Theobroma cacao

Theobroma cacao

Scientific Name	Theobroma cacao [TAX:3641]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
DBLINKS	KEGG GENOME: T02994

Known viruses (15)

Scientific Name	Cacao bacilliform Sri Lanka virus [TAX:2056878]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus theobromae
RefSeq	NC_040809 Cacao Bacilliform SriLanka Virus isolate A, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040809 ICTV: 202306647 ViralZone: genus, family

Scientific Name	Cacao mild mosaic virus [TAX:1940252]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus tessellotheobromae
RefSeq	NC_033738 Cacao mild mosaic virus isolate SCA6, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_033738 ICTV: 202305761 ViralZone: genus, family

Scientific Name	Cacao swollen shoot CD virus [TAX:1960255]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus alphainflatheobromae
RefSeq	NC_038378 Cacao swollen shoot CD virus isolate CI152-09, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038378 ICTV: 202302830 ViralZone: genus, family

Scientific Name	Cacao swollen shoot CE virus [TAX:2056879]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus betainflatheobromae
RefSeq	NC_040692 Cacao swollen shoot CE virus isolate GWR198E-13, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 29052506
Authors	Chingandu N, Kouakou K, Aka R, Ameyaw G, Gutierrez OA, Herrmann HW, Brown JK
Title	The proposed new species, cacao red vein virus, and three previously recognized badnavirus species are associated with cacao swollen shoot disease.
Journal	Virol J. 2017 Oct 19;14(1):199.
DBLINKS	KEGG BRITE: NC_040692 ICTV: 202306643 ViralZone: genus, family

Scientific Name	Cacao swollen shoot Ghana J virus [TAX:2056880]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; unclassified Badnavirus
RefSeq	NC_040807 Cacao swollen shoot Ghana J virus isolate GWR198J-13, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 29169831
Authors	Muller E, Ravel S, Agret C, Abrokwah F, Dzahini-Obiatey H, Galyuon I, Kouakou K, Jeyaseelan EC, Allainguillaume J, Wetten A
Title	Next generation sequencing elucidates cacao badnavirus diversity and reveals the existence of more than ten viral species.
Journal	Virus Res. 2018 Jan 15;244:235-251.
DBLINKS	KEGG BRITE: NC_040807 ViralZone: genus, family

Scientific Name	Cacao swollen shoot Ghana K virus [TAX:2056881]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; unclassified Badnavirus
RefSeq	NC_040808 Cacao swollen shoot Ghana K virus isolate GWR3-14, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040808 ViralZone: genus, family

Scientific Name	Cacao swollen shoot Ghana L virus [TAX:2056882]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; unclassified Badnavirus
RefSeq	NC_040552 Cacao swollen shoot Ghana L virus isolate GCR329-14, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040552 ViralZone: genus, family

Scientific Name	Cacao swollen shoot Ghana M virus [TAX:2056883]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus gammainflatheobromae
RefSeq	NC_043534 Cacao swollen shoot Ghana M virus isolate Gha57-15, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_043534 ICTV: 202306644 ViralZone: genus, family

Scientific Name	Cacao swollen shoot Ghana N virus [TAX:2056884]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus deltainflatheobromae
RefSeq	NC_040622 Cacao swollen shoot Ghana N virus isolate Gha63-15, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040622 ICTV: 202306645 ViralZone: genus, family

Scientific Name	Cacao swollen shoot Ghana Q virus [TAX:2056885]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus epsiloninflatheobromae
RefSeq	NC_043535 Cacao swollen shoot Ghana Q virus isolate Gha40-15, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_043535 ViralZone: genus, family

Scientific Name	Cacao swollen shoot Ghana R virus [TAX:2056886]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; unclassified Badnavirus
RefSeq	NC_040693 Cacao swollen shoot Ghana R virus isolate Gha53-15, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040693 ICTV: 202306646 ViralZone: genus, family

Scientific Name	Cacao swollen shoot Togo A virus [TAX:1960254]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus zetainflatheobromae
RefSeq	NC_038379 Cacao swollen shoot Togo A virus isolate Hebei, complete genome. NC_076048 Cacao swollen shoot Togo A virus complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038379 NC_076048 ICTV: 202302831 ViralZone: genus, family

Scientific Name	Cacao swollen shoot Togo B virus [TAX:2560363]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus etainflatheobromae
GenBank	L14546 Cacao swollen shoot Togo B virus, complete genome.
DBLINKS	ViralZone: genus, family

Scientific Name	Cacao swollen shoot virus [TAX:31559]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus
RefSeq	NC_001574 Cacao swollen shoot virus, complete genome.
Evidence	Literature
Reference	PMID: 7690503
Authors	Hagen LS, Jacquemond M, Lepingle A, Lot H, Tepfer M
Title	Nucleotide sequence and genomic organization of cacao swollen shoot virus.
Journal	Virology. 1993 Oct;196(2):619-28.
DBLINKS	KEGG BRITE: NC_001574 KEGG GENOME: T40218 ICTV: 202302832 ViralZone: genus, family Plant Viruses Online: 129 Descriptions of Plant Viruses: 10

Scientific Name	Cacao yellow vein banding virus [TAX:2169726]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus venatheobromae
RefSeq	NC_033739 Cacao yellow vein-banding virus isolate ICS27, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_033739 ICTV: 202305762 ViralZone: genus, family