Linked Databases in DBGET

Linked Databases in DBGET

DBGET	LinkDB	KEGG2

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1. KEGG Databases in DBGET

Source database (24 DBs)
Database	Number of links
Database	Total	Equivalent	Forward	Reverse	Indirect
`brite`	`28301979`			`28301979`
`compound`	`25730944`				`25730944`
`disease`	`11168`		`5587`	`5581`
`drug`	`24064`		`12043`	`12021`
`embl`	`2164846`	`2164846`
`enzyme`	`11362586`		`5856056`	`5506530`
`genbank`	`2169155`	`2164846`		`4309`
`genome`	`26668216`			`26668216`
`module`	`3442681`			`3442681`
`ncbi-geneid`	`18356708`	`9178354`		`9178354`
`ncbi-proteinid`	`50697512`	`25348756`		`25348756`
`network`	`9068`		`4534`	`4534`
`oc`	`21831538`		`21831538`
`omim`	`37553`	`15653`	`6194`	`15706`
`orthology`	`23616476`		`11808202`	`11808274`
`pathway`	`19515952`			`19515952`
`pdb`	`3`		`3`
`pfam`	`89589525`			`89589525`
`pubmed`	`4210`			`4210`
`reaction`	`9020827`				`9020827`
`refseq`	`24667813`	`23252240`		`1415573`
`swissprot`	`1508159`	`502369`	`503450`	`502340`
`unigene`	`559078`	`559078`
`uniprot`	`50899943`	`17134675`	`16634310`	`17130958`

Target database (92 DBs)
Database	Number of links
Database	Total	Equivalent	Forward	Reverse	Indirect
`animalqtldb`	`1`		`1`
`aphidbase`	`8581`		`8581`
`apidb_cryptodb`	`3805`		`3805`
`araport`	`32430`		`32430`
`asap`	`4468`		`4468`
`beebase`	`8867`		`8867`
`beetlebase`	`629`		`629`
`bgd-bta`	`14136`		`14136`
`brc-dna`	`128366`			`128366`
`brc-epd`	`22642`			`22642`
`brite`	`28301979`		`28301979`
`bsorf`	`4017`		`4017`
`cambridge`	`7264`		`7264`
`cgnc`	`20411`		`20411`
`compound`	`25730944`				`25730944`
`cyanobase`	`79966`		`79966`
`cyorf`	`103939`		`103939`
`dictybase`	`13243`		`13243`
`disease`	`11168`		`5581`	`5587`
`drug`	`24064`		`12021`	`12043`
`ecocyc`	`4216`		`4216`
`embl`	`2164846`	`2164846`
`ensembl`	`456024`		`456024`
`ensemblgenomes-gn`	`1198`		`1198`
`ensemblgenomes-tr`	`1198`		`1198`
`enzyme`	`11362586`		`5506530`	`5856056`
`flybase`	`186563`		`186563`
`genbank`	`2169155`	`2164846`	`4309`
`genedb`	`86105`		`86105`
`genes`	`70650`		`35325`	`35325`
`genome`	`26665123`		`26665123`
`genoscope`	`39580`		`39580`
`hgnc`	`26509`		`26509`
`imgt`	`1`		`1`
`inra`	`7496`		`7496`
`jamstec`	`3550`		`3550`
`jgi`	`852362`		`852362`
`kitasato`	`22787`		`22787`
`lncc_brazil`	`6567`		`6567`
`maizegdb`	`62`		`62`
`mips`	`32430`		`32430`
`mirbase`	`14928`		`14928`
`module`	`1967119`		`1967119`
`nagahama-h`	`1703`	`1703`
`nagahama-s`	`674`	`674`
`nasoniabase`	`8328`		`8328`
`ncbi-geneid`	`18359162`	`9179581`	`9179581`
`ncbi-proteinid`	`50695420`	`25347710`	`25347710`
`network`	`9068`		`4534`	`4534`
`nih_japan`	`7051`		`7051`
`nite`	`85399`		`85399`
`oc`	`21831538`			`21831538`
`omim`	`37557`	`15657`	`15706`	`6194`
`orcae`	`285`		`285`
`orthology`	`24330827`		`11808159`	`12522668`
`oryzabase`	`930`		`930`
`pasteur`	`43427`		`43427`
`pathogenesis`	`5629`		`5629`
`pathway`	`19515728`		`19515728`
`pdb`	`3`			`3`
`pfam`	`89583914`		`89583914`
`pgdbj`	`508978`	`508978`
`pharos`	`18770`		`18770`
`plasmodb`	`4812`		`4812`
`pombase`	`5110`		`5110`
`pronit`	`7591`	`7591`
`protherm`	`8313`	`8313`
`pubmed`	`4210`		`4210`
`rap-db`	`34709`		`34709`
`reaction`	`9020751`				`9020751`
`refgene`	`202661815`			`202661815`
`refseq`	`24668271`	`23249654`	`1418617`
`regulondb`	`4400`		`4400`
`rgd`	`32412`		`32412`
`rhizobase`	`93397`		`93397`
`roseobase`	`12472`		`12472`
`sgd`	`6292`		`6292`
`shibase_china`	`13953`		`13953`
`swissprot`	`1508542`	`502428`	`502330`	`503784`
`tair`	`27498`		`27498`
`tax`	`323100`		`323100`
`tgd`	`20934`		`20934`
`tuberculist`	`3916`		`3916`
`unam`	`1613`		`1613`
`unigene`	`559187`	`559187`
`uniprot`	`50899956`	`17134675`	`17130700`	`16634581`
`vectorbase`	`62710`		`62710`
`vega`	`57494`		`57494`
`vgnc`	`53191`		`53191`
`wormbase`	`39477`		`39477`
`xenbase`	`33377`		`33377`
`zfin`	`22274`		`22274`

2. Other DBGET Databases