| Family | Genus | Species |
|---|---|---|
| Amoebidae | 4 | 9 |
| Arcellidae | 3 | 32 |
| Centropyxidae | 1 | 5 |
| Cryptodifflugiidae | 1 | 4 |
| Cylindriflugiidae | 1 | 4 |
| Difflugiidae | 5 | 20 |
| Echinamoebidae | 1 | 11 |
| Flabellulidae | 4 | 42 |
| Hartmannellidae | 7 | 72 |
| Heleoperidae | 1 | 11 |
| Hyalospheniidae | 16 | 66 |
| Leptomyxidae | 1 | 12 |
| Lesquereusiidae | 1 | 4 |
| Microchlamyiidae | 2 | 4 |
| Microcoryciidae | 1 | 1 |
| Netzeliidae | 3 | 11 |
| Phryganellidae | 1 | 4 |
| Plagiopyxidae | 2 | 3 |
| Trigonopyxidae | 1 | 2 |