Sequence Similarity Search

BLAST Search

BLAST	FASTA	KEGG2

Enter query sequence:

Sequence data

>mtu:Rv0578c no KO assigned | (RefSeq) PE_PGRS7; PE-PGRS family protein PE_PGRS7 (N)
atgtcgttcgtaatcgcgacgccggagatgctgaccacggcggcaacggatttggcgaaa
attggttcgacgatcactgcggccaacaccgcagcggccgcggtggcgaaagtgctgccc
gcgtcagccgacgaggtgtcggtggccgttgcggcgttgttcggcacgcacgcccaggaa
tatcagaccgtcagcgcccaagtggcgacgtttcatgaccggttcgtgcagaccctgtcc
gcggccgcgagctcgtacgtggccgccgaggcggtcaacgttgaacagagtttgctagcc
gcggtcaatgcgcccacccaggcgctgttcggacgcccgctgatcggcaacggcgccgac
ggctcccccgggaccgggcaggccggcgggccaggcggcatcttgtacggcaacggcggc
aacggcgggtctggggcgccaggacaacgaggcggggccggcggggcggcgggcctaatc
ggtaacggcggcaacggtggagccggcggcgtgggtaccaccggcggggccggtggtcac
ggcggcgcgggcgggtggctgtatggcaacggaggcgccgggggttttggcggggccggg
gcggtcggcggcaacggcggggccggcggtaccgccgggttgttcggtgtcggcggggcc
ggtggggccggaggcaacggcatcgccggtgtcacgggtacgtcggccagcacaccgggt
ggatccggcaccgctggcggggccggcgggatcggcggcaacggcggggccggcggggcc
ggcggggtgctgatgggcaacggcggcaacggcggggccggcggcgagggcgggcccggc
ggcgccggcggtgcgggcgccagcggcgcccacgccaccaacttgggcgctgacggtcaa
gccggcggaaacggcgggaatggtggggctggcgggaccggcggggtcggcgggcccggc
ggcggccacggtctgctcggcctcggcggcagccacggcgccggcggggctggcggtagc
ggcggtgacggcggagctcccggtgacggcggcaacggcgctaccgggacgtggggtcac
aaccttggtgccggcgggaccggtggcaatggcggcaacccgggcgccggtggggccggt
ggcgccggtggcgccagcgtcggcggcagcgcgcatggcgcgaacggcgcgcccggcacc
acctccaccagcggtggtaacggcggcgacggcggcaaaggcgccgacgctatcagcagc
ggacagaccggcgcgaacggtggcaggggtggcgacggcggtcaggtgggtaatggcggt
gccggtggggccggtggccgcggcggggccggcggtctcggatttggatccgaagcgccc
ggtcgccccggcggggccggcggcaccggcggggccggcggcaacggcggaactcaggcc
ggtgacggcggcaccggaggtgctggcggggccggcggcgatggcggatccggaggtgct
ggcagcatcggcttcaatgcgtccgctcccggggccgcaggctcacccggcgggaatggc
ggtaacggtgggcctggcggagccggcggcgagggcggggccggcggtctcgcgttggcc
gcctcgggccagaacggcagccagggcgctggcggtgacggcggagccggcgggaacggc
gggactcctggcaacggcggtcacggcgccgccggcgcgctcggtgtcaacggtggtgta
ggtggcgccggtggccacggcggtgatcccggtgtcggcggtgccggcggccagggcgga
agcggctccacccccggtgccaacggcgcacccggcaacacccccaccagcggcggcaac
ggcggcaacggcggcagaggcgccgatgccaccggctttggccagaccggcgcgtccggc
ggcaggggcggtgatggcggtttggtcggcaacggcggcgccggcggcgccggcggcaac
ggcagcaaaggcctgcccggtctgggcaggctcggcaaccccggcctggatggcggcacc
ggcggaaacggtggggccggtggatccggcggcgcctgggcgggcaacggtggcaccggc
ggggccggcggcaccggcggcgtcggcgggactggagggtccggcagcgacggtgtcaac
ggttccagcgcgggcgcggacgggcaccccggcggcaccggcggagttggcggtaccggc
ggaaaaggtggggacggcggggacggcggggccgcacccaacggcgtcgccggcagccaa
ggccccggcggtgccggcggcgacggtgggaccggcggagttggcggtaacggcggccgc
ggcattgacggcgccgacggcgccaccgcgggtgcccgcggccaggatggcggcgccggc
ggggccggcggaaagggcggccgaggcgggaccggcgggccgggcggggccgggccggcg
ggcacaaccggcagccaaggcgccggcggcaacggcggcagcggcggcaccggcggggac
cccggtgacggcggcaacggcgctaacggcagcgtgttcaccaacaacggcatcggcggc
aacggcggcaacggcggcaacgccggccccagcggggccggcgggagtggcggcgccggc
tccactttcggtgcgaccggctcaagcagcagcattcatgtcaacggcggcaacggcggc
aacggcggcaacggcgaccatgccctcagcggcaacggcgcggccggcggcaacggcggc
aacggcggcaacggcagcctgcgcggcagcggtggggccggcggccacggcggcaacggc
ggcaatgccagcaggggcatgggcggtgacggcggaaccggtggcgccggcggaaacgcc
gggcagattggcaacggcggagcgggcggcaatggcggagacggcggcaccggtagtgac
ggcaatcccggagccattaccggcagcggcggccgcggcggcgacggcggcgtaggcggg
caaggtgggagcgtcgccggcgacggcgctgacggcggccggggcggggccggcggcacg
ggcgggacgggcctgcggggcaccaccggcgccaccggtgcgaccggcacattcgacgct
ggcgcggacggtcacggcggtaacggtggcaccggcggggttggcgggaccggcggcgcc
ggcggcggcggcggcaacggcggggccggcggcaaagcgctgtcgccaacgggcaacaac
ggcagccaaggcgccggcggagatggtggggccggtggcgccggcggcaccggcggcacc
ggcggcgacggcggcagaggtgcccacggcactctcttcagcagcctcgctggcactggc
gggactggcggaaatggcggcaccggcggcaccggcggcaccggtggtgccggcggtgcc
ggcgggaccggttccaccctgggcgcgaccggtgcgacaggggcggccggccgcgccgga
aacggtggcgtcggcggcagtggcggccttggctccgcctttggccccggcggcaccggc
ggcatgggcggcgccggcggcaccagcaccgtcagcgccggcggtgacggcggaaggggc
ggcttcggcggcgacggccttgatgccagttccggtgggaatggcggggacggcgggcac
ggtggcgacggcttcaggaccgctggggcgggcgggcgaggtggggacggcggcaaaggg
gccgaccccggcggtttattcccgatccctggggctggcggtaagggtggcaccggtggc
accggcggcaccgcacacctcgggcccctggccatcatcggccaatccggccagcccggc
cagttcggcagccccggcgccgacggccgcggcggggccgggggcgcaggcgggggcggc
ggcgccggcggcagcttctag

Select program and database:

BLASTP (prot query vs prot db)
BLASTX (nucl query vs prot db)

KEGG GENES

	Eukaryotes Prokaryotes Viruses
	Favorite organism code or category

KEGG MGENES

	Environmental Organismal
	Favorite samples

Microbial Reference Genes

Ocean (OM-RGC) Human gut (IGC)

nr-aa (GenBank, UniProt, RefSeq and PDBSTR)
Swiss-Prot UniProt RefSeq
PDBSTR
UniRef50 UniRef90 UniRef100
Virus-Host DB

BLASTN (nucl query vs nucl db)
TBLASTN (prot query vs nucl db)

KEGG GENES

	Eukaryotes Prokaryotes Viruses
	Favorite organism code or category

KEGG MGENES

	Environmental Organismal
	Favorite samples

KEGG GENOME

	Favorite organism code or category

Microbial Reference Genes

	Ocean (OM-RGC) Human gut (IGC)
	Ocean (MATOU)

nr-nt (GenBank, EMBL and RefSeq)
     dbEST dbGSS HTGs dbSTS
     RefSeq
Ribosomal Databases
     SILVA (SSU, 16S/18S) SILVA (LSU, 23S/28S)
     PR2 (Protist Reference)
     RDP (Prokaryotic 16S) RDP (Fungal 28S)
EPD
Virus-Host DB Genes
     Genomes
Environmental Viral Genome

Scoring matrix:

(except for BLASTN)

Filter:

Output options:

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Optional parameters: (see manual for details)

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Alignment view:	(except for BLASTX)
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