09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
09124 Replication and repair
03030 DNA replication [PATH:edj03030]
ECDH1ME8569_1788 holE; DNA polymerase III theta subunit ECDH1ME8569_0203 dnaQ; DNA polymerase III subunit epsilon ECDH1ME8569_0177 dnaE; DNA polymerase III subunit alpha ECDH1ME8569_0454 dnaX; DNA polymerase III subunits gamma and tau ECDH1ME8569_1034 holB; DNA polymerase III subunit delta' ECDH1ME8569_0609 holA; DNA polymerase III subunit delta ECDH1ME8569_4227 holD; DNA polymerase III subunit psi ECDH1ME8569_4113 holC; DNA polymerase III subunit chi ECDH1ME8569_3588 dnaN; DNA polymerase III subunit beta ECDH1ME8569_3909 dnaB; replicative DNA helicase ECDH1ME8569_2962 dnaG; DNA primase ECDH1ME8569_3917 ssb; single strand DNA-binding protein ECDH1ME8569_0202 rnhA; ribonuclease H ECDH1ME8569_0176 rnhB; ribonuclease HII ECDH1ME8569_3735 polA; DNA polymerase I ECDH1ME8569_2345 ligA; NAD-dependent DNA ligase LigA ECDH1ME8569_3532 ligB; NAD-dependent DNA ligase LigB
K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02316 dnaG; DNA primase [EC:2.7.7.101] K03111 ssb; single-strand DNA-binding protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] K03470 rnhB; ribonuclease HII [EC:3.1.26.4] K02335 polA; DNA polymerase I [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
03410 Base excision repair [PATH:edj03410]
03420 Nucleotide excision repair [PATH:edj03420]
03430 Mismatch repair [PATH:edj03430]
ECDH1ME8569_2643 mutS; DNA mismatch repair protein MutS ECDH1ME8569_4027 mutL; DNA mismatch repair protein ECDH1ME8569_2738 mutH; DNA mismatch repair protein ECDH1ME8569_3693 uvrD; DNA-dependent helicase II ECDH1ME8569_1947 sbcB; exonuclease I ECDH1ME8569_2436 xseA; exodeoxyribonuclease VII large subunit ECDH1ME8569_0407 xseB; exodeoxyribonuclease 7 small subunit ECDH1ME8569_1790 exoX; exodeoxyribonuclease 10 ECDH1ME8569_2794 recJ; ssDNA exonuclease RecJ ECDH1ME8569_3917 ssb; single strand DNA-binding protein ECDH1ME8569_0177 dnaE; DNA polymerase III subunit alpha ECDH1ME8569_3588 dnaN; DNA polymerase III subunit beta ECDH1ME8569_0454 dnaX; DNA polymerase III subunits gamma and tau ECDH1ME8569_0609 holA; DNA polymerase III subunit delta ECDH1ME8569_1034 holB; DNA polymerase III subunit delta' ECDH1ME8569_0203 dnaQ; DNA polymerase III subunit epsilon ECDH1ME8569_1788 holE; DNA polymerase III theta subunit ECDH1ME8569_4113 holC; DNA polymerase III subunit chi ECDH1ME8569_4227 holD; DNA polymerase III subunit psi ECDH1ME8569_2345 ligA; NAD-dependent DNA ligase LigA ECDH1ME8569_3532 ligB; NAD-dependent DNA ligase LigB ECDH1ME8569_3266 dam; DNA adenine methylase
K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03573 mutH; DNA mismatch repair protein MutH K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K06223 dam; DNA adenine methylase [EC:2.1.1.72]
03440 Homologous recombination [PATH:edj03440]
ECDH1ME8569_2794 recJ; ssDNA exonuclease RecJ ECDH1ME8569_3917 ssb; single strand DNA-binding protein ECDH1ME8569_3587 recF; DNA replication and repair protein recF ECDH1ME8569_2492 recO; DNA repair protein recO ECDH1ME8569_0456 recR; recombination protein recR ECDH1ME8569_2609 recA; RecA protein ECDH1ME8569_3735 polA; DNA polymerase I ECDH1ME8569_1807 ruvA; Holliday junction DNA resolvasome ECDH1ME8569_1806 ruvB; Holliday junction DNA resolvasome ECDH1ME8569_1809 ruvC; crossover junction endodeoxyribonuclease ruvC ECDH1ME8569_3537 recG; ATP-dependent DNA helicase RecG ECDH1ME8569_2727 recB; exonuclease V subunit beta ECDH1ME8569_2729 recC; exonuclease V subunit gamma ECDH1ME8569_2726 recD; exonuclease V subunit alpha ECDH1ME8569_0177 dnaE; DNA polymerase III subunit alpha ECDH1ME8569_3588 dnaN; DNA polymerase III subunit beta ECDH1ME8569_0454 dnaX; DNA polymerase III subunits gamma and tau ECDH1ME8569_0609 holA; DNA polymerase III subunit delta ECDH1ME8569_1034 holB; DNA polymerase III subunit delta' ECDH1ME8569_0203 dnaQ; DNA polymerase III subunit epsilon ECDH1ME8569_1788 holE; DNA polymerase III theta subunit ECDH1ME8569_4113 holC; DNA polymerase III subunit chi ECDH1ME8569_4227 holD; DNA polymerase III subunit psi ECDH1ME8569_3804 priA; primosome factor n ECDH1ME8569_4058 priB; primosomal replication protein N ECDH1ME8569_0451 priC; primosomal replication protein N'' ECDH1ME8569_4219 dnaT; conserved hypothetical protein
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K03111 ssb; single-strand DNA-binding protein K03629 recF; DNA replication and repair protein RecF K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03553 recA; recombination protein RecA K02335 polA; DNA polymerase I [EC:2.7.7.7] K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K02686 priB; primosomal replication protein N K04067 priC; primosomal replication protein N'' K02317 dnaT; DNA replication protein DnaT
03450 Non-homologous end-joining
03460 Fanconi anemia pathway
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:edj03000]
03021 Transcription machinery [BR:edj03021]
03019 Messenger RNA biogenesis [BR:edj03019]
03041 Spliceosome
03011 Ribosome [BR:edj03011]
03009 Ribosome biogenesis [BR:edj03009]
03016 Transfer RNA biogenesis [BR:edj03016]
03012 Translation factors [BR:edj03012]
03110 Chaperones and folding catalysts [BR:edj03110]
04131 Membrane trafficking [BR:edj04131]
04121 Ubiquitin system [BR:edj04121]
03051 Proteasome [BR:edj03051]
03032 DNA replication proteins [BR:edj03032]
ECDH1ME8569_0202 rnhA; ribonuclease H ECDH1ME8569_1900 dcm; DNA cytosine methylase ECDH1ME8569_3860 hupA; DNA-binding protein HU-alpha ECDH1ME8569_0425 hupB; DNA-binding protein HU-beta ECDH1ME8569_1656 ihfA; integration host factor subunit alpha ECDH1ME8569_0863 ihfB; integration host factor subunit beta ECDH1ME8569_3589 dnaA; chromosomal replication initiator protein DnaA ECDH1ME8569_3909 dnaB; replicative DNA helicase ECDH1ME8569_4218 dnaC; DNA replication protein DnaC ECDH1ME8569_2962 dnaG; DNA primase ECDH1ME8569_3917 ssb; single strand DNA-binding protein ECDH1ME8569_0177 dnaE; DNA polymerase III subunit alpha ECDH1ME8569_3588 dnaN; DNA polymerase III subunit beta ECDH1ME8569_4113 holC; DNA polymerase III subunit chi ECDH1ME8569_0609 holA; DNA polymerase III subunit delta ECDH1ME8569_1034 holB; DNA polymerase III subunit delta' ECDH1ME8569_0203 dnaQ; DNA polymerase III subunit epsilon ECDH1ME8569_0454 dnaX; DNA polymerase III subunits gamma and tau ECDH1ME8569_4227 holD; DNA polymerase III subunit psi ECDH1ME8569_1788 holE; DNA polymerase III theta subunit ECDH1ME8569_0176 rnhB; ribonuclease HII ECDH1ME8569_3735 polA; DNA polymerase I ECDH1ME8569_2345 ligA; NAD-dependent DNA ligase LigA ECDH1ME8569_3532 ligB; NAD-dependent DNA ligase LigB ECDH1ME8569_1553 tus; DNA replication terminus site-binding protein ECDH1ME8569_3266 dam; DNA adenine methylase ECDH1ME8569_0645 seqA; seqA ECDH1ME8569_2422 hda; DnaA-like protein hda ECDH1ME8569_2166 gyrA; DNA gyrase subunit A ECDH1ME8569_3586 gyrB; DNA gyrase subunit B ECDH1ME8569_2915 parC; DNA topoisomerase 4 subunit A ECDH1ME8569_2926 parE; DNA topoisomerase IV subunit B ECDH1ME8569_1213 topA; DNA topoisomerase I ECDH1ME8569_1707 topB; DNA topoisomerase III
K03469 rnhA; ribonuclease HI [EC:3.1.26.4] K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] K05787 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K02313 dnaA; chromosomal replication initiator protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] K02315 dnaC; DNA replication protein DnaC K02316 dnaG; DNA primase [EC:2.7.7.101] K03111 ssb; single-strand DNA-binding protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] K03470 rnhB; ribonuclease HII [EC:3.1.26.4] K02335 polA; DNA polymerase I [EC:2.7.7.7] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K10748 tus; DNA replication terminus site-binding protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] K03645 seqA; negative modulator of initiation of replication K10763 hda; DnaA-homolog protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
03036 Chromosome and associated proteins [BR:edj03036]
03400 DNA repair and recombination proteins [BR:edj03400]
ECDH1ME8569_1280 ogt; O-6-alkylguanine-DNA:cysteine-proteinmethyltransferase ECDH1ME8569_0667 phr; deoxyribodipyrimidine photolyase ECDH1ME8569_2507 ung; uracil-DNA glycosylase ECDH1ME8569_2861 mutY; adenine DNA glycosylase ECDH1ME8569_1577 nth; endonuclease III ECDH1ME8569_0096 mutT; nucleoside triphosphate pyrophosphohydrolase ECDH1ME8569_3525 dut; deoxyuridine triphosphatase ECDH1ME8569_2149 ada; fused DNA-binding transcriptional dual regulator / O6-methylguanine-DNA methyltransferase ECDH1ME8569_2148 alkB; alpha-ketoglutarate-dependent dioxygenase AlkB ECDH1ME8569_2964 ygjF; G/U mismatch-specific DNA glycosylase ECDH1ME8569_2005 alkA; 3-methyl-adenine DNA glycosylase II ECDH1ME8569_3428 tag; DNA-3-methyladenine glycosylase I ECDH1ME8569_3520 mutM; formamidopyrimidine-DNA glycosylase ECDH1ME8569_0673 nei; endonuclease VIII ECDH1ME8569_1693 xthA; exonuclease III ECDH1ME8569_2095 nfo; endonuclease 4 ECDH1ME8569_3858 nfi; endonuclease V ECDH1ME8569_2794 recJ; ssDNA exonuclease RecJ ECDH1ME8569_2345 ligA; NAD-dependent DNA ligase LigA ECDH1ME8569_3532 ligB; NAD-dependent DNA ligase LigB ECDH1ME8569_3735 polA; DNA polymerase I ECDH1ME8569_3916 uvrA; UvrA ECDH1ME8569_0732 uvrB; UvrABC system protein B ECDH1ME8569_1853 uvrC; UvrABC system protein C ECDH1ME8569_1685 cho; nucleotide excision repair endonuclease ECDH1ME8569_3693 uvrD; DNA-dependent helicase II ECDH1ME8569_3846 rpoB; DNA-directed RNA polymerase subunit beta ECDH1ME8569_3847 rpoC; DNA-directed RNA polymerase subunit beta' ECDH1ME8569_3173 rpoA; DNA-directed RNA polymerase subunit alpha ECDH1ME8569_3534 rpoZ; DNA-directed RNA polymerase subunit omega ECDH1ME8569_1049 mfd; transcription-repair coupling factor ECDH1ME8569_2643 mutS; DNA mismatch repair protein MutS ECDH1ME8569_4027 mutL; DNA mismatch repair protein ECDH1ME8569_2738 mutH; DNA mismatch repair protein ECDH1ME8569_1947 sbcB; exonuclease I ECDH1ME8569_2436 xseA; exodeoxyribonuclease VII large subunit ECDH1ME8569_0407 xseB; exodeoxyribonuclease 7 small subunit ECDH1ME8569_1790 exoX; exodeoxyribonuclease 10 ECDH1ME8569_0177 dnaE; DNA polymerase III subunit alpha ECDH1ME8569_3588 dnaN; DNA polymerase III subunit beta ECDH1ME8569_4113 holC; DNA polymerase III subunit chi ECDH1ME8569_0609 holA; DNA polymerase III subunit delta ECDH1ME8569_1034 holB; DNA polymerase III subunit delta' ECDH1ME8569_0203 dnaQ; DNA polymerase III subunit epsilon ECDH1ME8569_0454 dnaX; DNA polymerase III subunits gamma and tau ECDH1ME8569_4227 holD; DNA polymerase III subunit psi ECDH1ME8569_1788 holE; DNA polymerase III theta subunit ECDH1ME8569_3917 ssb; single strand DNA-binding protein ECDH1ME8569_3266 dam; DNA adenine methylase ECDH1ME8569_1899 vsr; DNA mismatch endonuclease of very short patch repair ECDH1ME8569_2727 recB; exonuclease V subunit beta ECDH1ME8569_2729 recC; exonuclease V subunit gamma ECDH1ME8569_2726 recD; exonuclease V subunit alpha ECDH1ME8569_2609 recA; RecA protein ECDH1ME8569_1807 ruvA; Holliday junction DNA resolvasome ECDH1ME8569_1806 ruvB; Holliday junction DNA resolvasome ECDH1ME8569_1809 ruvC; crossover junction endodeoxyribonuclease ruvC ECDH1ME8569_3804 priA; primosome factor n ECDH1ME8569_4058 priB; primosomal replication protein N ECDH1ME8569_0451 priC; primosomal replication protein N'' ECDH1ME8569_4219 dnaT; conserved hypothetical protein ECDH1ME8569_0382 sbcC; exonuclease subunit SbcC ECDH1ME8569_0383 sbcD; exonuclease subunit SbcD ECDH1ME8569_4245 radA; DNA repair protein radA ECDH1ME8569_3587 recF; DNA replication and repair protein recF ECDH1ME8569_3537 recG; ATP-dependent DNA helicase RecG ECDH1ME8569_2492 recO; DNA repair protein recO ECDH1ME8569_0456 recR; recombination protein recR ECDH1ME8569_2536 recN; recombination and repair protein ECDH1ME8569_0379 rdgC; nonspecific DNA binding protein ECDH1ME8569_2665 ygbT; hypothetical protein ECDH1ME8569_2121 yejH; putative ATP-dependent helicase ECDH1ME8569_4117 yjgR; YjgR protein ECDH1ME8569_2166 gyrA; DNA gyrase subunit A ECDH1ME8569_3586 gyrB; DNA gyrase subunit B ECDH1ME8569_1213 topA; DNA topoisomerase I ECDH1ME8569_3860 hupA; DNA-binding protein HU-alpha ECDH1ME8569_0425 hupB; DNA-binding protein HU-beta ECDH1ME8569_1294 recE; exonuclease VIII ECDH1ME8569_1293 recT; recombination and repair protein RecT ECDH1ME8569_3147 fis; DNA-binding protein Fis ECDH1ME8569_1656 ihfA; integration host factor subunit alpha ECDH1ME8569_0863 ihfB; integration host factor subunit beta ECDH1ME8569_3701 recQ; ATP-dependent DNA helicase RecQ ECDH1ME8569_1175 hns; DNA-binding protein H-NS ECDH1ME8569_0219 dinB; DNA polymerase IV ECDH1ME8569_1123 umuC; DNA polymerase V subunit UmuC ECDH1ME8569_1122 umuD; DNA polymerase V subunit UmuD ECDH1ME8569_3900 lexA; LexA repressor ECDH1ME8569_0059 polB; DNA polymerase II ECDH1ME8569_3530 dinD; DNA-damage-inducible protein D ECDH1ME8569_0996 dinI; conserved hypothetical protein ECDH1ME8569_2608 recX; recombination regulator RecX ECDH1ME8569_3290 yhgA; hypothetical protein ECDH1ME8569_2243 yfcI; conserved protein ECDH1ME8569_0126 yadD; putative transposase ECDH1ME8569_2179 yfaD; hypothetical protein ECDH1ME8569_3659 rep; ATP-dependent DNA helicase Rep ECDH1ME8569_0914 helD; DNA helicase IV ECDH1ME8569_1752 yoaA; hypothetical protein ECDH1ME8569_0752 dinG; ATP-dependent DNA helicase DinG ECDH1ME8569_1597 lhr; putative ATP-dependent helicase Lhr ECDH1ME8569_2169 nrdA; ribonucleotide-diphosphate reductase subunit alpha ECDH1ME8569_2591 nrdE; ribonucleotide-diphosphate reductase subunit alpha ECDH1ME8569_2170 nrdB; ribonucleotide-diphosphate reductase subunit beta ECDH1ME8569_2592 nrdF; ribonucleotide-diphosphate reductase subunit beta
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K05984 cho; excinuclease Cho [EC:3.1.25.-] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03555 mutS; DNA mismatch repair protein MutS K03572 mutL; DNA mismatch repair protein MutL K03573 mutH; DNA mismatch repair protein MutH K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K02686 priB; primosomal replication protein N K04067 priC; primosomal replication protein N'' K02317 dnaT; DNA replication protein DnaT K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K03554 rdgC; recombination associated protein RdgC K15342 cas1; CRISP-associated protein Cas1 K19789 radD; DNA repair protein RadD K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K05787 hupA; DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta K10906 recE; exodeoxyribonuclease VIII [EC:3.1.11.-] K07455 recT; recombination protein RecT K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein K04764 ihfA; integration host factor subunit alpha K05788 ihfB; integration host factor subunit beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03746 hns; DNA-binding protein H-NS K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K03502 umuC; DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] K01356 lexA; repressor LexA [EC:3.4.21.88] K02336 polB; DNA polymerase II [EC:2.7.7.7] K14623 dinD; DNA-damage-inducible protein D K12149 dinI; DNA-damage-inducible protein I K03565 recX; regulatory protein K01157 rpnA; recombination-promoting nuclease RpnA [EC:3.1.21.-] K24087 rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-] K24088 rpnC; recombination-promoting nuclease RpnC [EC:3.1.21.-] K24090 rpnE; recombination-promoting nuclease RpnE K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] K03658 helD; DNA helicase IV [EC:5.6.2.4] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
03029 Mitochondrial biogenesis [BR:edj03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Escherichia coli DH1 KEGG Orthology (KO) - Escherichia coli DH1