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LinkDB: database of link information


DBGET LinkDB KEGG2

Search links from in format

(Note) Specify a single entry or multiple entries in the form of db:entry, such as hsa:126 hsa:127
To retrieve all links between two databases, use the LinkDB diagram below.

Links are categorized into the following 4 types.

equivalent links are special original links to signify equivalent contents between KEGG GENES, COMPOUND, DRUG, REACTION databases and databases other than KEGG.

original links are extracted from the database entries provided by the GenomeNet DBGET system.

reverse links are derived from the original links by exchanging a source entry and its target entry.

indirect links are derived by combining two or more original links. Currently, links from KEGG GENES to REACTION via KO, and to COMPOUND via REACTION are available.

LinkDB information

Database and link statistics

DBGET databases
Link-only databases

REST API & RDF

URI prefixes



linkmap

Click database names to download link information between two databases
    from to in format


Download equivalent link information for a selected organism

for in format

Download equivalent link information for COMPOUND, DRUG and REACTION

for in format


LinkDB API

A REST-like API for LinkDB search is available via:

http://rest.genome.jp/link/<arguments>

Example: http://rest.genome.jp/link/hsa:126 or
  http://rest.genome.jp/link/hsa:126/equivalent for only equivalent links

See API help page for more details.



Last updated: June 4, 2014
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pubmed umbbd tc cazy tax ictv clinvar cosm cosf dbsnp dbvar omimvar go prosdoc prosite pfam epd expression refseq uniprot swissprot pdbstr pdb interpro ensembl insdc ncbi-gene hgnc genome genes orthology oc 50genomes nagahama brc-dna smart scop virushostdb viralzone brite pathway module network disease drug variant reaction enzyme rclass compound glycan pmd aaindex carbbank omim chembl knapsack pubchem chebi pdb-ccd 3dmet drugbank lipidbank lipidmaps ligandbox sider hsdb hmdb nikkaji massbank sabio-rk brenda jcggdb glytoucan glycoepitope plant_viruses_online descriptions_of_plant_viruses