+E Transcription factors KO #

  Transcription Factors - Yersinia pestis Shasta

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BZ15_1283 helix-turn-helix domain protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D BZ15_3239 helix-turn-helix domain protein K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D BZ15_3240 helix-turn-helix domain protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D BZ15_852 chbR; HTH-type transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D BZ15_1632 helix-turn-helix domain protein K05372 ybtA; AraC family transcriptional regulator D BZ15_3117 helix-turn-helix domain protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D BZ15_4404 helix-turn-helix domain protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D BZ15_3497 methylated-DNA--[]-cysteine S-methyltransferase family protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D BZ15_2541 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BZ15_3822 bacterial regulatory helix-turn-helix, lysR family protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D BZ15_3926 bacterial regulatory helix-turn-helix, lysR family protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D BZ15_3098 nhaR; transcriptional activator protein nhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D BZ15_3791 bacterial regulatory helix-turn-helix, lysR family protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BZ15_2660 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D BZ15_3034 bacterial regulatory helix-turn-helix, lysR family protein K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D BZ15_1321 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D BZ15_1036 dmlR; HTH-type transcriptional regulator DmlR K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D BZ15_3484 bacterial regulatory helix-turn-helix, lysR family protein K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D BZ15_4127 bacterial regulatory helix-turn-helix, lysR family protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D BZ15_3807 bacterial regulatory helix-turn-helix, lysR family protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D BZ15_2232 deoR-like helix-turn-helix domain protein K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D BZ15_3448 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D BZ15_2745 deoR-like helix-turn-helix domain protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D BZ15_196 deoR-like helix-turn-helix domain protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator C LacI family D BZ15_2726 bacterial regulatory s, lacI family protein K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D BZ15_1821 rafR; HTH-type transcriptional regulator rafR K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BZ15_1035 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BZ15_2778 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BZ15_2817 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BZ15_3671 helix-turn-helix domain protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BZ15_1242 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BZ15_2965 bacterial regulatory s, lacI family protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BZ15_3460 bacterial regulatory s, lacI family protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BZ15_3030 fruR; fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D BZ15_4142 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D BZ15_1139 bacterial regulatory s, lacI family protein K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D BZ15_3749 gntR; HTH-type transcriptional regulator gntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D BZ15_999 idnR; HTH-type transcriptional regulator idnR K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator C GntR family D BZ15_65 phnF; phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BZ15_1568 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BZ15_1655 UTRA domain protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D BZ15_1394 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D BZ15_102 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BZ15_2273 bacterial regulatory s, gntR family protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D BZ15_2997 bacterial regulatory s, gntR family protein K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D BZ15_685 aminotransferase class I and II family protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D BZ15_2390 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D BZ15_397 acrR; HTH-type transcriptional regulator AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D BZ15_3522 slmA; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator D BZ15_1149 nemR; HTH-type transcriptional repressor nemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D BZ15_3793 fabR; HTH-type transcriptional repressor fabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D BZ15_3570 asnC; regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D BZ15_1900 asnC-type helix-turn-helix domain protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BZ15_2179 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BZ15_382 asnC-type helix-turn-helix domain protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D BZ15_1073 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D BZ15_2589 bacterial regulatory s, luxR family protein K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D BZ15_3445 malT; HTH-type transcriptional regulator malT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D BZ15_1153 winged helix DNA-binding domain protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D BZ15_269 winged helix DNA-binding domain protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D BZ15_443 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BZ15_3336 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D BZ15_899 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BZ15_3257 ferric uptake regulator family protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D BZ15_4012 iclR; acetate operon repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D BZ15_1835 kdgR; pectin degradation repressor protein kdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D BZ15_3396 bacterial regulatory s, crp family protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BZ15_1225 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D BZ15_632 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D BZ15_3192 nsrR; HTH-type transcriptional repressor nsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D BZ15_177 bacterial regulatory, arsR family protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D BZ15_1472 SIS domain protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D BZ15_3963 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BZ15_4096 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BZ15_3118 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D BZ15_739 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator D BZ15_5 winged helix-turn-helix DNA-binding family protein K07724 ner; Ner family transcriptional regulator D BZ15_3046 bacterial extracellular solute-binding s, 5 Middle family protein K11925 sgrR; SgrR family transcriptional regulator D BZ15_3128 nadR; trifunctional NAD biosynthesis/regulator protein NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D BZ15_2695 mqsA; antitoxin MqsA K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D BZ15_3727 sugar diacid recognition family protein K02647 cdaR; carbohydrate diacid regulator D BZ15_2415 ModE molybdate transport repressor domain protein K02019 modE; molybdate transport system regulatory protein D BZ15_3679 hth; helix-turn-helix XRE family protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D BZ15_3455 met Apo-repressor, MetJ family protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D BZ15_1699 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D BZ15_368 bolA; protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D BZ15_4291 parB-like nuclease domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BZ15_4282 ParB/RepB/Spo0J family partition domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BZ15_4369 sopB; protein sopB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BZ15_3946 rfaH; transcription elongation factor/antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH D BZ15_3 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D BZ15_908 marR family protein K02565 nagC; N-acetylglucosamine repressor D BZ15_1273 mlc; protein mlc K15545 mlc; transcriptional regulator of PTS gene D BZ15_3635 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor D BZ15_1183 tyrR; transcriptional regulatory protein tyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D BZ15_465 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D BZ15_1174 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D BZ15_1177 pspC; phage shock protein C K03973 pspC; phage shock protein C D BZ15_3157 lsrR; transcriptional regulator lsrR K11531 lsrR; lsr operon transcriptional repressor D BZ15_4139 hypothetical protein K06140 rnk; regulator of nucleoside diphosphate kinase D BZ15_1641 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D BZ15_2468 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D BZ15_2698 prophage CP4-57 regulatory family protein K07733 alpA; prophage regulatory protein D BZ15_2639 hypothetical protein K07735 algH; putative transcriptional regulator D BZ15_125 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BZ15_345 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D BZ15_310 crl; sigma factor-binding protein crl K11926 crl; sigma factor-binding protein Crl D BZ15_3028 mraZ family protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 5, 2024 #
Classification taken and modified from TRANSFAC 7.0