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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:lmoy03030]
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03410 Base excision repair [PATH:lmoy03410]
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03420 Nucleotide excision repair [PATH:lmoy03420]
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03430 Mismatch repair [PATH:lmoy03430]
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03440 Homologous recombination [PATH:lmoy03440]
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 LMOSLCC2479_1586 recJ; single-stranded-DNA-specific exonuclease
LMOSLCC2479_0045 ssb-1; single-strand binding protein
LMOSLCC2479_2363 single-stranded DNA-binding protein
LMOSLCC2479_2586 ssb-2; single-strand binding protein
LMOSLCC2479_0005 recF; DNA replication and repair protein
LMOSLCC2479_1521 recO; DNA repair protein O
LMOSLCC2479_2780 recR; recombination protein
LMOSLCC2479_1458 recA; recombination protein
LMOSLCC2479_1627 polA; DNA polymerase I
LMOSLCC2479_1594 ruvA; holliday junction DNA helicase
LMOSLCC2479_1593 ruvB; holliday junction DNA helicase
LMOSLCC2479_1875 recG; ATP-dependent DNA helicase RecG
LMOSLCC2479_1570 recD; exodeoxyribonuclease V, alpha chain
LMOSLCC2479_1636 dnaE; DNA polymerase III, alpha subunit
LMOSLCC2479_1380 polC; DNA polymerase III, alpha chain, Gram-positive type
LMOSLCC2479_0002 dnaN; DNA polymerase III, beta subunit
LMOSLCC2479_2782 dnaX; DNA polymerase III, gamma and tau subunits
LMOSLCC2479_1542 holA; DNA polymerase III, delta subunit
LMOSLCC2479_0161 holB; DNA polymerase III, delta subunit
LMOSLCC2479_1888 priA; primosomal protein N' (replication factor Y)
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:lmoy03000]
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03021 Transcription machinery [BR:lmoy03021]
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03019 Messenger RNA biogenesis [BR:lmoy03019]
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03041 Spliceosome
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03011 Ribosome [BR:lmoy03011]
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03009 Ribosome biogenesis [BR:lmoy03009]
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03016 Transfer RNA biogenesis [BR:lmoy03016]
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03012 Translation factors [BR:lmoy03012]
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03110 Chaperones and folding catalysts [BR:lmoy03110]
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04131 Membrane trafficking [BR:lmoy04131]
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04121 Ubiquitin system [BR:lmoy04121]
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03051 Proteasome [BR:lmoy03051]
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03032 DNA replication proteins [BR:lmoy03032]
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03036 Chromosome and associated proteins [BR:lmoy03036]
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03400 DNA repair and recombination proteins [BR:lmoy03400]
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LMOSLCC2479_1009 ogt-1; methylated-DNA-protein-cysteine methyltransferase
LMOSLCC2479_0595 phr; deoxyribodipyrimidine photolyase
LMOSLCC2479_1224 ung-2; uracil-DNA glycosylase
LMOSLCC2479_0392 ung-1; uracil-DNA glycosylase
LMOSLCC2479_0940 putative 3-methyladenine DNA glycosylase
LMOSLCC2479_1753 mutY; A/G-specific adenine glycosylase
LMOSLCC2479_1957 nth; endonuclease III
LMOSLCC2479_0156 DNA repair helicase family protein
LMOSLCC2479_1305 MutT/NUDIX family protein
LMOSLCC2479_1684 MutT/NUDIX family hydrolase protein
LMOSLCC2479_2429 MutT/nudix family protein
LMOSLCC2479_1732 MutT/nudix hydrolase family protein
LMOSLCC2479_1755 dUTPase family protein
LMOSLCC2479_0076 ada; Ada regulatory protein
LMOSLCC2479_2308 adaA; methylphosphotriester-DNA alkyltransferase
LMOSLCC2479_2307 ogt-2; methylated-DNA-protein-cysteine S-methyltransferase
LMOSLCC2479_1703 tag; DNA-3-methyladenine glycosylase I
LMOSLCC2479_1626 mutM; formamidopyrimidine-DNA glycosylase
LMOSLCC2479_1846 exoA; exodeoxyribonuclease
LMOSLCC2479_1510 nfo; apurinic endonuclease IV
LMOSLCC2479_1586 recJ; single-stranded-DNA-specific exonuclease
LMOSLCC2479_1822 ligA; DNA ligase, NAD-dependent
LMOSLCC2479_1627 polA; DNA polymerase I
LMOSLCC2479_2549 uvrA; excinuclease ABC, subunit A
LMOSLCC2479_2550 uvrB; excinuclease ABC, subunit B
LMOSLCC2479_1231 uvrC; excinuclease ABC, C subunit
LMOSLCC2479_1823 pcrA; ATP-dependent DNA helicase
LMOSLCC2479_0258 rpoB; DNA-directed RNA polymerase, beta subunit
LMOSLCC2479_0259 rpoC; DNA-directed RNA polymerase, beta' subunit
LMOSLCC2479_2672 rpoA; DNA-directed RNA polymerase, alpha subunit
LMOSLCC2479_2623 rpoE; DNA-directed RNA polymerase, delta subunit
LMOSLCC2479_1890 rpoZ; DNA-directed RNA polymerase, omega subunit
LMOSLCC2479_0214 mfd; transcription-repair coupling factor
LMOSLCC2479_1463 mutS; DNA mismatch repair protein
LMOSLCC2479_1229 DNA mismatch repair protein
LMOSLCC2479_1464 mutL; DNA mismatch repair protein
LMOSLCC2479_1421 xseA; exodeoxyribonuclease VII, large subunit
LMOSLCC2479_1422 xseB; exodeoxyribonuclease VII, small subunit
LMOSLCC2479_1636 dnaE; DNA polymerase III, alpha subunit
LMOSLCC2479_1380 polC; DNA polymerase III, alpha chain, Gram-positive type
LMOSLCC2479_0002 dnaN; DNA polymerase III, beta subunit
LMOSLCC2479_1542 holA; DNA polymerase III, delta subunit
LMOSLCC2479_0161 holB; DNA polymerase III, delta subunit
LMOSLCC2479_2782 dnaX; DNA polymerase III, gamma and tau subunits
LMOSLCC2479_0045 ssb-1; single-strand binding protein
LMOSLCC2479_2363 single-stranded DNA-binding protein
LMOSLCC2479_2586 ssb-2; single-strand binding protein
LMOSLCC2479_1115 site-specific DNA-methyltransferase
LMOSLCC2479_1570 recD; exodeoxyribonuclease V, alpha chain
LMOSLCC2479_1458 recA; recombination protein
LMOSLCC2479_1594 ruvA; holliday junction DNA helicase
LMOSLCC2479_1593 ruvB; holliday junction DNA helicase
LMOSLCC2479_1888 priA; primosomal protein N' (replication factor Y)
LMOSLCC2479_1709 sbcC; exonuclease, SbcC family
LMOSLCC2479_1710 sbcD; putative exonuclease SbcD
LMOSLCC2479_0234 radA; DNA repair protein
LMOSLCC2479_0005 recF; DNA replication and repair protein
LMOSLCC2479_1875 recG; ATP-dependent DNA helicase RecG
LMOSLCC2479_1521 recO; DNA repair protein O
LMOSLCC2479_2780 recR; recombination protein
LMOSLCC2479_1428 recN; DNA repair protein
LMOSLCC2479_1954 recU-1; recombination protein U
LMOSLCC2479_2361 recU-2; recombination protein U
LMOSLCC2479_2331 addA; ATP-dependent nuclease, subunit A
LMOSLCC2479_2332 addB; ATP-dependent nuclease, subunit B
LMOSLCC2479_0007 gyrA; DNA gyrase, A subunit
LMOSLCC2479_0006 gyrB; DNA gyrase, B subunit
LMOSLCC2479_1335 topA; DNA topoisomerase I
LMOSLCC2479_1997 hup; DNA-binding protein
LMOSLCC2479_2006 putative ATP-dependent DNA helicase
LMOSLCC2479_2835 recQ; ATP-dependent DNA helicase
LMOSLCC2479_2038 dinP; DNA-damage-inducible DNA polymerase IV
LMOSLCC2479_2742 putative DNA polymerase IV 2
LMOSLCC2479_2748 DNA-repair protein, umuC like
LMOSLCC2479_1362 lexA; SOS-response transcriptional repressor
LMOSLCC2479_1757 recX; regulatory protein
LMOSLCC2479_1228 DNA polymerase X family protein
LMOSLCC2479_1962 dinG; ATP-dependent helicase
LMOSLCC2479_2220 nrdA; ribonucleoside-diphosphate reductase, alpha subunit
LMOSLCC2479_2219 nrdB; ribonucleoside-diphosphate reductase, beta subunit
LMOSLCC2479_1637 RecJ-like phosphoesterase family protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K06223 dam; DNA adenine methylase [EC:2.1.1.72]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K02347 polX; DNA polymerase (family X)
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:lmoy03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Listeria monocytogenes SLCC2479 (serotype 3c)