Affertcholeramvirus CTXphi

Scientific Name	Affertcholeramvirus CTXphi [TAX:141904]
Lineage	Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Affertcholeramvirus
Baltimore Group	II: ssDNA
Genome Type	Non-segmented
Genbank	GQ466608 Vibrio phage CTX strain IB1346 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), RstC (rstC), RstR (rstR), RstA (rstA), RstB (rstB), and RstC (rstC) genes, complete cds. GQ466609 Vibrio phage CTX strain IB1346 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ466610 Vibrio phage CTX strain IB1627 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), and RstC (rstC) genes, complete cds. GQ466612 Vibrio phage CTX strain IB1482 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ485644 Vibrio phage CTX strain B33 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ485645 Vibrio phage CTX strain MJ1236 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ485646 Vibrio phage CTX strain MG116926 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ485647 Vibrio phage CTX strain 12.02vp RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ485648 Vibrio phage CTX strain 07.95vp RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ485649 Vibrio phage CTX strain E1781 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ485650 Vibrio phage CTX strain IB4322 RstR (rstR), RstA (rstA), RstB (rstB), RstC (rstC), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ485651 Vibrio phage CTX strain IB4642 RstR (rstR), RstA (rstA), RstB (rstB), RstC (rstC), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GQ485652 Vibrio phage CTX strain 01.07vp RstR (rstR), RstA (rstA), RstB (rstB), RstC (rstC), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), hypothetical protein, Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. GU942563 Vibrio phage CTX chromosome I prophage, complete sequence. KF664566 Vibrio phage CTX RstR (rstR), RstA (rstA), RstB (rstB), RstC (rstC), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), OrfU (orfu), Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), and RstC (rstC) genes, complete cds. KF664567 Vibrio phage CTX plasmid pCTX-2 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), OrfU (orfu), Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), OrfU (orfu), Ace (ace), Zot (zot), CtxA (ctxA), and CtxB (ctxB) genes, complete cds. KF664568 Vibrio phage CTX isolate recombinant CTX-RS1 plasmid pCTX-1 RstR (rstR), RstA (rstA), RstB (rstB), Cep (cep), OrfU (orfu), Ace (ace), Zot (zot), CtxA (ctxA), CtxB (ctxB), RstR (rstR), RstA (rstA), RstB (rstB), and RstC (rstC) genes, complete cds. KJ619459 Vibrio phage CTX, complete genome. MF155889 Affertcholeramvirus CTXphi, complete genome.
DBLINKS	ViralZone: family

Known hosts (2)

Scientific Name	Vibrio cholerae [TAX:666]
Lineage	cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
Evidence	GenBank
Evidence	Literature
Reference	PMID: 20127474
Authors	Lee JH, Choi SY, Jeon YS, Lee HR, Kim EJ, Nguyen BM, Hien NT, Ansaruzzaman M, Islam MS, Bhuiyan NA, Niyogi SK, Sarkar BL, Nair GB, Kim DS, Lopez AL, Czerkinsky C, Clemens JD, Chun J, Kim DW
Title	Classification of hybrid and altered Vibrio cholerae strains by CTX prophage and RS1 element structure.
Journal	J Microbiol. 2009 Dec;47(6):783-8.
Comment	Strain: B33, MJ1236, 12.02VP, 07.95V, MG116926
Evidence	Literature
Reference	PMID: 24722374
Authors	Kim EJ, Lee D, Moon SH, Lee CH, Kim DW
Title	CTX prophages in Vibrio cholerae O1 strains.
Journal	J Microbiol Biotechnol. 2014 Jun 28;24(6):725-31.
Evidence	Literature
Reference	PMID: 25233006
Authors	Kim EJ, Lee D, Moon SH, Lee CH, Kim SJ, Lee JH, Kim JO, Song M, Das B, Clemens JD, Pape JW, Nair GB, Kim DW
Title	Molecular insights into the evolutionary pathway of Vibrio cholerae O1 atypical El Tor variants.
Journal	PLoS Pathog. 2014 Sep;10(9):e1004384.
DBLINKS	KEGG GENOME: T03389 T03828 T03829

Scientific Name	Vibrio cholerae O1 biovar El Tor [TAX:686]
Lineage	cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae
Evidence	GenBank
Evidence	Literature
Reference	PMID: 20007761
Authors	Choi SY, Lee JH, Kim EJ, Lee HR, Jeon YS, von Seidlein L, Deen J, Ansaruzzaman M, Lucas GMES, Barreto A, Songane FF, Mondlane C, Nair GB, Czerkinsky C, Clemens JD, Chun J, Kim DW
Title	Classical RS1 and environmental RS1 elements in Vibrio cholerae O1 El Tor strains harbouring a tandem repeat of CTX prophage: revisiting Mozambique in 2005.
Journal	J Med Microbiol. 2010 Mar;59(Pt 3):302-308.
DBLINKS	KEGG GENOME: T03827