Citrus sinensis

Citrus sinensis

Scientific Name	Citrus sinensis [TAX:2711]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
DBLINKS	KEGG GENOME: T02983

Known viruses (13)

Scientific Name	Citrus chlorotic spot virus [TAX:1980624]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Dichorhavirus; Dichorhavirus citri
RefSeq	NC_055208 Citrus chlorotic spot virus strain Trs1 segment RNA1, complete sequence. NC_055209 Citrus chlorotic spot virus strain Trs1 segment RNA2, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_055208 NC_055209 ICTV: 202306289 ViralZone: genus, family

Scientific Name	Citrus concave gum-associated virus [TAX:2024604]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Coguvirus; Coguvirus citri
RefSeq	NC_035454 Citrus concave gum-associated virus isolate CGW2 segment RNA2, complete sequence. NC_035759 Citrus concave gum-associated virus isolate CGW2 segment RNA1, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_035454 NC_035759 ICTV: 202306630 ViralZone: family

Scientific Name	Citrus dwarfing viroid [TAX:551523]
Lineage	Viruses; Pospiviroidae; Apscaviroid
RefSeq	NC_003264 Citrus dwarfing viroid, complete genome.
Evidence	Literature
Reference	Sieburth, P. J., Irey, M., Garnsey, S. M., & Owens, R. A. (2002). The use of RT-PCR in the Florida citrus viroid indexing program. In Proceedings of the Fifteenth Conference on International Organization of Citrus Virologists, Riverside, California (Vol. 15, pp. 230-238).
DBLINKS	KEGG BRITE: NC_003264 ICTV: 202304503 ViralZone: family

Scientific Name	Citrus gummy bark viroid [TAX:648750]
Lineage	Viruses; Pospiviroidae; Hostuviroid; Hop stunt viroid
GenBank	FJ984562 Citrus gummy bark viroid strain cachexia, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family

Scientific Name	Citrus leprosis virus C [TAX:347219]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Kitaviridae; Cilevirus; Cilevirus leprosis
RefSeq	NC_008169 Citrus leprosis virus C RNA-1, complete genome. NC_008170 Citrus leprosis virus C RNA-2, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_008169 NC_008170 ICTV: 202305345

Scientific Name	Citrus leprosis virus C2 [TAX:2052685]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Kitaviridae; Cilevirus; Cilevirus colombiaense
RefSeq	NC_038848 Citrus leprosis virus C2 isolate L147V1 segment RNA1, complete sequence. NC_038849 Citrus leprosis virus C2 isolate L147V1 segment RNA2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 23268581
Authors	Roy A, Choudhary N, Guillermo LM, Shao J, Govindarajulu A, Achor D, Wei G, Picton DD, Levy L, Nakhla MK, Hartung JS, Brlansky RH
Title	A novel virus of the genus Cilevirus causing symptoms similar to citrus leprosis.
Journal	Phytopathology. 2013 May;103(5):488-500.
DBLINKS	KEGG BRITE: NC_038848 NC_038849 ICTV: 202305346

Scientific Name	Citrus leprosis virus N [TAX:1956177]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Dichorhavirus; Dichorhavirus leprosis
RefSeq	NC_052230 Citrus leprosis virus N strain ibi1 segment RNA1, complete sequence. NC_052231 Citrus leprosis virus N strain ibi1 segment RNA2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28398876
Authors	Ramos-González PL, Chabi-Jesus C, Guerra-Peraza O, Tassi AD, Kitajima EW, Harakava R, Salaroli RB, Freitas-Astúa J
Title	Citrus leprosis virus N: A New Dichorhavirus Causing Citrus Leprosis Disease.
Journal	Phytopathology. 2017 Aug;107(8):963-976.
DBLINKS	KEGG BRITE: NC_052230 NC_052231 ICTV: 202306287 ViralZone: genus, family

Scientific Name	Citrus sudden death-associated virus [TAX:312008]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Tymoviridae; Marafivirus; Marafivirus citri
RefSeq	NC_006950 Citrus sudden death-associated virus, complete genome.
Evidence	Literature
Reference	PMID: 15709023
Authors	Maccheroni W, Alegria MC, Greggio CC, Piazza JP, Kamla RF, Zacharias PR, Bar-Joseph M, Kitajima EW, Assumpção LC, Camarotte G, Cardozo J, Casagrande EC, Ferrari F, Franco SF, Giachetto PF, Girasol A, Jordão H Jr, Silva VH, Souza LC, Aguilar-Vildoso CI, Zanca AS, Arruda P, Kitajima JP, Reinach FC, Ferro JA, da Silva AC
Title	Identification and genomic characterization of a new virus (Tymoviridae family) associated with citrus sudden death disease.
Journal	J Virol. 2005 Mar;79(5):3028-37.
DBLINKS	KEGG BRITE: NC_006950 ICTV: 202302348

Scientific Name	Citrus vein enation virus [TAX:1301220]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Enamovirus
RefSeq	NC_021564 Citrus vein enation virus, isolate VE-1, complete genome.
Evidence	Literature
Reference	PMID: 23718835
Authors	Vives MC, Velázquez K, Pina JA, Moreno P, Guerri J, Navarro L
Title	Identification of a new enamovirus associated with citrus vein enation disease by deep sequencing of small RNAs.
Journal	Phytopathology. 2013 Oct;103(10):1077-86.
DBLINKS	KEGG BRITE: NC_021564 ICTV: 202306590 ViralZone: family, genus

Scientific Name	Citrus viroid Ia [TAX:72705]
Lineage	Viruses; Pospiviroidae; Apscaviroid; Citrus bent leaf viroid
GenBank	AF040721 Citrus viroid Ia clone 17, complete genome.
Evidence	Literature
Reference	Semancik, J. S., Rakowski, A. G., Bash, J. A., & Gumpf, D. J. (1997). Application of selected viroids for dwarfing and enhancement of production of ‘Valencia’orange. Journal of Horticultural Science, 72(4), 563-570.
DBLINKS	ViralZone: family

Scientific Name	Citrus viroid IIIb [TAX:41862]
Lineage	Viruses; Pospiviroidae; Apscaviroid; Citrus dwarfing viroid
GenBank	AF184148 Citrus viroid IIIb complete genome.
Evidence	Literature
Reference	Semancik, J. S., Rakowski, A. G., Bash, J. A., & Gumpf, D. J. (1997). Application of selected viroids for dwarfing and enhancement of production of ‘Valencia’orange. Journal of Horticultural Science, 72(4), 563-570.
DBLINKS	ViralZone: family

Scientific Name	Citrus virus A [TAX:2484986]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Coguvirus; Coguvirus eburi
RefSeq	NC_078103 Citrus virus A isolate W4 segment RNA1, complete sequence. NC_078104 Citrus virus A isolate W4 segment RNA2, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_078103 NC_078104 ICTV: 202307130 ViralZone: family

Scientific Name	Citrus yellow mosaic virus [TAX:174178]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus tessellocitri
RefSeq	NC_003382 Citrus yellow mosaic virus, complete genome.
Evidence	Literature
Reference	PMID: 11562547
Authors	Huang Q, Hartung JS
Title	Cloning and sequence analysis of an infectious clone of Citrus yellow mosaic virus that can infect sweet orange via Agrobacterium-mediated inoculation.
Journal	J Gen Virol. 2001 Oct;82(Pt 10):2549-58.
Comment	sweet orange, Citrus sinensis
DBLINKS	KEGG BRITE: NC_003382 ICTV: 202302834 ViralZone: family, genus