| Order | Family | Genus | Species |
|---|---|---|---|
| Eubodonida | 1 | 1 | 43 |
| Euglenales | 3 | 13 | 338 |
| Eutreptiales | 1 | 2 | 19 |
| Heteronematales | 4 | 11 | 42 |
| Neobodonida | 2 | 12 | 41 |
| Parabodonida | 0 | 4 | 26 |
| Petalomonadida | 2 | 4 | 17 |
| Rapazida | 1 | 1 | 1 |
| Rhabdomonadales | 2 | 6 | 28 |
| Symbiontida | 0 | 2 | 3 |
| Trypanosomatida | 1 | 25 | 1274 |