+D GENES KO #

  KEGG Orthology (KO) - Yersinia pestis 91001 (biovar Microtus)

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:ypm00010] D YP_2602 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YP_3080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YP_0080 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YP_0563 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YP_0093 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D YP_3520 fbaA; fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YP_3323 fba; putative class-II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YP_0089 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D YP_1957 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D YP_3519 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D YP_1025 gpmA; phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YP_3728 gpmB; putative phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YP_0064 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D YP_0310 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YP_2180 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40] D YP_1907 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40] D YP_2196 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D YP_0265 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D YP_0266 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_2120 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D YP_1392 adhC; putative alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YP_1976 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D YP_0406 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YP_0028 putative hydrolases of the HAD superfamily K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D YP_2488 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YP_1956 putative enzymes related to aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] D YP_0139 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D YP_0886 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D YP_2620 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YP_2246 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:ypm00020] D YP_1048 gltA; citrate synthase GltA K01647 CS; citrate synthase [EC:2.3.3.1] D YP_2019 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D YP_0270 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D YP_1771 icdA; isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D YP_1043 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D YP_1042 sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_1040 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D YP_1041 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D YP_1045 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YP_1044 sdhB; succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YP_1047 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D YP_1046 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D YP_0515 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YP_0514 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YP_0513 frdC; fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YP_0512 frdD; fumarate reductase hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D D YP_0352 fumA; fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D YP_2061 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D YP_0567 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YP_0139 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D YP_0265 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D YP_0266 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D YP_2120 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:ypm00030] D YP_3080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YP_1909 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D YP_1011 3-carboxymuconate cyclase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D YP_1430 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D YP_0157 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D YP_3516 tktA3; transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YP_0372 tktA1; putative N-terminal region of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YP_0373 tktA2; C-terminal region of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YP_3718 talB; transaldolase B K00616 TALDO1; transaldolase [EC:2.2.1.2] D YP_3612 rpiA2; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D YP_1299 rpiA1; putative ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D YP_0334 rpiB1; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D YP_3745 deoC2; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D YP_3925 deoC3; putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D YP_1269 deoC1; putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D YP_3926 rbsK5; putative carbohydrate kinase K00852 rbsK; ribokinase [EC:2.7.1.15] D YP_0008 rbsK1; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D YP_3743 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D YP_2488 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YP_0619 phnN; PhnN protein K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D YP_1861 prsA; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D YP_2344 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D YP_1910 eda; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D YP_3988 ldhA3; putative D-isomer specific 2-hydroxyaciddehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D YP_3315 gntV; putative gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] D YP_2351 idnK; putative thermosensitive gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12] D YP_3353 kdgK; 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D YP_3520 fbaA; fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YP_3323 fba; putative class-II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YP_0563 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YP_0093 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D YP_0080 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:ypm00040] D YP_3757 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D YP_3357 pelY; periplasmic pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2] D YP_1748 pelW; exopolygalacturonate lyase K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9] D YP_1738 ogl; oligogalacturonate lyase K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6] D YP_1750 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D YP_3535 kduD2; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D YP_1749 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D YP_2899 uxaC; uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D YP_2900 uxaB; altronate oxidoreductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58] D YP_2901 uxaA; altronate hydrolase K01685 uxaA; altronate hydrolase [EC:4.2.1.7] D YP_1308 uxuA; mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D YP_1309 mtlD1; putative D-mannonate oxidoreductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D YP_1973 ugd; putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D YP_1428 galU1; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_1429 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_0353 sgbK; putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53] D YP_0354 sgbU; putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D YP_0360 araD1; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D YP_2029 araD3; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D YP_0157 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D YP_2049 araA; L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4] D YP_2050 araB1; L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16] D YP_3401 xylB2; xylulose kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D YP_1300 xylB1; putative carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D YP_3400 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D YP_0485 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D YP_0483 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D YP_2112 dalD; putative mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D YP_3324 hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15] D YP_3910 araB2; putative carbohydrate kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47] C 00051 Fructose and mannose metabolism [PATH:ypm00051] D YP_0724 nagC1; Transcriptional regulators K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D YP_2060 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D YP_2298 manB2; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YP_0829 manB1; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YP_0826 wcaG2; putative nucleotide di-P-sugar epimerase or dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D YP_1455 dgoA1; O-succinylbenzoate synthase-related enzymes K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68] D YP_1453 ucpA; putative oxidoreductase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434] D YP_0484 rhaA; L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14] D YP_0485 rhaB; rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5] D YP_0483 rhaD; rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19] D YP_0080 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YP_0563 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YP_0093 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D YP_3978 mtlD2; mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17] D YP_1293 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D YP_3400 xylA; xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5] D YP_2112 dalD; putative mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11] D YP_3520 fbaA; fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YP_3323 fba; putative class-II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YP_0089 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D YP_0334 rpiB1; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D YP_1292 fruA; PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D YP_1634 manX1; PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D YP_1635 manY; PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component D YP_1636 manZ; PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component D YP_3979 mtlA; PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D YP_2373 putative haloacid dehalogenase-like hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50] D YP_2233 putative phosphatase K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68] C 00052 Galactose metabolism [PATH:ypm00052] D YP_1022 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D YP_1021 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D YP_1020 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D YP_1428 galU1; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_1429 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_2488 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YP_2602 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YP_1785 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D YP_3549 bgaB; putative beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23] D YP_1469 galA; alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] D YP_0080 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YP_3540 agaY; putative aldolase K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D YP_3528 agaZ; putative tagatose 6-phosphate kinase K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ D YP_3545 putative glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D YP_0732 malZ; putative maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D YP_3533 manX3; Phosphotransferase system, mannose/fructose-specific component IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D YP_3530 manX2; putative PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D YP_3531 putative PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D YP_3532 putative PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D YP_3534 nagA2; 2-deoxy-D-gluconate 3-dehydrogenase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25] D YP_3529 agaS; putative phosphosugar isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-] C 00053 Ascorbate and aldarate metabolism [PATH:ypm00053] D YP_1973 ugd; putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D YP_2380 ptsN1; phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D YP_2381 sgaB; Phosphotransferase system component IIB of unknown specificity K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D YP_2382 sgaT; putative membrane protein K03475 ulaA; ascorbate PTS system EIIC component D YP_0354 sgbU; putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22] D YP_0360 araD1; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D YP_2029 araD3; L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4] D YP_0353 sgbK; putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53] C 00500 Starch and sucrose metabolism [PATH:ypm00500] D YP_3545 putative glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D YP_0732 malZ; putative maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D YP_1428 galU1; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_1429 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_2934 bglX2; putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YP_1160 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YP_2482 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D YP_2480 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D YP_2481 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D YP_0886 bglA; 6-phospho-beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D YP_0815 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D YP_3302 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D YP_3301 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D YP_3304 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D YP_3300 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D YP_3303 glgX; putative alpha-amylase K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196] D YP_3989 malS; alpha-amylase protein K01176 AMY; alpha-amylase [EC:3.2.1.1] D YP_0127 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D YP_2620 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YP_3847 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D YP_3848 treC; putative trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93] D YP_2488 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YP_2602 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YP_3080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YP_0724 nagC1; Transcriptional regulators K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ypm00520] D YP_2239 bglX1; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D YP_2620 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YP_1085 nagE; pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D YP_1758 nagC4; Transcriptional regulators K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59] D YP_1087 nagA1; putative N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D YP_1086 nagB; putative glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D YP_0724 nagC1; Transcriptional regulators K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D YP_4025 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D YP_0583 mrsA; putative phosphoglucomutase/phosphomannomutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D YP_4026 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D YP_2532 putative glucokinase protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D YP_2158 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D YP_3824 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D YP_3288 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D YP_2644 nagC7; putative sugar kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60] D YP_2646 nanE; Putative N-acetylmannosamine-6-phosphate epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9] D YP_2647 dapA1; putative N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3] D YP_3181 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D YP_3182 rffD; putative UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D YP_2207 wcaG9; putative formyl transferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D YP_2209 wecE; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D YP_2208 pmrF; putative glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D YP_2206 cDA12; putative xylanase/chitin deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D YP_2246 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D YP_2602 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YP_2488 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YP_1428 galU1; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_1429 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_1973 ugd; putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D YP_1022 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D YP_1021 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D YP_1020 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D YP_1634 manX1; PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D YP_1635 manY; PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component D YP_1636 manZ; PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component D YP_3080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YP_2060 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D YP_2298 manB2; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YP_0829 manB1; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YP_0826 wcaG2; putative nucleotide di-P-sugar epimerase or dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D YP_0815 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D YP_0816 wcaG1; putative CDP-D-glucose-4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D YP_0817 ddhC; putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D YP_0814 ddhD; cdp-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D YP_0818 prt; paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342] D YP_3302 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:ypm00620] D YP_0406 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YP_2120 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D YP_0265 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D YP_0266 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_1210 pflB; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D YP_1976 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D YP_1392 adhC; putative alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YP_2377 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D YP_2378 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D YP_2180 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40] D YP_1907 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40] D YP_2790 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D YP_3887 accB; biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D YP_3888 accC2; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D YP_2396 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D YP_1337 acyP; Acylphosphatases K01512 acyP; acylphosphatase [EC:3.6.1.7] D YP_1457 lldD; L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D YP_1237 poxB; pyruvate dehydrogenase (cytochrome) K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1] D YP_2115 ldhA1; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D YP_0960 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12] D YP_2167 gloA1; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D YP_2770 gloB3; putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D YP_1184 gloB1; metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D YP_3988 ldhA3; putative D-isomer specific 2-hydroxyaciddehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D YP_1401 sfcA1; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D YP_2657 sfcA2; putative multimodular enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D YP_0567 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YP_0352 fumA; fumarate hydratase, class I K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D YP_2061 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D YP_0515 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YP_0514 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YP_0513 frdC; fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YP_0512 frdD; fumarate reductase hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D D YP_3121 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D YP_0139 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D YP_2196 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D YP_3088 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D YP_3649 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ypm00630] D YP_3087 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1] D YP_0406 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YP_3088 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9] D YP_0567 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YP_1048 gltA; citrate synthase GltA K01647 CS; citrate synthase [EC:2.3.3.1] D YP_2019 acnA; aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D YP_0270 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D YP_0931 katA; catalase K03781 katE; catalase [EC:1.11.1.6] D YP_3988 ldhA3; putative D-isomer specific 2-hydroxyaciddehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D YP_0158 gph; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D YP_0025 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YP_2548 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D YP_3602 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D YP_3604 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_3603 gcsH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D YP_3343 glxK; putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D YP_2311 leuB1; tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D YP_1910 eda; KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D YP_3969 fdoH; formate dehydrogenase-O, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D YP_3968 fdoI; formate dehydrogenase, cytochrome b556 protein K00127 fdoI; formate dehydrogenase subunit gamma D YP_1970 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D YP_1713 hutG; putative N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:ypm00640] D YP_0406 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YP_2377 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D YP_2378 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_1210 pflB; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D YP_3883 qor3; putative zinc-binding dehydrogenase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YP_2790 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D YP_3887 accB; biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D YP_3888 accC2; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D YP_2396 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D YP_2711 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YP_1041 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D YP_1040 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D YP_1137 putA1; putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D YP_0270 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] D YP_1332 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D YP_2993 putative iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:ypm00650] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YP_4011 putative paraquat-inducible protein B K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D YP_1976 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D YP_2311 leuB1; tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D YP_1045 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YP_1044 sdhB; succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YP_1047 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D YP_1046 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D YP_0515 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YP_0514 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YP_0513 frdC; fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YP_0512 frdD; fumarate reductase hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D D YP_2711 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YP_1301 gabD1; putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YP_1210 pflB; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D YP_2120 nifJ; putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D YP_1349 pksG; putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D YP_3646 ilvI; acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_3147 ilvG; acetolactate synthase isozyme II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_2079 ilvB2; putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_3647 ilvH; acetolactate synthase isozyme III small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YP_2080 ilvN; putative acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YP_3148 ilvM; acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:ypm00660] D YP_3646 ilvI; acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_3147 ilvG; acetolactate synthase isozyme II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_2079 ilvB2; putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_3647 ilvH; acetolactate synthase isozyme III small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YP_2080 ilvN; putative acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YP_3148 ilvM; acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D YP_1668 aCH1; putative 4-hydroxybutyrate coenzyme A transferase K18288 ict-Y; itaconate CoA-transferase [EC:2.8.3.-] D YP_1041 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D YP_1040 sucD; succinyl-CoA synthetase alpha chain K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D YP_1669 maoC; putative transcriptional regulator K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56] D YP_1670 citE2; putative citrate lyase beta chain K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25] D YP_3651 leuC; 3-isopropylmalate isomerase (dehydratase) subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D YP_3652 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D YP_3650 leuB2; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:ypm00562] D YP_2555 suhB; putative inositol monophosphatase familyprotein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D YP_1778 appA; putative histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] D YP_1129 iolE; putative myo-inositol catabolism protein iolB K03335 iolE; inosose dehydratase [EC:4.2.1.44] D YP_1136 ilvB1; putative thiamine pyrophosphate-dependent protein K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D YP_1128 hypothetical protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D YP_1130 rbsK2; putative carbohydrate kinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D YP_1137 putA1; putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D YP_0089 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:ypm00190] D YP_2366 nuoA; NADH dehydrogenase I chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D YP_2365 nuoB; NADH dehydrogenase I chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D YP_2364 nuoD; NADH dehydrogenase I chain C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2] D YP_2363 nuoE; NADH dehydrogenase I chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D YP_2362 nuoF; NADH dehydrogenase I chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D YP_2361 nuoG; NADH dehydrogenase I chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D YP_2360 nuoH; NADH dehydrogenase I chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D YP_2359 nuoI; NADH Dehydrogenase I chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D YP_2358 nuoJ; NADH dehydrogenase I chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D YP_2357 nuoK; NADH dehydrogenase i chain k K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D YP_2356 nuoL; NADH dehydrogenase I chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D YP_2355 nuoM; NADH dehydrogenase I chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D YP_2354 nuoN; NADH dehydrogenase I chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D YP_2237 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D YP_1045 sdhA; succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YP_1044 sdhB; succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YP_1047 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D YP_1046 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D YP_0515 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YP_0514 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YP_0513 frdC; fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YP_0512 frdD; fumarate reductase hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D D YP_0763 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D YP_0764 cyoD; cytochrome O ubiquinol oxidase subunit CyoD K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV D YP_0765 cyoC; cytochrome O ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III D YP_0766 cyoB; cytochrome O ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3] D YP_0767 cyoA; cytochrome O ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3] D YP_1039 cydA; cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D YP_1038 cydB; cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D YP_4030 atpA; ATP synthase alpha subunit protein K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D YP_4028 atpD; ATP synthase beta subunit protein K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D YP_4029 atpG; ATP synthase gamma subunit protein K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D YP_4031 atpH; ATP synthase delta subunit protein K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D YP_4027 atpC; ATP synthase epsilon subunit protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D YP_4034 atpB; ATP synthase subunit B protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a D YP_4032 atpF; ATP synthase subunit B protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D YP_4033 atpE; ATP synthase subunit C protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D YP_0562 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D YP_2703 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:ypm00680] D YP_1392 adhC; putative alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YP_1391 putative esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D YP_3969 fdoH; formate dehydrogenase-O, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D YP_3968 fdoI; formate dehydrogenase, cytochrome b556 protein K00127 fdoI; formate dehydrogenase subunit gamma D YP_0498 fdhF; formate dehydrogenase H K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-] D YP_2548 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D YP_0310 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YP_3121 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] D YP_0567 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YP_3520 fbaA; fructose-bisphosphate aldolase class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YP_3323 fba; putative class-II fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D YP_0563 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YP_0093 glpX; fructose 1,6-bisphosphatase II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D YP_0080 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YP_2279 hypothetical protein K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147] D YP_2377 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D YP_2378 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D YP_0406 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YP_2196 ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D YP_1025 gpmA; phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YP_3728 gpmB; putative phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YP_0064 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D YP_3611 serA2; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YP_1303 serA1; putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YP_1204 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D YP_3740 serB3; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:ypm00910] D YP_2661 napA; periplasmic nitrate reductase precursor K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D YP_2660 napB; cytochrome C-type protein NapB precursor K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D YP_0163 nirB; nitrite reductase K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15] D YP_0162 nirD; nitrite reductase small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15] D YP_1235 hcp2; putative prismane protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D YP_3334 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D YP_0025 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YP_3811 gltB; glutamate synthase [NADPH] large chain precursor K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D YP_3812 gltD2; glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D YP_2837 cynT2; putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D YP_0278 cynT1; putative carbonic anhdrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:ypm00920] D YP_2639 cysP; thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D YP_0081 sbp; exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D YP_2638 cysT; sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D YP_2637 cysW; sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D YP_2636 cysA; sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D YP_0181 tauA1; putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein D YP_0183 tauC1; putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein D YP_0182 tauB1; putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D YP_0184 tauD; putative taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D YP_3921 ssuC; putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein D YP_3920 ssuB; putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D YP_3922 ssuD; alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34] D YP_3924 ssuE; putative NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D YP_0322 cysN; ATP-sulfurylase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D YP_0321 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D YP_0323 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D YP_0554 cysQ; inositol monophosphatase family protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D YP_0314 cysJ; sulfite reductase [NADPH] flavoprotein alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] D YP_0315 cysI; sulfite reductase [NADPH] hemoprotein beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D YP_0942 sseA; putative sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D YP_0124 glpE; thiosulfate sulfurtransferase K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1] D YP_0070 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D YP_3381 cysM2; pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D YP_0784 cysK1; putative Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D YP_2617 cysK2; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D YP_3089 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D YP_0117 metC1; Cystathionine beta-lyases/cystathionine gamma-synthases K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D YP_0361 dmsA1; anaerobic dimethyl sulfoxide reductase subunit A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D YP_2590 dmsA2; putative dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D YP_0362 dmsB1; anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D YP_2591 dmsB2; putative dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D YP_0363 dmsC1; anaerobic dimethyl sulfoxide reductase subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D YP_2592 dmsC2; anaerobic dimethyl sulfoxide reductase subunit B K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:ypm00061] D YP_2790 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D YP_3887 accB; biotin carboxyl carrier protein of acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D YP_3888 accC2; biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D YP_2396 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D YP_2254 acpP3; acyl carrier protein K02078 acpP; acyl carrier protein D YP_2256 fabD2; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YP_1355 fabD1; putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YP_2257 fabH2; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D YP_1347 fabF3; putative beta-ketoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YP_2406 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YP_2253 fabF4; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D YP_2255 fabG10; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YP_1348 fabG6; putative beta-ketoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YP_0875 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D YP_2795 fabZ2; (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YP_1346 fabZ1; putative myristoyl-acyl carrier dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YP_4011 putative paraquat-inducible protein B K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D YP_3645 fAA1; putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YP_1917 fadD; long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:ypm00071] D YP_3281 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YP_2418 paaJ; putative 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YP_0688 caiA; putative acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-] D YP_3645 fAA1; putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YP_1917 fadD; long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YP_2864 aas; Aas bifunctional protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D YP_1392 adhC; putative alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YP_1976 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:ypm00561] D YP_3343 glxK; putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D YP_0337 dAK1_1; putative dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D YP_0338 dAK1_2; Dihydroxyacetone kinase K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D YP_0094 glpK1; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D YP_0374 glpK2; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D YP_0468 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D YP_2258 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D YP_2962 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D YP_2988 plsC2; putative acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D YP_0469 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D YP_1469 galA; alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00564 Glycerophospholipid metabolism [PATH:ypm00564] D YP_0068 gpsA; glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D YP_3222 glpA; anaerobic glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D YP_3299 glpD; aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D YP_3223 glpB; sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3] D YP_3224 glpC; anaerobic glycerol-3-phosphate dehydrogenase subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C D YP_0468 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D YP_2962 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D YP_2988 plsC2; putative acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D YP_0469 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D YP_3214 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D YP_3218 pldB2; putative lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5] D YP_3221 glpQ; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D YP_3257 ugpQ4; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D YP_2864 aas; Aas bifunctional protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] D YP_3349 cdh; CDP-diacylglycerol phosphotidylhydrolase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26] D YP_2800 cdsA2; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D YP_0865 cdsA1; putative phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D YP_0658 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D YP_0519 psd; phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D YP_1526 pgsA2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D YP_0752 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D YP_2022 pgpB5; phosphatidylglycerophosphatase B K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27] D YP_2533 serB2; putative membrane protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27] D YP_1986 cls; cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism [PATH:ypm00565] D YP_3214 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00600 Sphingolipid metabolism [PATH:ypm00600] D YP_1831 wcaG7; Nucleoside-diphosphate-sugar epimerases K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D YP_1785 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] D YP_1469 galA; alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22] C 00590 Arachidonic acid metabolism D YP_3214 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00591 Linoleic acid metabolism D YP_3214 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] C 00592 alpha-Linolenic acid metabolism [PATH:ypm00592] D YP_3214 pldA; phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4] D YP_3281 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YP_2418 paaJ; putative 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids [PATH:ypm01040] D YP_0844 tesA; putative acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D YP_0790 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D YP_1994 putative acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:ypm00230] D YP_2979 mutT7; putative MutT-family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D YP_0145 mutT1; putative hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-] D YP_3743 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D YP_2488 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YP_1861 prsA; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D YP_2392 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D YP_3092 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D YP_2697 purN; putative phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D YP_1618 purT; phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D YP_2536 purL; phosphoribosylformyl-glycineamide synthetase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D YP_2696 purI; putative phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D YP_0847 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit PurK K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D YP_0848 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit PurE K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D YP_2681 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D YP_1766 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D YP_3091 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D YP_3382 apt2; putative phosphoribosyl transferase protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D YP_0806 apt1; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D YP_0329 surE; stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D YP_0142 putative hydrolases of the HAD superfamily K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-] D YP_0831 gsk; inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73] D YP_0988 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D YP_3742 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D YP_0722 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D YP_0655 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D YP_0277 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D YP_2737 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D YP_2749 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D YP_3729 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D YP_3497 Xanthosine triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D YP_0708 gpt; xanthine-guanine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D YP_2736 guaA; putative GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D YP_0256 guaC; GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7] D YP_0041 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D YP_0923 nrdA; ribonucleoside-diphosphate reductase 1 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YP_pMT047 putative ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YP_2451 nrdE; ribonucleoside-diphosphate reductase 2 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YP_0924 nrdB; ribonucleoside-diphosphate reductase 1 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YP_pMT046 putative ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YP_2450 nrdF; ribonucleoside-diphosphate reductase 2 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YP_0631 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D YP_0302 dgt; deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D YP_2370 putative hydrolases of HD superfamily K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D YP_0039 spoT; guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D YP_3175 gppA; Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D YP_2704 ppx; putative exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D YP_0306 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5] D YP_3199 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1] D YP_0959 cyaB; adenylate cyclase 2 K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D YP_2500 hypothetical protein K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17] D YP_0534 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D YP_2074 amn; putative AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D YP_2818 putative Rossmann fold nucleotide-binding protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D YP_0553 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D YP_0812 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D YP_0308 mazG; putative pyrophosphatase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D YP_2981 icc; Icc protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53] D YP_3689 apaH; bis(5'nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41] D YP_0323 cysC; adenosine 5'-phosphosulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D YP_0322 cysN; ATP-sulfurylase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D YP_0321 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D YP_0683 argE1; putative amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D YP_2468 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D YP_2467 ureB; urease (urea amidohydrolase) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D YP_2466 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D YP_0671 gatA; putative amidase K22601 hpxY; oxamate carbamoyltransferase [EC:2.1.3.5] C 00240 Pyrimidine metabolism [PATH:ypm00240] D YP_3697 carB; carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D YP_3698 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D YP_3842 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D YP_3843 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D YP_2265 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D YP_1178 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D YP_0046 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D YP_2026 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D YP_2805 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D YP_2749 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D YP_0308 mazG; putative pyrophosphatase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D YP_3878 maf1; Nucleotide-binding protein implicated in inhibition of septum formation K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D YP_2906 putative metal-dependent hydrolase K07043 upp; UTP pyrophosphatase [EC:3.6.1.-] D YP_0309 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D YP_1202 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D YP_1967 nudG; putative pyrophosphohydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65] D YP_1413 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D YP_0329 surE; stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D YP_2081 haloacid dehalogenase-like hydrolase family protein K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-] D YP_3263 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3] D YP_0722 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D YP_2695 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D YP_0553 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] D YP_2818 putative Rossmann fold nucleotide-binding protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-] D YP_1402 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D YP_0164 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D YP_0631 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D YP_1414 dcd2; 2'-deoxycytidine 5'-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D YP_0923 nrdA; ribonucleoside-diphosphate reductase 1 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YP_pMT047 putative ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YP_2451 nrdE; ribonucleoside-diphosphate reductase 2 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YP_0924 nrdB; ribonucleoside-diphosphate reductase 1 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YP_pMT046 putative ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YP_2450 nrdF; ribonucleoside-diphosphate reductase 2 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YP_2370 putative hydrolases of HD superfamily K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89] D YP_2249 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D YP_0048 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D YP_3744 deoA; Thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D YP_1975 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D YP_2875 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:ypm00250] D YP_1183 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YP_2514 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D YP_1207 ansB; putative L-asparaginase II precursor K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D YP_1961 ansA; L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D YP_0003 asnA; aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D YP_1090 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D YP_2369 aat2; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D YP_0502 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D YP_1458 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D YP_3125 argH; putative argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D YP_0534 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D YP_1766 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D YP_3842 pyrB; aspartate carbamoyltransferase catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D YP_3843 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D YP_2711 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YP_1301 gabD1; putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YP_3811 gltB; glutamate synthase [NADPH] large chain precursor K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D YP_3812 gltD2; glutamate synthase [NADPH] small chain K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D YP_3334 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D YP_1542 putA2; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D YP_0025 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YP_3697 carB; carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D YP_3698 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D YP_3492 glsA2; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YP_1682 glsA1; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YP_4025 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D YP_2392 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:ypm00260] D YP_3081 lysC2; lysine-sensitive aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4] D YP_3723 thrA; bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D YP_0118 metL; bifunctional aspartokinase/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D YP_3311 asd2; aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D YP_3722 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D YP_3721 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D YP_1239 ltaA; L-allo-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D YP_2548 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D YP_3988 ldhA3; putative D-isomer specific 2-hydroxyaciddehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215] D YP_3343 glxK; putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D YP_1025 gpmA; phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YP_3728 gpmB; putative phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YP_0064 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D YP_3611 serA2; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YP_1303 serA1; putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YP_1204 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D YP_3740 serB3; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D YP_0060 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D YP_0061 tdh1; threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103] D YP_3602 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D YP_3604 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_3603 gcsH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D YP_0658 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D YP_0994 betA; choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1] D YP_0993 betB; betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D YP_1622 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D YP_3997 tdcB; pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D YP_3151 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D YP_2405 racX; putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D YP_2001 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D YP_2002 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D YP_1418 ysuJ; putative decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86] C 00270 Cysteine and methionine metabolism [PATH:ypm00270] D YP_0070 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D YP_3381 cysM2; pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D YP_0784 cysK1; putative Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D YP_2617 cysK2; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D YP_2996 metC3; putative cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YP_0433 metC2; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YP_2630 malY; putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YP_3084 metH; 5-Methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D YP_3261 metE; 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D YP_3512 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D YP_0273 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D YP_0274 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D YP_2275 ypeI; N-acylhomoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D YP_3455 yspI; N-acylhomoserine lactone synthase YspI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D YP_0301 mtn; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D YP_0655 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D YP_0477 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D YP_1728 GAF domain-containing protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D YP_0386 luxS; autoinducer-2 production protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D YP_3081 lysC2; lysine-sensitive aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4] D YP_3723 thrA; bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D YP_0118 metL; bifunctional aspartokinase/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D YP_3311 asd2; aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D YP_3089 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D YP_0117 metC1; Cystathionine beta-lyases/cystathionine gamma-synthases K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D YP_3149 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YP_0385 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D YP_3507 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D YP_1183 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YP_0942 sseA; putative sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D YP_2405 racX; putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D YP_1548 Acd; putative deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D YP_0567 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D YP_1622 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D YP_2635 cysM1; cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] D YP_3611 serA2; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YP_1303 serA1; putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YP_1204 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:ypm00280] D YP_3149 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YP_3281 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YP_2418 paaJ; putative 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YP_3899 mmsB; putative 2-hydroxy-3-oxopropionate reductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D YP_1137 putA1; putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D YP_1349 pksG; putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ypm00290] D YP_3997 tdcB; pyridoxal-phosphate dependent enzyme K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D YP_3151 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D YP_3651 leuC; 3-isopropylmalate isomerase (dehydratase) subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D YP_3652 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D YP_3650 leuB2; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D YP_3646 ilvI; acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_3147 ilvG; acetolactate synthase isozyme II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_2079 ilvB2; putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_3647 ilvH; acetolactate synthase isozyme III small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YP_2080 ilvN; putative acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YP_3148 ilvM; acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D YP_3158 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D YP_3150 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D YP_3149 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YP_3991 avtA3; alanine-alpha-ketoisovalerate K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D YP_2369 aat2; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D YP_3649 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:ypm00300] D YP_3081 lysC2; lysine-sensitive aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4] D YP_3723 thrA; bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D YP_0118 metL; bifunctional aspartokinase/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D YP_3311 asd2; aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D YP_2684 dapA2; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D YP_3699 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D YP_2810 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D YP_0172 argD; acetylornithine delta-aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D YP_2675 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D YP_3202 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D YP_2861 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D YP_1678 aRO81; putative aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D YP_3634 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D YP_3633 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:ypm00310] D YP_1042 sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YP_2405 racX; putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D YP_1301 gabD1; putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D YP_1196 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93] D YP_2194 glcD3; FAD/FMN-containing dehydrogenases K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-] C 00220 Arginine biosynthesis [PATH:ypm00220] D YP_0638 argI; ornithine carbamoyltransferase chain I K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D YP_1458 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D YP_3125 argH; putative argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D YP_2468 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D YP_2467 ureB; urease (urea amidohydrolase) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D YP_2466 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] D YP_3492 glsA2; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YP_1682 glsA1; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YP_0025 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YP_3334 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4] D YP_1183 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YP_2369 aat2; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D YP_2828 argA; amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1] D YP_3124 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D YP_3123 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D YP_0172 argD; acetylornithine delta-aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D YP_3122 argE2; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:ypm00330] D YP_0164 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D YP_0936 adiA; putative amino acid decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19] D YP_3513 speA; biosynthetic arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D YP_3503 Peptidylarginine deiminase-related enzymes K10536 aguA; agmatine deiminase [EC:3.5.3.12] D YP_3504 putative carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D YP_3481 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D YP_0274 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D YP_0273 speD; S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D YP_2698 speG; spermidine acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D YP_1708 astA; arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109] D YP_1710 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23] D YP_1707 cstC; acetylornithine delta-aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D YP_1709 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71] D YP_1711 Succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96] D YP_3500 proC; putative pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D YP_1542 putA2; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D YP_0711 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D YP_0712 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D YP_1612 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D YP_1183 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:ypm00340] D YP_1438 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D YP_1431 hisI; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D YP_1433 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D YP_1434 hisH; amidotransferase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D YP_1432 hisF; histidine biosynthesic protein (cyclase) K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D YP_1435 hisB1; histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15] D YP_1436 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YP_1437 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D YP_3379 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D YP_3380 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D YP_1714 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D YP_1824 ssnA; putative chlorohydrolase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D YP_1713 hutG; putative N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00350 Tyrosine metabolism [PATH:ypm00350] D YP_1183 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YP_1436 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YP_0477 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D YP_0943 dcd1; putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D YP_1392 adhC; putative alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YP_1976 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D YP_1624 hpaB; 4-hydroxyphenylacetate 3-monooxygenase K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9] D YP_1623 hpaC; 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D YP_1629 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15] D YP_1630 hpaE; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60] D YP_1628 hpaF; 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] D YP_1627 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] D YP_1626 hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D YP_1301 gabD1; putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00360 Phenylalanine metabolism [PATH:ypm00360] D YP_0943 dcd1; putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D YP_1183 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YP_1436 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YP_0477 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D YP_1948 dadA1; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D YP_0367 katG; catalase K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00380 Tryptophan metabolism [PATH:ypm00380] D YP_1042 sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YP_0943 dcd1; putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D YP_0931 katA; catalase K03781 katE; catalase [EC:1.11.1.6] D YP_0367 katG; catalase K03782 katG; catalase-peroxidase [EC:1.11.1.21] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ypm00400] D YP_2198 aroH; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YP_0398 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YP_1026 aroG; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YP_0154 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D YP_3886 aroQ; putative class II dehydroquinase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D YP_0245 aroE1; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D YP_0153 aroK1; shikimate kinase I K00891 aroK; shikimate kinase [EC:2.7.1.71] D YP_0720 aroK2; Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D YP_1203 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D YP_2412 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D YP_2006 trpE2; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D YP_2005 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D YP_2004 trpD1; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D YP_2003 trpC; tryptophan biosynthesis protein TrpCF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24] D YP_2001 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D YP_2002 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D YP_0399 tyrA; T-protein K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D YP_1243 pheA2; putative chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D YP_0400 pheA1; Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D YP_0344 artI1; putative extracellular solute-binding protein K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91] D YP_1183 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YP_1436 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YP_0477 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:ypm00410] D YP_0282 panD; aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D YP_2711 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YP_0283 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YP_1137 putA1; putative aldehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:ypm00430] D YP_0184 tauD; putative taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17] D YP_2378 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D YP_2377 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:ypm00440] D YP_0625 phnI; PhnI protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D YP_0627 phnG; PhnG protein K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D YP_0626 phnH; PhnH protein K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D YP_0621 phnL1; phosphonates transport ATP-binding protein K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D YP_0620 phnM; PhnM protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D YP_0624 phnJ; PhnJ protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D YP_0618 phnP; PhnP protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:ypm00450] D YP_0117 metC1; Cystathionine beta-lyases/cystathionine gamma-synthases K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D YP_2996 metC3; putative cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YP_0433 metC2; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YP_2630 malY; putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YP_3084 metH; 5-Methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D YP_3261 metE; 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D YP_2187 csdB1; putative selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D YP_1219 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D YP_0322 cysN; ATP-sulfurylase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D YP_0321 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D YP_1964 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D YP_3966 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D YP_1411 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:ypm00460] D YP_2934 bglX2; putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YP_1160 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YP_1207 ansB; putative L-asparaginase II precursor K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D YP_1961 ansA; L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D YP_0003 asnA; aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D YP_2548 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:ypm00470] D YP_0476 alr; alanine racemase (biosynthetic) K01775 alr; alanine racemase [EC:5.1.1.1] D YP_3627 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D YP_2405 racX; putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10] D YP_3492 glsA2; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YP_1682 glsA1; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YP_3139 murI; putative glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D YP_3631 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D YP_2128 dgoA2; putative mandelate racemase / muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D YP_1548 Acd; putative deaminase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D YP_3202 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D YP_2861 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D YP_1250 smtA3; putative ABC transport protein K23120 cntL; histidine 2-aminobutanoyltransferase [EC:2.5.1.152 2.5.1.-] D YP_1249 hypothetical protein K23122 cntM; staphylopine/pseudopaline/yersinopine synthase [EC:1.5.1.52 1.5.1.-] D YP_1948 dadA1; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:ypm00480] D YP_2504 putative lactam utilization protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9] D YP_2503 dUR1; Allophanate hydrolase subunit 2 K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9] D YP_0385 gshA; gamma-glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D YP_3507 gshB; glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3] D YP_0643 pepA; cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D YP_2566 pepB; peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D YP_1179 pepN; putative aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D YP_0703 pepD1; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D YP_2153 gst2; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D YP_1278 gst1; putative glutathione S-transferase-family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D YP_3340 gor; glutathione oxidoreductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D YP_1771 icdA; isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D YP_1430 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D YP_1909 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D YP_2211 btuE; putative vitamin B12 transport protein K00432 gpx; glutathione peroxidase [EC:1.11.1.9] D YP_3132 aHP1; putative peroxiredoxin/glutaredoxin family protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27] D YP_3481 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D YP_0274 speE; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation [PATH:ypm00511] D YP_1785 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23] C 00540 Lipopolysaccharide biosynthesis [PATH:ypm00540] D YP_2794 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D YP_3623 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D YP_2796 lpxD; UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D YP_0850 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D YP_2793 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D YP_1197 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D YP_3832 gutQ1; putative isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D YP_1869 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D YP_3833 putative proteins of HAD superfamily, CMP-Neu5Ac homologs K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D YP_1193 kdsB; putative 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D YP_0056 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D YP_1906 msbB; lipid A biosynthesis acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D YP_1313 pgpB4; putative membrane protein K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D YP_2163 putative membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D YP_3372 putative membrane protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D YP_1485 crcA; putative exported protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D YP_2205 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D YP_3915 ddg; putative membrane protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D YP_0689 lpcA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D YP_2969 rfaE; ADP-heptose synthase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D YP_2775 hisB2; Histidinol phosphatase and related phosphatases K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D YP_0059 rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D YP_0057 rfaC; lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D YP_0058 rfaF; ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D YP_3765 rfaQ; putative lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] C 00542 O-Antigen repeat unit biosynthesis [PATH:ypm00542] D YP_3179 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ypm00541] D YP_1428 galU1; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_1429 galF; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D YP_1020 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D YP_1973 ugd; putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D YP_3184 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D YP_3183 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D YP_3186 rffA; putative lipopolysaccharide biosynthesis protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] D YP_3185 rffC; putative lipopolysaccharide biosynthesis protein K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210] D YP_0815 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D YP_0816 wcaG1; putative CDP-D-glucose-4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D YP_0817 ddhC; putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1] D YP_0814 ddhD; cdp-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1] D YP_0818 prt; paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342] D YP_2060 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D YP_2298 manB2; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YP_0829 manB1; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D YP_0826 wcaG2; putative nucleotide di-P-sugar epimerase or dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D YP_4026 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D YP_3181 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D YP_3182 rffD; putative UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] C 00550 Peptidoglycan biosynthesis [PATH:ypm00550] D YP_3824 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D YP_3288 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D YP_3628 murC; UDP-N-acetyl-muramate:alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D YP_3631 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D YP_3634 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D YP_3627 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D YP_3633 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D YP_2801 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D YP_2964 bacA; putative bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D YP_1268 pgpB3; Membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D YP_3632 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D YP_3629 murG; UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapep tide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D YP_3806 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D YP_0146 mrcA1; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D YP_0292 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D YP_1142 mrcA2; putative penicillin-binding protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D YP_1109 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D YP_3635 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D YP_1272 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YP_1112 dacA; putative penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YP_0577 dacB; penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] C 00552 Teichoic acid biosynthesis [PATH:ypm00552] D YP_2964 bacA; putative bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D YP_1268 pgpB3; Membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D YP_3179 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:ypm00543] D YP_3179 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D YP_3190 wecG; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D YP_3188 wecF1; 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D YP_1697 Glycosyltransferase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D YP_1698 hmsS; hemin storage system, HmsS protein K11937 pgaD; biofilm PGA synthesis protein PgaD D YP_0070 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:ypm00730] D YP_3102 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D YP_2725 thiD; putative phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D YP_3104 thiF; thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D YP_1941 nifS; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YP_2558 nifS_2; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YP_0758 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D YP_3107 thiH; thiamine biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D YP_0754 dxs; 1-deoxy-D-xylulose 5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D YP_3106 thiG; thiamine biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10] D YP_3103 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D YP_0751 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D YP_0520 putative GTPases K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D YP_2083 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D YP_2240 cotS; putative choline kinase involved in LPS biosynthesis K07251 thiK; thiamine kinase [EC:2.7.1.89] D YP_0812 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:ypm00740] D YP_2020 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D YP_0748 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D YP_3205 putative haloacid dehalogenase-like hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104] D YP_2973 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D YP_0749 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D YP_2177 ribE; riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9] D YP_3706 ribF; riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D YP_1778 appA; putative histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2] D YP_1623 hpaC; 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36] D YP_3280 fadI; NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41] D YP_3924 ssuE; putative NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38] D YP_2979 mutT7; putative MutT-family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D YP_1769 mutT3; NTP pyrophosphohydrolases including oxidative damage repair enzymes K12152 nudJ; phosphatase NudJ [EC:3.6.1.-] D YP_2391 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:ypm00750] D YP_2156 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D YP_2154 pdxY; pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D YP_3518 epd; D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72] D YP_2400 pdxB; putative D-isomer specific 2-hydroxyacid dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290] D YP_1204 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D YP_3686 pdxA; pyridoxal phosphate biosynthetic protein K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D YP_2525 pdxJ; pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D YP_3721 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:ypm00760] D YP_2514 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D YP_1029 nadA; quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D YP_0260 nadC; quinolinate phosphoribosyltransferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D YP_1180 pncB; putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D YP_0988 xapA; xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D YP_3742 deoD; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1] D YP_3738 nadR; transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D YP_0329 surE; stationary-phase survival protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D YP_1106 nadD; putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D YP_0308 mazG; putative pyrophosphatase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D YP_3099 nPY1; NTP pyrophosphohydrolase containing a Zn-finger K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D YP_2544 nadE; putative glutamine-dependent NAD K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D YP_0378 cinA; Uncharacterized protein (competence- and mitomycin-induced) K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D YP_1960 pncA; putative pyrazinamidase/nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D YP_1760 cobB; putative Sir2 family protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D YP_1050 putative kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D YP_3134 sthA; soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1] D YP_2088 pntA; NAD(P) transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D YP_2087 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D YP_1301 gabD1; putative aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:ypm00770] D YP_3646 ilvI; acetolactate synthase isozyme III large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_3147 ilvG; acetolactate synthase isozyme II large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_2079 ilvB2; putative acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D YP_3647 ilvH; acetolactate synthase isozyme III small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YP_2080 ilvN; putative acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D YP_3148 ilvM; acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6] D YP_3158 ilvC; ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D YP_3150 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D YP_0284 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D YP_0760 apbA; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D YP_0283 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D YP_3290 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D YP_0049 dfp; DNA/pantothenate metabolism flavoprotein K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D YP_0308 mazG; putative pyrophosphatase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D YP_0054 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D YP_0254 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D YP_2526 acpS; holo-[acyl-carrier protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D YP_0738 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14] D YP_3149 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YP_0282 panD; aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:ypm00780] D YP_1007 bioC; biotin synthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197] D YP_1347 fabF3; putative beta-ketoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YP_2406 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YP_2253 fabF4; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D YP_2255 fabG10; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YP_1348 fabG6; putative beta-ketoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YP_2795 fabZ2; (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YP_1346 fabZ1; putative myristoyl-acyl carrier dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YP_0130 bioH; putative biotin biosynthesis protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85] D YP_1008 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D YP_1010 bioA; 7,8-diaminopelargonic acid synthetase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D YP_2065 bioD2; putative dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D YP_1006 bioD1; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D YP_1009 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D YP_3289 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D YP_2863 bisC; putative biotin sulfoxide reductas2 K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] C 00785 Lipoic acid metabolism [PATH:ypm00785] D YP_1114 lipB; lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D YP_1115 lipA; lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D YP_2200 lplA; putative lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0265 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D YP_0266 aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D YP_1043 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D YP_1042 sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D YP_3602 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2] D YP_3604 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D YP_3603 gcsH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:ypm00790] D YP_1395 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D YP_2083 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D YP_1897 nudB; putative dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67] D YP_2963 folB; Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D YP_0285 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D YP_0582 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D YP_3693 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D YP_2395 folC; putative FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D YP_2020 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D YP_0171 pabA; p-aminobenzoate synthetase, component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D YP_1620 pabB; para-aminobenzoate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D YP_2251 pabC; 4-amino-4-deoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D YP_0313 sulfite reductase, alpha subunit K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D YP_0312 nrdG1; Organic radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D YP_0781 putative ATPase (PP-loop superfamily), confers aluminum resistance K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D YP_2817 Enzyme related to GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D YP_1000 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D YP_0999 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D YP_0997 moaE; molybdopterin [mpt] converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D YP_3716 mogA; molybdopterin biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D YP_1385 moeA; molybdopterin biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D YP_0014 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:ypm00670] D YP_3693 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D YP_0855 folD; putative FolD bifunctional protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D YP_2548 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D YP_2697 purN; putative phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D YP_3091 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D YP_0239 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D YP_3604 gcvT; aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D YP_3084 metH; 5-Methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D YP_2875 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D YP_1970 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D YP_0119 metF1; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D YP_0445 metF2; putative methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D YP_3610 putative 5-formyltetrahydrofolatecyclo-ligase-family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:ypm00860] D YP_2609 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YP_1864 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D YP_0296 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D YP_3277 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D YP_3197 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D YP_3196 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D YP_3097 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D YP_2655 hemF; coproporphyrinogen III oxidase, aerobic HemF K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D YP_0022 hemN1; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D YP_3286 hemG; protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D YP_0813 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D YP_3195 hemX; uroporphyrinogen III methylase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D YP_0160 cysG1; siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D YP_0763 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D YP_pMT076 putative porphyrin biosynthetic protein K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D YP_2011 btuR; cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D YP_0205 bfr; bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ypm00130] D YP_0466 ubiC; putative chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40] D YP_0467 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D YP_3279 ubiD; putative oxidoreductase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D YP_2391 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D YP_3605 visC; putative monooxygenase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240] D YP_0922 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D YP_3606 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D YP_3268 ubiE; COQ5 methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D YP_1092 ubiF; putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60] D YP_2339 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D YP_2338 menD; menaquinone biosynthesis protein K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9] D YP_2337 mhpC3; putative hydrolases or acyltransferases (alpha/beta hydrolase superfamily) K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20] D YP_2335 menC; putative O-succinylbenzoate-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113] D YP_2334 caiC; putative O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26] D YP_2336 menB; naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36] D YP_2193 paaI1; Uncharacterized protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] D YP_0106 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D YP_1536 wrbA; trp repressor binding protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D YP_1775 putative nucleoside-diphosphate-sugar epimerases K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:ypm00900] D YP_0754 dxs; 1-deoxy-D-xylulose 5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D YP_2802 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D YP_0326 ispD; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D YP_1862 ipk; putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D YP_0327 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D YP_2745 gcpE; putative acetyltransferase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D YP_3702 lytB; LytB protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D YP_1349 pksG; putative hydroxymethylglutaryl-coenzyme A synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D YP_2391 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D YP_0755 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D YP_0570 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D YP_2801 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:ypm00907] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YP_3281 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YP_2418 paaJ; putative 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D YP_3516 tktA3; transketolase 1 K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YP_0372 tktA1; putative N-terminal region of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D YP_0373 tktA2; C-terminal region of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:ypm00523] D YP_3184 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D YP_3183 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:ypm01053] D YP_2339 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2] D YP_1468 ybtD; putative phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D YP_1659 ybtS; putative salicylate synthetase K04781 mbtI; salicylate synthetase [EC:5.4.4.2 4.2.99.21] D YP_3425 entF3; putative siderophore biosysnthesis protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69] D YP_3427 hypothetical protein K12241 pchG; pyochelin biosynthesis protein PchG D YP_1650 ybtE; yersiniabactin siderophore biosynthetic protein K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D YP_1654 irp2; yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase D YP_1652 ybtU; yersiniabactin biosynthetic protein YbtU K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component D YP_1653 irp1; yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase C 01055 Biosynthesis of vancomycin group antibiotics D YP_3183 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:ypm00946] D YP_2934 bglX2; putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YP_1160 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:ypm00332] D YP_0711 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D YP_0712 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:ypm00261] D YP_0322 cysN; ATP-sulfurylase, subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4] D YP_0321 cysD; sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D YP_3081 lysC2; lysine-sensitive aspartokinase III K00928 lysC; aspartate kinase [EC:2.7.2.4] D YP_3723 thrA; bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] D YP_0118 metL; bifunctional aspartokinase/homoserine dehydrogenase II K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] D YP_3311 asd2; aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D YP_2684 dapA2; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D YP_3699 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:ypm00521] D YP_2602 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D YP_2488 pgm; phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D YP_2555 suhB; putative inositol monophosphatase familyprotein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D YP_3184 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D YP_3183 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D YP_2602 glk; glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:ypm00525] D YP_3184 rffH; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D YP_3183 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:ypm00401] D YP_0399 tyrA; T-protein K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12] D YP_1183 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YP_1436 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YP_0477 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D YP_2006 trpE2; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D YP_2005 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D YP_2256 fabD2; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YP_1355 fabD1; putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YP_2255 fabG10; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YP_1348 fabG6; putative beta-ketoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D YP_2254 acpP3; acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:ypm00999] D YP_3512 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D YP_0245 aroE1; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D YP_2934 bglX2; putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21] D YP_1160 bglB; putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites [PATH:ypm00997] D YP_3447 iucD; putative siderophore biosynthesis protein IucD K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59] D YP_1419 alcA; putative siderophore biosynthetic enzyme K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59] D YP_3449 iucB; putative siderophore biosynthesis protein IucB K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] D YP_3448 iucC; putative siderophore biosynthesis protein IucC K03895 iucC; aerobactin synthase [EC:6.3.2.39] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:ypm00362] D YP_3281 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YP_2418 paaJ; putative 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YP_3352 Uncharacterized protein, like 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D YP_3898 putative gamma carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D YP_1846 putative decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D YP_0087 putative proteins, LmbE homologs K16515 galB; 4-oxalomesaconate hydratase [EC:4.2.1.83] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] C 00627 Aminobenzoate degradation [PATH:ypm00627] D YP_1337 acyP; Acylphosphatases K01512 acyP; acylphosphatase [EC:3.6.1.7] D YP_2391 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation [PATH:ypm00364] D YP_3262 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00625 Chloroalkane and chloroalkene degradation [PATH:ypm00625] D YP_1392 adhC; putative alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YP_1976 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ypm00361] D YP_3262 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00623 Toluene degradation [PATH:ypm00623] D YP_3262 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation D YP_3352 Uncharacterized protein, like 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation [PATH:ypm00633] D YP_2165 nemA2; NADH:flavin oxidoreductase / NADH oxidase familyprotein K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D YP_0982 nemA1; NADH:flavin oxidoreductases, Old Yellow Enzyme family K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] C 00642 Ethylbenzene degradation D YP_3281 fadA; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D YP_2418 paaJ; putative 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation C 00791 Atrazine degradation D YP_2468 ureC; urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5] D YP_2467 ureB; urease (urea amidohydrolase) beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5] D YP_2466 ureA; urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:ypm00930] D YP_3282 fadB; fatty acid oxidation complex alpha subunit K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8] D YP_2417 faoA; putative fatty oxidation complex alpha subunit, enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation C 00621 Dioxin degradation D YP_3352 Uncharacterized protein, like 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation [PATH:ypm00626] D YP_1392 adhC; putative alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D YP_1976 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:ypm03020] D YP_3110 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D YP_3109 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D YP_0232 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D YP_0040 rpoZ; DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:ypm03010] D YP_1201 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D YP_2807 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D YP_0213 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D YP_0231 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D YP_0224 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D YP_0542 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D YP_0200 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D YP_0221 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D YP_3817 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D YP_0206 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D YP_0230 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D YP_0199 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D YP_0229 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D YP_0220 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D YP_0590 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D YP_0391 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D YP_0216 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D YP_0544 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D YP_0211 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D YP_3708 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D YP_2960 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D YP_3113 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D YP_0210 rplB; 50S ribosomal protein l2 K02886 RP-L2; large subunit ribosomal protein L2 D YP_0207 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D YP_0208 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D YP_0219 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D YP_0222 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D YP_3111 rplL; Ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D YP_0545 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D YP_3112 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D YP_3114 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D YP_3818 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D YP_0217 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D YP_0226 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D YP_0214 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D YP_0233 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D YP_0223 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D YP_0394 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D YP_2218 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D YP_0571 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D YP_0212 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D YP_0209 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D YP_0218 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D YP_1324 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D YP_0572 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D YP_0051 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D YP_0215 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D YP_0225 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D YP_0112 rpmE1; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D YP_0797 rpmE2; putative ribosomal protein K02909 RP-L31; large subunit ribosomal protein L31 D YP_2259 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D YP_0052 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D YP_4007 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D YP_2219 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D YP_0228 rpmJ1; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D YP_0796 rpmJ2; putative ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D YP_r1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r4 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r7 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r12 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r16 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r19 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r22 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r2 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r5 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r8 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r11 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r15 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r18 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r21 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r3 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r6 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r9 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r10 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r14 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r17 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r20 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r13 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:ypm00970] D YP_t14 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t67 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t54 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t3 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t46 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t15 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t63 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t41 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t5 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t6 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t29 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YP_t35 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YP_t30 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YP_t48 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YP_t61 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YP_t47 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YP_t32 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D YP_t24 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YP_t25 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YP_t27 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YP_t1 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YP_t49 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YP_t60 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YP_57 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YP_t33 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YP_t8 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YP_t72 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YP_t64 tRNA-His K14226 tRNA-His; tRNA His D YP_t13 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YP_t55 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YP_t2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YP_t68 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YP_t9 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t23 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t65 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t73 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t31 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t20 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t42 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t21 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t34 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t19 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t22 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t26 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t52 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t11 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t50 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t51 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t7 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D YP_t71 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D YP_t66 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YP_t69 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YP_t16 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YP_t4 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t18 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t37 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t36 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t28 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t53 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YP_56 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YP_59 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YP_t17 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YP_t62 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D YP_58 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D YP_t38 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D YP_t43 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t44 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t45 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t39 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t40 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t70 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D YP_2609 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YP_1084 glnS2; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D YP_0381 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D YP_1896 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D YP_1181 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D YP_3982 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D YP_3981 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D YP_2221 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D YP_1214 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D YP_3966 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D YP_0852 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D YP_1411 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D YP_0239 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D YP_0641 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D YP_1103 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D YP_3705 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D YP_3584 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D YP_1889 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D YP_2781 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D YP_2744 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D YP_2216 pheM; phenylalanyl-tRNA synthetase operon leader peptide K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D YP_2215 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D YP_2155 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D YP_0159 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:ypm03060] D YP_0227 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY D YP_3116 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE D YP_0584 secG; protein-export membrane protein K03075 secG; preprotein translocase subunit SecG D YP_0742 secD1; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D YP_0743 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D YP_0741 yajC; putative membrane protein K03210 yajC; preprotein translocase subunit YajC D YP_4009 yidC; putative membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D YP_3620 secA; preprotein translocase SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D YP_0067 secB; protein-export protein K03071 secB; preprotein translocase subunit SecB D YP_3621 putative exported protein K13301 secM; secretion monitor D YP_0389 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D YP_s2 ffs; Bacterial small signal recognition particle RNA. similar to Escherichia coli 4.5S RNA, ffs K01983 ffs; SRP RNA D YP_3235 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor D YP_3271 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D YP_3272 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D YP_3273 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D YP_1117 tatE; sec-independent protein translocase protein K03425 tatE; sec-independent protein translocase protein TatE D YP_2521 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D YP_3704 fkpB; FKBP-type peptidyl-prolyl cis-trans isomerase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:ypm04122] D YP_1941 nifS; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YP_2558 nifS_2; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YP_0942 sseA; putative sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D YP_3227 sirA2; putative redox protein, regulator of disulfide bond formation K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D YP_0198 dsrH; sulfur transfer complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B D YP_0197 dsrF; Uncharacterized protein involved in the oxidation of intracellular sulfur K07236 tusC; tRNA 2-thiouridine synthesizing protein C D YP_0196 dsrE1; sulfur transfer complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D YP_1338 dsrC; putative sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D YP_1768 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D YP_0997 moaE; molybdopterin [mpt] converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D YP_1000 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D YP_0998 moaD; molybdopterin [mpt] converting factor, subunit 1 K03636 moaD; sulfur-carrier protein D YP_1384 moeB; molybdopterin biosynthesis protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D YP_0999 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D YP_3716 mogA; molybdopterin biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D YP_0758 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D YP_3105 thiS; Sulfur transfer protein involved in thiamine biosynthesis K03154 thiS; sulfur carrier protein D YP_3104 thiF; thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:ypm03018] D YP_2872 mutT6; NTP pyrophosphohydrolases including oxidative damage repair enzymes K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D YP_2263 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D YP_3176 rhlB; putative DEAD-box helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D YP_0310 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YP_0593 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D YP_0973 srmB1; Superfamily II DNA and RNA helicases K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D YP_0536 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D YP_0595 deaD; inducible ATP-independent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D YP_3215 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D YP_3178 rho; transcription termination factor K03628 rho; transcription termination factor Rho D YP_0080 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YP_3712 dnaK2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YP_0506 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YP_0529 ymr; multiple regulator K03666 hfq; host factor-I protein D YP_2703 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D YP_0286 pcnB; poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:ypm03030] D YP_1611 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YP_2767 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YP_2791 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YP_0807 dnaX; DNA polymerase III subunit Tau (Contains DNA polymerase III subunit Gamma) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YP_2248 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YP_1105 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YP_3753 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D YP_0642 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YP_4004 dnaN; DNA polymerase III, beta subunit protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YP_0475 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D YP_2959 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D YP_0480 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YP_2768 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D YP_2792 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D YP_0018 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YP_2614 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YP_0042 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:ypm03410] D YP_2037 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D YP_2508 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D YP_3489 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D YP_0053 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D YP_1558 alkA; putative glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D YP_3984 tag; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D YP_1968 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D YP_1286 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D YP_0018 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YP_3586 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D YP_2614 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YP_0042 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:ypm03420] D YP_1754 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D YP_0479 uvrA1; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D YP_1003 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D YP_1527 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C D YP_3206 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D YP_0018 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YP_2614 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YP_0042 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:ypm03430] D YP_0333 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D YP_0527 mutL1; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D YP_2869 mutH; DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D YP_3206 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D YP_1446 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D YP_2738 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D YP_0756 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D YP_3586 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D YP_0480 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YP_2791 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YP_4004 dnaN; DNA polymerase III, beta subunit protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YP_0807 dnaX; DNA polymerase III subunit Tau (Contains DNA polymerase III subunit Gamma) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YP_1105 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YP_2248 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YP_2767 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YP_1611 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YP_0642 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YP_3753 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D YP_2614 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YP_0042 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YP_0156 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YP_1932 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:ypm03440] D YP_3586 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D YP_0480 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YP_4003 recF; DNA metabolism protein K03629 recF; DNA replication and repair protein RecF D YP_2524 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) D YP_0809 recR; recombination protein RecR K06187 recR; recombination protein RecR D YP_0379 recA; RecA protein K03553 recA; recombination protein RecA D YP_0018 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YP_1900 ruvA; Holliday junction helicase subunit B K03550 ruvA; holliday junction DNA helicase RuvA D YP_1901 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D YP_1899 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D YP_0037 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D YP_2883 recB; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D YP_2881 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D YP_2884 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D YP_2791 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YP_4004 dnaN; DNA polymerase III, beta subunit protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YP_0807 dnaX; DNA polymerase III subunit Tau (Contains DNA polymerase III subunit Gamma) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YP_1105 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YP_2248 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YP_2767 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YP_1611 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YP_0642 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YP_3753 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D YP_0111 priA; primosomal protein n' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D YP_0543 priB; primosomal replication protein n K02686 priB; primosomal replication protein N D YP_0804 priC; primosomal replication protein n'' K04067 priC; primosomal replication protein N'' C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 [PATH:ypm03250] D YP_0169 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:ypm02010] D YP_2639 cysP; thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D YP_0081 sbp; exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D YP_2638 cysT; sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D YP_2637 cysW; sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D YP_2636 cysA; sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D YP_0181 tauA1; putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein D YP_0183 tauC1; putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein D YP_0182 tauB1; putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D YP_3921 ssuC; putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein D YP_3920 ssuB; putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D YP_0082 modA1; ABC-type molybdate transport system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein D YP_1015 modA2; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein D YP_1014 modB; molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein D YP_1013 modC; molybdenum transport ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D YP_1018 modF; putative molybdenum transport ATP-binding protein modF K05776 modF; molybdate transport system ATP-binding protein D YP_2584 sfuA; iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein D YP_2672 tbpA2; putative solute-binding periplasmic protein of ABC transporter K02012 afuA; iron(III) transport system substrate-binding protein D YP_2585 sfuB; iron(III)-transport system permease K02011 afuB; iron(III) transport system permease protein D YP_2586 yfuC; iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D YP_2670 putative ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D YP_3657 tbpA3; thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein D YP_3658 thiP; putative transport K02063 thiP; thiamine transport system permease protein D YP_3659 thiQ; thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D YP_1262 potF; putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein D YP_1259 potI; putrescine transport system permease protein K11074 potI; putrescine transport system permease protein D YP_1260 potH; putrescine transport system permease protein K11075 potH; putrescine transport system permease protein D YP_1261 potG; putrescine transport ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D YP_2447 proX; glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D YP_2448 proW3; glycine betaine/L-proline transport system permease K02001 proW; glycine betaine/proline transport system permease protein D YP_2449 proV2; glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D YP_0940 proW2; putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein D YP_0938 proW1; putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein D YP_0939 proV1; putative ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D YP_3076 malE1; maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein D YP_3077 malF6; inner membrane permease of maltose ABC transporter K10109 malF; maltose/maltodextrin transport system permease protein D YP_3078 malG6; maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein D YP_3074 malK2; maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_2299 mtlK; putative mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_3554 putative transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_1496 ABC-type sugar transport systems, ATPase components K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_1497 malK1; putative binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_2927 putative transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_3553 malE2; putative sugar-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D YP_3552 malF7; putative maltodextrin transport permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D YP_3551 malG7; putative maltodextrin permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D YP_1744 togB; putative sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein D YP_1747 togM; putative ABC sugar transporter (permease) K10193 togM; oligogalacturonide transport system permease protein D YP_1746 malG3; putative sugar ABC transporter (permease) K10194 togN; oligogalacturonide transport system permease protein D YP_1745 togA; putative sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein D YP_3827 putative exported protein K07323 mlaC; phospholipid transport system substrate-binding protein D YP_3828 putative membrane protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D YP_3829 putative membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D YP_3826 putative anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein D YP_3830 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D YP_2316 rbsB7; sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein D YP_3325 rbsB9; sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein D YP_3482 rbsB10; putative sugar ABC transporter periplasmicbinding protein K10439 rbsB; ribose transport system substrate-binding protein D YP_2314 rbsC1; putative sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein D YP_3326 rbsC2; sugar transport system permease protein K10440 rbsC; ribose transport system permease protein D YP_3484 araH13; putative sugar transport system permeaseprotein K10440 rbsC; ribose transport system permease protein D YP_2315 rbsA2; putative sugar transport system, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YP_3327 rbsA3; sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YP_3483 mglA8; galactoside transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YP_0007 rbsD1; ribose permease K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D YP_2051 araF; L-arabinose-binding periplasmic protein precursor K10537 araF; L-arabinose transport system substrate-binding protein D YP_2053 araH9; L-arabinose transport system permease protein K10538 araH; L-arabinose transport system permease protein D YP_2052 araG; L-arabinose transport ATP-binding protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D YP_3140 rbsB8; putative periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein D YP_3143 araH11; putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein D YP_3142 araH10; putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein D YP_3141 mglA6; putative sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D YP_1397 mglB; galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D YP_1399 mglC; galactoside permease K10541 mglC; methyl-galactoside transport system permease protein D YP_1398 mglA4; galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D YP_3399 xylF; sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein D YP_3397 araH12; sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein D YP_3398 mglA7; sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D YP_0368 rbsB2; putative sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein D YP_0371 araH3; putative sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein D YP_0370 mglA2; putative sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein D YP_3557 rbsB11; sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein D YP_3556 rbsC3; sugar transport system permease K17206 xltB; putative xylitol transport system permease protein D YP_3555 rbsA4; sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein D YP_1134 rbsB3; putative sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein D YP_1132 araH4; sugar transport system permease protein K17209 iatP; inositol transport system permease protein D YP_1133 rbsA1; ATP-binding component of D-ribose high-affinity transport system K17210 iatA; inositol transport system ATP-binding protein D YP_3253 ugpB5; glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D YP_3254 ugpA; sn-glycerol-3-phosphate transport system, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D YP_3255 ugpE; sn-glycerol-3-phosphate transport system, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D YP_3256 ugpC; sn-glycerol-3-phosphate transport, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D YP_0729 pstS1; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D YP_4024 pstS2; putative phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein D YP_2702 pstC1; putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein D YP_4023 pstC2; putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein D YP_2701 pstA1; putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein D YP_4022 pstA2; putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein D YP_2700 pstB1; putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D YP_4021 pstB2; putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D YP_0953 phnD; putative substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein D YP_0951 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein D YP_0952 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein D YP_0954 phnC; ATP-binding component of phosphonate transport K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D YP_2388 hisM; histidine transport system permease protein HisM K10015 hisM; histidine transport system permease protein D YP_2389 hisQ; histidine transport system permease protein HisQ K10016 hisQ; histidine transport system permease protein D YP_2387 hisP; histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D YP_2390 hisJ; histidine-binding periplasmic protein of high-affinity histidine transport system K10014 hisJ; histidine transport system substrate-binding protein D YP_2327 glnH2; putative glutamine-binding periplasmic protein K10036 glnH; glutamine transport system substrate-binding protein D YP_2328 glnP; putative glutamine transport system permease K10037 glnP; glutamine transport system permease protein D YP_2329 glnQ3; putative glutamine transport ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D YP_1256 artJ; arginine 3rd transport system periplasmic binding protein K09996 artJ; arginine transport system substrate-binding protein D YP_1245 artI3; arginine-binding periplasmic protein 1 precursor K09997 artI; arginine transport system substrate-binding protein D YP_1247 artM3; arginine transport system permease protein K09998 artM; arginine transport system permease protein D YP_1246 artQ; arginine transport system permease protein K09999 artQ; arginine transport system permease protein D YP_1244 artP; arginine transport ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D YP_1098 glnH1; putative amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein D YP_1100 gltK; putative glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein D YP_1099 gltJ1; putative glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein D YP_1101 gltL; putative glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D YP_1547 fliY; putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein D YP_1546 artM4; putative amino-acid ABC transporter (permease) K10009 tcyB; L-cystine transport system permease protein D YP_1545 glnQ2; putative amino-acid ABC transporter (ATP-binding protein) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D YP_3241 livK2; high-affinity leucine-specificleucine-specific-binding periplasmic protein of high-affinity branched-chain amino acid ABC transporter transport system K01999 livK; branched-chain amino acid transport system substrate-binding protein D YP_3242 livH; high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein D YP_3243 livM3; high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein D YP_3244 livG2; high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D YP_3245 livF3; ATP-binding component of leucine transport K01996 livF; branched-chain amino acid transport system ATP-binding protein D YP_2778 nlpA2; putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D YP_1275 nlpA1; putative exported protein K02073 metQ; D-methionine transport system substrate-binding protein D YP_1273 putative ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein D YP_2777 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein D YP_2776 abc2; ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D YP_1274 abc1; putative ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein D YP_0949 livK1; putative substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein D YP_0948 livM2; putative Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein D YP_0947 livM1; putative Branched-chain amino acid transport system, permease component K11961 urtC; urea transport system permease protein D YP_0946 livG1; putative ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein D YP_0945 livF1; putative ABC transport ATP-binding subunit K11963 urtE; urea transport system ATP-binding protein D YP_1005 livF2; putative amino acid transporter K11963 urtE; urea transport system ATP-binding protein D YP_1979 oppA3; periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein D YP_2126 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D YP_1980 oppB; oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein D YP_1981 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein D YP_1982 oppD; oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D YP_1983 oppF2; oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D YP_3365 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein D YP_3364 dppB4; dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein D YP_3363 dppC4; dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein D YP_3362 dppD3; dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein D YP_3361 dppF; dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein D YP_2144 sapA; peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein D YP_2145 sapB2; peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein D YP_2146 sapC; peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein D YP_2147 sapD; peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein D YP_2148 sapF; peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein D YP_1316 oppA2; putative substrate-binding transport protein K13893 yejA; microcin C transport system substrate-binding protein D YP_1317 dppB2; putative ABC transporter integral membrane subunit K13894 yejB; microcin C transport system permease protein D YP_1318 dppC2; putative ABC transporter integral membrane subunit K13895 yejE; microcin C transport system permease protein D YP_1319 putative ABC transporter ATP-binding subunit K13896 yejF; microcin C transport system ATP-binding protein D YP_3014 fepB; ferric enterobactin (enterochelin) binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D YP_1425 ysuA; putative iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D YP_1424 ysuB; putative iron-siderophore transport system, transmembrane component K23186 fepD; iron-siderophore transport system permease protein D YP_1423 ysuC; putative iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein D YP_1422 ysuD; putative iron-siderophore transport system, ATP-binding component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D YP_0294 fhuD; ferrichrome-binding periplasmic protein precursor K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D YP_0295 fhuB; ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein D YP_0293 fhuC; ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D YP_0300 fecB1; putative priplasmic metal binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D YP_2212 btuC2; vitamin B12 transport permease protein K06073 btuC; vitamin B12 transport system permease protein D YP_2210 btuD; putative vitamin B12 transport ATP-binding protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D YP_1904 znuA; exported high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein D YP_1902 znuB; high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein D YP_1903 znuC; high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D YP_2227 yfeA; periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein D YP_2229 yfeC; chelated iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein D YP_2230 yfeD; chelated iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein D YP_2228 yfeB; ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein D YP_3772 rbsB12; putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein D YP_3770 araH14; putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein D YP_3771 araH15; putative ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein D YP_3769 mglA9; putative ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein D YP_1755 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D YP_1757 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D YP_1756 phnL5; lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D YP_2427 ccmD; putative heme exporter protein D K02196 ccmD; heme exporter protein D D YP_2428 ccmC2; putative heme exporter protein C K02195 ccmC; heme exporter protein C D YP_2429 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B D YP_2430 ccmA3; putative heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D YP_0644 putative membrane protein K07091 lptF; lipopolysaccharide export system permease protein D YP_0645 putative membrane protein K11720 lptG; lipopolysaccharide export system permease protein D YP_3836 putative ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D YP_3237 ftsX; cell division protein K09811 ftsX; cell division transport system permease protein D YP_3236 ftsE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein D YP_1656 ybtP; permease and ATP-binding protein of yersiniabactin-iron ABC transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D YP_3430 mdlB5; ABC-transporter transmembrane protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D YP_1657 ybtQ; inner membrane ABC-transporter YbtQ K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D YP_3431 mdlB6; ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D YP_1198 msbA; putative transport ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D YP_0786 mdlA; putative ABC transporter (ATP-binding protein) K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D YP_0787 mdlB1; putative ATP-binding component of a transport system K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D YP_0100 sunT; putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D YP_1127 mdlB2; putative ABC transport protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D YP_3128 hasD; ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D YP_1221 cydC; transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D YP_1220 cydD; transport ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D YP_1229 putative ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D YP_2625 putative ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) [PATH:ypm02060] D YP_2619 ptsI; PTS sytem, enzyme I component K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D YP_2618 ptsH; PTS system, phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D YP_2620 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YP_2246 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D YP_1085 nagE; pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D YP_3847 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D YP_3979 mtlA; PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D YP_2482 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D YP_2480 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D YP_2481 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D YP_1634 manX1; PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D YP_1635 manY; PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component D YP_1636 manZ; PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component D YP_3533 manX3; Phosphotransferase system, mannose/fructose-specific component IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D YP_3530 manX2; putative PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D YP_3531 putative PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D YP_3532 putative PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D YP_2380 ptsN1; phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D YP_2381 sgaB; Phosphotransferase system component IIB of unknown specificity K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D YP_2382 sgaT; putative membrane protein K03475 ulaA; ascorbate PTS system EIIC component D YP_1294 fruB; PTS system, fructose-specific IIA/fpr component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D YP_1292 fruA; PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D YP_1293 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D YP_2873 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D YP_3841 ptsO; putative phosphocarrier protein K08485 ptsO; phosphocarrier protein NPr D YP_3839 ptsN2; nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:ypm03070] D YP_2978 hasF; ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YP_0414 putative type III secretion apparatus K03221 yscF; type III secretion protein F D YP_pCD28 yscF; putative type III secretion protein YscF K03221 yscF; type III secretion protein F D YP_pCD42 yscO; putative type III secretion protein YscO K04056 yscO; type III secretion protein O D YP_pCD41 yscP; putative type III secretion protein YscP K04057 yscP; type III secretion protein P D YP_pCD47 yscX; putative type III secretion protein YscX K04059 yscX; type III secretion protein X D YP_0410 gspD2; putative type III secretion protein K03219 yscC; type III secretion protein C D YP_pCD31 yscC; putative type III secretion protein YscC K03219 yscC; type III secretion protein C D YP_pCD44 yopN; putative membrane-bound Yop targeting protein YopN K04058 yscW; type III secretion protein W D YP_0417 fliF1; type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J D YP_pCD24 yscJ; putative type III secretion lipoprotein YscJ K03222 yscJ; type III secretion protein J D YP_0425 fliP1; putative type III secretion apparatus protein K03226 yscR; type III secretion protein R D YP_pCD39 yscR; putative Yop secretion membrane protein YscR K03226 yscR; type III secretion protein R D YP_0426 fliQ1; putative type III secretion apparatus protein K03227 yscS; type III secretion protein S D YP_pCD38 yscS; type III secretion protein yscS YscS K03227 yscS; type III secretion protein S D YP_0427 fliR1; putative type III secretion apparatus protein K03228 yscT; type III secretion protein T D YP_pCD37 yscT; putative type III secretion protein YscT K03228 yscT; type III secretion protein T D YP_0428 flhB1; putative type III secretion system component K03229 yscU; type III secretion protein U D YP_pCD36 yscU; putative type III secretion protein YscU K03229 yscU; type III secretion protein U D YP_0420 flhA1; putative type III secretion system component K03230 yscV; type III secretion protein V D YP_pCD49 yscV; putative membrane-bound Yop protein YscV K03230 yscV; type III secretion protein V D YP_0421 fliI1; putative type III secretion system ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D YP_pCD43 yscN; putative Yops secretion ATP synthase YscN K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D YP_0424 fliN1; type III secretion system apparatus protein K03225 yscQ; type III secretion protein Q D YP_pCD40 yscQ; putative type III secretion protein YscQ K03225 yscQ; type III secretion protein Q D YP_pCD22 yscL; putative typee III secretion protein YscL K03223 yscL; type III secretion protein L D YP_2840 gspD3; putative general secretion protein K02453 gspD; general secretion pathway protein D D YP_2851 putative lipoprotein K02465 gspS; general secretion pathway protein S D YP_2839 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D YP_2842 hofF; putative general protein secretion protein K02455 gspF; general secretion pathway protein F D YP_2843 hofG1; general secretion pathway protein G K02456 gspG; general secretion pathway protein G D YP_2844 hofG2; General secretory pathway proteins G and H and related periplasmic/secreted proteins K02457 gspH; general secretion pathway protein H D YP_2845 hofG3; general secretion pathway protein I K02458 gspI; general secretion pathway protein I D YP_2846 hofG4; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D YP_2847 gspK; general secretion pathway protein K K02460 gspK; general secretion pathway protein K D YP_2848 gspL; general secretion pathway protein L K02461 gspL; general secretion pathway protein L D YP_2841 gspE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D YP_2850 pppA1; putative type IV prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D YP_0742 secD1; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D YP_0743 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D YP_3116 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE D YP_0584 secG; protein-export membrane protein K03075 secG; preprotein translocase subunit SecG D YP_0227 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY D YP_0741 yajC; putative membrane protein K03210 yajC; preprotein translocase subunit YajC D YP_4009 yidC; putative membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D YP_3620 secA; preprotein translocase SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D YP_3621 putative exported protein K13301 secM; secretion monitor D YP_3235 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor D YP_0067 secB; protein-export protein K03071 secB; preprotein translocase subunit SecB D YP_0389 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D YP_3271 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D YP_3272 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D YP_3273 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D YP_1117 tatE; sec-independent protein translocase protein K03425 tatE; sec-independent protein translocase protein TatE D YP_1887 fhaC1; putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D YP_3083 hylA; hemolysin K11016 shlA; hemolysin D YP_1206 putative exported protein K12342 yadB_C; adhesin YadB/C D YP_1205 putative exported protein K12342 yadB_C; adhesin YadB/C D YP_pCRY07 virB1; type IV secretory pathway VirB1 component K03194 virB1; type IV secretion system protein VirB1 D YP_pCRY08 virB2; type IV secretory pathway VirB2 component K03197 virB2; type IV secretion system protein VirB2 D YP_pCRY10 virB5; type IV secretion system VirB5 component K03200 virB5; type IV secretion system protein VirB5 D YP_pCRY14 virB9; type IV secretory pathway VirB9 component K03204 virB9; type IV secretion system protein VirB9 D YP_pCRY12 virB6; type IV secretory pathway VirB6 component K03201 virB6; type IV secretion system protein VirB6 D YP_pCRY13 virB8; type IV secretion system VirB8 component K03203 virB8; type IV secretion system protein VirB8 D YP_pCRY15 virB10; type IV secretory pathway VirB10 component K03195 virB10; type IV secretion system protein VirB10 D YP_pCRY09 virB4; type IV secretory pathway VirB4 component K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D YP_pCRY16 virB11; type IV secretory pathway VirB11 component K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D YP_3437 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YP_1363 vgrG1; Phage late control gene D protein (GPD) K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3468 vgrG4; hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YP_2441 vgrG2; Phage late control gene D protein (GPD) K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3935 vgrG6; putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3944 vgrG7; putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3672 vgrG5; hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3069 hcp7; Hemolysin-coregulated protein (uncharacterized) K11903 hcp; type VI secretion system secreted protein Hcp D YP_2759 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YP_1361 hcp3; Hemolysin-coregulated protein (uncharacterized) K11903 hcp; type VI secretion system secreted protein Hcp D YP_3677 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YP_3466 hcp8; Hemolysin-coregulated protein (uncharacterized) K11903 hcp; type VI secretion system secreted protein Hcp D YP_3954 putative lipoprotein K11906 vasD; type VI secretion system protein VasD D YP_1377 hypothetical protein K11906 vasD; type VI secretion system protein VasD D YP_2760 putative exported protein K11906 vasD; type VI secretion system protein VasD D YP_3667 putative lipoprotein K11906 vasD; type VI secretion system protein VasD D YP_2442 icmF2; putative membrane protein K11891 impL; type VI secretion system protein ImpL D YP_3947 icmF4; putative exported protein K11891 impL; type VI secretion system protein ImpL D YP_1371 icmF1; putative membrane protein K11891 impL; type VI secretion system protein ImpL D YP_3664 icmF3; hypothetical protein K11891 impL; type VI secretion system protein ImpL D YP_3952 putative membrane protein K11892 impK; type VI secretion system protein ImpK D YP_1359 putative membrane protein K11892 impK; type VI secretion system protein ImpK D YP_3464 putative membrane protein K11892 impK; type VI secretion system protein ImpK D YP_3665 hypothetical protein K11892 impK; type VI secretion system protein ImpK D YP_1362 clpA2; putative ATPase subunit of ATP-dependent protease K11907 vasG; type VI secretion system protein VasG D YP_2573 clpA3; putative Clp ATPase K11907 vasG; type VI secretion system protein VasG D YP_3951 clpB4; Clp ATPase K11907 vasG; type VI secretion system protein VasG D YP_3673 clpB2; putative Clp ATPase K11907 vasG; type VI secretion system protein VasG D YP_3467 clpB3; Clp ATPase K11907 vasG; type VI secretion system protein VasG B B 09132 Signal transduction C 02020 Two-component system [PATH:ypm02020] D YP_0728 phoR; phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D YP_0727 phoB; phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D YP_2633 ompR2; putative response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D YP_2083 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D YP_0729 pstS1; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D YP_4024 pstS2; putative phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein D YP_1763 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YP_1764 phoP; response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D YP_0138 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D YP_0137 ompR1; transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D YP_0916 ompC1; outer membrane protein C, porin K09475 ompC; outer membrane pore protein C D YP_1182 ompC2; putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F D YP_0073 cpxA; two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D YP_0074 cpxR1; two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR D YP_2893 secD2; putative membrane protein K25864 mzrA; modulator protein MzrA D YP_2093 rstA; two-component regulatory system, response regulator protein K07661 rstA; two-component system, OmpR family, response regulator RstA D YP_0303 gsrA; global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107] D YP_3591 creC; putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D YP_3592 creB; putative response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D YP_2718 baeS8; Signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D YP_2719 ompR3; transcriptional response regulatory protein (sensor BaeS) K07664 baeR; two-component system, OmpR family, response regulator BaeR D YP_2714 acrA8; putative HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system D YP_2715 acrB3; AcrB/AcrD/AcrF family membrane protein K07788 mdtB; multidrug efflux pump D YP_2716 acrB4; AcrB/AcrD/AcrF family membrane protein K07789 mdtC; multidrug efflux pump D YP_2717 yegB; putative membrane protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein D YP_2666 acrD; multidrug efflux protein K18324 acrD; multidrug efflux pump D YP_0575 basS; two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D YP_0576 basR; two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR D YP_2209 wecE; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D YP_1847 baeS4; putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D YP_1848 copR; transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D YP_1793 flhC; flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC D YP_1551 fliC; thermoregulated motility protein K02406 fliC; flagellin D YP_3054 fliA2; putative RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YP_1550 fliA1; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YP_3055 motA2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_1794 motA1; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_2492 kdpD1; two-component regulatory protein sensor kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D YP_2491 kdpE; two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D YP_2495 kdpA; putative potassium-transporting ATPase A chain K01546 kdpA; potassium-transporting ATPase potassium-binding subunit D YP_2494 kdpB; putative potassium-transporting ATPase B chain K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6] D YP_2493 kdpC; putative potassium-transporting ATPase C chain K01548 kdpC; potassium-transporting ATPase KdpC subunit D YP_3809 arcB; aerobic respiration control sensor/response regulatory protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D YP_3725 arcA; aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D YP_4005 dnaA2; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein D YP_1401 sfcA1; NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D YP_1704 narX; nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D YP_2664 narP; nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D YP_0515 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D YP_0514 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D YP_0513 frdC; fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C D YP_0512 frdD; fumarate reductase hydrophobic protein K00247 frdD; succinate dehydrogenase subunit D D YP_3369 uhpC; putative regulatory protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D YP_3370 Signal transduction histidine kinase, glucose-6-phosphate specific K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D YP_3371 uhpA2; response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D YP_1464 uhpA1; putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR D YP_2779 rcsF; putative lipoprotein K06080 rcsF; RcsF protein D YP_0920 rcsC; two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D YP_0919 rcsB; putative two component response regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D YP_0304 barA; two-component regulatory protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D YP_1528 uvrY; response regulator protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D YP_0382 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D YP_1666 baeS3; putative Histidine protein kinase sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D YP_1667 fimZ; putative two-component response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D YP_1724 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_1720 putative membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_1723 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_1725 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_3168 fimC8; putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein D YP_1736 fimC5; putative chaperone protein K07346 fimC; fimbrial chaperone protein D YP_1722 fimC4; putative chaperone protein K07346 fimC; fimbrial chaperone protein D YP_1721 fimD3; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_3167 fimD5; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_1734 fimD4; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_1287 psaC; outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein D YP_pMT083 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein D YP_1663 fimD2; putative fimbrial usher protein K07347 fimD; outer membrane usher protein D YP_3008 putative membrane protein K02279 cpaB; pilus assembly protein CpaB D YP_3006 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D YP_3005 putative type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D YP_3004 putative membrane protein K12510 tadB; tight adherence protein B D YP_3003 putative exported protein K12511 tadC; tight adherence protein C D YP_2809 glnD; [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D YP_2545 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D YP_0024 ntrB; Two component regulatory protein involved in nitrogen assimilation K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D YP_0023 ntrC; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D YP_0025 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YP_0984 baeS2; Signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] D YP_0983 atoC1; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07713 zraR; two-component system, NtrC family, response regulator HydG D YP_0985 hypothetical protein K07803 zraP; zinc resistance-associated protein D YP_3355 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D YP_3837 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D YP_2541 baeS5; two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D YP_2543 atoC2; two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR D YP_1808 cheR; protein glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D YP_0911 tar1; putative methyl-accepting chemotaxis transmembrane protein K03406 mcp; methyl-accepting chemotaxis protein D YP_2330 atoS2; putative chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein D YP_1806 cheD1; methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YP_2855 cheD2; putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YP_3973 tar3; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D YP_1807 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D YP_1774 aer; putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D YP_1797 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D YP_1796 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YP_1810 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D YP_1809 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D YP_0409 baeS1; two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA D YP_0408 citB1; putative two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB D YP_3024 atoC3; sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC D YP_1101 gltL; putative glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D YP_1100 gltK; putative glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein D YP_1099 gltJ1; putative glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein D YP_1098 glnH1; putative amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein D YP_0174 crp; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D YP_3492 glsA2; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YP_1682 glsA1; putative glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D YP_1039 cydA; cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D YP_1038 cydB; cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D YP_2048 sunT-2; putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D YP_2978 hasF; ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YP_3181 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D YP_3182 rffD; putative UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D YP_3757 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] D YP_3032 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM D YP_1596 flgM; negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D YP_3481 speC; ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:ypm02024] D YP_0386 luxS; autoinducer-2 production protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D YP_0529 ymr; multiple regulator K03666 hfq; host factor-I protein D YP_2006 trpE2; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D YP_2005 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D YP_2198 aroH; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YP_0398 aroF; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YP_1026 aroG; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D YP_2541 baeS5; two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D YP_2543 atoC2; two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR D YP_1793 flhC; flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC D YP_2491 kdpE; two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D YP_1464 uhpA1; putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR D YP_3772 rbsB12; putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein D YP_3770 araH14; putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein D YP_3771 araH15; putative ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein D YP_3769 mglA9; putative ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein D YP_3766 xylB3; putative carbohydrate kinase K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189] D YP_3767 deoR4; putative regulatory protein K11531 lsrR; lsr operon transcriptional repressor D YP_3773 fbaB; putative aldolase K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245] D YP_3774 hypothetical protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32] D YP_2340 hypothetical protein K20268 rhiA; rhizosphere induced protein D YP_2710 potD; putative transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D YP_1873 tbpA1; putative ABC transporter periplasmic binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D YP_2708 potC2; putative ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D YP_1874 potC1; putative binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D YP_2709 potB2; putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D YP_1875 potB1; putative binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D YP_2713 putative ABC-transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D YP_3241 livK2; high-affinity leucine-specificleucine-specific-binding periplasmic protein of high-affinity branched-chain amino acid ABC transporter transport system K01999 livK; branched-chain amino acid transport system substrate-binding protein D YP_3242 livH; high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein D YP_3243 livM3; high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein D YP_3244 livG2; high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D YP_3245 livF3; ATP-binding component of leucine transport K01996 livF; branched-chain amino acid transport system ATP-binding protein D YP_2275 ypeI; N-acylhomoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D YP_3455 yspI; N-acylhomoserine lactone synthase YspI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184] D YP_2276 ypeR; quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YP_3454 yspR; quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YP_3357 pelY; periplasmic pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2] D YP_3645 fAA1; putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YP_1917 fadD; long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YP_0174 crp; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D YP_0471 fur1; putative regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D YP_2020 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D YP_0748 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D YP_0602 ibeB; putative outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D YP_1979 oppA3; periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein D YP_2126 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D YP_1980 oppB; oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein D YP_1981 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein D YP_1982 oppD; oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D YP_1983 oppF2; oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D YP_2461 oppA4; putative solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D YP_0635 dppB1; putative transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D YP_2462 dppB3; putative membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D YP_0634 dppC1; putative transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D YP_2463 dppC3; binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D YP_0633 dppD1; putative ATP-binding component of dipeptide transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein D YP_2464 dppD2; putative transport ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D YP_2465 oppF3; putative transport ATPase K02032 ddpF; peptide/nickel transport system ATP-binding protein D YP_0632 oppF1; putative ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D YP_4009 yidC; putative membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D YP_3116 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE D YP_0584 secG; protein-export membrane protein K03075 secG; preprotein translocase subunit SecG D YP_0227 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY D YP_0741 yajC; putative membrane protein K03210 yajC; preprotein translocase subunit YajC D YP_3620 secA; preprotein translocase SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D YP_3235 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor D YP_0067 secB; protein-export protein K03071 secB; preprotein translocase subunit SecB D YP_0389 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:ypm02030] D YP_0911 tar1; putative methyl-accepting chemotaxis transmembrane protein K03406 mcp; methyl-accepting chemotaxis protein D YP_2330 atoS2; putative chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein D YP_1806 cheD1; methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YP_2855 cheD2; putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YP_3973 tar3; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D YP_1807 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D YP_1774 aer; putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D YP_3076 malE1; maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein D YP_2316 rbsB7; sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein D YP_3325 rbsB9; sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein D YP_3482 rbsB10; putative sugar ABC transporter periplasmicbinding protein K10439 rbsB; ribose transport system substrate-binding protein D YP_1397 mglB; galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D YP_3365 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein D YP_1796 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YP_1797 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D YP_1810 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D YP_1811 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D YP_1809 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D YP_1808 cheR; protein glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D YP_3027 fliG2; Flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D YP_1563 fliG1; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D YP_3023 fliM; Flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D YP_1569 fliM1; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D YP_3022 fliN2; flagellar switch protein K02417 fliN; flagellar motor switch protein FliN D YP_1570 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D YP_3055 motA2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_1794 motA1; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_3056 motB2; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YP_1795 motB1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:ypm02040] D YP_3025 fliE2; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D YP_1561 fliE1; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D YP_3026 fliF3; putative flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YP_1562 fliF2; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YP_3027 fliG2; Flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D YP_1563 fliG1; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D YP_3028 fliH2; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D YP_1564 fliH1; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D YP_3029 fliI3; putative flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YP_1565 fliI2; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YP_1566 fliJ; flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D YP_3052 fliK2; putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D YP_1567 fliK1; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D YP_3053 putative flagellar biogenesis protein K02415 fliL; flagellar protein FliL D YP_1568 fliL; flagellar protein FliL K02415 fliL; flagellar protein FliL D YP_3023 fliM; Flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D YP_1569 fliM1; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D YP_3022 fliN2; flagellar switch protein K02417 fliN; flagellar motor switch protein FliN D YP_1570 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D YP_1571 fliO; flagellar biosynthesis protein K02418 fliO; flagellar protein FliO/FliZ D YP_3021 fliP3; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D YP_1572 fliP2; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D YP_3020 fliQ3; Flagellar biosynthesis/type III secretory pathway protein K02420 fliQ; flagellar biosynthesis protein FliQ D YP_1573 fliQ2; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D YP_3019 fliR3; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D YP_1574 fliR2; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D YP_1600 flhE; flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE D YP_1601 flhA2; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D YP_3018 flhB3; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D YP_1602 flhB2; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D YP_3033 lfgA; putative flagellar protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D YP_1595 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D YP_3034 flgB2; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D YP_1594 flgB1; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D YP_3035 flgC2; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D YP_1593 flgC1; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D YP_3036 flgD2; basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D YP_1592 flgD1; basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D YP_3037 flgE2; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D YP_1591 flgE1; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D YP_3038 flgF2; putative flagellar rod protein K02391 flgF; flagellar basal-body rod protein FlgF D YP_1590 flgF1; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D YP_3039 flgG2; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D YP_1589 flgG1; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D YP_3040 flgH2; putative flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D YP_1588 flgH1; basal-body outer-membrane L (lipopolysaccharide layer) ring protein K02393 flgH; flagellar L-ring protein FlgH D YP_3041 flgI2; putative flagella basal body protein K02394 flgI; flagellar P-ring protein FlgI D YP_1587 flgI1; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI D YP_3042 flgJ2; flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D YP_1586 flgJ1; flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D YP_3043 flgK2; putative flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1 D YP_1585 flgK1; flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1 D YP_1584 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D YP_1551 fliC; thermoregulated motility protein K02406 fliC; flagellin D YP_3049 fliD2; putative flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2 D YP_1552 fliD1; flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D YP_3050 fliS2; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D YP_1553 fliS1; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D YP_1554 fliT; repressor of class 3a and 3b operons (RflA activity) K02423 fliT; flagellar protein FliT D YP_3055 motA2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_1794 motA1; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_3056 motB2; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YP_1795 motB1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YP_3032 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM D YP_1596 flgM; negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM D YP_3031 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN D YP_1597 flgN1; flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN D YP_1547 fliY; putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein D YP_1549 fliZ; putative alternative sigma factor regulatory protein K02425 fliZ; regulator of sigma S factor FliZ D YP_2958 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D YP_1793 flhC; flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC D YP_3837 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D YP_3024 atoC3; sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC D YP_3054 fliA2; putative RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YP_1550 fliA1; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D YP_0310 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D YP_3084 metH; 5-Methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection [PATH:ypm05135] D YP_3306 putative invasin K13735 yeeJ; adhesin/invasin D YP_pCD13 ypkA; putative targeted effector protein kinase YpkA K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1] D YP_pCD67 yopT; putative cytotoxic effector protein YopT K08599 yopT; YopT peptidase [EC:3.4.22.-] D YP_pCD81 yopE; putative outer membrane virulence protein YopE K23473 yopE; outer membrane virulence protein YopE D YP_pCD17 yopH; putative protein-tyrosine phosphatase Yop effector YopH K23474 yopH; tyrosine-protein phosphatase YopH [EC:3.1.3.48] D YP_pCD54 yopB; putative Yop targeting protein YopB K23475 yopB; transloator D YP_pCD55 yopD; putative Yop negative regulation/targeting component YopD K23476 yopD; transloator D YP_pCD68 yopQ; putative virulence determinant protein YopQ K23477 yopQ; protein YopQ D YP_pCD60 yopM; putative targeted effector protein YopM K23478 yopM; outer membrane protein YopM D YP_pCD14 yopJ; putative targeted effector protein YopJ K08598 yopJ; YopJ protease family C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells D YP_3306 putative invasin K13735 yeeJ; adhesin/invasin B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:ypm01501] D YP_1182 ompC2; putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F D YP_0916 ompC1; outer membrane protein C, porin K09475 ompC; outer membrane pore protein C D YP_0769 ampG; Beta-lactamase induction signal transducer AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D YP_2239 bglX1; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D YP_1979 oppA3; periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein D YP_2126 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D YP_1980 oppB; oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein D YP_1981 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein D YP_1982 oppD; oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D YP_1983 oppF2; oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D YP_0600 acrA2; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_0799 acrA3; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_0798 acrB2; multidrug efflux protein K18138 acrB; multidrug efflux pump D YP_0601 acrB1; multidrug efflux protein K18138 acrB; multidrug efflux pump D YP_3412 acrF; putative integral membrane efflux protein K18138 acrB; multidrug efflux pump D YP_0602 ibeB; putative outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D YP_2978 hasF; ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YP_0146 mrcA1; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D YP_1109 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D YP_3635 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:ypm01502] D YP_3627 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D YP_0476 alr; alanine racemase (biosynthetic) K01775 alr; alanine racemase [EC:5.1.1.1] D YP_3633 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D YP_3632 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D YP_3629 murG; UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapep tide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ypm01503] D YP_1763 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YP_1764 phoP; response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D YP_3372 putative membrane protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D YP_1485 crcA; putative exported protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D YP_2209 wecE; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D YP_2208 pmrF; putative glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53] D YP_2207 wcaG9; putative formyl transferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305] D YP_2206 cDA12; putative xylanase/chitin deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-] D YP_2205 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D YP_2204 rhaT9; putative membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D YP_2203 rhaT8; putative membrane protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF D YP_0575 basS; two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D YP_0576 basR; two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR D YP_2163 putative membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D YP_2144 sapA; peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein D YP_2145 sapB2; peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein D YP_2146 sapC; peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein D YP_2147 sapD; peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein D YP_2148 sapF; peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein D YP_3335 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40] D YP_2782 cutF; putative copper homeostasis lipoprotein K06079 cutF; copper homeostasis protein (lipoprotein) D YP_0073 cpxA; two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D YP_0074 cpxR1; two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR D YP_2827 amiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YP_0526 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YP_0303 gsrA; global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107] D YP_0017 dsbA; secreted thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D YP_0169 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D YP_0600 acrA2; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_0799 acrA3; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_0798 acrB2; multidrug efflux protein K18138 acrB; multidrug efflux pump D YP_0601 acrB1; multidrug efflux protein K18138 acrB; multidrug efflux pump D YP_3412 acrF; putative integral membrane efflux protein K18138 acrB; multidrug efflux pump D YP_2978 hasF; ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YP_2794 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:ypm01000] C 01001 Protein kinases [BR:ypm01001] D YP_1474 rIO1; putative serine/threonine protein kinases K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D YP_pCD13 ypkA; putative targeted effector protein kinase YpkA K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1] D YP_0728 phoR; phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D YP_1763 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YP_0138 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D YP_0073 cpxA; two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D YP_3591 creC; putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D YP_2718 baeS8; Signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D YP_0575 basS; two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D YP_1847 baeS4; putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D YP_2492 kdpD1; two-component regulatory protein sensor kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D YP_3809 arcB; aerobic respiration control sensor/response regulatory protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D YP_2622 baeS6; putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D YP_1704 narX; nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D YP_3370 Signal transduction histidine kinase, glucose-6-phosphate specific K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D YP_0920 rcsC; two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D YP_0304 barA; two-component regulatory protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D YP_1666 baeS3; putative Histidine protein kinase sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D YP_3305 putative membrane protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D YP_0024 ntrB; Two component regulatory protein involved in nitrogen assimilation K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D YP_0984 baeS2; Signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] D YP_2541 baeS5; two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D YP_1796 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YP_0409 baeS1; two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA C 01009 Protein phosphatases and associated proteins [BR:ypm01009] D YP_0080 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YP_0811 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG D YP_3740 serB3; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:ypm01002] D YP_3704 fkpB; FKBP-type peptidyl-prolyl cis-trans isomerase K03101 lspA; signal peptidase II [EC:3.4.23.36] D YP_2850 pppA1; putative type IV prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D YP_3009 pppA2; putative membrane protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D YP_pPCP08 pla; plasminogen activator K08566 pla; plasminogen activator [EC:3.4.23.48] D YP_2507 pcp1; putative pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D YP_2736 guaA; putative GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D YP_0100 sunT; putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D YP_1314 spr1; putative lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D YP_2171 spr2; putative exported protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D YP_2201 nlpC; putative lipoprotein K13695 nlpC; probable lipoprotein NlpC D YP_2392 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D YP_3811 gltB; glutamate synthase [NADPH] large chain precursor K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D YP_4025 glmS; glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D YP_1090 asnB; asparagine synthetase B K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D YP_pCD14 yopJ; putative targeted effector protein YopJ K08598 yopJ; YopJ protease family D YP_0759 thiJ1; 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme K03152 thiJ; protein deglycase [EC:3.5.1.124] D YP_pCD67 yopT; putative cytotoxic effector protein YopT K08599 yopT; YopT peptidase [EC:3.4.22.-] D YP_1186 putative exported protein K21470 ycbB; L,D-transpeptidase YcbB D YP_1019 putative membrane protein K07052 K07052; CAAX protease family protein D YP_3456 putative membrane protein K07052 K07052; CAAX protease family protein D YP_1179 pepN; putative aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D YP_3337 opdA; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70] D YP_3335 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40] D YP_3868 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D YP_2882 ptrA; protease III precursor K01407 ptrA; protease III [EC:3.4.24.55] D YP_3354 pqqL; putative insulinase family protease K07263 pqqL; zinc protease [EC:3.4.24.-] D YP_0643 pepA; cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D YP_2566 pepB; peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23] D YP_2675 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D YP_1761 pepT; putative peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D YP_3421 pepD2; putative peptidase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D YP_0703 pepD1; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D YP_0683 argE1; putative amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D YP_1905 nlpD3; putative M23/M37 peptidase-family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D YP_0350 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D YP_2808 ampM; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D YP_3283 pepQ; proline dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D YP_3607 pepP2; proline-specific aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D YP_2097 putative carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D YP_0581 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D YP_1731 htpX1; putative heat shock protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D YP_3515 htpX3; Zn-dependent protease with chaperone function K07387 K07387; metalloprotease [EC:3.4.24.-] D YP_2691 htpX2; putative exported protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-] D YP_2799 putative membrane protein K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D YP_2411 mepA; putative penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D YP_1472 hypothetical protein K09933 mtfA; MtfA peptidase D YP_2106 putative pepeptidase K04775 ydgD; protease YdgD [EC:3.4.21.-] D YP_0303 gsrA; global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107] D YP_3821 degQ; protease K04772 degQ; serine protease DegQ [EC:3.4.21.-] D YP_3823 degS; protease K04691 hhoB; serine protease DegS [EC:3.4.21.-] D YP_1613 ptrB; oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D YP_1272 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YP_1112 dacA; putative penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YP_0961 pbpG; penicillin-binding protein 7 precursor K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D YP_0915 ampH; putative penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D YP_0577 dacB; penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D YP_0774 clpP; ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D YP_0776 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D YP_0876 lonB; putative Lon protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-] D YP_0470 lexA1; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D YP_2521 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D YP_1612 pip; proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D YP_1730 prc; tail-specific protease precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D YP_1962 sppA; protease IV K04773 sppA; protease IV [EC:3.4.21.-] D YP_2013 sohB; peptidase family U7 protein K04774 sohB; serine protease SohB [EC:3.4.21.-] D YP_0123 glpG; putative membrane protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105] D YP_0108 hslV; heat shock protein K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D YP_2721 putative protease K08303 prtC; U32 family peptidase [EC:3.4.-.-] D YP_0603 Collagenase and related proteases K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D YP_0604 putative protease K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D YP_3852 pmbA; Putative modulator of DNA gyrase K03592 pmbA; PmbA protein D YP_3874 tldD; putative modulator of DNA gyrase K03568 tldD; TldD protein D YP_0926 eco; putative ecotin precursor K08276 eco; ecotin D YP_1141 putative membrane protein K06894 yfhM; alpha-2-macroglobulin D YP_0532 hflC1; putative membrane protein K04087 hflC; modulator of FtsH protease HflC D YP_0531 hflK; putative membrane protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:ypm01003] D YP_1831 wcaG7; Nucleoside-diphosphate-sugar epimerases K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80] D YP_3301 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21] D YP_3806 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D YP_1142 mrcA2; putative penicillin-binding protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D YP_0292 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D YP_0146 mrcA1; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D YP_3190 wecG; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180] D YP_3188 wecF1; 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325] D YP_3179 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D YP_1697 Glycosyltransferase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:ypm01005] D YP_2794 lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D YP_2793 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D YP_3623 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D YP_2796 lpxD; UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D YP_0850 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D YP_1197 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D YP_1906 msbB; lipid A biosynthesis acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243] D YP_3915 ddg; putative membrane protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242] D YP_1313 pgpB4; putative membrane protein K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29] D YP_0056 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D YP_2205 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43] D YP_1485 crcA; putative exported protein K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251] D YP_2163 putative membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43] D YP_3372 putative membrane protein K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42] D YP_1869 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D YP_1193 kdsB; putative 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D YP_3833 putative proteins of HAD superfamily, CMP-Neu5Ac homologs K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D YP_3832 gutQ1; putative isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D YP_0057 rfaC; lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23] D YP_0055 kdtX; lipopolysaccharide core biosynthesis glycosyl transferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-] D YP_0058 rfaF; ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D YP_3765 rfaQ; putative lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25] D YP_0689 lpcA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D YP_2775 hisB2; Histidinol phosphatase and related phosphatases K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D YP_2969 rfaE; ADP-heptose synthase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] D YP_0059 rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D YP_0822 wbyJ; putative mannosyltransferase K13000 wbyJ; mannosyltransferase [EC:2.4.1.-] D YP_0824 wbyK; putative mannosyltransferase K13001 wbyK; mannosyltransferase [EC:2.4.1.-] D YP_0828 wbyL; putative glycosyltransferase K13002 wbyL; glycosyltransferase [EC:2.4.1.-] D YP_3189 wecF2; putative 4-alpha-L-fucosyltransferase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27] D YP_3179 rfe; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ypm01011] D YP_3824 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D YP_3288 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D YP_3628 murC; UDP-N-acetyl-muramate:alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D YP_3631 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D YP_3634 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D YP_3627 ddlB; D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D YP_0476 alr; alanine racemase (biosynthetic) K01775 alr; alanine racemase [EC:5.1.1.1] D YP_3139 murI; putative glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D YP_3632 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D YP_3629 murG; UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapep tide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D YP_2964 bacA; putative bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D YP_1268 pgpB3; Membrane-associated phospholipid phosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D YP_1886 mviN; putative membrane protein K03980 murJ; putative peptidoglycan lipid II flippase D YP_0146 mrcA1; penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D YP_0292 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4] D YP_1142 mrcA2; putative penicillin-binding protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D YP_1109 pbpA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D YP_3635 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D YP_1272 dacC; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YP_1112 dacA; putative penicillin-binding protein 5 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D YP_0577 dacB; penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] D YP_0915 ampH; putative penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] D YP_0961 pbpG; penicillin-binding protein 7 precursor K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-] D YP_3806 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D YP_1186 putative exported protein K21470 ycbB; L,D-transpeptidase YcbB D YP_2411 mepA; putative penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D YP_2171 spr2; putative exported protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-] D YP_1314 spr1; putative lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13] D YP_1905 nlpD3; putative M23/M37 peptidase-family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-] D YP_3868 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-] D YP_3731 slt; putative soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D YP_2826 mltA; membrane-bound lytic murein transglycosylase A precursor K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D YP_2583 mltB2; putative membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D YP_1924 mltB1; putative lipoprotein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D YP_3487 mltC; membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D YP_2771 mltD; membrane-bound lytic murein transglycosylase D precursor K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D YP_2226 mltE1; putative membrane-bound lytic mureintransglycosylase K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29] D YP_2535 mltE2; putative membrane protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D YP_2250 putative exported protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D YP_1111 rlpA; rare lipoprotein A precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D YP_2827 amiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YP_0526 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YP_1740 ampD2; putative N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YP_0261 ampD1; putative signaling protein in beta-lactamase regulation K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28] D YP_2181 lpp; major outer membrane lipoprotein K06078 lpp; murein lipoprotein C 01004 Lipid biosynthesis proteins [BR:ypm01004] D YP_2256 fabD2; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YP_1355 fabD1; putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D YP_2257 fabH2; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D YP_1347 fabF3; putative beta-ketoacyl-[acyl-carrier-protein] synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YP_2406 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D YP_2253 fabF4; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D YP_2255 fabG10; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YP_1348 fabG6; putative beta-ketoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D YP_0875 fabA; beta-hydroxydecanoyl thioester dehydrase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D YP_2795 fabZ2; (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YP_1346 fabZ1; putative myristoyl-acyl carrier dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D YP_4011 putative paraquat-inducible protein B K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44] D YP_0844 tesA; putative acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D YP_0790 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D YP_1994 putative acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-] D YP_0780 fcbC1; putative thioesterase K12500 tesC; thioesterase III [EC:3.1.2.-] D YP_1653 irp1; yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase D YP_1654 irp2; yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase D YP_0406 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D YP_3645 fAA1; putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YP_1917 fadD; long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YP_0468 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15] D YP_2258 plsX; fatty acid/phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D YP_2962 putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D YP_2988 plsC2; putative acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:ypm01008] D YP_1468 ybtD; putative phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-] D YP_1653 irp1; yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase D YP_1654 irp2; yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase D YP_1650 ybtE; yersiniabactin siderophore biosynthetic protein K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-] D YP_3425 entF3; putative siderophore biosysnthesis protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69] D YP_1652 ybtU; yersiniabactin biosynthetic protein YbtU K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component D YP_3427 hypothetical protein K12241 pchG; pyochelin biosynthesis protein PchG D YP_1651 ybtT; yersiniabactin biosynthetic protein YbtT K05374 irp4; yersiniabactin synthetase, thioesterase component C 01006 Prenyltransferases [BR:ypm01006] D YP_0755 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D YP_0570 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D YP_2801 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D YP_0528 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D YP_0106 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D YP_0467 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D YP_0763 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:ypm01007] D YP_2609 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YP_1084 glnS2; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D YP_0287 glnS1; putative glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D YP_2155 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D YP_0159 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D YP_0852 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D YP_1889 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D YP_1411 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D YP_3705 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D YP_0641 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D YP_1103 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D YP_3584 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D YP_1896 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D YP_1181 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D YP_2744 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D YP_3982 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D YP_3981 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D YP_1214 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D YP_2781 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D YP_2221 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D YP_0381 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D YP_2216 pheM; phenylalanyl-tRNA synthetase operon leader peptide K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D YP_2215 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D YP_1183 aspC; aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1] D YP_3991 avtA3; alanine-alpha-ketoisovalerate K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66] D YP_2369 aat2; putative aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] D YP_2600 avtA1; putative aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D YP_0477 tyrB; aromatic-amino-acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57] D YP_1436 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D YP_0060 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29] D YP_1008 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D YP_2630 malY; putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D YP_0172 argD; acetylornithine delta-aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D YP_1707 cstC; acetylornithine delta-aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81] D YP_2711 goaG; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D YP_1010 bioA; 7,8-diaminopelargonic acid synthetase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D YP_0296 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D YP_3149 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D YP_1204 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D YP_2209 wecE; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87] D YP_3186 rffA; putative lipopolysaccharide biosynthesis protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:ypm00194] D YP_4027 atpC; ATP synthase epsilon subunit protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D YP_4028 atpD; ATP synthase beta subunit protein K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D YP_4029 atpG; ATP synthase gamma subunit protein K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D YP_4030 atpA; ATP synthase alpha subunit protein K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D YP_4031 atpH; ATP synthase delta subunit protein K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D YP_4032 atpF; ATP synthase subunit B protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b D YP_4033 atpE; ATP synthase subunit C protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c D YP_4034 atpB; ATP synthase subunit B protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a D YP_4035 atpI; ATP synthase protein I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:ypm03000] D YP_0488 rhaR; L-rhamnose operon transcriptional activator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D YP_0487 rhaS; L-rhamnose operon regulatory protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D YP_2483 celD; cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D YP_1655 ybtA; transcriptional regulator YbtA K05372 ybtA; AraC family transcriptional regulator D YP_3727 rob; putative right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D YP_pCD34 virF; putative thermoregulatory protein VirF K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D YP_0072 ada; bifunctional regulatory protein/DNA repair protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D YP_2822 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D YP_3157 ilvY; LysR-family transcriptional regulatory protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D YP_3260 metR; lysR-family transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D YP_3709 nhaR; transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D YP_3133 oxyR; oxidative stress transcriptional regulatory protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D YP_3613 iciA; replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D YP_3643 leuO; LysR-family transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D YP_2017 cysB; cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D YP_2312 lysR14; putativeLlysR-family transcriptional regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D YP_0088 lysR1; putative transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D YP_3861 lysR22; Transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D YP_3144 lysR20; LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator D YP_1270 deoR3; deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D YP_0122 glpR1; glycerol-3-phosphate repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D YP_3527 agaR; DeoR-family regulatory protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D YP_0359 glpR2; putative deoR-family regulatory protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator D YP_3546 lacI; lactose operon repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D YP_3396 purR11; putative AraC-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YP_3443 cytR2; putative transcription repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YP_2067 galR1; putative LacI-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YP_2862 galR2; galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YP_2929 purR10; LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YP_2313 purR7; putative LacI-family transcriptional regulatoryprotein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YP_1471 purR3; Transcriptional regulators K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YP_0110 cytR1; transcriptional repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D YP_3640 fruR; putative fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D YP_3846 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D YP_2173 purR5; purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D YP_3317 gntR1; gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D YP_2348 purR8; putative LacI-family transcriptional regulatory protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator D YP_0628 phnF1; putative gntR-family transcriptional regulatory protein K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D YP_1504 phnF2; GntR-family putative transcriptional regulatory protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D YP_1946 fadR2; fatty acid metabolism regulatory protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D YP_0264 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D YP_1310 uxuR; putative transcriptional regulatory protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D YP_2896 exuR; exu regulon transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D YP_2712 aRO83; putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D YP_0992 betI; TetR-family regulatory protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D YP_0800 acrR2; putative tetR-family transcriptional regulatory protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D YP_0047 ttk; TetR-family regulatory protein K05501 slmA; TetR/AcrR family transcriptional regulator D YP_2164 acrR4; TetR-family transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D YP_3135 acrR5; TetR-family transcriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D YP_0974 acrR3; Transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D YP_0002 asnC; regulatory protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D YP_1218 lrp2; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YP_1781 lrp3; AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YP_0785 lrp1; putative AsnC-family regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D YP_2276 ypeR; quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YP_3454 yspR; quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YP_0125 malT; maltose regulon positive regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D YP_2160 slyA; MarR-family transcriptional regulatory protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D YP_0666 emrR; MarR-family transcriptional regulatory protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB D YP_0839 cueR; putative regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D YP_0234 soxR1; MerR-family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D YP_1081 fur2; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D YP_0471 fur1; putative regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D YP_3085 iclR; Transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D YP_1739 kdgR; IclR-family transcriptional regulatory protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D YP_0174 crp; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D YP_2085 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D YP_2557 putative transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D YP_0535 putative transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D YP_0341 arsR1; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D YP_1908 rpiR4; Transcriptional regulators K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D YP_3289 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D YP_3893 fiS; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D YP_3730 trpR; putative Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D YP_0568 nlp; putative regulator for maltose metabolism K07724 ner; Ner family transcriptional regulator D YP_1143 nlp-2; putative regulator K07724 ner; Ner family transcriptional regulator D YP_3655 oppA5; ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components K11925 sgrR; SgrR family transcriptional regulator D YP_3738 nadR; transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D YP_3579 hipB4; putative transcriptional regulators K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D YP_3341 putative regulatory protein K02647 cdaR; carbohydrate diacid regulator D YP_1017 modE; molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein D YP_3390 hypothetical protein K07726 K07726; putative transcriptional regulator D YP_0116 metJ; transcriptional repressor protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D YP_1542 putA2; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D YP_0771 bolA1; BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D YP_pMT097 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YP_pMT112 parB; putative partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YP_pCD75 sopB; putative plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YP_3278 rfaH; putative regulatory protein K05785 rfaH; transcriptional antiterminator RfaH D YP_pCRY04 nusG; transcription antiterminator K05785 rfaH; transcriptional antiterminator RfaH D YP_0566 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D YP_1088 nagC2; putative N-acetylglucosamine regulatory protein K02565 nagC; N-acetylglucosamine repressor D YP_2064 mlc; putative ROK family transcriptional regulatory protein K15545 mlc; transcriptional regulator of PTS gene D YP_3977 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor D YP_2131 tyrR; transcriptional regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D YP_2685 gcvR; Glycine cleavage system regulatory protein K03567 gcvR; glycine cleavage system transcriptional repressor D YP_2140 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D YP_2137 pspC; phage shock protein C K03973 pspC; phage shock protein C D YP_3767 deoR4; putative regulatory protein K11531 lsrR; lsr operon transcriptional repressor D YP_3849 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D YP_1646 alpA2; putative transcriptional regulator K07733 alpA; prophage regulatory protein D YP_3576 alpA3; putative regulatory protein K07733 alpA; prophage regulatory protein D YP_1064 alpA1; putative transcriptional regulator K07733 alpA; prophage regulatory protein D YP_3506 Putative transcriptional regulator K07735 algH; putative transcriptional regulator D YP_0288 dksA1; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D YP_0747 putative transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains K07738 nrdR; transcriptional repressor NrdR D YP_0710 crl; curlin genes regulatory protein K11926 crl; sigma factor-binding protein Crl D YP_3638 hypothetical protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:ypm03021] D YP_0232 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D YP_3110 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D YP_3109 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D YP_0040 rpoZ; DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D YP_2958 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D YP_0332 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor D YP_2515 rpoE; RNA polymerase sigma E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D YP_3238 rpoH; RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor D YP_3837 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D YP_3054 fliA2; putative RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YP_1550 fliA1; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YP_3662 hepA; RNA polymerase associated helicase K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-] D YP_0586 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D YP_0750 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D YP_3115 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG D YP_3815 sspA; putative stringent starvation protein A K03599 sspA; stringent starvation protein A D YP_3814 sspB; putative stringent starvation protein B K03600 sspB; stringent starvation protein B D YP_2516 rseA; sigma E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA D YP_2517 rseB; sigma E factor regulatory protein K03598 rseB; sigma-E factor negative regulatory protein RseB D YP_2518 rseC; sigma E factor regulatory protein K03803 rseC; sigma-E factor negative regulatory protein RseC D YP_0288 dksA1; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D YP_0578 greA; transcription elongation factor K03624 greA; transcription elongation factor GreA D YP_0136 greB; transcription elongation factor K04760 greB; transcription elongation factor GreB D YP_3178 rho; transcription termination factor K03628 rho; transcription termination factor Rho D YP_2786 hypothetical protein K19000 rof; Rho-binding antiterminator C 03019 Messenger RNA biogenesis [BR:ypm03019] D YP_2263 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D YP_3877 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D YP_2522 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D YP_0536 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D YP_0521 orn; Oligoribonuclease (3'->5' exoribonuclease) K13288 orn; oligoribonuclease [EC:3.1.-.-] D YP_3176 rhlB; putative DEAD-box helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] D YP_0973 srmB1; Superfamily II DNA and RNA helicases K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D YP_0595 deaD; inducible ATP-independent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D YP_3215 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D YP_0310 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YP_0593 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D YP_3178 rho; transcription termination factor K03628 rho; transcription termination factor Rho D YP_0080 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D YP_3712 dnaK2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YP_0506 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YP_0529 ymr; multiple regulator K03666 hfq; host factor-I protein D YP_2703 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D YP_0286 pcnB; poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D YP_2872 mutT6; NTP pyrophosphohydrolases including oxidative damage repair enzymes K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D YP_0382 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D YP_3882 rtn6; putative exported protein K18765 csrD; RNase E specificity factor CsrD D YP_0105 menG; S-adenosylmethionine:2-demethylmenaquinone methyltransferase K02553 rraA; regulator of ribonuclease activity A D YP_0639 hypothetical protein K09893 rraB; regulator of ribonuclease activity B D YP_3840 putative P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ D YP_2109 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent helicase HrpA [EC:5.6.2.6] D YP_0291 hrpB; helicase, ATP-dependent K03579 hrpB; ATP-dependent helicase HrpB [EC:5.6.2.6] D YP_s5 csrB; similar to Escherichia coli regulatory RNA csrB K18515 csrB; small regulatory RNA CsrB D YP_s1 spf; RNA feature: spf Spot 42 RNA K18527 spf; small regulatory RNA Spot 42 C 03041 Spliceosome C 03011 Ribosome [BR:ypm03011] D YP_1201 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D YP_2807 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D YP_0213 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D YP_0231 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D YP_0224 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D YP_0542 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D YP_0200 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D YP_0221 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D YP_3817 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D YP_0206 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D YP_0230 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D YP_0199 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D YP_0229 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D YP_0220 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D YP_0590 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D YP_0391 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D YP_0216 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D YP_0544 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D YP_0211 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D YP_3708 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D YP_2960 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D YP_3113 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D YP_0210 rplB; 50S ribosomal protein l2 K02886 RP-L2; large subunit ribosomal protein L2 D YP_0207 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D YP_0208 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D YP_0219 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D YP_0222 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D YP_0545 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D YP_3112 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D YP_3114 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D YP_3111 rplL; Ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D YP_3818 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D YP_0217 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D YP_0226 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D YP_0214 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D YP_0233 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D YP_0223 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D YP_0394 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D YP_2218 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D YP_0571 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D YP_0212 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D YP_0209 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D YP_0218 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D YP_0572 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D YP_0051 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D YP_0215 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D YP_0225 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D YP_0112 rpmE1; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D YP_0797 rpmE2; putative ribosomal protein K02909 RP-L31; large subunit ribosomal protein L31 D YP_2259 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D YP_0052 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D YP_4007 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D YP_2219 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D YP_0228 rpmJ1; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D YP_0796 rpmJ2; putative ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D YP_1324 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D YP_r3 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r6 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r9 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r10 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r14 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r17 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r20 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r13 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r4 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r7 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r12 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r16 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r19 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r22 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r2 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r5 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r8 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r11 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r15 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r18 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r21 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:ypm03009] D YP_2522 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D YP_1474 rIO1; putative serine/threonine protein kinases K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D YP_0521 orn; Oligoribonuclease (3'->5' exoribonuclease) K13288 orn; oligoribonuclease [EC:3.1.-.-] D YP_2523 era; putative GTP-binding protein K03595 era; GTPase D YP_0574 obg; putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] D YP_0288 dksA1; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D YP_0586 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D YP_0750 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D YP_3115 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG D YP_1322 rsuA1; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D YP_3687 ksgA2; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D YP_0238 sun; tRNA and rRNA cytosine-C5-methylases K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D YP_3754 rsmC2; ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172] D YP_3233 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D YP_3508 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D YP_4036 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D YP_3637 putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D YP_3801 putative tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D YP_3336 smtA9; SAM-dependent methyltransferases K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D YP_1488 rrmA; rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] D YP_0537 spoU; putative methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D YP_0580 ftsJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D YP_2331 putative SAM-dependent methyltransferases K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181] D YP_2908 rsmC1; putative methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174] D YP_1108 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D YP_1336 putative SAM-dependent methyltransferases K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D YP_3339 Protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D YP_1175 putative N6-adenine-specific DNA methylases K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173] D YP_2820 putative SAM-dependent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D YP_2748 putative Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D YP_1257 trmA1; putative RNA methyltransferase K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189] D YP_3682 rluA3; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D YP_2010 rsuA3; 16S rRNA uridine-516 pseudouridylate synthase-related pseudouridylate synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D YP_2262 rluA1; ribosomal large subunit pseudouridine synthaseC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D YP_0654 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D YP_1770 rsuA2; putative pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D YP_0662 yfiF; putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D YP_3752 rimI3; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D YP_1884 rimJ; ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D YP_0392 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM D YP_1208 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D YP_3891 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D YP_2413 hemK2; putative rRNA or tRNA methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] D YP_1762 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] D YP_2263 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12] D YP_3877 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] D YP_3505 putative endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D YP_1617 dbpA; ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] D YP_0595 deaD; inducible ATP-independent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D YP_2512 srmB2; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7] D YP_0520 putative GTPases K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D YP_2741 putative GTP-binding protein K03977 engA; GTPase D YP_0530 hflX; GTP-binding protein K03665 hflX; GTPase D YP_0244 sUA5A; Putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D YP_0039 spoT; guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D YP_0588 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D YP_0585 hypothetical protein K09748 rimP; ribosome maturation factor RimP D YP_0854 hypothetical protein K14761 rlbA; ribosome-associated protein D YP_1107 conserved hypothetical protein (like plant Iojap proteins) K09710 ybeB; ribosome-associated protein D YP_1095 putative metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor D YP_0579 putative RNA-binding protein containing KH domain K07574 yhbY; RNA-binding protein D YP_3976 hypothetical protein K14762 yibL; ribosome-associated protein D YP_3853 hypothetical protein K09889 yjgA; ribosome-associated protein D YP_0652 putative yhbH sigma 54 modulator K05809 raiA; ribosome-associated inhibitor A D YP_1858 putative GTPase K06942 ychF; ribosome-binding ATPase D YP_2260 putative metal-binding K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:ypm03016] D YP_2965 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D YP_2609 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YP_2781 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D YP_3705 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D YP_1103 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D YP_1411 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D YP_1084 glnS2; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D YP_1889 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D YP_3584 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D YP_1896 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D YP_0381 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D YP_1181 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D YP_2221 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D YP_1214 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D YP_0852 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D YP_0641 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D YP_2744 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D YP_2216 pheM; phenylalanyl-tRNA synthetase operon leader peptide K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D YP_2215 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D YP_2155 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D YP_0159 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D YP_0030 dtd; D-Tyr-tRNAtyr deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D YP_2243 hit; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D YP_3490 Putative methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D YP_2780 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D YP_2398 truA; pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D YP_0589 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D YP_0328 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D YP_1941 nifS; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YP_2558 nifS_2; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YP_0244 sUA5A; Putative translation factor (SUA5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D YP_0528 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D YP_4010 thdF; GTP-binding protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D YP_4037 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D YP_1964 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D YP_0554 cysQ; inositol monophosphatase family protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D YP_4008 rnpA; ribonuclease P protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D YP_s7 rnpB; similar to RNA component of Escherichia coli RNase P, involved in tRNA and 4.5S RNA-processing K01978 rnpB; M1 RNA D YP_2168 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-] D YP_0045 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D YP_2034 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D YP_1918 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D YP_0290 ligT; putative 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D YP_3736 uup4; ATPase components of ABC transporters with duplicated ATPase domains K06020 ettA; energy-dependent translational throttle protein EttA D YP_3982 glyQ; glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D YP_3981 glyS; glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D YP_0287 glnS1; putative glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D YP_0836 ebsC; Aminoacyl-tRNA editing domain K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D YP_2534 putative zinc-binding protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D YP_0472 putative TIM-barrel enzymes K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D YP_3892 putative TIM-barrel enzymes K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D YP_0963 putative TIM-barrel enzymes K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-] D YP_1093 miaB; putative tRNA-thiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D YP_1893 smtA6; SAM-dependent methyltransferases K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D YP_1892 smtA5; SAM-dependent methyltransferases K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-] D YP_1191 smtA2; putative methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-] D YP_3137 trmA2; tRNA (uracil-5)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35] D YP_0393 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D YP_0662 yfiF; putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-] D YP_0038 trmH; tRNA (guanosine-2'-O-)-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D YP_2556 lasT; putative SpoU-family rRNA methylase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200] D YP_0071 cspR; putative methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D YP_2513 smtA7; SAM-dependent methyltransferases K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D YP_2813 rluA2; Pseudouridylate synthases, 23S RNA-specific K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26] D YP_3682 rluA3; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D YP_1768 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D YP_2121 mesJ1; putative ATPase of the PP-loop superfamily implicated in cell cycle control K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D YP_3227 sirA2; putative redox protein, regulator of disulfide bond formation K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D YP_0198 dsrH; sulfur transfer complex subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B D YP_0197 dsrF; Uncharacterized protein involved in the oxidation of intracellular sulfur K07236 tusC; tRNA 2-thiouridine synthesizing protein C D YP_0196 dsrE1; sulfur transfer complex subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] D YP_1338 dsrC; putative sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] D YP_2560 iscA3; iron-sulfur cluster assembly protein K13628 iscA; iron-sulfur cluster assembly protein D YP_3595 putative aminomethyltransferase related to GcvT K06980 ygfZ; tRNA-modifying protein YgfZ D YP_2407 dadA2; Glycine/D-amino acid oxidases (deaminating) K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] D YP_0739 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D YP_0781 putative ATPase (PP-loop superfamily), confers aluminum resistance K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D YP_0313 sulfite reductase, alpha subunit K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D YP_0312 nrdG1; Organic radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D YP_2817 Enzyme related to GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D YP_0523 putative iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D YP_0740 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D YP_0758 thiI; thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D YP_2788 mesJ2; putative ATPase of the PP-loop superfamily implicated in cell cycle control K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D YP_2678 putative acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] D YP_1915 Inactive homologs of metal-dependent proteases, putative molecular chaperones K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D YP_2961 gcp; putative glycoprotease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D YP_0525 putative ATPase or kinase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D YP_2825 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D YP_0536 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D YP_0593 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:ypm03012] D YP_2027 sUI1; translation initiation factor SUI1 familyprotein K03113 EIF1; translation initiation factor 1 D YP_0587 infB; protein chain initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D YP_2220 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D YP_0187 uup1; ATPase components of ABC transporters with duplicated ATPase domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D YP_2806 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D YP_3117 tufA; elongation factor Tu K02358 tuf; elongation factor Tu D YP_0202 tufA1; elongation factor Tu K02358 tuf; elongation factor Tu D YP_0201 fusA; elongation factor G K02355 fusA; elongation factor G D YP_1865 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D YP_2804 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D YP_1866 hemK1; putative protoporphyrinogen oxidase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D YP_1859 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D YP_1223 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D YP_0510 efp1; elongation factor P K02356 efp; elongation factor P D YP_1307 efp2; putative elongation factor P K02356 efp; elongation factor P D YP_0517 putative lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D YP_0509 kamA; Lysine 2,3-aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-] D YP_2409 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-] D YP_3585 prfB2; peptide chain release factor RF-2 K02836 prfB; peptide chain release factor 2 D YP_3751 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D YP_0235 hypothetical protein K09890 arfA; alternative ribosome-rescue factor D YP_2783 prfB1; Protein chain release factor B K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:ypm03110] D YP_1225 clpA1; ATP-dependent Clp protease ATP-binding subunit K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D YP_0656 clpB1; Clp ATPase K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D YP_0775 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D YP_0107 hslU; ATP-binding heat shock protein K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D YP_0811 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG D YP_3712 dnaK2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YP_2563 hscA; chaperone protein HscA K04044 hscA; molecular chaperone HscA D YP_2707 dnaK1; putative heat shock protein K04046 yegD; hypothetical chaperone protein D YP_0506 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YP_3711 dnaJ2; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D YP_3683 djlA; DnaJ-like protein K05801 djlA; DnaJ like chaperone protein D YP_2562 hscB; chaperone protein HscB K04082 hscB; molecular chaperone HscB D YP_0140 hslO; heat-shock chaperonin K04083 hslO; molecular chaperone Hsp33 D YP_1049 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D YP_3994 ibpA; heat shock protein K04080 ibpA; molecular chaperone IbpA D YP_3993 ibpB; heat shock protein K04081 ibpB; molecular chaperone IbpB D YP_0141 hslR; heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15 D YP_0505 groES; 10 kDa chaperonin K04078 groES; chaperonin GroES D YP_0303 gsrA; global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107] D YP_0581 ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D YP_4034 atpB; ATP synthase subunit B protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a D YP_3168 fimC8; putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein D YP_1736 fimC5; putative chaperone protein K07346 fimC; fimbrial chaperone protein D YP_1722 fimC4; putative chaperone protein K07346 fimC; fimbrial chaperone protein D YP_0067 secB; protein-export protein K03071 secB; preprotein translocase subunit SecB D YP_0075 cpxP; putative exported protein K06006 cpxP; periplasmic protein CpxP/Spy D YP_0985 hypothetical protein K07803 zraP; zinc resistance-associated protein D YP_2475 putative exported protein K19778 hdeB; acid stress chaperone HdeB D YP_0364 torD1; putative component of anaerobic dehydrogenases K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D YP_2593 torD3; putative component of anaerobic dehydrogenases K23349 dmsD; putative dimethyl sulfoxide reductase chaperone D YP_0169 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D YP_0851 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D YP_0778 ppiD; peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D YP_0194 fkpA; peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] D YP_0551 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8] D YP_3703 slpA2; putative FKBX-type 16KD peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8] D YP_0191 slyD; peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D YP_3172 ppiC; peptidyl-prolyl cis-trans isomerase C K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D YP_3685 surA; survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D YP_3177 trxA2; thioredoxin 1 K03671 TXN; thioredoxin D YP_0661 trxC; thioredoxin 2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8] D YP_0842 putative thioredoxin K05838 ybbN; putative thioredoxin D YP_1265 grxA; glutaredoxin 1 K03674 grxA; glutaredoxin 1 D YP_0066 grxC; glutaredoxin K03676 grxC; glutaredoxin 3 D YP_2169 Glutaredoxin-related proteins K07390 grxD; monothiol glutaredoxin D YP_0017 dsbA; secreted thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15] D YP_1944 dsbB; disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9] D YP_3587 dsbC; thiol:disulfide interchange protein (DsbC) K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D YP_0499 dsbD; thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16] D YP_2424 ccmG; thiol:disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:ypm04131] D YP_2749 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D YP_1957 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D YP_1025 gpmA; phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D YP_2180 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40] D YP_1907 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40] D YP_0811 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:ypm04121] C 03051 Proteasome [BR:ypm03051] D YP_0811 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:ypm03032] D YP_2768 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D YP_3094 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D YP_0777 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D YP_2214 ihfA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha D YP_1200 ihfB; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta D YP_4005 dnaA2; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein D YP_0475 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D YP_2959 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D YP_0480 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YP_2791 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YP_4004 dnaN; DNA polymerase III, beta subunit protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YP_0642 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YP_1105 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YP_2248 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YP_2767 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YP_0807 dnaX; DNA polymerase III subunit Tau (Contains DNA polymerase III subunit Gamma) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YP_3753 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D YP_1611 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YP_2792 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D YP_0018 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YP_2614 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YP_0042 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YP_2062 tus; DNA-binding protein K10748 tus; DNA replication terminus site-binding protein D YP_0156 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YP_1932 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YP_2487 seqA; putative negative regulator of replication initiation K03645 seqA; negative modulator of initiation of replication D YP_2693 dnaA1; ATPase involved in DNA replication initiation K10763 hda; DnaA-homolog protein D YP_0921 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D YP_4002 gyrB2; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D YP_2987 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D YP_2983 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D YP_2016 topA2; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D YP_1965 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:ypm03036] D YP_2522 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D YP_1974 hns; DNA-binding protein HLP-II (HU, BH2, HD, NS) K03746 hns; DNA-binding protein H-NS D YP_3094 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D YP_0777 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D YP_2214 ihfA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha D YP_1200 ihfB; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta D YP_3727 rob; putative right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D YP_4005 dnaA2; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein D YP_3804 gmhA; putative phosphosugar isomerase K12961 diaA; DnaA initiator-associating protein D YP_1335 hypothetical protein K11940 hspQ; heat shock protein HspQ D YP_2325 dps; putative DNA-binding protein K04047 dps; starvation-inducible DNA-binding protein D YP_3893 fiS; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D YP_0529 ymr; multiple regulator K03666 hfq; host factor-I protein D YP_3613 iciA; replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D YP_1218 lrp2; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YP_1781 lrp3; AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YP_0879 putative nucleoid-associated protein K06899 ndpA; nucleoid-associated protein D YP_1188 mukB1; cell division protein K03632 mukB; chromosome partition protein MukB D YP_1189 mukE; condesin subunit E K03804 mukE; chromosome partition protein MukE D YP_1190 mukF; putative killing factor protein K03633 mukF; chromosome partition protein MukF D YP_3625 ftsA2; cell division protein FtsA K03590 ftsA; cell division protein FtsA D YP_0325 Septum formation initiator K05589 ftsB; cell division protein FtsB D YP_3236 ftsE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein D YP_3635 ftsI; penicillin-binding protein 3 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D YP_1217 ftsK; putative cell division protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D YP_3636 ftsL; putative cell division protein K03586 ftsL; cell division protein FtsL D YP_0109 ftsN; cell division protein K03591 ftsN; cell division protein FtsN D YP_3626 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D YP_3630 ftsW2; cell division protein FtsW K03588 ftsW; cell division protein FtsW D YP_3237 ftsX; cell division protein K09811 ftsX; cell division transport system permease protein D YP_3624 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D YP_2615 zipA; putative cell division protein K03528 zipA; cell division protein ZipA D YP_3609 hypothetical protein K09888 zapA; cell division protein ZapA D YP_0097 hypothetical protein K09892 zapB; cell division protein ZapB D YP_1177 hypothetical protein K18657 zapC; cell division protein ZapC D YP_0253 hypothetical protein K18778 zapD; cell division protein ZapD D YP_3819 putative ATPase K06916 zapE; cell division protein ZapE D YP_0550 oapA; Cell envelope opacity-associated protein A K07269 ytfB; cell division protein YtfB D YP_2827 amiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YP_0526 amiB; N-acetylmuramoyl-l-alanine amidase II K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YP_0600 acrA2; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_0799 acrA3; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_1921 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC D YP_1920 minD; septum site-determining protein K03609 minD; septum site-determining protein MinD D YP_1919 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor D YP_1327 sulA; putative cell division inhibitor K13053 sulA; cell division inhibitor SulA D YP_0047 ttk; TetR-family regulatory protein K05501 slmA; TetR/AcrR family transcriptional regulator D YP_2487 seqA; putative negative regulator of replication initiation K03645 seqA; negative modulator of initiation of replication D YP_3881 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D YP_3880 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D YP_3879 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D YP_1110 ftsW1; rod shape-determining protein K05837 rodA; rod shape determining protein RodA D YP_pCRY27 parA; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D YP_pCD74 sopA; putative plasmid partitioning transcription repressor K03496 parA; chromosome partitioning protein D YP_pMT113 parA; putative partitioning protein A K03496 parA; chromosome partitioning protein D YP_pMT097 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YP_pMT112 parB; putative partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YP_pCD75 sopB; putative plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YP_2987 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D YP_2983 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D YP_4037 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D YP_4036 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D YP_3204 xerC3; putative integrase/recombinase K03733 xerC; integrase/recombinase XerC D YP_3588 xerD; integrase/recombinase K04763 xerD; integrase/recombinase XerD D YP_1412 mrp; ATPase K03593 mrp; ATP-binding protein involved in chromosome partitioning D YP_0020 putative GTPases K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:ypm03400] D YP_2084 ada2; Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D YP_2499 phrB; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D YP_2508 ung; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D YP_3489 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D YP_2037 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D YP_3619 mutT8; mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D YP_0048 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D YP_0072 ada; bifunctional regulatory protein/DNA repair protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D YP_1558 alkA; putative glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D YP_3984 tag; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D YP_0053 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D YP_1968 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D YP_1286 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D YP_3096 nfi; endonuclease V (deoxyinosine 3'endoduclease) K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D YP_3586 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D YP_2614 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YP_0042 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D YP_0018 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D YP_0479 uvrA1; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D YP_1003 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D YP_1527 uvrC; excinuclease ABC, subunit C K03703 uvrC; excinuclease ABC subunit C D YP_3206 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D YP_3110 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D YP_3109 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D YP_0232 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D YP_0040 rpoZ; DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D YP_1754 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D YP_0333 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D YP_0527 mutL1; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D YP_2869 mutH; DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D YP_1446 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D YP_2738 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D YP_0756 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D YP_2791 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D YP_4004 dnaN; DNA polymerase III, beta subunit protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D YP_0642 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D YP_1105 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D YP_2248 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D YP_2767 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D YP_0807 dnaX; DNA polymerase III subunit Tau (Contains DNA polymerase III subunit Gamma) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D YP_3753 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] D YP_1611 holE; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D YP_0480 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YP_0156 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YP_1932 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YP_2883 recB; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] D YP_2881 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] D YP_2884 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D YP_0379 recA; RecA protein K03553 recA; recombination protein RecA D YP_1900 ruvA; Holliday junction helicase subunit B K03550 ruvA; holliday junction DNA helicase RuvA D YP_1901 ruvB; Holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D YP_1899 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D YP_0111 priA; primosomal protein n' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D YP_0543 priB; primosomal replication protein n K02686 priB; primosomal replication protein N D YP_0804 priC; primosomal replication protein n'' K04067 priC; primosomal replication protein N'' D YP_0725 sbcC2; ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 D YP_0726 sbcD; exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D YP_3739 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D YP_4003 recF; DNA metabolism protein K03629 recF; DNA replication and repair protein RecF D YP_0037 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D YP_2524 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) D YP_0809 recR; recombination protein RecR K06187 recR; recombination protein RecR D YP_1051 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D YP_0723 rdgC; recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC D YP_2287 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D YP_1323 sSL2; putative DEAD box helicase family protein K19789 radD; DNA repair protein RadD D YP_0170 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D YP_0921 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D YP_4002 gyrB2; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D YP_2016 topA2; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D YP_3094 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha D YP_0777 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D YP_3893 fiS; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D YP_2214 ihfA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha D YP_1200 ihfB; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta D YP_3215 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D YP_1974 hns; DNA-binding protein HLP-II (HU, BH2, HD, NS) K03746 hns; DNA-binding protein H-NS D YP_0702 dinP; DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D YP_0470 lexA1; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D YP_3661 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D YP_2266 dinI; DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I D YP_0380 recX; putative regulatory protein K03565 recX; regulatory protein D YP_3173 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D YP_1331 helD; DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D YP_0932 dinG1; putative ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D YP_1914 dinG2; putative DEAD box family helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D YP_0923 nrdA; ribonucleoside-diphosphate reductase 1 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YP_pMT047 putative ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YP_2451 nrdE; ribonucleoside-diphosphate reductase 2 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D YP_0924 nrdB; ribonucleoside-diphosphate reductase 1 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YP_pMT046 putative ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D YP_2450 nrdF; ribonucleoside-diphosphate reductase 2 beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:ypm03029] D YP_0587 infB; protein chain initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D YP_2220 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D YP_2806 tsf; elongation factor Ts K02357 tsf; elongation factor Ts D YP_3117 tufA; elongation factor Tu K02358 tuf; elongation factor Tu D YP_0202 tufA1; elongation factor Tu K02358 tuf; elongation factor Tu D YP_0201 fusA; elongation factor G K02355 fusA; elongation factor G D YP_2523 era; putative GTP-binding protein K03595 era; GTPase D YP_2155 tyrS; tyrosine tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D YP_1103 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D YP_1896 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D YP_1889 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D YP_0480 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D YP_2798 putative surface antigen K07277 SAM50; outer membrane protein insertion porin family D YP_3712 dnaK2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YP_1049 grpE; heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE D YP_0506 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YP_0505 groES; 10 kDa chaperonin K04078 groES; chaperonin GroES D YP_3711 dnaJ2; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D YP_1941 nifS; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YP_2558 nifS_2; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YP_2562 hscB; chaperone protein HscB K04082 hscB; molecular chaperone HscB D YP_2169 Glutaredoxin-related proteins K07390 grxD; monothiol glutaredoxin D YP_1412 mrp; ATPase K03593 mrp; ATP-binding protein involved in chromosome partitioning D YP_0763 cyoE; protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D YP_4009 yidC; putative membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D YP_0811 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:ypm02000] D YP_1656 ybtP; permease and ATP-binding protein of yersiniabactin-iron ABC transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D YP_3430 mdlB5; ABC-transporter transmembrane protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D YP_1657 ybtQ; inner membrane ABC-transporter YbtQ K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D YP_3431 mdlB6; ATP-binding protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D YP_1198 msbA; putative transport ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D YP_0786 mdlA; putative ABC transporter (ATP-binding protein) K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump D YP_0787 mdlB1; putative ATP-binding component of a transport system K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump D YP_2048 sunT-2; putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D YP_0100 sunT; putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D YP_1127 mdlB2; putative ABC transport protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D YP_1475 mdlB4; putative ABC transporter (ATP-binding protein) K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D YP_3128 hasD; ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D YP_1221 cydC; transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D YP_1220 cydD; transport ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D YP_1229 putative ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D YP_2625 putative ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-] D YP_1174 uup2; ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein D YP_2639 cysP; thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein D YP_0081 sbp; exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein D YP_2638 cysT; sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein D YP_2637 cysW; sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein D YP_2636 cysA; sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3] D YP_0082 modA1; ABC-type molybdate transport system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein D YP_1015 modA2; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein D YP_1014 modB; molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein D YP_1013 modC; molybdenum transport ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D YP_1018 modF; putative molybdenum transport ATP-binding protein modF K05776 modF; molybdate transport system ATP-binding protein D YP_0181 tauA1; putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein D YP_0183 tauC1; putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein D YP_0182 tauB1; putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7] D YP_3921 ssuC; putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein D YP_3920 ssuB; putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D YP_2584 sfuA; iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein D YP_2672 tbpA2; putative solute-binding periplasmic protein of ABC transporter K02012 afuA; iron(III) transport system substrate-binding protein D YP_2585 sfuB; iron(III)-transport system permease K02011 afuB; iron(III) transport system permease protein D YP_2586 yfuC; iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D YP_2670 putative ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D YP_3657 tbpA3; thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein D YP_3658 thiP; putative transport K02063 thiP; thiamine transport system permease protein D YP_3659 thiQ; thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15] D YP_1262 potF; putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein D YP_1259 potI; putrescine transport system permease protein K11074 potI; putrescine transport system permease protein D YP_1260 potH; putrescine transport system permease protein K11075 potH; putrescine transport system permease protein D YP_1261 potG; putrescine transport ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D YP_2710 potD; putative transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D YP_1873 tbpA1; putative ABC transporter periplasmic binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D YP_2708 potC2; putative ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D YP_1874 potC1; putative binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D YP_2709 potB2; putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D YP_1875 potB1; putative binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D YP_2713 putative ABC-transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D YP_2447 proX; glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D YP_2448 proW3; glycine betaine/L-proline transport system permease K02001 proW; glycine betaine/proline transport system permease protein D YP_2449 proV2; glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D YP_0940 proW2; putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein D YP_0938 proW1; putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein D YP_0939 proV1; putative ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D YP_2071 tauA2; ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic components K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D YP_2072 tauC2; putative transport system permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D YP_2073 tauB2; taurine ATP-binding component of a transport system K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D YP_3076 malE1; maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein D YP_3077 malF6; inner membrane permease of maltose ABC transporter K10109 malF; maltose/maltodextrin transport system permease protein D YP_3078 malG6; maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein D YP_3074 malK2; maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_2299 mtlK; putative mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_3554 putative transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_1496 ABC-type sugar transport systems, ATPase components K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_1497 malK1; putative binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_2927 putative transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_3553 malE2; putative sugar-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein D YP_3552 malF7; putative maltodextrin transport permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D YP_3551 malG7; putative maltodextrin permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein D YP_2051 araF; L-arabinose-binding periplasmic protein precursor K10537 araF; L-arabinose transport system substrate-binding protein D YP_2053 araH9; L-arabinose transport system permease protein K10538 araH; L-arabinose transport system permease protein D YP_2052 araG; L-arabinose transport ATP-binding protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12] D YP_1744 togB; putative sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein D YP_1747 togM; putative ABC sugar transporter (permease) K10193 togM; oligogalacturonide transport system permease protein D YP_1746 malG3; putative sugar ABC transporter (permease) K10194 togN; oligogalacturonide transport system permease protein D YP_1745 togA; putative sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein D YP_1397 mglB; galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein D YP_1399 mglC; galactoside permease K10541 mglC; methyl-galactoside transport system permease protein D YP_1398 mglA4; galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11] D YP_3399 xylF; sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein D YP_3397 araH12; sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein D YP_3398 mglA7; sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10] D YP_2316 rbsB7; sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein D YP_3325 rbsB9; sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein D YP_3482 rbsB10; putative sugar ABC transporter periplasmicbinding protein K10439 rbsB; ribose transport system substrate-binding protein D YP_2314 rbsC1; putative sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein D YP_3326 rbsC2; sugar transport system permease protein K10440 rbsC; ribose transport system permease protein D YP_3484 araH13; putative sugar transport system permeaseprotein K10440 rbsC; ribose transport system permease protein D YP_2315 rbsA2; putative sugar transport system, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YP_3327 rbsA3; sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YP_3483 mglA8; galactoside transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D YP_3140 rbsB8; putative periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein D YP_3143 araH11; putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein D YP_3142 araH10; putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein D YP_3141 mglA6; putative sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9] D YP_0368 rbsB2; putative sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein D YP_0371 araH3; putative sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein D YP_0370 mglA2; putative sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein D YP_3557 rbsB11; sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein D YP_3556 rbsC3; sugar transport system permease K17206 xltB; putative xylitol transport system permease protein D YP_3555 rbsA4; sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein D YP_1134 rbsB3; putative sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein D YP_1132 araH4; sugar transport system permease protein K17209 iatP; inositol transport system permease protein D YP_1133 rbsA1; ATP-binding component of D-ribose high-affinity transport system K17210 iatA; inositol transport system ATP-binding protein D YP_3253 ugpB5; glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D YP_3254 ugpA; sn-glycerol-3-phosphate transport system, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D YP_3255 ugpE; sn-glycerol-3-phosphate transport system, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D YP_3256 ugpC; sn-glycerol-3-phosphate transport, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D YP_3772 rbsB12; putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein D YP_3770 araH14; putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein D YP_3771 araH15; putative ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein D YP_3769 mglA9; putative ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein D YP_3828 putative membrane protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D YP_3829 putative membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D YP_3830 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D YP_3827 putative exported protein K07323 mlaC; phospholipid transport system substrate-binding protein D YP_3826 putative anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein D YP_2296 ugpB3; putative solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D YP_1500 ugpB2; putative exported solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D YP_2930 ugpB4; putative sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D YP_0611 ugpB1; putative sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D YP_2931 malF5; putative permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D YP_2295 malF4; sugar ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D YP_0612 malF2; sugar transport system, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D YP_1499 malF3; putative binding-protein-dependent transport system, inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein D YP_2932 malG5; putative permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D YP_2294 malG4; sugar ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D YP_0613 malG1; sugar transport system, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D YP_1498 malG2; putative binding-protein-dependent transport system, inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein D YP_3914 rbsB13; putative periplasmic binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YP_0358 rbsB1; putative sugar ABC transporter, periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YP_1298 rbsB4; putative periplasmic carbohydrate-binding transport protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YP_1580 rbsB6; putative sugar-binding periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YP_1407 rbsB5; putative sugar ABC transporter K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D YP_3911 araH16; putative ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein D YP_3912 araH17; putative branched-chain amino acid transport system, permease component K02057 ABC.SS.P; simple sugar transport system permease protein D YP_0355 araH1; putative sugar ABC transporter, permeaseprotein K02057 ABC.SS.P; simple sugar transport system permease protein D YP_0356 araH2; putative sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein D YP_1296 araH5; putative ABC transport integral membrane subunit K02057 ABC.SS.P; simple sugar transport system permease protein D YP_1581 araH8; putative sugar transport system permease protein K02057 ABC.SS.P; simple sugar transport system permease protein D YP_1578 araH7; putative permease of ABC transporter K02057 ABC.SS.P; simple sugar transport system permease protein D YP_1442 araH6; ribose transport system, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein D YP_3927 rbsD2; putative carbohydrate transport protein K02057 ABC.SS.P; simple sugar transport system permease protein D YP_0357 mglA1; putative sugar ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_1579 mglA5; ATP binding protein of ABC transporter for ribose K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_1297 mglA3; putative ABC transport ATP-binding subunit K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_3913 mglA10; ABC transporter ATP binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D YP_0729 pstS1; phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D YP_4024 pstS2; putative phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein D YP_2702 pstC1; putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein D YP_4023 pstC2; putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein D YP_2701 pstA1; putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein D YP_4022 pstA2; putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein D YP_2700 pstB1; putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D YP_4021 pstB2; putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D YP_0953 phnD; putative substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein D YP_0951 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein D YP_0952 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein D YP_0954 phnC; ATP-binding component of phosphonate transport K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D YP_2388 hisM; histidine transport system permease protein HisM K10015 hisM; histidine transport system permease protein D YP_2389 hisQ; histidine transport system permease protein HisQ K10016 hisQ; histidine transport system permease protein D YP_2387 hisP; histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1] D YP_2390 hisJ; histidine-binding periplasmic protein of high-affinity histidine transport system K10014 hisJ; histidine transport system substrate-binding protein D YP_2327 glnH2; putative glutamine-binding periplasmic protein K10036 glnH; glutamine transport system substrate-binding protein D YP_2328 glnP; putative glutamine transport system permease K10037 glnP; glutamine transport system permease protein D YP_2329 glnQ3; putative glutamine transport ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D YP_1256 artJ; arginine 3rd transport system periplasmic binding protein K09996 artJ; arginine transport system substrate-binding protein D YP_1245 artI3; arginine-binding periplasmic protein 1 precursor K09997 artI; arginine transport system substrate-binding protein D YP_1247 artM3; arginine transport system permease protein K09998 artM; arginine transport system permease protein D YP_1246 artQ; arginine transport system permease protein K09999 artQ; arginine transport system permease protein D YP_1244 artP; arginine transport ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1] D YP_1098 glnH1; putative amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein D YP_1100 gltK; putative glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein D YP_1099 gltJ1; putative glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein D YP_1101 gltL; putative glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1] D YP_1547 fliY; putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein D YP_1546 artM4; putative amino-acid ABC transporter (permease) K10009 tcyB; L-cystine transport system permease protein D YP_1545 glnQ2; putative amino-acid ABC transporter (ATP-binding protein) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1] D YP_3241 livK2; high-affinity leucine-specificleucine-specific-binding periplasmic protein of high-affinity branched-chain amino acid ABC transporter transport system K01999 livK; branched-chain amino acid transport system substrate-binding protein D YP_3242 livH; high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein D YP_3243 livM3; high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein D YP_3244 livG2; high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D YP_3245 livF3; ATP-binding component of leucine transport K01996 livF; branched-chain amino acid transport system ATP-binding protein D YP_2778 nlpA2; putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D YP_1275 nlpA1; putative exported protein K02073 metQ; D-methionine transport system substrate-binding protein D YP_1273 putative ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein D YP_2777 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein D YP_2776 abc2; ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D YP_1274 abc1; putative ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein D YP_0949 livK1; putative substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein D YP_0948 livM2; putative Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein D YP_0947 livM1; putative Branched-chain amino acid transport system, permease component K11961 urtC; urea transport system permease protein D YP_0946 livG1; putative ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein D YP_0945 livF1; putative ABC transport ATP-binding subunit K11963 urtE; urea transport system ATP-binding protein D YP_1005 livF2; putative amino acid transporter K11963 urtE; urea transport system ATP-binding protein D YP_4018 artI4; putative periplasmic solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D YP_0676 artI2; putative amino acid ABC transporter, periplasmic protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D YP_4016 artM5; putative amino acid transport system permease K02029 ABC.PA.P; polar amino acid transport system permease protein D YP_4017 gltJ2; ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D YP_0678 artM2; putative amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein D YP_0677 artM1; putative amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein D YP_0679 glnQ1; putative amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D YP_1979 oppA3; periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein D YP_2126 mppA; putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D YP_1980 oppB; oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein D YP_1981 oppC; oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein D YP_1982 oppD; oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D YP_1983 oppF2; oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D YP_3365 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein D YP_3364 dppB4; dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein D YP_3363 dppC4; dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein D YP_3362 dppD3; dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein D YP_3361 dppF; dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein D YP_2144 sapA; peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein D YP_2145 sapB2; peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein D YP_2146 sapC; peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein D YP_2147 sapD; peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein D YP_2148 sapF; peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein D YP_2461 oppA4; putative solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D YP_0635 dppB1; putative transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D YP_2462 dppB3; putative membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D YP_0634 dppC1; putative transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D YP_2463 dppC3; binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D YP_0633 dppD1; putative ATP-binding component of dipeptide transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein D YP_2464 dppD2; putative transport ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein D YP_2465 oppF3; putative transport ATPase K02032 ddpF; peptide/nickel transport system ATP-binding protein D YP_0632 oppF1; putative ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D YP_1316 oppA2; putative substrate-binding transport protein K13893 yejA; microcin C transport system substrate-binding protein D YP_1317 dppB2; putative ABC transporter integral membrane subunit K13894 yejB; microcin C transport system permease protein D YP_1318 dppC2; putative ABC transporter integral membrane subunit K13895 yejE; microcin C transport system permease protein D YP_1319 putative ABC transporter ATP-binding subunit K13896 yejF; microcin C transport system ATP-binding protein D YP_0294 fhuD; ferrichrome-binding periplasmic protein precursor K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D YP_0295 fhuB; ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein D YP_0293 fhuC; ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D YP_0436 hmuT; hemin-binding periplasmic protein K25132 hmuT; heme transport system substrate-binding protein D YP_0435 hmuU; hemin transport system permease protein HmuU K25133 hmuU; heme transport system permease protein D YP_0434 hmuV; hemin transport system ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D YP_3014 fepB; ferric enterobactin (enterochelin) binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein D YP_1425 ysuA; putative iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein D YP_1424 ysuB; putative iron-siderophore transport system, transmembrane component K23186 fepD; iron-siderophore transport system permease protein D YP_1423 ysuC; putative iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein D YP_1422 ysuD; putative iron-siderophore transport system, ATP-binding component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-] D YP_3385 fecB3; putative solute-binding iron ABC transport protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D YP_3387 btuC4; putative iron transport permease K25283 yclO; iron-siderophore transport system permease protein D YP_3386 btuC3; putative iron transport permease K25284 yclN; iron-siderophore transport system permease protein D YP_3388 fecE; putative iron ABC transporter, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D YP_3486 fecB4; ABC-type cobalamin/Fe3+-siderophores transport systems, periplasmic components K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D YP_1282 yiuA; putative periplasmic substrate-binding transport protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D YP_1252 btuC1; FecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein D YP_1281 yiuB; putative FecCD-family membrane transport protein K02015 ABC.FEV.P; iron complex transport system permease protein D YP_1280 yiuC; putative siderophore ABC transporter, ATP-binding subunit K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D YP_1251 fepC; putative transport ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D YP_0300 fecB1; putative priplasmic metal binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein D YP_2212 btuC2; vitamin B12 transport permease protein K06073 btuC; vitamin B12 transport system permease protein D YP_2210 btuD; putative vitamin B12 transport ATP-binding protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8] D YP_1904 znuA; exported high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein D YP_1902 znuB; high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein D YP_1903 znuC; high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D YP_2227 yfeA; periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein D YP_2229 yfeC; chelated iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein D YP_2230 yfeD; chelated iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein D YP_2228 yfeB; ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein D YP_0644 putative membrane protein K07091 lptF; lipopolysaccharide export system permease protein D YP_0645 putative membrane protein K11720 lptG; lipopolysaccharide export system permease protein D YP_3836 putative ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D YP_0978 ABC-type multidrug transport system, permease component K25180 ybhR; drug efflux transport system permease protein D YP_0977 ABC-type multidrug transport system, permease component K25181 ybhS; drug efflux transport system permease protein D YP_0976 ccmA2; ABC-type multidrug transport system, ATPase component K25182 ybhF; drug efflux transport system ATP-binding protein D YP_0975 acrA4; Membrane-fusion protein K25183 ybhG; membrane fusion protein YbhG D YP_1755 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D YP_1757 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein D YP_1756 phnL5; lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D YP_2427 ccmD; putative heme exporter protein D K02196 ccmD; heme exporter protein D D YP_2428 ccmC2; putative heme exporter protein C K02195 ccmC; heme exporter protein C D YP_2429 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B D YP_2430 ccmA3; putative heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D YP_3237 ftsX; cell division protein K09811 ftsX; cell division transport system permease protein D YP_3236 ftsE; cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein D YP_0280 putative ABC transporter, integral membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D YP_0279 ccmA1; putative ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D YP_1689 putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D YP_1688 putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D YP_0846 putative permease K02004 ABC.CD.P; putative ABC transport system permease protein D YP_1389 putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein D YP_1387 phnL3; ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D YP_1690 phnL4; ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D YP_0845 phnL2; putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D YP_2189 putative ATP-dependent transporter K09013 sufC; Fe-S cluster assembly ATP-binding protein D YP_2056 putative membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D YP_3442 citT3; Di- and tricarboxylate transporters K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D YP_2179 norM2; putative transport protein K26939 norM; MATE family, multidrug efflux pump D YP_1459 norM1; putative sugar transporter K26937 dinF; MATE family, multidrug efflux pump D YP_1470 lacY; galactoside permease (M protein) K02532 lacY; MFS transporter, OHS family, lactose permease D YP_3653 setA; putative efflux protein K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter D YP_3715 proP31; putative transport protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter D YP_2640 nanT; putative sugar transporter K03290 nanT; MFS transporter, SHS family, sialic acid transporter D YP_2897 exuT1; ExuT transport protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D YP_3544 exuT2; putative sugar transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter D YP_1625 hpaX; putative 4-hydroxyphenylacetate permease K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease D YP_1451 proP14; putative transmembrane transporter K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein D YP_2551 hcaT; putative transport permease protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D YP_3369 uhpC; putative regulatory protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC D YP_2865 proP28; putative membrane protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter D YP_0769 ampG; Beta-lactamase induction signal transducer AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D YP_1949 proP22; putative multidrug resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D YP_1321 bcr; putative drug resistance translocator protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D YP_3960 mdfA; multidrug translocase K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D YP_1883 proP20; putative membrane protein K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein D YP_2859 araJ; putative sugar transport protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D YP_0663 emrB; multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein D YP_1737 proP18; putative transport protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein D YP_2717 yegB; putative membrane protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein D YP_0833 rosA; putative membrane efflux protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D YP_1798 proP19; putative membrane protein K26602 yihN; MFS transporter, GlpU family, inner membrane protein D YP_1213 proP12; putative membrane protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein D YP_1658 ybtX; putative signal transducer K05373 ybtX; MFS transporter, putative signal transducer D YP_0165 proP2; conserved integral membrane protein K06141 tsgA; MFS transporter, TsgA protein D YP_2278 proP25; putative transporter protein K08368 yaaU; MFS transporter, putative metabolite transport protein D YP_2619 ptsI; PTS sytem, enzyme I component K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D YP_2873 ptsP; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D YP_2618 ptsH; PTS system, phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr D YP_3841 ptsO; putative phosphocarrier protein K08485 ptsO; phosphocarrier protein NPr D YP_3776 ptsA; putative phosphoenolpyruvate-protein phosphotransferase K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-] D YP_1294 fruB; PTS system, fructose-specific IIA/fpr component K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202] D YP_2620 crr; PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D YP_2246 ptsG; PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199] D YP_1085 nagE; pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D YP_3847 treB; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D YP_1292 fruA; PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202] D YP_3779 frwD; PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-] D YP_3778 frwB; PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-] D YP_3777 frwC; PTS system, IIC component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component D YP_3979 mtlA; PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197] D YP_2482 celC; PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D YP_2480 celA; PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D YP_2481 celB; PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component D YP_1634 manX1; PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191] D YP_1635 manY; PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component D YP_1636 manZ; PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component D YP_3533 manX3; Phosphotransferase system, mannose/fructose-specific component IIA K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-] D YP_3530 manX2; putative PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-] D YP_3531 putative PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component D YP_3532 putative PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component D YP_2380 ptsN1; phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D YP_2381 sgaB; Phosphotransferase system component IIB of unknown specificity K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D YP_2382 sgaT; putative membrane protein K03475 ulaA; ascorbate PTS system EIIC component D YP_3839 ptsN2; nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D YP_0095 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D YP_2476 kch; putative potassium channel protein K10716 kch; voltage-gated potassium channel D YP_0789 amtB; putative ammonium transporter K03320 amt; ammonium transporter, Amt family D YP_2153 gst2; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D YP_1278 gst1; putative glutathione S-transferase-family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D YP_3815 sspA; putative stringent starvation protein A K03599 sspA; stringent starvation protein A D YP_2631 putative membrane protein K07114 yfbK; Ca-activated chloride channel homolog D YP_1209 focA; putative formate transporter 1 K06212 focA; formate transporter D YP_0161 nirC; putative nitrite transporter K02598 nirC; nitrite transporter D YP_0236 mscL; mechanosensitive ion channel K03282 mscL; large conductance mechanosensitive channel D YP_0802 aefA; putative potassium efflux system K05802 mscK; potassium-dependent mechanosensitive channel D YP_0518 putative membrane transport protein K22051 mscM; miniconductance mechanosensitive channel D YP_3521 mscS2; putative membrane protein K03442 mscS; small conductance mechanosensitive channel D YP_2288 mscS1; putative membrane protein K16053 ybdG; miniconductance mechanosensitive channel D YP_2706 mgtE; putative divalent cation transport protein K06213 mgtE; magnesium transporter D YP_2473 putative urea transporter K08717 utp; urea transporter D YP_3055 motA2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_1794 motA1; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_3056 motB2; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YP_1795 motB1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YP_2997 exbB; TonB complex protein K03561 exbB; biopolymer transport protein ExbB D YP_2998 exbD; ExbD/TolR-family transport protein K03559 exbD; biopolymer transport protein ExbD D YP_1035 tolQ; TolQ colicin import protein K03562 tolQ; biopolymer transport protein TolQ D YP_1034 tolR; TolR colicin import membrane protein K03560 tolR; biopolymer transport protein TolR D YP_3211 corA2; magnesium and cobalt transport protein K03284 corA; magnesium transporter D YP_2125 corA1; Mg2+ and Co2+ transporters K16074 zntB; zinc transporter D YP_1118 crcB1; putative membrane protein K06199 crcB; fluoride exporter D YP_2478 crcB3; putative membrane protein K06199 crcB; fluoride exporter D YP_2477 crcB2; putative membrane protein K06199 crcB; fluoride exporter D YP_0557 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D YP_0387 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D YP_1182 ompC2; putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F D YP_0933 ompC_1; outer membrane protein C2 K11929 phoE; outer membrane pore protein E D YP_0916 ompC1; outer membrane protein C, porin K09475 ompC; outer membrane pore protein C D YP_3073 lamB1; maltoporin K02024 lamB; maltoporin D YP_3547 lamB2; maltoporin K02024 lamB; maltoporin D YP_1326 ompA1; putative outer membrane porin A protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D YP_2321 ompX; putative outer membrane protein K11934 ompX; outer membrane protein X D YP_2550 ail2; attachment invasion locus protein K16078 ail; attachment invasion locus protein D YP_2420 fadL; putative long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein D YP_1721 fimD3; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_3167 fimD5; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_1734 fimD4; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_1287 psaC; outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein D YP_pMT083 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein D YP_1663 fimD2; putative fimbrial usher protein K07347 fimD; outer membrane usher protein D YP_3415 yapH; putative autotransporter protein K12678 aidA-I; autotransporter family porin D YP_3138 btuB; putative vitamin B12 receptor protein K16092 btuB; vitamin B12 transporter D YP_3127 hasA; hemophore HasA K12545 hasA; heme acquisition protein HasA D YP_3126 hasR; putative TonB dependent receptor protein K16152 hasR; heme acquisition protein HasR D YP_1649 fyuA; pesticin/yersiniabactin receptor protein K15721 fyuA; pesticin/yersiniabactin receptor D YP_1426 ysuR; putative iron-siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid D YP_0347 cirA2; putative outer membrane receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D YP_1279 yiuR; putative outer membrane protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins D YP_0438 hmuR; hemin receptor precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D YP_3485 cirA5; putative hydroxamate-type ferrisiderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D YP_0166 cirA1; putative membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein D YP_3422 cirA4; putative TonB-dependent outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D YP_3446 iutA; putative ferric siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D YP_2978 hasF; ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YP_0602 ibeB; putative outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D YP_2798 putative surface antigen K07277 SAM50; outer membrane protein insertion porin family D YP_2742 putative lipoprotein K17713 bamB; outer membrane protein assembly factor BamB D YP_2683 dapX; lipoprotein K07287 bamC; outer membrane protein assembly factor BamC D YP_0653 nrfG1; putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD D YP_1052 smpA; SmpA / OmlA family K06186 bamE; outer membrane protein assembly factor BamE D YP_0559 putative exported protein K07278 tamA; translocation and assembly module TamA D YP_0560 putative exported protein K09800 tamB; translocation and assembly module TamB D YP_3358 putative exported protein K22110 kdgM; oligogalacturonate-specific porin family protein D YP_1743 putative exported protein K22110 kdgM; oligogalacturonate-specific porin family protein D YP_3835 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D YP_3834 putative exported protein K11719 lptC; lipopolysaccharide export system protein LptC D YP_3684 imp; organic solvent tolerance protein precursor K04744 lptD; LPS-assembly protein D YP_1104 rlpB; rare lipoprotein B precursor K03643 lptE; LPS-assembly lipoprotein D YP_pCD54 yopB; putative Yop targeting protein YopB K23475 yopB; transloator D YP_pCD55 yopD; putative Yop negative regulation/targeting component YopD K23476 yopD; transloator D YP_0491 putative exported protein K19298 subB; subtilase cytotoxin, subunit B D YP_1096 corC; putative membrane protein K06189 corC; hemolysin (HlyC) family protein D YP_1404 putative membrane protein K06518 cidA; holin-like protein D YP_0913 melB1; putative transport protein K16210 togT; oligogalacturonide transporter D YP_1283 lysP; putative lysine-specific permease K11733 lysP; lysine-specific permease D YP_0263 aroP1; aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP D YP_1484 aroP2; aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP D YP_0731 ansP1; proline permease transport protein K11736 proY; proline-specific permease ProY D YP_1534 cycA; D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter D YP_1679 ansP2; L-asparagine permease K11738 ansP; L-asparagine permease D YP_2091 potE3; putative amino acid antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D YP_0937 potE1; putative amino acid permease K03759 adiC; arginine:agmatine antiporter D YP_2970 asoB; putative permease K16263 yjeH; amino acid efflux transporter D YP_1027 czcD; putative cation transport protein K16264 czcD; cobalt-zinc-cadmium efflux system protein D YP_0079 mMT11; putative integral membrane protein K13283 fieF; ferrous-iron efflux pump FieF D YP_0798 acrB2; multidrug efflux protein K18138 acrB; multidrug efflux pump D YP_0601 acrB1; multidrug efflux protein K18138 acrB; multidrug efflux pump D YP_3412 acrF; putative integral membrane efflux protein K18138 acrB; multidrug efflux pump D YP_2666 acrD; multidrug efflux protein K18324 acrD; multidrug efflux pump D YP_2715 acrB3; AcrB/AcrD/AcrF family membrane protein K07788 mdtB; multidrug efflux pump D YP_2716 acrB4; AcrB/AcrD/AcrF family membrane protein K07789 mdtC; multidrug efflux pump D YP_2119 qacE; quaternary ammonium compound-resistance protein K03297 emrE; small multidrug resistance pump D YP_0511 sugE; suppresses groEL, may be chaperone K11741 sugE; quaternary ammonium compound-resistance protein SugE D YP_1912 emrE2; putative integral membrane protein K11742 mdtI; spermidine export protein MdtI D YP_1911 emrE1; Membrane transporters of cations and cationic drugs K11743 mdtJ; spermidine export protein MdtJ D YP_2490 putative membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein D YP_2322 rhaT11; putative membrane protein K11939 rhtA; inner membrane transporter RhtA D YP_0489 rhaT2; L-rhamnose-proton symport protein K02856 rhaT; L-rhamnose-H+ transport protein D YP_3212 rarD; putative membrane protein K05786 rarD; chloramphenicol-sensitive protein RarD D YP_2204 rhaT9; putative membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE D YP_3434 gntP; putative gluconate transporter K16321 gntP; high-affinity gluconate transporter D YP_3316 gntT1; putative gluconate permease K06155 gntT; Gnt-I system high-affinity gluconate transporter D YP_3342 gntT2; GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D YP_0501 dcuA; anaerobic C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA D YP_0991 betT1; high-affinity choline transport protein K02168 betT; choline/glycine/proline betaine transport protein D YP_1703 chaA; calcium/proton antiporter K07300 chaA; Ca2+:H+ antiporter D YP_3831 putative sodium/calcium exchanger protein K07301 yrbG; cation:H+ antiporter D YP_3330 pitA; low-affinity inorganic phosphate transport protein K16322 pit; low-affinity inorganic phosphate transporter D YP_3890 panF; sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter D YP_1540 putP2; proline permease K11928 putP; sodium/proline symporter D YP_0404 putP1; putative transmembrane transport protein K14393 actP; cation/acetate symporter D YP_0407 gltP; proton glutamate symport protein K11102 gltP; proton glutamate symport protein D YP_3355 dctA; C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein D YP_2904 sstT; Na/dicarboxylate symporter K07862 sstT; serine/threonine transporter D YP_0036 gltS; sodium/glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family D YP_3710 nhaA; sodium-proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family D YP_1945 nhaB; Na+/H+ antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family D YP_3917 nhaP; putative Na(+)/H(+) exchanger protein K24163 nhaK; monovalent cation/hydrogen antiporter D YP_0189 kefB; putative potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D YP_0188 mdaB1; Putative NADPH-quinone reductase (modulator of drug activity B) K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG D YP_0832 rosB; putative potassium antiporter K26735 KEA4_5_6; K+:H+ antiporter D YP_3285 trkH; Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein D YP_0237 trkA; trk system potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein D YP_0035 uraA; putative membrane permease K16345 xanP; xanthine permease XanP D YP_3918 putative xanthine/uracil permease K06901 pbuG; adenine/guanine/hypoxanthine permease D YP_4014 putative membrane/transport protein, symporter K06901 pbuG; adenine/guanine/hypoxanthine permease D YP_2608 nupC1; nucleoside permease K11535 nupC; nucleoside transport protein D YP_0929 tyrP; tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein D YP_1306 mtr; putative tryptophan-specific transport protein K03835 mtr; tryptophan-specific transport protein D YP_1271 sdaC2; serine transporter K03837 sdaC; serine transporter D YP_0432 sdaC1; putative transmembrane transport protein K26603 yhjV; inner membrane transport protein D YP_0297 eriC1; putative chloride channel protein K03281 clcA; chloride channel protein, CIC family D YP_2066 eriC2; putative membrane protein K03281 clcA; chloride channel protein, CIC family D YP_2474 hoxN; putative nickel transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein D YP_1870 sUL1; sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D YP_2607 mntH; manganese transport protein MntH K03322 mntH; manganese transport protein D YP_0340 arsB; arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein D YP_3187 wzxE; putative lipopolysaccharide biosynthesis protein K16693 wzxE; enterobacterial common antigen flippase D YP_1886 mviN; putative membrane protein K03980 murJ; putative peptidoglycan lipid II flippase D YP_2740 putative membrane protein K13936 mdcF; malonate transporter and related proteins D YP_3258 putative inner membrane permease K13936 mdcF; malonate transporter and related proteins D YP_0006 kup; potassium transport protein K03549 kup; KUP system potassium uptake protein D YP_3217 rhtB2; putative homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein D YP_3216 rhtC; threonine efflux protein K05835 rhtC; threonine efflux protein D YP_3696 rhtB3; Putative threonine efflux protein K05835 rhtC; threonine efflux protein D YP_0668 azlC; putative amino acid transporter K26605 azlC; branched chain amino acid efflux pump D YP_0667 putative membrane protein K26606 azlD; branched chain amino acid efflux pump D YP_3857 putative membrane protein K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB D YP_2936 putative membrane protein K15547 mdtO; multidrug resistance protein MdtO D YP_2690 perM3; putative membrane protein K03548 perM; putative permease D YP_3226 hypothetical protein K09125 yhhQ; queuosine precursor transporter D YP_2225 marC2; multiple antibiotic resistance protein K05595 marC; multiple antibiotic resistance protein D YP_3630 ftsW2; cell division protein FtsW K03588 ftsW; cell division protein FtsW D YP_1638 putative membrane protein K23242 mntP; manganese efflux pump family protein D YP_1685 fTR12; putative membrane protein K07243 FTR; high-affinity iron transporter D YP_1539 fTR11; putative membrane protein K07243 FTR; high-affinity iron transporter D YP_1538 putative periplasmic lipoprotein involved in iron transport K07224 efeO; iron uptake system component EfeO D YP_1537 putative iron-dependent peroxidase K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-] D YP_1686 putative exported protein K07230 p19; periplasmic iron binding protein D YP_2554 putative membrane protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein D YP_1992 tonB; TonB protein K03832 tonB; periplasmic protein TonB D YP_3130 hasB; putative membrane protein K03832 tonB; periplasmic protein TonB D YP_1031 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein D YP_1033 tolA; TolA colicin import membrane protein K03646 tolA; colicin import membrane protein D YP_1032 tolB; TolB colicin import protein K03641 tolB; TolB protein D YP_0361 dmsA1; anaerobic dimethyl sulfoxide reductase subunit A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D YP_2590 dmsA2; putative dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3] D YP_0362 dmsB1; anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D YP_2591 dmsB2; putative dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B D YP_0363 dmsC1; anaerobic dimethyl sulfoxide reductase subunit C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D YP_2592 dmsC2; anaerobic dimethyl sulfoxide reductase subunit B K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C D YP_2863 bisC; putative biotin sulfoxide reductas2 K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-] D YP_0664 emrA; multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system D YP_2937 emrK1; putative HlyD family secretion protein K15549 mdtN; membrane fusion protein, multidrug efflux system D YP_3129 hasE; HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system D YP_0101 acrA1; putative secretion permease K13408 cvaA; membrane fusion protein D YP_0600 acrA2; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_0799 acrA3; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_1016 putative membrane protein K25859 acrZ; accessory protein, multidrug efflux pump D YP_2714 acrA8; putative HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system D YP_1230 acrA5; putative HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system D YP_2624 acrA7; putative HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system D YP_3858 emrK2; putative HlyD family secretion protein K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA D YP_1028 pnuC; intergral membrane NMN transport protein PnuC K03811 pnuC; nicotinamide mononucleotide transporter D YP_0134 feoA; putative ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D YP_0133 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D YP_0132 hypothetical protein K07490 feoC; ferrous iron transport protein C D YP_3332 uspB; universal stress protein B K06144 uspB; universal stress protein B D YP_2425 ccmF; putative cytochrome c-type biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF D YP_1790 mgtC; Mg(2+) transport ATPase protein C K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D YP_2118 sapB; putative membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D YP_1607 pcoD; putative copper resistance protein D K07245 pcoD; copper resistance protein D D YP_1608 copC; Uncharacterized protein, like Cu resistance protein CopC K07156 copC; copper resistance protein C D YP_1955 putative exported protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:ypm02044] D YP_2978 hasF; ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YP_2048 sunT-2; putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE D YP_3128 hasD; ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D YP_3129 hasE; HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system D YP_0101 acrA1; putative secretion permease K13408 cvaA; membrane fusion protein D YP_0100 sunT; putative secretion ATPase K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB D YP_2839 general secretion pathway protein C K02452 gspC; general secretion pathway protein C D YP_2840 gspD3; putative general secretion protein K02453 gspD; general secretion pathway protein D D YP_2841 gspE; general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8] D YP_2842 hofF; putative general protein secretion protein K02455 gspF; general secretion pathway protein F D YP_2843 hofG1; general secretion pathway protein G K02456 gspG; general secretion pathway protein G D YP_2844 hofG2; General secretory pathway proteins G and H and related periplasmic/secreted proteins K02457 gspH; general secretion pathway protein H D YP_2845 hofG3; general secretion pathway protein I K02458 gspI; general secretion pathway protein I D YP_2846 hofG4; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J D YP_2847 gspK; general secretion pathway protein K K02460 gspK; general secretion pathway protein K D YP_2848 gspL; general secretion pathway protein L K02461 gspL; general secretion pathway protein L D YP_2850 pppA1; putative type IV prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D YP_2851 putative lipoprotein K02465 gspS; general secretion pathway protein S D YP_2747 pilF; putative fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF D YP_3502 putative ATPases involved in pili biogenesis, PilT homologs K02669 pilT; twitching motility protein PilT D YP_3009 pppA2; putative membrane protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D YP_3008 putative membrane protein K02279 cpaB; pilus assembly protein CpaB D YP_3006 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D YP_3005 putative type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D YP_3004 putative membrane protein K12510 tadB; tight adherence protein B D YP_3003 putative exported protein K12511 tadC; tight adherence protein C D YP_3002 nrfG5; TPR-repeat-containing proteins K12512 tadD; tight adherence protein D D YP_3001 hypothetical protein K12513 tadE; tight adherence protein E D YP_3000 hypothetical protein K12514 tadF; tight adherence protein F D YP_2999 putative membrane protein K12515 tadG; tight adherence protein G D YP_2877 hofG5; putative prepilin peptidase dependent protein K02679 ppdA; prepilin peptidase dependent protein A D YP_2878 hofG6; putative prepilin peptidase dependent protein K02680 ppdB; prepilin peptidase dependent protein B D YP_2880 hofG7; putative prepilin peptidase dependent protein K02681 ppdC; prepilin peptidase dependent protein C D YP_0259 ppdD; putative prepilin peptidase dependent protein D precursor K02682 ppdD; prepilin peptidase dependent protein D D YP_0258 hofB; putative integral membrane protein K02504 hofB; protein transport protein HofB D YP_0257 hofC; putative type II secretion system protein K02505 hofC; protein transport protein HofC D YP_0147 ftsA1; putative ATPases of the HSP70 class involved in cell division K12288 hofM; pilus assembly protein HofM D YP_0148 putative membrane protein K12289 hofN; pilus assembly protein HofN D YP_0149 hypothetical protein K12290 hofO; pilus assembly protein HofO D YP_0150 hypothetical protein K12291 hofP; pilus assembly protein HofP D YP_0152 gspD1; putative membrane transport protein K02507 hofQ; protein transport protein HofQ D YP_3499 putative membrane protein K02221 yggT; YggT family protein D YP_0779 comEA; putative exported protein K02237 comEA; competence protein ComEA D YP_1199 comEC; putative membrane protein K02238 comEC; competence protein ComEC D YP_0410 gspD2; putative type III secretion protein K03219 yscC; type III secretion protein C D YP_pCD31 yscC; putative type III secretion protein YscC K03219 yscC; type III secretion protein C D YP_0411 putative type-III secretion protein K03220 yscD; type III secretion protein D D YP_pCD30 yscD; putative type III secretion protein YscD K03220 yscD; type III secretion protein D D YP_0414 putative type III secretion apparatus K03221 yscF; type III secretion protein F D YP_pCD28 yscF; putative type III secretion protein YscF K03221 yscF; type III secretion protein F D YP_pCD25 yscI; putative type III secretion protein YscI K04053 yscI; type III secretion protein I D YP_0417 fliF1; type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J D YP_pCD24 yscJ; putative type III secretion lipoprotein YscJ K03222 yscJ; type III secretion protein J D YP_pCD23 yscK; putative type III secretion protein YscK K04054 yscK; type III secretion protein K D YP_pCD22 yscL; putative typee III secretion protein YscL K03223 yscL; type III secretion protein L D YP_0421 fliI1; putative type III secretion system ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D YP_pCD43 yscN; putative Yops secretion ATP synthase YscN K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D YP_pCD42 yscO; putative type III secretion protein YscO K04056 yscO; type III secretion protein O D YP_pCD41 yscP; putative type III secretion protein YscP K04057 yscP; type III secretion protein P D YP_0424 fliN1; type III secretion system apparatus protein K03225 yscQ; type III secretion protein Q D YP_pCD40 yscQ; putative type III secretion protein YscQ K03225 yscQ; type III secretion protein Q D YP_0425 fliP1; putative type III secretion apparatus protein K03226 yscR; type III secretion protein R D YP_pCD39 yscR; putative Yop secretion membrane protein YscR K03226 yscR; type III secretion protein R D YP_0426 fliQ1; putative type III secretion apparatus protein K03227 yscS; type III secretion protein S D YP_pCD38 yscS; type III secretion protein yscS YscS K03227 yscS; type III secretion protein S D YP_0427 fliR1; putative type III secretion apparatus protein K03228 yscT; type III secretion protein T D YP_pCD37 yscT; putative type III secretion protein YscT K03228 yscT; type III secretion protein T D YP_0428 flhB1; putative type III secretion system component K03229 yscU; type III secretion protein U D YP_pCD36 yscU; putative type III secretion protein YscU K03229 yscU; type III secretion protein U D YP_0420 flhA1; putative type III secretion system component K03230 yscV; type III secretion protein V D YP_pCD49 yscV; putative membrane-bound Yop protein YscV K03230 yscV; type III secretion protein V D YP_pCD44 yopN; putative membrane-bound Yop targeting protein YopN K04058 yscW; type III secretion protein W D YP_pCD47 yscX; putative type III secretion protein YscX K04059 yscX; type III secretion protein X D YP_pCD33 yscA; hypothetical protein YscA K04048 yscA; type III secretion protein A D YP_pCD32 yscB; hypothetical protein K04049 yscB; type III secretion protein B D YP_pCD29 yscE; putative type III secretion protein YscE K04050 yscE; type III secretion protein E D YP_pCD27 yscG; putative type III secretion protein YscG K04051 yscG; type III secretion protein G D YP_pCD26 yscH; putative type III secretion protein YscH K04052 yscH; type III secretion protein H D YP_pCD21 yscM; putative type III secretion regulatory protein YscM K04055 yscM; type III secretion protein M D YP_pCD48 yscY; putative type III secretion protein YscY K04060 yscY; type III secretion protein Y D YP_1601 flhA2; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D YP_3018 flhB3; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D YP_1602 flhB2; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D YP_3026 fliF3; putative flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YP_1562 fliF2; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YP_3028 fliH2; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D YP_1564 fliH1; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D YP_3029 fliI3; putative flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YP_1565 fliI2; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YP_3022 fliN2; flagellar switch protein K02417 fliN; flagellar motor switch protein FliN D YP_1570 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D YP_1571 fliO; flagellar biosynthesis protein K02418 fliO; flagellar protein FliO/FliZ D YP_3021 fliP3; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D YP_1572 fliP2; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D YP_3020 fliQ3; Flagellar biosynthesis/type III secretory pathway protein K02420 fliQ; flagellar biosynthesis protein FliQ D YP_1573 fliQ2; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D YP_3019 fliR3; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D YP_1574 fliR2; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D YP_pCRY07 virB1; type IV secretory pathway VirB1 component K03194 virB1; type IV secretion system protein VirB1 D YP_pCRY08 virB2; type IV secretory pathway VirB2 component K03197 virB2; type IV secretion system protein VirB2 D YP_pCRY09 virB4; type IV secretory pathway VirB4 component K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8] D YP_pCRY10 virB5; type IV secretion system VirB5 component K03200 virB5; type IV secretion system protein VirB5 D YP_pCRY12 virB6; type IV secretory pathway VirB6 component K03201 virB6; type IV secretion system protein VirB6 D YP_pCRY13 virB8; type IV secretion system VirB8 component K03203 virB8; type IV secretion system protein VirB8 D YP_pCRY14 virB9; type IV secretory pathway VirB9 component K03204 virB9; type IV secretion system protein VirB9 D YP_pCRY15 virB10; type IV secretory pathway VirB10 component K03195 virB10; type IV secretion system protein VirB10 D YP_pCRY16 virB11; type IV secretory pathway VirB11 component K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8] D YP_3587 dsbC; thiol:disulfide interchange protein (DsbC) K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1] D YP_3415 yapH; putative autotransporter protein K12678 aidA-I; autotransporter family porin D YP_1206 putative exported protein K12342 yadB_C; adhesin YadB/C D YP_1205 putative exported protein K12342 yadB_C; adhesin YadB/C D YP_1887 fhaC1; putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D YP_3083 hylA; hemolysin K11016 shlA; hemolysin D YP_2442 icmF2; putative membrane protein K11891 impL; type VI secretion system protein ImpL D YP_3947 icmF4; putative exported protein K11891 impL; type VI secretion system protein ImpL D YP_1371 icmF1; putative membrane protein K11891 impL; type VI secretion system protein ImpL D YP_3664 icmF3; hypothetical protein K11891 impL; type VI secretion system protein ImpL D YP_3952 putative membrane protein K11892 impK; type VI secretion system protein ImpK D YP_1359 putative membrane protein K11892 impK; type VI secretion system protein ImpK D YP_3464 putative membrane protein K11892 impK; type VI secretion system protein ImpK D YP_3665 hypothetical protein K11892 impK; type VI secretion system protein ImpK D YP_1358 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YP_3463 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YP_2761 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YP_3953 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YP_3666 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ D YP_2575 hypothetical protein K11895 impH; type VI secretion system protein ImpH D YP_3956 hypothetical protein K11895 impH; type VI secretion system protein ImpH D YP_1376 hypothetical protein K11895 impH; type VI secretion system protein ImpH D YP_3674 hypothetical protein K11895 impH; type VI secretion system protein ImpH D YP_1375 hypothetical protein K11896 impG; type VI secretion system protein ImpG D YP_2574 hypothetical protein K11896 impG; type VI secretion system protein ImpG D YP_3675 hypothetical protein K11896 impG; type VI secretion system protein ImpG D YP_2437 hypothetical protein K11897 impF; type VI secretion system protein ImpF D YP_3676 hypothetical protein K11897 impF; type VI secretion system protein ImpF D YP_2758 hypothetical protein K11900 impC; type VI secretion system protein ImpC D YP_3462 hypothetical protein K11900 impC; type VI secretion system protein ImpC D YP_3067 hypothetical protein K11900 impC; type VI secretion system protein ImpC D YP_1357 hypothetical protein K11900 impC; type VI secretion system protein ImpC D YP_3678 hypothetical protein K11900 impC; type VI secretion system protein ImpC D YP_2757 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YP_3068 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YP_3461 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YP_1356 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YP_3679 hypothetical protein K11901 impB; type VI secretion system protein ImpB D YP_2576 hypothetical protein K11902 impA; type VI secretion system protein ImpA D YP_3680 hypothetical protein K11902 impA; type VI secretion system protein ImpA D YP_3069 hcp7; Hemolysin-coregulated protein (uncharacterized) K11903 hcp; type VI secretion system secreted protein Hcp D YP_2759 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YP_1361 hcp3; Hemolysin-coregulated protein (uncharacterized) K11903 hcp; type VI secretion system secreted protein Hcp D YP_3677 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp D YP_3466 hcp8; Hemolysin-coregulated protein (uncharacterized) K11903 hcp; type VI secretion system secreted protein Hcp D YP_3437 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YP_1363 vgrG1; Phage late control gene D protein (GPD) K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3468 vgrG4; hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YP_2441 vgrG2; Phage late control gene D protein (GPD) K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3935 vgrG6; putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3944 vgrG7; putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3672 vgrG5; hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D YP_3066 hypothetical protein K11905 K11905; type VI secretion system protein D YP_1378 hypothetical protein K11905 K11905; type VI secretion system protein D YP_3954 putative lipoprotein K11906 vasD; type VI secretion system protein VasD D YP_1377 hypothetical protein K11906 vasD; type VI secretion system protein VasD D YP_2760 putative exported protein K11906 vasD; type VI secretion system protein VasD D YP_3667 putative lipoprotein K11906 vasD; type VI secretion system protein VasD D YP_1362 clpA2; putative ATPase subunit of ATP-dependent protease K11907 vasG; type VI secretion system protein VasG D YP_2573 clpA3; putative Clp ATPase K11907 vasG; type VI secretion system protein VasG D YP_3951 clpB4; Clp ATPase K11907 vasG; type VI secretion system protein VasG D YP_3673 clpB2; putative Clp ATPase K11907 vasG; type VI secretion system protein VasG D YP_3467 clpB3; Clp ATPase K11907 vasG; type VI secretion system protein VasG D YP_3948 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ D YP_1379 hypothetical protein K11911 vasL; type VI secretion system protein VasL D YP_3945 hypothetical protein K11911 vasL; type VI secretion system protein VasL D YP_3946 hypothetical protein K11911 vasL; type VI secretion system protein VasL D YP_3955 FHA-domain-containing protein K11894 impI; type VI secretion system protein ImpI D YP_2438 hypothetical protein K11898 impE; type VI secretion system protein ImpE D YP_3949 hypothetical protein K11909 vasI; type VI secretion system protein VasI D YP_3169 fimA6; putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_1665 fimA1; fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_1735 fimA3; putative fimbrial component K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_1732 fimA2; putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_2572 fimA4; putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_3168 fimC8; putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein D YP_1736 fimC5; putative chaperone protein K07346 fimC; fimbrial chaperone protein D YP_1722 fimC4; putative chaperone protein K07346 fimC; fimbrial chaperone protein D YP_1721 fimD3; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_3167 fimD5; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_1734 fimD4; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_1287 psaC; outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein D YP_pMT083 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein D YP_1663 fimD2; putative fimbrial usher protein K07347 fimD; outer membrane usher protein D YP_1724 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_1720 putative membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_1723 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_1725 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_3405 fimD7; putative membrane protein K12518 papC; outer membrane usher protein PapC D YP_3012 fimC6; fimbrial chaperone protein K12519 papD; chaperone protein PapD D YP_3620 secA; preprotein translocase SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D YP_0067 secB; protein-export protein K03071 secB; preprotein translocase subunit SecB D YP_0742 secD1; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D YP_3116 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE D YP_0743 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D YP_0584 secG; protein-export membrane protein K03075 secG; preprotein translocase subunit SecG D YP_3621 putative exported protein K13301 secM; secretion monitor D YP_0227 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY D YP_0389 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D YP_3235 ftsY; cell division protein K03110 ftsY; fused signal recognition particle receptor D YP_0741 yajC; putative membrane protein K03210 yajC; preprotein translocase subunit YajC D YP_4009 yidC; putative membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase D YP_3271 tatA; Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA D YP_3272 tatB; Sec-independent protein translocase protein TatB K03117 tatB; sec-independent protein translocase protein TatB D YP_3273 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC D YP_1117 tatE; sec-independent protein translocase protein K03425 tatE; sec-independent protein translocase protein TatE C 02042 Bacterial toxins [BR:ypm02042] D YP_0491 putative exported protein K19298 subB; subtilase cytotoxin, subunit B D YP_3872 tccC2; putative insecticidal toxin K11021 tccC; insecticidal toxin complex protein TccC D YP_3871 tccC1; putative toxin subunit K11021 tccC; insecticidal toxin complex protein TccC D YP_2099 rhsA1; putative insecticidal toxin complex K11021 tccC; insecticidal toxin complex protein TccC D YP_2166 sepC; insecticial toxin K11021 tccC; insecticidal toxin complex protein TccC D YP_0557 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D YP_0387 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D YP_3083 hylA; hemolysin K11016 shlA; hemolysin D YP_1887 fhaC1; putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein D YP_3597 putative hemolysin III K11068 hlyIII; hemolysin III D YP_pMT119 ymt; murine toxin K11009 ymt; murine toxin C 02022 Two-component system [BR:ypm02022] D YP_0728 phoR; phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D YP_0727 phoB; phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D YP_2633 ompR2; putative response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D YP_1763 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YP_1764 phoP; response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D YP_0138 envZ; osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D YP_0137 ompR1; transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D YP_2093 rstA; two-component regulatory system, response regulator protein K07661 rstA; two-component system, OmpR family, response regulator RstA D YP_0073 cpxA; two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3] D YP_0074 cpxR1; two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR D YP_3591 creC; putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3] D YP_3592 creB; putative response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB D YP_2718 baeS8; Signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] D YP_2719 ompR3; transcriptional response regulatory protein (sensor BaeS) K07664 baeR; two-component system, OmpR family, response regulator BaeR D YP_0575 basS; two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3] D YP_0576 basR; two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR D YP_1847 baeS4; putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D YP_1848 copR; transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D YP_2492 kdpD1; two-component regulatory protein sensor kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] D YP_2491 kdpE; two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE D YP_3809 arcB; aerobic respiration control sensor/response regulatory protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3] D YP_3725 arcA; aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA D YP_2622 baeS6; putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D YP_2623 cpxR2; putative two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator D YP_1704 narX; nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3] D YP_2664 narP; nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP D YP_3370 Signal transduction histidine kinase, glucose-6-phosphate specific K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3] D YP_3371 uhpA2; response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA D YP_1464 uhpA1; putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR D YP_0920 rcsC; two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3] D YP_0919 rcsB; putative two component response regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB D YP_0304 barA; two-component regulatory protein K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3] D YP_1528 uvrY; response regulator protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY D YP_1666 baeS3; putative Histidine protein kinase sensor K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3] D YP_1667 fimZ; putative two-component response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ D YP_3305 putative membrane protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D YP_0397 lytT; two-component system response regulator K02477 K02477; two-component system, LytTR family, response regulator D YP_0024 ntrB; Two component regulatory protein involved in nitrogen assimilation K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D YP_0023 ntrC; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D YP_0984 baeS2; Signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] D YP_0983 atoC1; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07713 zraR; two-component system, NtrC family, response regulator HydG D YP_2541 baeS5; two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3] D YP_2543 atoC2; two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR D YP_1796 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YP_1810 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D YP_1809 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D YP_0409 baeS1; two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA D YP_0408 citB1; putative two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB D YP_3024 atoC3; sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC D YP_1972 hnr; putative response regulator K02485 rssB; two-component system, response regulator C 02035 Bacterial motility proteins [BR:ypm02035] D YP_1796 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D YP_1797 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D YP_1808 cheR; protein glutamate methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D YP_1809 cheB; protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D YP_1810 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D YP_1811 cheZ; chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ D YP_0911 tar1; putative methyl-accepting chemotaxis transmembrane protein K03406 mcp; methyl-accepting chemotaxis protein D YP_2330 atoS2; putative chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein D YP_1806 cheD1; methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YP_2855 cheD2; putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor D YP_3973 tar3; methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor D YP_1807 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor D YP_1774 aer; putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor D YP_3028 fliH2; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D YP_1564 fliH1; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D YP_3029 fliI3; putative flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YP_1565 fliI2; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D YP_1566 fliJ; flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D YP_1571 fliO; flagellar biosynthesis protein K02418 fliO; flagellar protein FliO/FliZ D YP_3021 fliP3; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D YP_1572 fliP2; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP D YP_3020 fliQ3; Flagellar biosynthesis/type III secretory pathway protein K02420 fliQ; flagellar biosynthesis protein FliQ D YP_1573 fliQ2; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D YP_3019 fliR3; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D YP_1574 fliR2; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D YP_1601 flhA2; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D YP_3018 flhB3; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D YP_1602 flhB2; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D YP_1600 flhE; flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE D YP_3027 fliG2; Flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG D YP_1563 fliG1; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D YP_3023 fliM; Flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM D YP_1569 fliM1; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D YP_3022 fliN2; flagellar switch protein K02417 fliN; flagellar motor switch protein FliN D YP_1570 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D YP_3026 fliF3; putative flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YP_1562 fliF2; flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF D YP_3041 flgI2; putative flagella basal body protein K02394 flgI; flagellar P-ring protein FlgI D YP_1587 flgI1; flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI D YP_3033 lfgA; putative flagellar protein K02386 flgA; flagellar basal body P-ring formation protein FlgA D YP_1595 flgA; flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D YP_3040 flgH2; putative flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D YP_1588 flgH1; basal-body outer-membrane L (lipopolysaccharide layer) ring protein K02393 flgH; flagellar L-ring protein FlgH D YP_3053 putative flagellar biogenesis protein K02415 fliL; flagellar protein FliL D YP_1568 fliL; flagellar protein FliL K02415 fliL; flagellar protein FliL D YP_3025 fliE2; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D YP_1561 fliE1; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D YP_3052 fliK2; putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D YP_1567 fliK1; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK D YP_3034 flgB2; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D YP_1594 flgB1; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D YP_3035 flgC2; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D YP_1593 flgC1; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D YP_3036 flgD2; basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D YP_1592 flgD1; basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD D YP_3038 flgF2; putative flagellar rod protein K02391 flgF; flagellar basal-body rod protein FlgF D YP_1590 flgF1; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D YP_3039 flgG2; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D YP_1589 flgG1; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D YP_3042 flgJ2; flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D YP_1586 flgJ1; flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ D YP_3037 flgE2; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D YP_1591 flgE1; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D YP_3043 flgK2; putative flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1 D YP_1585 flgK1; flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1 D YP_1584 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D YP_3031 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN D YP_1597 flgN1; flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN D YP_1551 fliC; thermoregulated motility protein K02406 fliC; flagellin D YP_3049 fliD2; putative flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2 D YP_1552 fliD1; flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D YP_3050 fliS2; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D YP_1553 fliS1; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D YP_1554 fliT; repressor of class 3a and 3b operons (RflA activity) K02423 fliT; flagellar protein FliT D YP_1793 flhC; flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC D YP_3054 fliA2; putative RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YP_1550 fliA1; RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA D YP_3055 motA2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_1794 motA1; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D YP_3056 motB2; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YP_1795 motB1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D YP_3024 atoC3; sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC D YP_1547 fliY; putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein D YP_1549 fliZ; putative alternative sigma factor regulatory protein K02425 fliZ; regulator of sigma S factor FliZ D YP_3032 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM D YP_1596 flgM; negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM D YP_3502 putative ATPases involved in pili biogenesis, PilT homologs K02669 pilT; twitching motility protein PilT D YP_2747 pilF; putative fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF D YP_3009 pppA2; putative membrane protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D YP_3008 putative membrane protein K02279 cpaB; pilus assembly protein CpaB D YP_3006 hypothetical protein K02282 cpaE; pilus assembly protein CpaE D YP_3005 putative type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D YP_3169 fimA6; putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_1665 fimA1; fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_1735 fimA3; putative fimbrial component K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_1732 fimA2; putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_2572 fimA4; putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin) D YP_3168 fimC8; putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein D YP_1736 fimC5; putative chaperone protein K07346 fimC; fimbrial chaperone protein D YP_1722 fimC4; putative chaperone protein K07346 fimC; fimbrial chaperone protein D YP_1721 fimD3; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_3167 fimD5; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_1734 fimD4; putative outer membrane usher protein K07347 fimD; outer membrane usher protein D YP_1287 psaC; outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein D YP_pMT083 caf1A; putative F1 capsule anchoring protein K07347 fimD; outer membrane usher protein D YP_1663 fimD2; putative fimbrial usher protein K07347 fimD; outer membrane usher protein D YP_1724 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_1720 putative membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_1723 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 D YP_1725 putative exported protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6 C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:ypm04812] D YP_3881 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D YP_3624 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D YP_3625 ftsA2; cell division protein FtsA K03590 ftsA; cell division protein FtsA D YP_1921 minC; cell division inhibitor K03610 minC; septum site-determining protein MinC D YP_1920 minD; septum site-determining protein K03609 minD; septum site-determining protein MinD D YP_1919 minE; cell division topological specificity factor K03608 minE; cell division topological specificity factor D YP_pCRY27 parA; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein D YP_pCD74 sopA; putative plasmid partitioning transcription repressor K03496 parA; chromosome partitioning protein D YP_pMT113 parA; putative partitioning protein A K03496 parA; chromosome partitioning protein D YP_pMT097 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YP_pMT112 parB; putative partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YP_pCD75 sopB; putative plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:ypm04147] D YP_0811 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG D YP_0310 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D YP_1957 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D YP_3519 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D YP_2180 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40] D YP_1907 pykA; pyruvate kinase II K00873 PK; pyruvate kinase [EC:2.7.1.40] D YP_0169 ppiA; peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8] D YP_0737 ahpC; putative alkyl hydroperoxide reductase subunit c K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D YP_0506 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D YP_3712 dnaK2; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D YP_3080 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D YP_2737 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D YP_3117 tufA; elongation factor Tu K02358 tuf; elongation factor Tu D YP_0202 tufA1; elongation factor Tu K02358 tuf; elongation factor Tu D YP_2243 hit; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D YP_2056 putative membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D YP_3645 fAA1; putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YP_1917 fadD; long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D YP_0812 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D YP_3382 apt2; putative phosphoribosyl transferase protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D YP_0806 apt1; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D YP_3125 argH; putative argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D YP_1458 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D YP_0943 dcd1; putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D YP_0563 fbp; fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D YP_1022 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D YP_3304 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D YP_0094 glpK1; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D YP_0374 glpK2; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D YP_0025 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D YP_3277 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D YP_2083 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D YP_3611 serA2; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YP_1303 serA1; putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D YP_3091 purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D YP_3131 lpd; putative pyridine nucleotide-disulfide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_0268 lpdA; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D YP_1909 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D YP_0089 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D YP_1025 gpmA; phosphoglycerate mutase 1 K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:ypm02048] D YP_2287 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D YP_2286 putative helicases K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D YP_2284 hypothetical protein K19127 csy1; CRISPR-associated protein Csy1 D YP_2283 hypothetical protein K19128 csy2; CRISPR-associated protein Csy2 D YP_2282 hypothetical protein K19129 csy3; CRISPR-associated protein Csy3 D YP_2281 hypothetical protein K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] D YP_0156 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YP_1932 putative methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D YP_pMT105 putative DNA methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D YP_3794 mcrB; GTPase subunit of restriction endonuclease K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D YP_3793 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D YP_3938 hypothetical protein K19048 symE; toxic protein SymE D YP_3582 relE; Plasmid stabilization system protein K06218 relE; mRNA interferase RelE/StbE D YP_3919 relB; putative DNA-damage-inducible protein K07473 dinJ; DNA-damage-inducible protein J D YP_2598 hypothetical protein K18843 hicB; antitoxin HicB D YP_0793 ymoA; modulating protein YmoA (histone-like protein) K05839 hha; haemolysin expression modulating protein D YP_0794 hypothetical protein K19162 tomB; hha toxicity modulator TomB D YP_2137 pspC; phage shock protein C K03973 pspC; phage shock protein C D YP_2138 pspB; phage shock protein B K03970 pspB; phage shock protein B D YP_pCD79 putative plasmid stabilization element ParE K19092 parE1_3_4; toxin ParE1/3/4 D YP_pCD78 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 D YP_1559 Doc; Prophage maintenance system killer protein K07341 doc; death on curing protein D YP_3580 hypothetical protein K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin D YP_3579 hipB4; putative transcriptional regulators K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D YP_0637 hypothetical protein K19334 tabA; biofilm protein TabA D YP_2352 hypothetical protein K19334 tabA; biofilm protein TabA D YP_3624 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D YP_3881 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D YP_2987 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D YP_2983 parE; topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D YP_2609 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D YP_3593 hypothetical protein K19168 cptA; toxin CptA D YP_3594 hypothetical protein K09159 cptB; antitoxin CptB D YP_1941 nifS; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D YP_2558 nifS_2; putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:ypm04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:ypm04090] C 01504 Antimicrobial resistance genes [BR:ypm01504] D YP_3960 mdfA; multidrug translocase K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein D YP_1847 baeS4; putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] D YP_1848 copR; transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR D YP_1763 phoQ; sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3] D YP_1764 phoP; response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP D YP_0600 acrA2; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_0799 acrA3; multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system D YP_0798 acrB2; multidrug efflux protein K18138 acrB; multidrug efflux pump D YP_0601 acrB1; multidrug efflux protein K18138 acrB; multidrug efflux pump D YP_3412 acrF; putative integral membrane efflux protein K18138 acrB; multidrug efflux pump D YP_0602 ibeB; putative outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system D YP_0839 cueR; putative regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D YP_2978 hasF; ABC-transporter outer membrane component K12340 tolC; outer membrane protein D YP_1182 ompC2; putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins [BR:ypm00536] D YP_2305 fhaB1; putative hemolysin K15125 fhaB; filamentous hemagglutinin D YP_2919 fhaB2; putative adhesin K15125 fhaB; filamentous hemagglutinin C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ypm00537] D YP_2083 phoA; alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:ypm03100] D YP_t14 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t67 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t54 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t3 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t46 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D YP_t15 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t63 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t41 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t5 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t6 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D YP_t29 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YP_t35 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YP_t30 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D YP_t48 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YP_t61 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YP_t47 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D YP_t32 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D YP_t24 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YP_t25 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YP_t27 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D YP_t1 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YP_t49 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YP_t60 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D YP_57 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YP_t33 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YP_t8 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YP_t72 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D YP_t64 tRNA-His K14226 tRNA-His; tRNA His D YP_t13 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YP_t55 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YP_t2 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YP_t68 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D YP_t9 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t23 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t12 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t65 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t73 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t31 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D YP_t20 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t42 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t21 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t34 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t19 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D YP_t22 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t26 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t52 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t11 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t50 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t51 tRNA-Met K14230 tRNA-Met; tRNA Met D YP_t7 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D YP_t71 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D YP_t66 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YP_t69 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YP_t16 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D YP_t4 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t18 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t37 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t36 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t28 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D YP_t53 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YP_56 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YP_59 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YP_t17 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D YP_t62 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D YP_58 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D YP_t38 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D YP_t43 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t44 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t45 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t39 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t40 tRNA-Val K14237 tRNA-Val; tRNA Val D YP_t70 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D YP_r1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r4 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r7 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r12 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r16 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r19 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r22 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D YP_r2 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r5 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r8 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r11 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r15 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r18 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r21 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D YP_r3 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r6 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r9 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r10 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r14 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r17 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r20 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_r13 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D YP_s2 ffs; Bacterial small signal recognition particle RNA. similar to Escherichia coli 4.5S RNA, ffs K01983 ffs; SRP RNA D YP_s7 rnpB; similar to RNA component of Escherichia coli RNase P, involved in tRNA and 4.5S RNA-processing K01978 rnpB; M1 RNA D YP_s4 ssrA; similar to Escherichia coli small stable RNA molecule, tmRNA [10Sa RNA] (D12501) K15035 ssrA; transfer-messenger RNA D YP_s5 csrB; similar to Escherichia coli regulatory RNA csrB K18515 csrB; small regulatory RNA CsrB D YP_s1 spf; RNA feature: spf Spot 42 RNA K18527 spf; small regulatory RNA Spot 42 # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D YP_2350 idnO; gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D YP_2991 aRA14; putative aldo/keto reductase family protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D YP_1162 aRA11; putative aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346] D YP_2774 aRA13; putative aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346] D YP_2036 wcaG8; Nucleoside-diphosphate-sugar epimerases K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D YP_1444 gldA; putative dehydrogenase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-] D YP_2605 tas3; putative ion channel protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-] D YP_2317 gutB; putative zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-] D YP_0335 tdh2; putative Zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-] D YP_0464 glcD1; putative oxidoreductase K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29] D YP_2280 tas2; putative oxidoreductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-] D YP_2909 fadH; 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34] D YP_2268 solA; putative sarcosine oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-] D YP_0474 qor1; quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D YP_1784 qor2; putative Zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D YP_2985 mdaB3; putative modulator of drug activity K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D YP_2110 acpD; acyl carrier protein phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D YP_0558 msrA; peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D YP_1958 Conserved domain frequently associated with peptide methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D YP_3908 gst3; putative glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D YP_3884 putative enzymes, related to nitrate reductase K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D YP_0365 cybB1; putative cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17] D YP_0345 mauG; putative cytochrome C peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D YP_2686 bcp; bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D YP_2129 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D YP_2648 putative iron-dependent peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-] D YP_3318 Pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D YP_1950 Pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D YP_2547 hmp2; flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D YP_2308 hcaA11; putative dioxygenase alpha subunit K22443 cntA; carnitine monooxygenase subunit [EC:1.14.13.239] D YP_2307 hmp1; putative dioxygenase beta subunit K22444 cntB; carnitine monooxygenase subunit [EC:1.14.13.239] D YP_1610 ftnA; ferritin K02217 ftnA; ferritin [EC:1.16.3.2] D YP_0276 sufI1; putative exported protein K14588 cueO; cuproxidase [EC:1.16.3.4] D YP_0092 fpr; ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D YP_2692 arsC2; putative oxidoreductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D YP_0630 nrdG2; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D YP_1212 pflA; pyruvate formate lyase activating enzyme 1 K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D YP_1236 hcr; putative oxidoreductase K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-] D YP_0330 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D YP_2176 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D YP_2324 tam; putative trans-aconitate methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144] D YP_1693 tehB; putative tellurite resistance protein K16868 tehB; tellurite methyltransferase [EC:2.1.1.265] D YP_1097 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D YP_0607 putative acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D YP_3985 wecD4; putative acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D YP_0640 wecD2; putative acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D YP_3171 putative exported protein K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5] D YP_1222 aat1; putative leucyl/phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D YP_2928 hypothetical protein K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333] D YP_2293 putative glycosylase K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340] D YP_0660 hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25] D YP_2874 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D YP_0699 apbE; thiamine biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D YP_0906 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D YP_2197 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D YP_2968 glnE; adenylylating enzyme for glutamine synthetase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D YP_3086 aceK; isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-] D YP_1036 fcbC2; putative thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D YP_2008 trpH; PHP domain K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D YP_2416 sixA; putative phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D YP_1315 rtn1; putative membrane protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52] D YP_3359 rtn4; putative membrane protein K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52] D YP_3538 aslA2; putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-] D YP_3526 aslA1; putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-] D YP_3510 endA; endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1] D YP_3747 tatD4; putative metalloenzyme K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D YP_2247 tatD1; putative deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D YP_pCRY24 micrococcal nuclease-like protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D YP_1077 mhpC1; putative hydrolases or acyltransferases (alpha/beta hydrolase superfamily) K01175 ybfF; esterase [EC:3.1.-.-] D YP_0709 hydrolase of the alpha/beta superfamily K11750 frsA; esterase FrsA [EC:3.1.-.-] D YP_3550 putative galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89] D YP_1812 ampD3; putative N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D YP_0240 def; polypeptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D YP_1461 cDA11; putative polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D YP_2484 hypothetical protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105] D YP_1615 hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135] D YP_3844 tdcF5; Putative translation initiation inhibitor K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D YP_2967 hypothetical protein K18446 ygiF; triphosphatase [EC:3.6.1.25] D YP_0783 cof1; putative haloacid dehalogenase-like hydrolase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-] D YP_2658 mutT5; NTP pyrophosphohydrolases including oxidative damage repair enzymes K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-] D YP_2261 maf2; Nucleotide-binding protein implicated in inhibition of septum formation K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-] D YP_0005 MoxR-like ATPases K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D YP_0905 araD2; putative class II aldolase-family protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D YP_2031 mipB; putative transaldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-] D YP_0524 putative sugar kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D YP_2832 putative exported protein K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21] D YP_2823 csdB2; putative aminotransferase class V K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-] D YP_1535 putative exported protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24] D YP_0481 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D YP_0903 hfi1; Hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D YP_0564 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45] D YP_2040 nqrB2; putative integral membrane protein K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D YP_2042 nqrA2; putative iron-sulfur binding NADH dehydrogenase K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D YP_2043 putative iron-sulfur protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D YP_0693 nqrA1; NADH-ubiquinone oxidoreductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1] D YP_0694 nqrB1; NADH-ubiquinone oxidoreductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1] D YP_0695 nqrC1; Na+-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] D YP_0696 nqrD1; Na+-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1] D YP_0697 nqrE1; Na+-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D YP_1677 nqrE2; putative oxidoreductase K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1] D YP_0698 nqrF; NADH-uniquinone oxidoreductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1] D YP_3228 zntA2; putative P-type cation-translocating membrane ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D YP_1791 mgtB; Mg(2+) transport ATPase protein B K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism D YP_0289 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D YP_3971 fdhD; putative formate dehydrogenase K02379 fdhD; FdhD protein D YP_2564 fdx2; putative [4Fe-4S] ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D YP_0925 fdx1; adrenodoxin family ferredoxin K11107 yfaE; ferredoxin D YP_2039 nqrC2; putative exported protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D YP_2038 nqrD2; putative membrane protein K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D YP_2044 nqrE3; putative membrane protein K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D YP_0497 hydN; 4Fe-4S ferrodoxin K05796 hydN; electron transport protein HydN D YP_0001 fldA1; putative flavoprotein K06205 mioC; MioC protein D YP_3589 fldB; flavodoxin 2 K03840 fldB; flavodoxin II D YP_2559 nifU; NifU family protein K04488 iscU; nitrogen fixation protein NifU and related proteins D YP_3850 putative cytochrome K15536 cybC; soluble cytochrome b562 D YP_0366 cybC; putative cytochrome B562 K15536 cybC; soluble cytochrome b562 D YP_2662 napD; assembly protein for periplasmic nitrate reductase K02570 napD; periplasmic nitrate reductase NapD D YP_2663 napF3; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF D YP_1080 fldA2; flavodoxin 1 K03839 fldA; flavodoxin I D YP_2659 napC; cytochrome C-type protein NapC K02569 napC; cytochrome c-type protein NapC C 99983 Lipid metabolism D YP_0538 aidB; putative acyl-CoA dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism D YP_2452 nrdI; NrdI protein K03647 nrdI; protein involved in ribonucleotide reduction C 99985 Amino acid metabolism D YP_2616 cysZ; putative membrane protein K06203 cysZ; CysZ protein D YP_2789 gloA2; Lactoylglutathione lyase and related lyases K08234 yaeR; glyoxylase I family protein D YP_2127 putative carboxypeptidase K14054 mpaA; murein peptide amidase A D YP_3501 putative enzyme with a TIM-barrel fold K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D YP_2023 putative membrane protein K08992 lapA; lipopolysaccharide assembly protein A D YP_2024 putative N-acetylglucosaminyl transferase K19804 lapB; lipopolysaccharide assembly protein B D YP_1211 hypothetical protein K07270 K07270; glycosyl transferase, family 25 C 99987 Cofactor metabolism D YP_3194 hemY2; putative protoheme IX biogenesis protein K02498 hemY; HemY protein D YP_3270 aarF; ubiquinone biosynthesis protein K03688 ubiB; ubiquinone biosynthesis protein D YP_3269 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ D YP_2971 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK D YP_0606 Putative lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D YP_0013 mobB; putative molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein D YP_3420 abgT; putative integral membrane efflux protein K12942 abgT; aminobenzoyl-glutamate transport protein C 99988 Secondary metabolism D YP_2989 sufI2; putative cell division protein K04753 sufI; suppressor of ftsI C 99999 Others D YP_2887 putative membrane protein K15977 K15977; putative oxidoreductase D YP_0659 Acyl-CoA synthetase (NDP forming) K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D YP_3854 putative ribonuclease inhibitor K03623 yhcO; ribonuclease inhibitor D YP_3904 cspI; cold shock-like protein K03704 cspA; cold shock protein D YP_1486 cspC2; cold shock protein K03704 cspA; cold shock protein D YP_1786 cspC3; cold shock protein K03704 cspA; cold shock protein D YP_1120 cspE1; putative cold shock protein K03704 cspA; cold shock protein D YP_1195 cspE2; cold shock protein K03704 cspA; cold shock protein D YP_1228 cspD; cold shock-like protein K03704 cspA; cold shock protein D YP_2460 cspB; cold shock protein K03704 cspA; cold shock protein D YP_3903 cspa1; major cold shock protein Cspa1 K03704 cspA; cold shock protein D YP_3100 rsd; regulator of sigma D K07740 rsd; regulator of sigma D D YP_0788 glnK; nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2 D YP_0135 putative RNA binding protein, Contains S1 domain K06959 tex; protein Tex C 99974 Translation C 99975 Protein processing D YP_2116 hslJ; putative heat shock protein K03668 hslJ; heat shock protein HslJ D YP_1226 hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D YP_0773 tig; Trigger factor K03545 tig; trigger factor D YP_3885 putative membrane protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit D YP_3967 fdhE; putative formate dehydrogenase formation protein K02380 fdhE; FdhE protein D YP_2469 ureE; urease accessory protein K03187 ureE; urease accessory protein D YP_2470 ureF; urease accessory protein K03188 ureF; urease accessory protein D YP_2471 ureG; urease accessory protein K03189 ureG; urease accessory protein D YP_1055 smpB; small protein B K03664 smpB; SsrA-binding protein D YP_2453 nrdH; putative glutaredoxin K06191 nrdH; glutaredoxin-like protein NrdH D YP_3146 putative magnesium chelatase family protein K07391 comM; magnesium chelatase family protein D YP_2947 putative protein-disulfide isomerase K07396 K07396; putative protein-disulfide isomerase D YP_2856 putative protein-disulfide isomerase K07396 K07396; putative protein-disulfide isomerase D YP_0175 putative redox protein, regulator of disulfide bond formation K07397 yhfA; putative redox protein D YP_0128 Thioredoxin-like proteins and domains K07400 nfuA; Fe/S biogenesis protein NfuA D YP_0412 putative type III secretion apparatus K18984 ssaE; secretion system chaperone SsaE C 99976 Replication and repair D YP_0792 putative 6-O-methylguanine DNA methyltransferase family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D YP_2819 xni; exodeoxyribonuclease IX K01146 xni; protein Xni D YP_0050 radC; putative DNA repair protein K03630 radC; DNA repair protein RadC D YP_3267 rumC; putative DNA recombination protein K09760 rmuC; DNA recombination protein RmuC D YP_1233 putative ATP-dependent endonuclease of the OLD family K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D YP_3803 putative endonuclease distantly related to archaeal Holliday junction resolvase K07460 yraN; putative endonuclease D YP_0608 putative endonuclease containing a URI domain K07461 K07461; putative endonuclease D YP_0241 smf; putative Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 smf; DNA processing protein D YP_2957 hypothetical protein K07474 xtmA; phage terminase small subunit D YP_1215 putative ATPase protein K07478 ycaJ; putative ATPase D YP_0243 topA1; putative DNA topoisomerase K07479 yrdD; putative DNA topoisomerase D YP_3578 putative primase K06919 K06919; putative DNA primase/helicase D YP_3478 insB; putative transposase K07480 insB; insertion element IS1 protein InsB D YP_pCD71 hypothetical protein K07483 K07483; transposase D YP_0121 insertion element IS1661 DNA-binding protein K07483 K07483; transposase D YP_pCD98 hypothetical protein K07483 K07483; transposase D YP_3408 putative transposase K07483 K07483; transposase D YP_0591 insertion element IS1661 DNA-binding protein K07483 K07483; transposase D YP_3120 insertion element IS1661 DNA-binding protein K07483 K07483; transposase D YP_3063 insertion element IS1661 DNA-binding protein K07483 K07483; transposase D YP_3958 insertion element IS1661 DNA-binding protein K07483 K07483; transposase D YP_3999 DNA-bding protein of IS 1661 K07483 K07483; transposase D YP_pCD10 hypothetical protein K07484 K07484; transposase D YP_pCD16 hypothetical protein K07484 K07484; transposase D YP_pMT125 probable transposase K07486 K07486; transposase D YP_3472 insertion sequence protein K07489 K07489; transposase D YP_3477 insA2; insertion sequence protein K07489 K07489; transposase D YP_3458 insA1; insertion element protein K07489 K07489; transposase D YP_3010 tnp_34; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3193 tnp_35; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3239 tnp_36; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3331 tnp_37; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3517 tnp_38; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3641 tnp_40; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3648 tnp_41; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3700 tnp_42; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3822 tnp_43; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3905 tnp_44; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0019 tnp_1; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2245 tnp_24; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2252 tnp_25; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2527 tnp_26; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2621 tnp_28; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2682 tnp_29; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2694 tnp_30; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2735 tnp_31; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2815 tnp_32; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2903 tnp_33; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0098 tnp_2; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0203 tnp_3; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0269 tnp_5; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0744 v1; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0753 tnp_7; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0853 tnp_8; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0878 tnp_9; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0965 tnp_10; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0995 tnp_12; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_1056 tnp_13; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_1168 tnp_14; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_1187 tnp_15; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_1224 tnp_16; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_1325 tnp_17; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2098 tnp_20; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2130 tnp_21; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2182 tnp_23; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_1877 putative transposase K07491 rayT; REP-associated tyrosine transposase D YP_0987 tnp_11; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0651 tnp_6; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0548 tnp; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0251 tnp_4; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2540 tnp_27; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_2141 tnp_22; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_3525 tnp_39; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_pMT043 tnp; putative transposase K07491 rayT; REP-associated tyrosine transposase D YP_1599 tnp_19; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_1410 tnp_18; transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase D YP_0968 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_1156 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_1383 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_1701 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_1752 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_1802 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_1815 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_1835 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_1939 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_1993 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_2234 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_2267 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_2436 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_2569 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_2754 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_2853 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_2956 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_3495 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_pMT126 transposase K07493 K07493; putative transposase D YP_0012 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_2728 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_3931 transposase for the IS285 insertion element K07493 K07493; putative transposase D YP_2457 tnpA_3; putative transposase for IS285 element K07493 K07493; putative transposase D YP_0248 tra5B; putative transposase K07497 K07497; putative transposase D YP_0247 putative transposase K07497 K07497; putative transposase D YP_pCD20 ORFA; putative transposase ORFA K07497 K07497; putative transposase D YP_pCD88 putative transposase K07497 K07497; putative transposase D YP_1074 trp1400A; IS1400 transposase A K07497 K07497; putative transposase D YP_pCD83 IS1222-like transposase K07497 K07497; putative transposase D YP_pCD89 putative transposase K07497 K07497; putative transposase D YP_pCD72 hypothetical protein K07497 K07497; putative transposase D YP_pCD18 ORFC; putative transposase K07497 K07497; putative transposase D YP_1856 tra5D; putative integrase core domain protein K07497 K07497; putative transposase D YP_pCD15 putative transposase protein K07497 K07497; putative transposase D YP_3959 tra5H; transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YP_4000 tra5I; transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YP_0592 tra5C; transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YP_3064 tra5E; transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YP_3119 tra5F; transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YP_3409 tra5G; transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YP_pCD03 hypothetical protein K07497 K07497; putative transposase D YP_0120 tra5A; transposase for insertion sequence IS1661 K07497 K07497; putative transposase D YP_1519 tnpA_2; putative transposase K07497 K07497; putative transposase D YP_pCD04 possible transposase K07497 K07497; putative transposase D YP_pCD19 ORFB; putative transposase K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D YP_2139 pspA; phage shock protein A K03969 pspA; phage shock protein A D YP_2136 pspD; phage shock protein K03971 pspD; phage shock protein D D YP_0808 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D YP_3191 ansP3; putative permease protein K03293 TC.AAT; amino acid transporter, AAT family D YP_2309 betT2; putative quarternary ammonium transport protein K03451 TC.BCT; betaine/carnitine transporter, BCCT family D YP_2150 pTR2; putative proton dependent peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D YP_2627 putP4; putative permease K03307 TC.SSS; solute:Na+ symporter, SSS family D YP_0730 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D YP_2766 fUI1; putative permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family D YP_3746 nupC2; putative Na+ dependent nucleosidetransporter-family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family D YP_0083 citT1; putative membrane transport protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family D YP_3992 putative membrane protein K07085 K07085; putative transport protein D YP_1266 TrkA, Potassium channel-family protein K07085 K07085; putative transport protein C 99978 Cell growth D YP_1995 ispZ; putative intracellular septation protein K06190 ispZ; intracellular septation protein D YP_3225 putative lipoprotein K27311 dcrB; inner membrane lipoprotein DcrB D YP_0552 Regulator of cell morphogenesis and NO signaling K07322 ytfE; regulator of cell morphogenesis and NO signaling D YP_1947 spoVR; SpoVR family protein K06415 spoVR; stage V sporulation protein R D YP_0063 nlpD1; putative membrane protein K22719 envC; murein hydrolase activator C 99993 Cell motility D YP_2241 flgN2; putative lipoprotein K07337 K07337; penicillin-binding protein activator D YP_1328 tfoX; Regulator of competence-specific genes K07343 tfoX; DNA transformation protein and related proteins D YP_2571 ecpD2; putative pili chaperone protein K15540 ecpD; chaperone protein EcpD D YP_1733 ecpD1; putative chaperone protein K15540 ecpD; chaperone protein EcpD D YP_2816 syd; syd protein K15723 syd; SecY interacting protein Syd C 99995 Signaling proteins D YP_0262 ampE; putative membrane-bound sensory transducer in beta-lactamase regulation K03807 ampE; AmpE protein D YP_0453 terA; putative tellurite resistance protein K05792 terA; tellurite resistance protein TerA D YP_0456 terD; putative tellurium resistance protein K05795 terD; tellurium resistance protein TerD D YP_0457 terE; tellurium resistance protein K05795 terD; tellurium resistance protein TerD D YP_0452 terZ; tellurium resistance protein K05791 terZ; tellurium resistance protein TerZ D YP_1729 proQ; ProP effector K03607 proQ; ProP effector D YP_3333 uspA2; universal stress protein A K06149 uspA; universal stress protein A D YP_2086 uspA1; putative stress protein K14055 uspE; universal stress protein E D YP_3265 cstA2; putative carbon starvation protein K06200 cstA; carbon starvation protein D YP_2033 cstA1; carbon starvation protein K06200 cstA; carbon starvation protein D YP_0027 bipA; putative GTPase K06207 typA; GTP-binding protein D YP_1702 phoH2; putative phosphate starvation-inducible protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D YP_1094 phoH1; Phosphate starvation-inducible protein PhoH, predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D YP_1954 prkA; Putative Ser protein kinase K07180 prkA; serine protein kinase D YP_2966 putative exported protein K07184 ygiM; SH3 domain protein D YP_3741 smp; putative membrane protein K07186 smp; membrane protein D YP_0761 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D YP_1216 lolA; putative outer-membrane lipoproteins carrier protein K03634 lolA; outer membrane lipoprotein carrier protein D YP_1863 lolB; putative lipoprotein K02494 lolB; outer membrane lipoprotein LolB D YP_2421 vacJ; lipoprotein precursor K04754 mlaA; phospholipid-binding lipoprotein MlaA D YP_3180 wzzE; putative lipopolysaccharide biosynthesis protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE D YP_2159 slyB; putative lipoprotein K06077 slyB; outer membrane lipoprotein SlyB D YP_3901 pcp2; outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB D YP_2797 hlpA; cationic 19 kDa outer membrane protein precursor K06142 hlpA; outer membrane protein D YP_0331 nlpD2; lipoprotein K06194 nlpD; lipoprotein NlpD D YP_0594 nlpI; lipoprotein NlpI K05803 nlpI; lipoprotein NlpI D YP_1999 ompW; putative exported protein K07275 ompW; outer membrane protein D YP_0395 Putative salt-induced outer membrane protein K07283 ydiY; putative salt-induced outer membrane protein D YP_1916 slp; putative outer membrane protein K07285 slp; outer membrane lipoprotein D YP_0770 putative lipoprotein K07286 yajG; uncharacterized lipoprotein D YP_1415 asmA1; putative exported protein K07289 asmA; AsmA protein D YP_3350 asmA2; Uncharacterized protein involved in outer membrane biogenesis K07290 yhjG; AsmA family protein D YP_0840 putative membrane protein K07340 ybbJ; inner membrane protein D YP_1388 acrA6; putative exported protein K02005 ABC.CD.TX; HlyD family secretion protein D YP_2270 perM2; putative membrane protein K11744 tqsA; AI-2 transport protein TqsA D YP_3590 creD; putative membrane protein K06143 creD; inner membrane protein D YP_2426 ccmE; putative cytochrome c-type biogenesis protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE D YP_2423 ccmH; putative cytochrome c-type biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH D YP_2746 putative DNA-binding protein K15539 rodZ; cytoskeleton protein RodZ D YP_3859 putative membrane protein K21695 aaeX; protein AaeX D YP_2910 hdeD; putative membrane protein K21908 hdeD; membrane protein HdeD C 99994 Others D YP_4020 phoU; negative regulator for pho regulon K02039 phoU; phosphate transport system protein D YP_0204 bfd; putative bacterioferritin-associated ferredoxin K02192 bfd; bacterioferritin-associated ferredoxin D YP_0454 terB; tellurite resistance protein K05793 terB; tellurite resistance protein TerB D YP_0455 terC1; tellurium resistance protein K05794 terC; tellurite resistance protein TerC D YP_0500 cutA; putative cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D YP_1891 cutC; putative copper homeostasis protein K06201 cutC; copper homeostasis protein D YP_0623 phnK; phosphonates transport ATP-binding protein K05781 phnK; putative phosphonate transport system ATP-binding protein D YP_3688 apaG; ApaG protein K06195 apaG; ApaG protein D YP_3200 cyaY; frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY D YP_0437 hmuS; hemin transport protein K07225 hmuS; putative hemin transport protein D YP_0441 Putative heme iron utilization protein K07227 chuX; heme iron utilization protein D YP_0801 dsrE2; conserved hypothetical protein involved in intracellular sulfur reduction K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur B B 09194 Poorly characterized C 99996 General function prediction only D YP_2393 cvpA; putative colicin V production protein K03558 cvpA; membrane protein required for colicin V production D YP_1172 pqiB1; paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B D YP_1885 mviM3; putative oxidoreductase K03810 mviM; virulence factor D YP_0657 putative lipoprotein K05811 yfiM; putative lipoprotein D YP_3750 osmY2; osmotically inducible protein Y K04065 osmY; hyperosmotically inducible periplasmic protein D YP_1880 hIS2; Histidinol phosphatase and related hydrolases of the PHP family K04477 ycdX; putative hydrolase D YP_2509 Acid-induced glycyl radical enzyme K06866 grcA; autonomous glycyl radical cofactor D YP_0298 iscA1; iron-sulfur cluster insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein D YP_2191 iscA2; iron-sulfur cluster assembly scaffold protein K05997 sufA; Fe-S cluster assembly protein SufA D YP_2190 putative membrane components of an uncharacterized iron-regulated ABC-type transporter SufB K09014 sufB; Fe-S cluster assembly protein SufB D YP_2188 putative membrane components of an uncharacterized iron-regulated ABC-type transporter SufB K09015 sufD; Fe-S cluster assembly protein SufD D YP_2668 putative membrane protein K07038 K07038; inner membrane protein D YP_1742 putative membrane protein K07038 K07038; inner membrane protein D YP_0029 rbn1; ribonuclease BN K07058 K07058; membrane protein D YP_3348 rbn2; putative membrane protein K07058 K07058; membrane protein D YP_0504 fxsA; putative membrane protein K07113 fxsA; UPF0716 protein FxsA D YP_2186 SufE protein K02426 sufE; cysteine desulfuration protein SufE D YP_2824 SufE protein K02426 sufE; cysteine desulfuration protein SufE D YP_2271 putative enzyme related to sulfurtransferases K07146 K07146; UPF0176 protein D YP_1767 Uncharacterized protein involved in purine metabolism K07153 hflD; high frequency lysogenization protein D YP_1417 ysuF; putative ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF D YP_2432 lemA; putative exported protein K03744 lemA; LemA protein D YP_0193 slyX; phage lysis protein K03745 slyX; SlyX protein D YP_0242 hypothetical protein K03747 smg; Smg protein D YP_3726 creA; putative exported protein K05805 creA; CreA protein D YP_3511 sprT; hypothetical protein K02742 sprT; SprT protein D YP_2394 dedD; putative membrane protein K03749 dedD; DedD protein D YP_0155 damX; conserved hypothetical membrane protein K03112 damX; DamX protein D YP_1400 sanA; putative exported protein K03748 sanA; SanA protein D YP_2397 dedA1; putative membrane protein K03975 dedA; membrane-associated protein D YP_1173 pqiA1; putative paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A D YP_1727 pqiA2; putative membrane protein K03808 pqiA; paraquat-inducible protein A D YP_2341 elaB; putative membrane protein K05594 elaB; ElaB protein D YP_2134 putative membrane protein K08990 ycjF; putative membrane protein D YP_3232 putative membrane protein K08993 yhhL; putative membrane protein D YP_1140 putative membrane protein K08996 yagU; putative membrane protein D YP_1971 hypothetical protein K09858 K09858; SEC-C motif domain protein D YP_0791 putative lipoprotein K09914 K09914; putative lipoprotein D YP_3072 malM; maltose operon periplasmic protein K05775 malM; maltose operon periplasmic protein D YP_3079 putative membrane protein K13256 psiE; protein PsiE D YP_2434 phnA; putative Zn-ribbon-containing protein involved in phosphonate metabolism K06193 phnA; protein PhnA C 99997 Function unknown D YP_3413 senA; enterotoxin-like protein K06867 K06867; uncharacterized protein D YP_2511 yplB; putative phospholipase A accessory protein K06867 K06867; uncharacterized protein D YP_0348 hypothetical protein K06867 K06867; uncharacterized protein D YP_1386 aslB1; putative heme-binding protein K06871 K06871; uncharacterized protein D YP_3537 aslB2; putative regulatory protein K06871 K06871; uncharacterized protein D YP_2588 hcp5; Hemolysin-coregulated protein (uncharacterized) K06887 K06887; uncharacterized protein D YP_1520 hcp4; Hemolysin-coregulated protein (uncharacterized) K06887 K06887; uncharacterized protein D YP_1150 hcp1; putative membrane protein K06887 K06887; uncharacterized protein D YP_2734 hcp6; Hemolysin-coregulated protein (uncharacterized) K06887 K06887; uncharacterized protein D YP_0883 hypothetical protein K06887 K06887; uncharacterized protein D YP_0540 hydrolase of the alpha/beta superfamily K06889 K06889; uncharacterized protein D YP_1849 hydrolase of the alpha/beta superfamily K06889 K06889; uncharacterized protein D YP_0996 putative membrane protein K06890 K06890; uncharacterized protein D YP_1512 phage-related protein K06903 W; Bacteriophage baseplate protein W D YP_2135 putative ATPase K06918 K06918; uncharacterized protein D YP_pMT109 putative DNA-binding protein K06921 K06921; uncharacterized protein D YP_1334 putative CoA-binding protein K06929 K06929; uncharacterized protein D YP_2162 putative Fe-S protein K06938 K06938; uncharacterized protein D YP_1741 putative transport protein K06956 K06956; uncharacterized protein D YP_2982 putative esterase K07000 K07000; uncharacterized protein D YP_2238 putative esterase K07000 K07000; uncharacterized protein D YP_0881 putative membrane protein K07014 K07014; uncharacterized protein D YP_0179 putative hydrolase of the alpha/beta-hydrolase fold K07019 K07019; uncharacterized protein D YP_3713 putative membrane protein K07034 K07034; uncharacterized protein D YP_2680 putative membrane protein K07054 K07054; uncharacterized protein D YP_0190 putative nucleic-acid-binding protein containing a Zn-ribbon domain K07070 K07070; uncharacterized protein D YP_2386 putative nucleoside-diphosphate sugar epimerases (SulA family) K07071 K07071; uncharacterized protein D YP_2410 putative membrane protein K07090 K07090; uncharacterized protein D YP_2384 putative phosphoesterase K07095 K07095; uncharacterized protein D YP_0555 putative exported protein K07109 K07109; uncharacterized protein D YP_0429 putative integral membrane protein K07112 K07112; uncharacterized protein D YP_3802 lppC; putative glycosylase K07121 K07121; uncharacterized protein D YP_1836 putative exported protein K07126 K07126; uncharacterized protein D YP_pMT028 hypothetical protein K07128 K07128; uncharacterized protein D YP_pMT030 putative ABC transporter ATP-binding protein K07128 K07128; uncharacterized protein D YP_1894 putative membrane protein K07136 K07136; uncharacterized protein D YP_3810 putative Fe-S oxidoreductases K07139 K07139; uncharacterized protein D YP_1176 putative iron-sulfur binding protein K07140 K07140; MOSC domain-containing protein D YP_1396 putative exported protein K07148 K07148; uncharacterized protein D YP_3498 hypothetical protein K09131 K09131; uncharacterized protein D YP_1113 hypothetical protein K09158 K09158; uncharacterized protein D YP_1926 hypothetical protein K09160 K09160; uncharacterized protein D YP_2374 hypothetical protein K09161 K09161; uncharacterized protein D YP_2656 hypothetical protein K09768 K09768; uncharacterized protein D YP_1991 hypothetical protein K09780 K09780; uncharacterized protein D YP_1953 hypothetical protein K09786 K09786; uncharacterized protein D YP_0805 putative phage protein K09790 K09790; uncharacterized protein D YP_1194 hypothetical protein K09791 K09791; uncharacterized protein D YP_1053 hypothetical protein K09801 K09801; uncharacterized protein D YP_1448 hypothetical protein K09802 K09802; uncharacterized protein D YP_1510 hypothetical protein K09803 K09803; uncharacterized protein D YP_3614 putative exported protein K09807 K09807; uncharacterized protein D YP_1232 virK; putative virulence factor K09824 virK; uncharacterized protein D YP_0700 putative exported protein K05952 K05952; uncharacterized protein D YP_1171 putative lipoprotein K09857 K09857; uncharacterized protein D YP_3720 hypothetical protein K09861 K09861; uncharacterized protein D YP_0252 hypothetical protein K09862 K09862; uncharacterized protein D YP_3095 hypothetical protein K09891 K09891; uncharacterized protein D YP_0021 hypothetical protein K09894 K09894; uncharacterized protein D YP_3608 putative exported protein K09895 K09895; uncharacterized protein D YP_0015 hypothetical protein K09896 K09896; uncharacterized protein D YP_3145 hypothetical protein K09897 K09897; uncharacterized protein D YP_0178 hypothetical protein K09898 K09898; uncharacterized protein D YP_2375 hypothetical protein K09899 K09899; uncharacterized protein D YP_1985 hypothetical protein K09901 K09901; uncharacterized protein D YP_1923 hypothetical protein K09902 K09902; uncharacterized protein D YP_0880 hypothetical protein K09904 K09904; uncharacterized protein D YP_1890 hypothetical protein K09907 K09907; uncharacterized protein D YP_3820 putative membrane protein K09908 K09908; uncharacterized protein D YP_1333 putative exported protein K09909 K09909; uncharacterized protein D YP_0271 hypothetical protein K09910 K09910; uncharacterized protein D YP_0877 putative dehydrogenase K09911 K09911; uncharacterized protein D YP_1463 hypothetical protein K09912 K09912; uncharacterized protein D YP_1959 hypothetical protein K09916 K09916; uncharacterized protein D YP_1619 hypothetical protein K09917 K09917; uncharacterized protein D YP_1616 hypothetical protein K09918 K09918; uncharacterized protein D YP_2980 hypothetical protein K09920 K09920; uncharacterized protein D YP_3203 hypothetical protein K09921 K09921; uncharacterized protein D YP_3491 hypothetical protein K09923 K09923; uncharacterized protein D YP_0533 putative membrane protein K09937 K09937; uncharacterized protein D YP_2720 hypothetical protein K09946 K09946; uncharacterized protein D YP_2613 hypothetical protein K09954 K09954; uncharacterized protein D YP_2610 hypothetical protein K09962 K09962; uncharacterized protein D YP_0837 hypothetical protein K09973 K09973; uncharacterized protein D YP_1825 hypothetical protein K09975 K09975; uncharacterized protein D YP_2113 putative exported protein K09978 K09978; uncharacterized protein D YP_0616 hypothetical protein K09979 K09979; uncharacterized protein D YP_1990 hypothetical protein K09981 K09981; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024