229 NAD-dependent epimerase/dehydratase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D YPTS_1678 iron-containing alcohol dehydrogenase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-]
D YPTS_2802 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D YPTS_2633 Alcohol dehydrogenase zinc-binding domain protein K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D YPTS_0814 Alcohol dehydrogenase zinc-binding domain protein K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D YPTS_0387 Berberine/berberine domain protein K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29]
D YPTS_2598 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D YPTS_3654 NADH:flavin oxidoreductase/NADH oxidase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D YPTS_2573 FAD dependent oxidoreductase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D YPTS_0397 Alcohol dehydrogenase zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPTS_2496 NAD(P)H quinone oxidoreductase, PIG3 family K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPTS_3534 NAD(P)H dehydrogenase (quinone) K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D YPTS_2318 NAD(P)H dehydrogenase (quinone) K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D YPTS_0481 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D YPTS_2147 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D YPTS_3780 Glutathione S-transferase domain protein K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D YPTS_3674 putative glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D YPTS_3755 oxidoreductase molybdopterin binding K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D YPTS_0844 cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D YPTS_0824 Di-haem cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D YPTS_2891 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPTS_2338 Redoxin domain protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPTS_2844 Dyp-type peroxidase family K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D YPTS_3998 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPTS_2138 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPTS_2979 globin K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D YPTS_2624 Rieske (2Fe-2S) domain protein K22443 cntA; carnitine monooxygenase subunit [EC:1.14.13.239]
D YPTS_2623 ferredoxin K22444 cntB; carnitine monooxygenase subunit [EC:1.14.13.239]
D YPTS_1652 lysine N6-hydroxylase/L-ornithine N5-oxygenase family K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252]
D YPTS_1784 Ferritin Dps family protein K02217 ftnA; ferritin [EC:1.16.3.2]
D YPTS_0753 multicopper oxidase type 3 K14588 cueO; cuproxidase [EC:1.16.3.4]
D YPTS_0088 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D YPTS_2896 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D YPTS_0549 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D YPTS_1507 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D YPTS_1484 ferredoxin K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D YPTS_0808 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D YPTS_2377 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D YPTS_2640 Methyltransferase type 11 K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D YPTS_1997 tellurite resistance protein TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D YPTS_0368 Radical SAM domain protein K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D YPTS_1166 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D YPTS_0527 GCN5-related N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D YPTS_4131 GCN5-related N-acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D YPTS_0559 GCN5-related N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D YPTS_0172 glutamine cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D YPTS_1496 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D YPTS_3627 conserved hypothetical protein K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333]
D YPTS_2609 glycosidase PH1107-related K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340]
D YPTS_0894 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D YPTS_3156 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D YPTS_0935 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D YPTS_1360 type III effector Hrp-dependent outers K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D YPTS_2394 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D YPTS_3551 glutamate-ammonia ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D YPTS_2396 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D YPTS_3841 Isocitrate dehydrogenase kinasephosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D YPTS_1232 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D YPTS_2202 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D YPTS_2730 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D YPTS_1400 diguanylate phosphodiesterase K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPTS_4052 diguanylate cyclase/phosphodiesterase K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPTS_2873 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPTS_3207 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPTS_3195 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPTS_3337 Endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D YPTS_0277 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPTS_0601 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPTS_2552 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPTS_1187 alpha/beta hydrolase fold protein K01175 ybfF; esterase [EC:3.1.-.-]
D YPTS_0944 protein of unknown function DUF1100 hydrolase family protein K11750 frsA; esterase FrsA [EC:3.1.-.-]
D YPTS_4053 glycoside hydrolase family 8 K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D YPTS_3220 glycosyl hydrolase 53 domain protein K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D YPTS_2474 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPTS_3857 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D YPTS_1696 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D YPTS_3043 YdjC family protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105]
D YPTS_1778 protein of unknown function DUF437 K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D YPTS_3719 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D YPTS_3552 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D YPTS_1009 Cof-like hydrolase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-]
D YPTS_2860 NUDIX hydrolase K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D YPTS_2565 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D YPTS_4166 ATPase associated with various cellular activities AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D YPTS_1361 class II aldolase/adducin family protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D YPTS_2224 transaldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-]
D YPTS_0448 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D YPTS_3194 Lyase catalytic K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21]
D YPTS_3140 cysteine desulfurase, catalytic subunit CsdA K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D YPTS_1861 Kelch repeat-containing protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24]
D YPTS_0404 L-rhamnose 1-epimerase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D YPTS_1363 Xylose isomerase domain protein TIM barrel K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D YPTS_0487 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D YPTS_2233 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D YPTS_2235 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D YPTS_2236 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D YPTS_0929 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D YPTS_0930 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D YPTS_0931 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D YPTS_0932 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D YPTS_0933 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D YPTS_1982 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D YPTS_0934 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D YPTS_0230 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D YPTS_2489 magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D YPTS_0766 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D YPTS_4148 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein
D YPTS_2962 ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S
D YPTS_1339 ferredoxin K11107 yfaE; ferredoxin
D YPTS_2232 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D YPTS_2231 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D YPTS_2237 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D YPTS_0423 4Fe-4S ferredoxin iron-sulfur binding domain protein K05796 hydN; electron transport protein HydN
D YPTS_4170 flavodoxin/nitric oxide synthase K06205 mioC; MioC protein
D YPTS_3299 flavodoxin K03840 fldB; flavodoxin II
D YPTS_2966 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D YPTS_3725 cytochrome b562 K15536 cybC; soluble cytochrome b562
D YPTS_0845 cytochrome b562 K15536 cybC; soluble cytochrome b562
D YPTS_2865 NapD family protein K02570 napD; periplasmic nitrate reductase NapD
D YPTS_2866 ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D YPTS_1183 flavodoxin K03839 fldA; flavodoxin I
D YPTS_2862 periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family K02569 napC; cytochrome c-type protein NapC
C 99983 Lipid metabolism
D YPTS_0464 acyl-CoA dehydrogenase domain protein K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
D YPTS_3073 NrdI protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D YPTS_2813 protein of unknown function DUF540 K06203 cysZ; CysZ protein
D YPTS_3106 Glyoxalase/bleomycin resistance protein/dioxygenase K08234 yaeR; glyoxylase I family protein
D YPTS_2336 peptidase M14 carboxypeptidase A K14054 mpaA; murein peptide amidase A
D YPTS_3346 alanine racemase domain protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D YPTS_2216 protein of unknown function DUF1049 K08992 lapA; lipopolysaccharide assembly protein A
D YPTS_2217 Tetratricopeptide TPR_2 repeat protein K19804 lapB; lipopolysaccharide assembly protein B
D YPTS_1508 glycosyl transferase family 25 K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D YPTS_0193 HemY protein K02498 hemY; HemY protein
D YPTS_0273 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D YPTS_0272 Sterol-binding domain protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D YPTS_3548 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D YPTS_0526 Sterol-binding domain protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D YPTS_0014 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D YPTS_3438 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
D YPTS_3530 multicopper oxidase type 3 K04753 sufI; suppressor of ftsI
C 99999 Others
D YPTS_3673 DoxX family protein K15977 K15977; putative oxidoreductase
D YPTS_0893 GCN5-related N-acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D YPTS_3729 Barstar (barnase inhibitor) K03623 yhcO; ribonuclease inhibitor
D YPTS_1492 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPTS_1525 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPTS_2493 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPTS_1747 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPTS_1144 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPTS_3067 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPTS_3774 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPTS_3776 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPTS_3775 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPTS_0312 regulator of RpoD, Rsd/AlgQ K07740 rsd; regulator of sigma D
D YPTS_1014 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D YPTS_3962 RNA binding S1 domain protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D YPTS_2325 protein of unknown function DUF306 Meta and HslJ K03668 hslJ; heat shock protein HslJ
D YPTS_1493 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D YPTS_0999 trigger factor K03545 tig; trigger factor
D YPTS_3756 Ferric reductase domain protein transmembrane component domain protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D YPTS_4153 formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein
D YPTS_3057 UreE urease accessory domain protein K03187 ureE; urease accessory protein
D YPTS_3056 Urease accessory protein UreF K03188 ureF; urease accessory protein
D YPTS_3055 urease accessory protein UreG K03189 ureG; urease accessory protein
D YPTS_3054 Urease accessory protein UreD K03190 ureD; urease accessory protein
D YPTS_1212 SsrA-binding protein K03664 smpB; SsrA-binding protein
D YPTS_3072 glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH
D YPTS_0142 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
D YPTS_3608 conserved hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D YPTS_3172 conserved hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D YPTS_3920 OsmC family protein K07397 yhfA; putative redox protein
D YPTS_3969 IscR-regulated protein YhgI K07400 nfuA; Fe/S biogenesis protein NfuA
D YPTS_0338 type III secretion system protein, YseE family K18984 ssaE; secretion system chaperone SsaE
C 99976 Replication and repair
D YPTS_1019 methylated-DNA--protein-cysteine methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D YPTS_3135 5'-3' exonuclease K01146 xni; protein Xni
D YPTS_0048 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D YPTS_1198 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D YPTS_4086 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D YPTS_0270 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC
D YPTS_1487 conserved hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D YPTS_3679 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D YPTS_0528 Excinuclease ABC C subunit domain protein K07461 K07461; putative endonuclease
D YPTS_3856 DNA protecting protein DprA K04096 smf; DNA processing protein
D YPTS_3599 conserved hypothetical protein K07474 xtmA; phage terminase small subunit
D YPTS_1503 AAA ATPase central domain protein K07478 ycaJ; putative ATPase
D YPTS_3854 DNA topoisomerase type IA zn finger domain protein K07479 yrdD; putative DNA topoisomerase
D YPTS_3246 P4 alpha zinc-binding domain protein K06919 K06919; putative DNA primase/helicase
D YPTS_3370 IS1 transposase K07480 insB; insertion element IS1 protein InsB
D YPTS_0415 IS1 transposase K07480 insB; insertion element IS1 protein InsB
D YPTS_4235 transposase IS3/IS911 family protein K07483 K07483; transposase
D YPTS_4262 transposase IS3/IS911 family protein K07483 K07483; transposase
D YPTS_0006 IS1661 DNA-binding protein K07483 K07483; transposase
D YPTS_3447 IS1661 DNA-binding protein K07483 K07483; transposase
D YPTS_4115 IS1661 DNA-binding protein K07483 K07483; transposase
D YPTS_4237 hypothetical protein K07483 K07483; transposase
D YPTS_3371 Insertion element protein K07489 K07489; transposase
D YPTS_3376 Insertion element protein K07489 K07489; transposase
D YPTS_0727 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPTS_1553 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPTS_0199 transposase mutator type K07493 K07493; putative transposase
D YPTS_1542 transposase mutator type K07493 K07493; putative transposase
D YPTS_1789 transposase mutator type K07493 K07493; putative transposase
D YPTS_2575 transposase mutator type K07493 K07493; putative transposase
D YPTS_4272 transposase mutator type K07493 K07493; putative transposase
D YPTS_0013 transposase mutator type K07493 K07493; putative transposase
D YPTS_1950 transposase mutator type K07493 K07493; putative transposase
D YPTS_0733 transposase mutator type K07493 K07493; putative transposase
D YPTS_0325 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D YPTS_4219 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D YPTS_0691 IS1400 transposase protein B K07497 K07497; putative transposase
D YPTS_4234 conserved hypothetical protein K07497 K07497; putative transposase
D YPTS_4261 conserved hypothetical protein K07497 K07497; putative transposase
D YPTS_0326 Integrase catalytic region K07497 K07497; putative transposase
D YPTS_1191 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D YPTS_4245 Integrase catalytic region K07497 K07497; putative transposase
D YPTS_3448 Integrase catalytic region K07497 K07497; putative transposase
D YPTS_4244 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D YPTS_4222 Integrase catalytic region K07497 K07497; putative transposase
D YPTS_0007 Integrase catalytic region K07497 K07497; putative transposase
D YPTS_1939 Integrase catalytic region K07497 K07497; putative transposase
D YPTS_1928 Integrase catalytic region K07497 K07497; putative transposase
D YPTS_1938 transposase-like protein K07497 K07497; putative transposase
D YPTS_4220 putative transposase K07497 K07497; putative transposase
D YPTS_4239 conserved hypothetical protein K07497 K07497; putative transposase
D YPTS_4250 hypothetical protein K07497 K07497; putative transposase
D YPTS_4116 Integrase catalytic region K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D YPTS_2347 phage shock protein A, PspA K03969 pspA; phage shock protein A
D YPTS_2344 phage shock protein PspD K03971 pspD; phage shock protein D
D YPTS_1036 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D YPTS_0192 amino acid permease-associated region K03293 TC.AAT; amino acid transporter, AAT family
D YPTS_2625 cyclic nucleotide-binding protein K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D YPTS_2584 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D YPTS_2355 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D YPTS_2823 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D YPTS_0961 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D YPTS_3081 permease for cytosine/purines uracil thiamine allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D YPTS_0602 nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D YPTS_0081 anion transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D YPTS_1454 YidE/YbjL duplication K07085 K07085; putative transport protein
D YPTS_4123 YidE/YbjL duplication K07085 K07085; putative transport protein
C 99978 Cell growth
D YPTS_2190 intracellular septation protein A K06190 ispZ; intracellular septation protein
D YPTS_0227 putative lipoprotein K27311 dcrB; inner membrane lipoprotein DcrB
D YPTS_0475 protein of unknown function DUF542 ScdA domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D YPTS_2135 SpoVR family protein K06415 spoVR; stage V sporulation protein R
D YPTS_0061 Peptidase M23 K22719 envC; murein hydrolase activator
C 99993 Cell motility
D YPTS_2535 membrane lipoprotein lipid attachment site K07337 K07337; penicillin-binding protein activator
D YPTS_1561 regulator of competence-specific genes K07343 tfoX; DNA transformation protein and related proteins
D YPTS_2447 Pili assembly chaperone, N-terminal K15540 ecpD; chaperone protein EcpD
D YPTS_2766 Pili assembly chaperone, N-terminal K15540 ecpD; chaperone protein EcpD
D YPTS_3132 Syd family protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D YPTS_0739 signaling modulator of AmpD, AmpE K03807 ampE; AmpE protein
D YPTS_0377 stress protein K05792 terA; tellurite resistance protein TerA
D YPTS_0380 stress protein K05795 terD; tellurium resistance protein TerD
D YPTS_0381 stress protein K05795 terD; tellurium resistance protein TerD
D YPTS_0376 stress protein K05791 terZ; tellurium resistance protein TerZ
D YPTS_2452 ProQ activator of osmoprotectant transporter ProP K03607 proQ; ProP effector
D YPTS_4026 UspA domain protein K06149 uspA; universal stress protein A
D YPTS_2301 UspA domain protein K14055 uspE; universal stress protein E
D YPTS_0268 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D YPTS_2226 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D YPTS_0026 GTP-binding protein TypA K06207 typA; GTP-binding protein
D YPTS_2005 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D YPTS_1169 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D YPTS_2143 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase
D YPTS_3553 SH3 domain protein K07184 ygiM; SH3 domain protein
D YPTS_0607 putative membrane protein Smp K07186 smp; membrane protein
D YPTS_0987 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D YPTS_1502 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D YPTS_2061 outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D YPTS_2737 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D YPTS_0181 lipopolysaccharide biosynthesis protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D YPTS_3449 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D YPTS_3772 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D YPTS_3114 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D YPTS_0809 Peptidase M23 K06194 nlpD; lipoprotein NlpD
D YPTS_0515 TPR repeat-containing protein K05803 nlpI; lipoprotein NlpI
D YPTS_2194 OmpW family protein K07275 ompW; outer membrane protein
D YPTS_0874 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein
D YPTS_2117 outer membrane lipoprotein, Slp family K07285 slp; outer membrane lipoprotein
D YPTS_0996 Uncharacterized lipoprotein K07286 yajG; uncharacterized lipoprotein
D YPTS_1648 AsmA family protein K07289 asmA; AsmA protein
D YPTS_4042 AsmA family protein K07290 yhjG; AsmA family protein
D YPTS_1072 protein of unknown function DUF107 K07340 ybbJ; inner membrane protein
D YPTS_1623 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D YPTS_2578 protein of unknown function UPF0118 K11744 tqsA; AI-2 transport protein TqsA
D YPTS_2221 osmotically inducible lipoprotein B precursor K04062 osmB; osmotically inducible lipoprotein OsmB
D YPTS_3300 Inner membrane CreD family protein K06143 creD; inner membrane protein
D YPTS_2742 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D YPTS_2739 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D YPTS_2951 transcriptional regulator, XRE family K15539 rodZ; cytoskeleton protein RodZ
D YPTS_3734 protein of unknown function DUF1656 K21695 aaeX; protein AaeX
D YPTS_3653 membrane protein K21908 hdeD; membrane protein HdeD
C 99994 Others
D YPTS_4190 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D YPTS_3893 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin
D YPTS_2587 periplasmic glucan biosynthesis protein MdoG K03670 mdoG; periplasmic glucans biosynthesis protein
D YPTS_0378 Tellurite resistance TerB K05793 terB; tellurite resistance protein TerB
D YPTS_0379 Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC
D YPTS_0426 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D YPTS_2090 CutC family protein K06201 cutC; copper homeostasis protein
D YPTS_0542 phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein
D YPTS_0655 ApaG domain protein K06195 apaG; ApaG protein
D YPTS_0201 iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D YPTS_0363 Haemin-degrading family protein K07225 hmuS; putative hemin transport protein
D YPTS_0367 protein of unknown function DUF1008 K07227 chuX; heme iron utilization protein
D YPTS_1028 DsrE family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D YPTS_2708 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D YPTS_1549 Mammalian cell entry related domain protein K06192 pqiB; paraquat-inducible protein B
D YPTS_2083 oxidoreductase domain protein K03810 mviM; virulence factor
D YPTS_0891 putative lipoprotein K05811 yfiM; putative lipoprotein
D YPTS_0598 transport-associated K04065 osmY; hyperosmotically inducible periplasmic protein
D YPTS_2077 PHP domain protein K04477 ycdX; putative hydrolase
D YPTS_3016 formate C-acetyltransferase glycine radical K06866 grcA; autonomous glycyl radical cofactor
D YPTS_0777 iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein
D YPTS_2388 FeS assembly scaffold SufA K05997 sufA; Fe-S cluster assembly protein SufA
D YPTS_2387 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D YPTS_2385 FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D YPTS_2871 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D YPTS_2438 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D YPTS_0028 ribonuclease BN K07058 K07058; membrane protein
D YPTS_4040 ribonuclease K07058 K07058; membrane protein
D YPTS_0429 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA
D YPTS_2383 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE
D YPTS_3141 cysteine desulfurase, sulfur acceptor subunit CsdE K02426 sufE; cysteine desulfuration protein SufE
D YPTS_2579 Rhodanese domain protein K07146 K07146; UPF0176 protein
D YPTS_2514 protein of unknown function DUF489 K07153 hflD; high frequency lysogenization protein
D YPTS_1650 ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF
D YPTS_2748 LemA family protein K03744 lemA; LemA protein
D YPTS_3903 SlyX family protein K03745 slyX; SlyX protein
D YPTS_3855 protein of unknown function DUF494 K03747 smg; Smg protein
D YPTS_0623 CreA family protein K05805 creA; CreA protein
D YPTS_3336 protein of unknown function DUF335 SprT K02742 sprT; SprT protein
D YPTS_2709 Sporulation domain protein K03749 dedD; DedD protein
D YPTS_3943 Sporulation domain protein K03112 damX; DamX protein
D YPTS_1635 protein of unknown function DUF218 K03748 sanA; SanA protein
D YPTS_2712 SNARE associated Golgi protein K03975 dedA; membrane-associated protein
D YPTS_2454 integral membrane protein, PqiA family K03808 pqiA; paraquat-inducible protein A
D YPTS_1548 integral membrane protein, PqiA family K03808 pqiA; paraquat-inducible protein A
D YPTS_2657 protein of unknown function DUF883 ElaB K05594 elaB; ElaB protein
D YPTS_2342 conserved hypothetical protein K08990 ycjF; putative membrane protein
D YPTS_0234 protein of unknown function DUF1145 K08993 yhhL; putative membrane protein
D YPTS_2164 SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein
D YPTS_1018 putative lipoprotein K09914 K09914; putative lipoprotein
D YPTS_3826 Maltose operon periplasmic K05775 malM; maltose operon periplasmic protein
D YPTS_3833 phosphate-starvation-inducible E K13256 psiE; protein PsiE
D YPTS_2750 alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA
C 99997 Function unknown
D YPTS_0828 ShET2 enterotoxin domain protein K06867 K06867; uncharacterized protein
D YPTS_3013 Ankyrin K06867 K06867; uncharacterized protein
D YPTS_3443 ShET2 enterotoxin domain protein K06867 K06867; uncharacterized protein
D YPTS_3206 Radical SAM domain protein K06871 K06871; uncharacterized protein
D YPTS_1621 Radical SAM domain protein K06871 K06871; uncharacterized protein
D YPTS_2872 Radical SAM domain protein K06871 K06871; uncharacterized protein
D YPTS_1116 type VI secretion system effector, Hcp1 family K06887 K06887; uncharacterized protein
D YPTS_2784 type VI secretion system effector, Hcp1 family K06887 K06887; uncharacterized protein
D YPTS_1927 type VI secretion system effector, Hcp1 family K06887 K06887; uncharacterized protein
D YPTS_2939 type VI secretion system effector, Hcp1 family K06887 K06887; uncharacterized protein
D YPTS_1883 type VI secretion system effector, Hcp1 family K06887 K06887; uncharacterized protein
D YPTS_1385 conserved hypothetical protein K06887 K06887; uncharacterized protein
D YPTS_0466 phospholipase/Carboxylesterase K06889 K06889; uncharacterized protein
D YPTS_2051 conserved hypothetical protein K06889 K06889; uncharacterized protein
D YPTS_1274 protein of unknown function UPF0005 K06890 K06890; uncharacterized protein
D YPTS_1945 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W
D YPTS_1881 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W
D YPTS_1871 late control D family protein K06905 D; Bacteriophage probable baseplate hub protein
D YPTS_1872 P2 GpU family protein K06906 gpU; phage tail protein
D YPTS_1876 tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D YPTS_1875 phage major tail tube protein K06908 FII; Bacteriophage tail tube protein
D YPTS_2343 protein of unknown function DUF463 YcjX family protein K06918 K06918; uncharacterized protein
D YPTS_1567 CoA-binding domain protein K06929 K06929; uncharacterized protein
D YPTS_2363 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D YPTS_1410 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D YPTS_1202 GTP-binding protein HSR1-related K06946 K06946; uncharacterized protein
D YPTS_4089 conserved hypothetical protein K06946 K06946; uncharacterized protein
D YPTS_2439 sodium:dicarboxylate symporter K06956 K06956; uncharacterized protein
D YPTS_3537 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein
D YPTS_2532 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein
D YPTS_1388 sulfatase K07014 K07014; uncharacterized protein
D YPTS_3916 alpha/beta hydrolase fold protein K07019 K07019; uncharacterized protein
D YPTS_0634 GPR1/FUN34/yaaH family protein K07034 K07034; uncharacterized protein
D YPTS_2885 protein of unknown function zinc metallopeptidase putative K07054 K07054; uncharacterized protein
D YPTS_3905 conserved hypothetical protein K07070 K07070; uncharacterized protein
D YPTS_2700 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein
D YPTS_2725 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D YPTS_2698 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D YPTS_0478 conserved hypothetical protein K07109 K07109; uncharacterized protein
D YPTS_0355 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D YPTS_3678 LppC family lipoprotein K07121 K07121; uncharacterized protein
D YPTS_2036 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D YPTS_2093 conserved hypothetical protein K07136 K07136; uncharacterized protein
D YPTS_3686 conserved hypothetical radical SAM protein K07139 K07139; uncharacterized protein
D YPTS_1545 MOSC domain containing protein K07140 K07140; MOSC domain-containing protein
D YPTS_1631 protein of unknown function DUF418 K07148 K07148; uncharacterized protein
D YPTS_4203 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D YPTS_3350 protein of unknown function DUF167 K09131 K09131; uncharacterized protein
D YPTS_1150 protein of unknown function DUF493 K09158 K09158; uncharacterized protein
D YPTS_2126 protein of unknown function UPF0153 K09160 K09160; uncharacterized protein
D YPTS_2689 YfbU family protein K09161 K09161; uncharacterized protein
D YPTS_2857 protein of unknown function DUF188 K09768 K09768; uncharacterized protein
D YPTS_2186 YCII-related K09780 K09780; uncharacterized protein
D YPTS_2141 protein of unknown function DUF444 K09786 K09786; uncharacterized protein
D YPTS_1526 protein of unknown function DUF343 K09791 K09791; uncharacterized protein
D YPTS_0060 protein of unknown function DUF610 YibQ K09798 K09798; uncharacterized protein
D YPTS_1214 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein
D YPTS_1683 protein of unknown function DUF496 K09802 K09802; uncharacterized protein
D YPTS_1947 protein of unknown function DUF497 K09803 K09803; uncharacterized protein
D YPTS_3324 protein of unknown function DUF541 K09807 K09807; uncharacterized protein
D YPTS_1489 protein of unknown function DUF535 K09824 virK; uncharacterized protein
D YPTS_0936 protein of unknown function DUF539 K05952 K05952; uncharacterized protein
D YPTS_1550 protein of unknown function DUF330 K09857 K09857; uncharacterized protein
D YPTS_0629 protein of unknown function DUF328 K09861 K09861; uncharacterized protein
D YPTS_0728 protein of unknown function DUF329 K09862 K09862; uncharacterized protein
D YPTS_0317 protein of unknown function DUF416 K09891 K09891; uncharacterized protein
D YPTS_0021 protein of unknown function DUF414 K09894 K09894; uncharacterized protein
D YPTS_3318 yecA family protein K09895 K09895; uncharacterized protein
D YPTS_0016 protein of unknown function DUF1040 K09896 K09896; uncharacterized protein
D YPTS_0141 protein of unknown function DUF413 K09897 K09897; uncharacterized protein
D YPTS_3917 protein of unknown function UPF0270 K09898 K09898; uncharacterized protein
D YPTS_2690 protein of unknown function DUF412 K09899 K09899; uncharacterized protein
D YPTS_2179 protein of unknown function DUF440 K09901 K09901; uncharacterized protein
D YPTS_2123 protein of unknown function DUF709 K09902 K09902; uncharacterized protein
D YPTS_1389 protein of unknown function DUF1414 K09904 K09904; uncharacterized protein
D YPTS_2089 protein of unknown function DUF991 K09907 K09907; uncharacterized protein
D YPTS_3696 protein of unknown function DUF1043 K09908 K09908; uncharacterized protein
D YPTS_1566 conserved hypothetical protein K09909 K09909; uncharacterized protein
D YPTS_0747 conserved hypothetical protein K09910 K09910; uncharacterized protein
D YPTS_1558 protein of unknown function DUF1047 K09911 K09911; uncharacterized protein
D YPTS_1698 conserved hypothetical protein K09912 K09912; uncharacterized protein
D YPTS_2082 protein of unknown function DUF480 K09915 K09915; uncharacterized protein
D YPTS_2148 protein of unknown function DUF1315 K09916 K09916; uncharacterized protein
D YPTS_1774 protein of unknown function UPF0181 K09917 K09917; uncharacterized protein
D YPTS_1777 YebG family protein K09918 K09918; uncharacterized protein
D YPTS_3539 protein of unknown function DUF1249 K09920 K09920; uncharacterized protein
D YPTS_0204 protein of unknown function DUF484 K09921 K09921; uncharacterized protein
D YPTS_3356 protein of unknown function DUF469 K09923 K09923; uncharacterized protein
D YPTS_0458 conserved hypothetical protein K09937 K09937; uncharacterized protein
D YPTS_2925 protein of unknown function DUF1508 K09946 K09946; uncharacterized protein
D YPTS_2810 conserved hypothetical protein K09954 K09954; uncharacterized protein
D YPTS_2808 protein of unknown function DUF925 K09962 K09962; uncharacterized protein
D YPTS_1069 GumN family protein K09973 K09973; uncharacterized protein
D YPTS_2024 protein of unknown function DUF886 K09975 K09975; uncharacterized protein
D YPTS_2321 conserved hypothetical protein K09978 K09978; uncharacterized protein
D YPTS_0536 conserved hypothetical protein K09979 K09979; uncharacterized protein
D YPTS_2185 conserved hypothetical protein K09981 K09981; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 9, 2024