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KO |
 09100 Metabolism
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 09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:smq03030]
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 SinmeB_5541 Exonuclease RNase T and DNA polymerase III
SinmeB_3112 DNA polymerase III, epsilon subunit
SinmeB_0916 DNA polymerase III, alpha subunit
SinmeB_3334 DNA polymerase III, subunits gamma and tau
SinmeB_1277 DNA polymerase III subunit delta'
SinmeB_3099 DNA polymerase III, delta subunit
SinmeB_0781 DNA polymerase III chi subunit HolC
SinmeB_3441 DNA polymerase III, beta subunit
SinmeB_0755 replicative DNA helicase
SinmeB_2146 DNA primase
SinmeB_1226 single-strand binding protein
SinmeB_0527 Ribonuclease H
SinmeB_0451 Ribonuclease H
SinmeB_3279 DNA polymerase I
SinmeB_1988 DNA ligase
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K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03111 ssb; single-strand DNA-binding protein
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03410 Base excision repair [PATH:smq03410]
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03420 Nucleotide excision repair [PATH:smq03420]
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03430 Mismatch repair [PATH:smq03430]
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SinmeB_0028 DNA mismatch repair protein mutS
SinmeB_0428 DNA mismatch repair protein mutL
SinmeB_1966 UvrD/REP helicase
SinmeB_5337 UvrD/REP helicase
SinmeB_3404 Exodeoxyribonuclease 7 large subunit
SinmeB_0494 Exodeoxyribonuclease 7 small subunit
SinmeB_1470 single-stranded-DNA-specific exonuclease RecJ
SinmeB_1226 single-strand binding protein
SinmeB_0916 DNA polymerase III, alpha subunit
SinmeB_3441 DNA polymerase III, beta subunit
SinmeB_3334 DNA polymerase III, subunits gamma and tau
SinmeB_3099 DNA polymerase III, delta subunit
SinmeB_1277 DNA polymerase III subunit delta'
SinmeB_5541 Exonuclease RNase T and DNA polymerase III
SinmeB_3112 DNA polymerase III, epsilon subunit
SinmeB_0781 DNA polymerase III chi subunit HolC
SinmeB_1988 DNA ligase
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K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
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03440 Homologous recombination [PATH:smq03440]
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SinmeB_1470 single-stranded-DNA-specific exonuclease RecJ
SinmeB_1226 single-strand binding protein
SinmeB_3292 DNA replication and repair protein recF
SinmeB_0710 DNA repair protein recO
SinmeB_3337 Recombination protein recR
SinmeB_1549 Protein recA
SinmeB_3279 DNA polymerase I
SinmeB_2581 Holliday junction ATP-dependent DNA helicase ruvA
SinmeB_2580 Holliday junction ATP-dependent DNA helicase ruvB
SinmeB_2582 Crossover junction endodeoxyribonuclease ruvC
SinmeB_1399 ATP-dependent DNA helicase RecG
SinmeB_0916 DNA polymerase III, alpha subunit
SinmeB_3441 DNA polymerase III, beta subunit
SinmeB_3334 DNA polymerase III, subunits gamma and tau
SinmeB_3099 DNA polymerase III, delta subunit
SinmeB_1277 DNA polymerase III subunit delta'
SinmeB_5541 Exonuclease RNase T and DNA polymerase III
SinmeB_3112 DNA polymerase III, epsilon subunit
SinmeB_0781 DNA polymerase III chi subunit HolC
SinmeB_2866 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining [PATH:smq03450]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:smq03000]
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03021 Transcription machinery [BR:smq03021]
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03019 Messenger RNA biogenesis [BR:smq03019]
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03041 Spliceosome
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03011 Ribosome [BR:smq03011]
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03009 Ribosome biogenesis [BR:smq03009]
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03016 Transfer RNA biogenesis [BR:smq03016]
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03012 Translation factors [BR:smq03012]
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03110 Chaperones and folding catalysts [BR:smq03110]
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04131 Membrane trafficking [BR:smq04131]
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04121 Ubiquitin system
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03051 Proteasome [BR:smq03051]
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03032 DNA replication proteins [BR:smq03032]
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SinmeB_0527 Ribonuclease H
SinmeB_1335 C-5 cytosine-specific DNA methylase
SinmeB_0885 histone family protein DNA-binding protein
SinmeB_0850 Integration host factor subunit alpha
SinmeB_0019 Integration host factor subunit beta
SinmeB_0001 Chromosomal replication initiator protein dnaA
SinmeB_0755 replicative DNA helicase
SinmeB_2146 DNA primase
SinmeB_5385 Replication protein-C domain-containing protein
SinmeB_4621 replication protein C
SinmeB_1226 single-strand binding protein
SinmeB_0916 DNA polymerase III, alpha subunit
SinmeB_3441 DNA polymerase III, beta subunit
SinmeB_0781 DNA polymerase III chi subunit HolC
SinmeB_3099 DNA polymerase III, delta subunit
SinmeB_1277 DNA polymerase III subunit delta'
SinmeB_5541 Exonuclease RNase T and DNA polymerase III
SinmeB_3112 DNA polymerase III, epsilon subunit
SinmeB_3334 DNA polymerase III, subunits gamma and tau
SinmeB_0451 Ribonuclease H
SinmeB_3279 DNA polymerase I
SinmeB_1988 DNA ligase
SinmeB_1228 DNA gyrase, A subunit
SinmeB_3119 DNA gyrase, B subunit
SinmeB_0825 DNA topoisomerase IV, A subunit
SinmeB_1063 DNA topoisomerase IV, B subunit
SinmeB_4952 DNA topoisomerase I catalytic core domain protein
SinmeB_0927 DNA topoisomerase I
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K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02316 dnaG; DNA primase [EC:2.7.7.101]
K18996 repC; replication initiation protein RepC
K18996 repC; replication initiation protein RepC
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:smq03036]
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03400 DNA repair and recombination proteins [BR:smq03400]
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SinmeB_4813 methylated-DNA/protein-cysteine methyltransferase
SinmeB_2755 Uracil-DNA glycosylase
SinmeB_6477 Uracil-DNA glycosylase superfamily
SinmeB_4812 3-methyladenine DNA glycosylase
SinmeB_0541 A/G-specific adenine glycosylase
SinmeB_3272 endonuclease III
SinmeB_2454 mutator MutT protein
SinmeB_3451 Deoxyuridine 5'-triphosphate nucleotidohydrolase
SinmeB_0070 methylated-DNA/protein-cysteine methyltransferase
SinmeB_3270 transcriptional regulator, AraC family
SinmeB_3154 2OG-Fe(II) oxygenase
SinmeB_0653 phage SPO1 DNA polymerase-related protein
SinmeB_4949 phage SPO1 DNA polymerase-related protein
SinmeB_2467 HhH-GPD family protein
SinmeB_0396 DNA-3-methyladenine glycosylase I
SinmeB_3472 Formamidopyrimidine-DNA glycosylase
SinmeB_1394 exodeoxyribonuclease III Xth
SinmeB_4831 exodeoxyribonuclease III Xth
SinmeB_2971 exodeoxyribonuclease III
SinmeB_1151 exodeoxyribonuclease III Xth
SinmeB_1470 single-stranded-DNA-specific exonuclease RecJ
SinmeB_1988 DNA ligase
SinmeB_3279 DNA polymerase I
SinmeB_1225 UvrABC system protein A
SinmeB_1652 UvrABC system protein B
SinmeB_0797 excinuclease ABC, C subunit
SinmeB_1966 UvrD/REP helicase
SinmeB_5337 UvrD/REP helicase
SinmeB_0975 DNA-directed RNA polymerase subunit beta
SinmeB_0976 DNA-directed RNA polymerase subunit beta'
SinmeB_1008 DNA-directed RNA polymerase subunit alpha
SinmeB_0686 DNA-directed RNA polymerase subunit omega
SinmeB_1397 transcription-repair coupling factor
SinmeB_0028 DNA mismatch repair protein mutS
SinmeB_0428 DNA mismatch repair protein mutL
SinmeB_3404 Exodeoxyribonuclease 7 large subunit
SinmeB_0494 Exodeoxyribonuclease 7 small subunit
SinmeB_0916 DNA polymerase III, alpha subunit
SinmeB_3441 DNA polymerase III, beta subunit
SinmeB_0781 DNA polymerase III chi subunit HolC
SinmeB_3099 DNA polymerase III, delta subunit
SinmeB_1277 DNA polymerase III subunit delta'
SinmeB_5541 Exonuclease RNase T and DNA polymerase III
SinmeB_3112 DNA polymerase III, epsilon subunit
SinmeB_3334 DNA polymerase III, subunits gamma and tau
SinmeB_1226 single-strand binding protein
SinmeB_1549 Protein recA
SinmeB_2581 Holliday junction ATP-dependent DNA helicase ruvA
SinmeB_2580 Holliday junction ATP-dependent DNA helicase ruvB
SinmeB_2582 Crossover junction endodeoxyribonuclease ruvC
SinmeB_2866 primosomal protein N'
SinmeB_0750 DNA repair protein RadA
SinmeB_3292 DNA replication and repair protein recF
SinmeB_1399 ATP-dependent DNA helicase RecG
SinmeB_0710 DNA repair protein recO
SinmeB_3337 Recombination protein recR
SinmeB_1989 DNA repair protein RecN
SinmeB_3140 double-strand break repair helicase AddA
SinmeB_3141 double-strand break repair protein AddB
SinmeB_0578 protein of unknown function DUF853 NPT hydrolase
SinmeB_4834 DNA repair protein
SinmeB_4989 DNA repair protein
SinmeB_4990 DNA repair protein
SinmeB_6422 Ku protein
SinmeB_1662 DNA polymerase LigD, ligase domain protein
SinmeB_5610 DNA polymerase LigD, ligase domain protein
SinmeB_2574 DNA ligase D
SinmeB_4042 DNA ligase D
SinmeB_1228 DNA gyrase, A subunit
SinmeB_3119 DNA gyrase, B subunit
SinmeB_4952 DNA topoisomerase I catalytic core domain protein
SinmeB_0927 DNA topoisomerase I
SinmeB_0885 histone family protein DNA-binding protein
SinmeB_0850 Integration host factor subunit alpha
SinmeB_0019 Integration host factor subunit beta
SinmeB_2145 ATP-dependent DNA helicase RecQ
SinmeB_1199 ATP-dependent DNA helicase, RecQ family
SinmeB_5362 DNA-directed DNA polymerase
SinmeB_0918 DNA polymerase IV
SinmeB_1286 SOS-response transcriptional repressor, LexA
SinmeB_6076 hypothetical protein
SinmeB_2943 hypothetical protein
SinmeB_2942 UMUC domain protein DNA-repair protein
SinmeB_6078 DNA polymerase III, alpha subunit
SinmeB_2941 Error-prone DNA polymerase
SinmeB_0160 DEAD/H associated domain protein
SinmeB_1223 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:smq03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Sinorhizobium meliloti BL225C