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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:msm03030]
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03410 Base excision repair [PATH:msm03410]
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03420 Nucleotide excision repair [PATH:msm03420]
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03430 Mismatch repair [PATH:msm03430]
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03440 Homologous recombination [PATH:msm03440]
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 MSMEG_4701 single-strand binding protein
MSMEG_6896 single-stranded DNA-binding protein
MSMEG_0003 DNA replication and repair protein RecF
MSMEG_4491 recO; DNA repair protein RecO
MSMEG_6279 recR; recombination protein RecR
MSMEG_2723 recA; protein RecA
MSMEG_3839 DNA polymerase I
MSMEG_2944 ruvA; holliday junction DNA helicase RuvA
MSMEG_2945 ruvB; holliday junction DNA helicase RuvB
MSMEG_2943 ruvC; crossover junction endodeoxyribonuclease RuvC
MSMEG_2403 recG; ATP-dependent DNA helicase RecG
MSMEG_1327 recB; exodeoxyribonuclease V, beta subunit
MSMEG_1328 recC; exodeoxyribonuclease V, gamma subunit
MSMEG_1325 recD; exodeoxyribonuclease V, alpha subunit
MSMEG_3178 DNA polymerase III alpha subunit
MSMEG_0001 dnaN; DNA polymerase III, beta subunit
MSMEG_6285 DNA polymerase III gamma/tau subunit
MSMEG_4572 DNA polymerase III, delta subunit
MSMEG_6153 DNA polymerase III subunit delta
MSMEG_4259 DNA polymerase III, epsilon subunit
MSMEG_6275 DNA polymerase III subunit epsilon
MSMEG_3061 priA; primosomal protein N'
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K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:msm03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:msm03000]
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03021 Transcription machinery [BR:msm03021]
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03019 Messenger RNA biogenesis [BR:msm03019]
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03041 Spliceosome
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03011 Ribosome [BR:msm03011]
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03009 Ribosome biogenesis [BR:msm03009]
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03016 Transfer RNA biogenesis [BR:msm03016]
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03012 Translation factors [BR:msm03012]
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03110 Chaperones and folding catalysts [BR:msm03110]
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04131 Membrane trafficking [BR:msm04131]
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04121 Ubiquitin system [BR:msm04121]
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03051 Proteasome [BR:msm03051]
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03032 DNA replication proteins [BR:msm03032]
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03036 Chromosome and associated proteins [BR:msm03036]
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03400 DNA repair and recombination proteins [BR:msm03400]
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MSMEG_4316 methylated-DNA--protein-cysteine methyltransferase
MSMEG_4928 methylated-DNA--protein-cysteine methyltransferase
MSMEG_2576 deoxyribodipyrimidine photo-lyase
MSMEG_2399 ung; uracil-DNA glycosylase
MSMEG_3759 3-methyladenine DNA glycosylase
MSMEG_6083 base excision DNA repair protein, HhH-GPD family protein
MSMEG_6187 nth; endonuclease III
MSMEG_5706 DNA or RNA helicase of superfamily protein II
MSMEG_5148 CTP pyrophosphohydrolase
MSMEG_0790 hydrolase, NUDIX family protein
MSMEG_4488 hydrolase, nudix family protein
MSMEG_2765 deoxyuridine 5'-triphosphate nucleotidohydrolase
MSMEG_0265 uracil DNA glycosylase superfamily protein
MSMEG_5031 uracil-DNA glycosylase superfamily protein
MSMEG_4925 transcriptional regulator, Ada family protein/DNA-3-methyladenine glycosylase II
MSMEG_5082 tag; DNA-3-methyladenine glycosylase I
MSMEG_2419 mutM; formamidopyrimidine-DNA glycosylase
MSMEG_5545 formamidopyrimidine-DNA glycosylase
MSMEG_1756 endonuclease VIII and dna n-glycosylase with an ap lyase activity
MSMEG_4683 putative formamidopyrimidine-DNA glycosylase
MSMEG_0829 xth; exodeoxyribonuclease III
MSMEG_1656 xth; exodeoxyribonuclease III
MSMEG_1383 endonuclease IV
MSMEG_2362 ligA; DNA ligase, NAD-dependent
MSMEG_3839 DNA polymerase I
MSMEG_6806 uvrA; excinuclease ABC, A subunit
MSMEG_3808 uvrA; excinuclease ABC, A subunit
MSMEG_3816 uvrB; excinuclease ABC, B subunit
MSMEG_3078 uvrC; excinuclease ABC, C subunit
MSMEG_5534 pcrA; ATP-dependent DNA helicase PcrA
MSMEG_1952 ATP-dependent DNA helicase
MSMEG_1943 ATP-dependent DNA helicase
MSMEG_1367 rpoB; DNA-directed RNA polymerase, beta subunit
MSMEG_1368 rpoC; DNA-directed RNA polymerase, beta' subunit
MSMEG_1524 rpoA; DNA-directed RNA polymerase, alpha subunit
MSMEG_3053 rpoZ; DNA-directed RNA polymerase, omega subunit
MSMEG_5423 mfd; transcription-repair coupling factor
MSMEG_5226 xseA; exodeoxyribonuclease VII, large subunit
MSMEG_5227 xseB; exodeoxyribonuclease VII, small subunit
MSMEG_3178 DNA polymerase III alpha subunit
MSMEG_0001 dnaN; DNA polymerase III, beta subunit
MSMEG_4572 DNA polymerase III, delta subunit
MSMEG_6153 DNA polymerase III subunit delta
MSMEG_4259 DNA polymerase III, epsilon subunit
MSMEG_6275 DNA polymerase III subunit epsilon
MSMEG_6285 DNA polymerase III gamma/tau subunit
MSMEG_4701 single-strand binding protein
MSMEG_6896 single-stranded DNA-binding protein
MSMEG_1327 recB; exodeoxyribonuclease V, beta subunit
MSMEG_1328 recC; exodeoxyribonuclease V, gamma subunit
MSMEG_1325 recD; exodeoxyribonuclease V, alpha subunit
MSMEG_2723 recA; protein RecA
MSMEG_2944 ruvA; holliday junction DNA helicase RuvA
MSMEG_2945 ruvB; holliday junction DNA helicase RuvB
MSMEG_2943 ruvC; crossover junction endodeoxyribonuclease RuvC
MSMEG_3061 priA; primosomal protein N'
MSMEG_6079 radA; DNA repair protein RadA
MSMEG_0003 DNA replication and repair protein RecF
MSMEG_2403 recG; ATP-dependent DNA helicase RecG
MSMEG_4491 recO; DNA repair protein RecO
MSMEG_6279 recR; recombination protein RecR
MSMEG_4723 conserved hypothetical protein
MSMEG_5580 Ku protein
MSMEG_5570 DNA ligase
MSMEG_0456 DNA gyrase subunit A
MSMEG_0006 gyrA; DNA gyrase, A subunit
MSMEG_0457 DNA topoisomerase IV subunit B
MSMEG_0005 gyrB; DNA gyrase, B subunit
MSMEG_1229 gyrB; DNA gyrase, B subunit
MSMEG_6157 topA; DNA topoisomerase I
MSMEG_1784 type I topoisomerase
MSMEG_2389 hup; DNA-binding protein HU
MSMEG_5935 ATP-dependent DNA helicase
MSMEG_5397 recQ; ATP-dependent DNA helicase RecQ
MSMEG_5399 ATP-dependent DNA helicase RecQ
MSMEG_1014 dinB; DNA polymerase IV
MSMEG_2294 dinB; DNA polymerase IV
MSMEG_3172 DNA polymerase IV 1
MSMEG_6443 dinP; DNA polymerase IV
MSMEG_2740 lexA; LexA repressor
MSMEG_1622 putative DNA repair polymerase
MSMEG_1633 DNA polymerase III, alpha subunit, putative
MSMEG_2724 regulatory protein RecX
MSMEG_4912 putative helicase
MSMEG_1757 DEAD/DEAH box helicase
MSMEG_2390 hydrolase, NUDIX family protein
MSMEG_3745 MutT/nudix family protein
MSMEG_1019 ribonucleoside-diphosphate reductase, alpha subunit
MSMEG_2299 ribonucleoside-diphosphate reductase, alpha subunit
MSMEG_1033 ribonucleoside-diphosphate reductase, beta subunit
MSMEG_2313 ribonucleoside-diphosphate reductase, beta subunit
MSMEG_0358 ribonucleoside-diphosphate reductase, beta subunit
MSMEG_2630 DHH family protein
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:msm03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Mycolicibacterium smegmatis MC2 155