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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:fjo03030]
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03410 Base excision repair [PATH:fjo03410]
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03420 Nucleotide excision repair [PATH:fjo03420]
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03430 Mismatch repair [PATH:fjo03430]
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03440 Homologous recombination [PATH:fjo03440]
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 Fjoh_0590 single-stranded-DNA-specific exonuclease RecJ
Fjoh_1538 single-strand binding protein
Fjoh_0868 single-strand binding protein
Fjoh_3060 single-strand binding protein/Primosomal replication protein n
Fjoh_3578 single-strand binding protein/Primosomal replication protein n
Fjoh_4383 single-strand binding protein/Primosomal replication protein n
Fjoh_2979 single-strand binding protein
Fjoh_0214 DNA replication and repair protein RecF
Fjoh_0706 DNA repair protein RecO
Fjoh_0362 recombination protein RecR
Fjoh_0988 recA protein
Fjoh_1617 DNA polymerase I
Fjoh_1652 Holliday junction DNA helicase RuvA
Fjoh_1642 ruvB; Holliday junction DNA helicase RuvB
Fjoh_1377 ruvC; crossover junction endodeoxyribonuclease RuvC
Fjoh_2935 ATP-dependent DNA helicase RecG
Fjoh_3569 DNA polymerase III, alpha subunit
Fjoh_1310 DNA polymerase III, alpha subunit
Fjoh_2720 DNA polymerase III, beta subunit
Fjoh_4530 DNA polymerase III, subunits gamma and tau
Fjoh_2918 DNA polymerase III, delta subunit
Fjoh_0985 DNA polymerase III gamma/tau subunits-like protein
Fjoh_1965 DNA polymerase III, epsilon subunit
Fjoh_3451 DNA polymerase III, epsilon subunit
Fjoh_4987 Exonuclease, RNase T and DNA polymerase III
Fjoh_2479 DNA polymerase III, epsilon subunit
Fjoh_2858 Exonuclease, RNase T and DNA polymerase III
Fjoh_3484 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:fjo03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:fjo03000]
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03021 Transcription machinery [BR:fjo03021]
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03019 Messenger RNA biogenesis [BR:fjo03019]
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03041 Spliceosome [BR:fjo03041]
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03011 Ribosome [BR:fjo03011]
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03009 Ribosome biogenesis [BR:fjo03009]
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03016 Transfer RNA biogenesis [BR:fjo03016]
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03012 Translation factors [BR:fjo03012]
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03110 Chaperones and folding catalysts [BR:fjo03110]
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04131 Membrane trafficking [BR:fjo04131]
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04121 Ubiquitin system [BR:fjo04121]
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03051 Proteasome [BR:fjo03051]
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03032 DNA replication proteins [BR:fjo03032]
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03036 Chromosome and associated proteins [BR:fjo03036]
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03400 DNA repair and recombination proteins [BR:fjo03400]
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Fjoh_0876 methylated-DNA--protein-cysteine methyltransferase
Fjoh_0061 Deoxyribodipyrimidine photo-lyase
Fjoh_2912 uracil-DNA glycosylase
Fjoh_1535 A/G-specific adenine glycosylase
Fjoh_2438 DNA-(apurinic or apyrimidinic site) lyase
Fjoh_2740 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
Fjoh_0756 NUDIX hydrolase
Fjoh_0783 NUDIX hydrolase
Fjoh_0784 NUDIX hydrolase
Fjoh_1117 NUDIX hydrolase
Fjoh_1570 NUDIX hydrolase
Fjoh_3393 predicted MutT/NUDIX hydrolase family protein
Fjoh_1063 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Fjoh_1575 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada
Fjoh_1477 HhH-GPD family protein
Fjoh_1605 DNA-3-methyladenine glycosylase I
Fjoh_3364 Formamidopyrimidine-DNA glycolase
Fjoh_1964 exodeoxyribonuclease III Xth
Fjoh_0832 exodeoxyribonuclease III Xth
Fjoh_0480 Deoxyinosine 3'endonuclease (endonuclease V)-like protein
Fjoh_0590 single-stranded-DNA-specific exonuclease RecJ
Fjoh_3475 DNA ligase, NAD-dependent
Fjoh_1617 DNA polymerase I
Fjoh_4509 excinuclease ABC, A subunit
Fjoh_2429 excinuclease ABC, A subunit
Fjoh_2170 excinuclease ABC, B subunit
Fjoh_0726 excinuclease ABC, C subunit
Fjoh_2924 UvrD/REP helicase
Fjoh_3656 Superfamily I DNA and RNA helicase-like protein
Fjoh_3773 ATP-dependent DNA helicase, Rep family
Fjoh_1943 rpoB; DNA-directed RNA polymerase, beta subunit
Fjoh_1944 DNA-directed RNA polymerase, beta' subunit
Fjoh_0371 DNA-directed RNA polymerase, alpha subunit
Fjoh_1202 transcription-repair coupling factor
Fjoh_1723 DNA mismatch repair protein MutS
Fjoh_2913 DNA mismatch repair protein MutS domain protein
Fjoh_0211 DNA mismatch repair protein MutL
Fjoh_3775 Exodeoxyribonuclease VII large subunit
Fjoh_3774 hypothetical protein
Fjoh_3569 DNA polymerase III, alpha subunit
Fjoh_1310 DNA polymerase III, alpha subunit
Fjoh_2720 DNA polymerase III, beta subunit
Fjoh_2918 DNA polymerase III, delta subunit
Fjoh_0985 DNA polymerase III gamma/tau subunits-like protein
Fjoh_1965 DNA polymerase III, epsilon subunit
Fjoh_3451 DNA polymerase III, epsilon subunit
Fjoh_4987 Exonuclease, RNase T and DNA polymerase III
Fjoh_2479 DNA polymerase III, epsilon subunit
Fjoh_2858 Exonuclease, RNase T and DNA polymerase III
Fjoh_4530 DNA polymerase III, subunits gamma and tau
Fjoh_1538 single-strand binding protein
Fjoh_0868 single-strand binding protein
Fjoh_3060 single-strand binding protein/Primosomal replication protein n
Fjoh_3578 single-strand binding protein/Primosomal replication protein n
Fjoh_4383 single-strand binding protein/Primosomal replication protein n
Fjoh_2979 single-strand binding protein
Fjoh_0654 T/G mismatch-specific endonuclease
Fjoh_0988 recA protein
Fjoh_1652 Holliday junction DNA helicase RuvA
Fjoh_1642 ruvB; Holliday junction DNA helicase RuvB
Fjoh_1377 ruvC; crossover junction endodeoxyribonuclease RuvC
Fjoh_3484 primosomal protein N'
Fjoh_0828 DNA repair protein RadA
Fjoh_0214 DNA replication and repair protein RecF
Fjoh_2935 ATP-dependent DNA helicase RecG
Fjoh_0706 DNA repair protein RecO
Fjoh_0362 recombination protein RecR
Fjoh_3465 DNA repair protein RecN
Fjoh_0494 protein of unknown function DUF853, NPT hydrolase putative
Fjoh_3304 Ku domain protein
Fjoh_3303 ATP dependent DNA ligase
Fjoh_2584 DNA gyrase subunit A
Fjoh_2254 DNA gyrase subunit B
Fjoh_1851 DNA topoisomerase I
Fjoh_3368 Topoisomerase IB-like protein
Fjoh_1534 histone family protein DNA-binding protein
Fjoh_0139 histone family protein DNA-binding protein
Fjoh_2808 ATP-dependent DNA helicase RecQ
Fjoh_0281 ATP-dependent DNA helicase, RecQ family
Fjoh_0137 ATP-dependent DNA helicase, RecQ family
Fjoh_3568 DNA-directed DNA polymerase
Fjoh_3768 DNA-directed DNA polymerase
Fjoh_0883 DNA-directed DNA polymerase
Fjoh_1966 DNA-directed DNA polymerase
Fjoh_1967 putative prophage repressor; UmuD; peptidase family S24
Fjoh_3769 DNA polymerase III, alpha subunit
Fjoh_0807 regulatory protein RecX
Fjoh_1756 DEAD/H associated domain protein
Fjoh_0521 ribonucleoside-diphosphate reductase, alpha subunit
Fjoh_4065 ribonucleoside-diphosphate reductase, alpha chain
Fjoh_4066 ribonucleotide reductase
Fjoh_0522 Ribonucleoside-diphosphate reductase
Fjoh_2370 phosphoesterase, RecJ domain protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03503 umuD; DNA polymerase V [EC:3.4.21.-]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:fjo03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Flavobacterium johnsoniae UW101