Transfer RNA Biogenesis - Photobacterium profundum

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 Eukaryotic type
   5'processing factors
   3'processing and CCA adding factors
   tRNA spricing factors
   tRNA transport factors
   Aminoacyl-tRNA synthetases (AARSs)
   tRNA modification factors
     Deaminases
     Dihydorouridine synthases
     Methylthiotransferase
     Methyltransferases
     Psudouridine synthases
     Thiolation factors
     KEOPS/EKC complex
     Elongator complex
     Elongator related proteins
     Other tRNA modification factors
       PBPRA3573 YRDC; Putative Sua5/YciO/YrdC family protein
       PBPRA3351 VV3072; putative tRNA delta(2)-isopentenylpyrophosphate transferase
       PBPRA0002 S4013; Putative thiophene and furan oxidation protein ThdF
       PBPRA3615 S3947; Putative glucose inhibited division protein A
       PBPRA2592 PLU2551; Putative selenophosphate synthase
       PBPRB1545 EF2567; Hypothetical selenophosphate synthase
K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] 
K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] 
K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] 
K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme 
K01008 selD; selenide, water dikinase [EC:2.7.9.3] 
K01008 selD; selenide, water dikinase [EC:2.7.9.3] 
   tRNA degradation factors
 
 Prokaryotic type
   5'processing factors
   3'processing and CCA adding factors
   tRNA spricing factors
   tRNA transport factors
   Aminoacyl-tRNA synthetases (AARSs)
   tRNA modification factors
     Deaminases
     Dihydorouridine synthases
     Methylthiotransferases
     Methyltransferases
     Psudouridine synthases
     Thiolation factors
     KEOPS/EKC complex
     Other tRNA modification factors
       PBPRA3615 S3947; Putative glucose inhibited division protein A
       PBPRA3351 VV3072; putative tRNA delta(2)-isopentenylpyrophosphate transferase
       PBPRA2472 STY4809; putative tRNA-(MS[2]IO[6]A)-hydroxylase
       PBPRA2659 hypothetical peptidase
       PBPRA0742 QUEA; putative S-adenosylmethionine:tRNAribosyltransferase-isomerase
       PBPRA0968 ECS0498; putative exsB protein
       PBPRA2333 STY3080; putative organic radical activating enzymes
       PBPRA2982 T2876; conserved hypothetical protein
       PBPRA3356 YJES; putative iron-sulfur cluster-binding protein
       PBPRA2592 PLU2551; Putative selenophosphate synthase
       PBPRB1545 EF2567; Hypothetical selenophosphate synthase
       PBPRA2591 Z0657; hypothetical ATPase
       PBPRA0743 TGT; Putative queuine tRNA-ribosyltransferase
       PBPRA0810 Putative thiamin biosynthesis protein, ThiI
       PBPRA2951 SF0178; hypothetical cell cycle protein MesJ
       PBPRB2023 conserved hypothetical protein
       PBPRA1071 YEAZ; Conserved hypothetical protein
       PBPRA3573 YRDC; Putative Sua5/YciO/YrdC family protein
       PBPRA0434 SF3105; putative O-sialoglycoprotein endopeptidase
       PBPRA3354 Y0626; putative nucleotide-binding protein
       PBPRA2993 Z4129; putative HesA/MoeB/ThiF family protein
K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme 
K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] 
K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69] 
K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] 
K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] 
K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] 
K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] 
K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] 
K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] 
K01008 selD; selenide, water dikinase [EC:2.7.9.3] 
K01008 selD; selenide, water dikinase [EC:2.7.9.3] 
K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] 
K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] 
K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] 
K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] 
K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193] 
K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB 
K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] 
K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] 
K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE 
K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase 
   tRNA degradation factors

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Last updated: February 29, 2024