Arabidopsis thaliana

Arabidopsis thaliana

Scientific Name	Arabidopsis thaliana [TAX:3702]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
DBLINKS	KEGG GENOME: T00041

Known viruses (11)

Scientific Name	Arabidopsis latent virus 1 [TAX:2570606]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Comovirinae; Comovirus; Comovirus arabidopsis
RefSeq	NC_078590 Arabidopsis latent virus-1 segment RNA1, complete sequence. NC_078591 Arabidopsis latent virus-1 segment RNA2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 36073550
Authors	Verhoeven A, Kloth KJ, Kupczok A, Oymans GH, Damen J, Rijnsburger K, Jiang Z, Deelen C, Sasidharan R, van Zanten M, van der Vlugt RAA
Title	Arabidopsis latent virus 1, a comovirus widely spread in Arabidopsis thaliana collections.
Journal	New Phytol. 2023 Feb;237(4):1146-1153.
DBLINKS	KEGG BRITE: NC_078590 NC_078591 ICTV: 202313819 ViralZone: genus, family

Scientific Name	Bean yellow dwarf virus [TAX:57119]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus; Mastrevirus cicerparvi
RefSeq	NC_003493 Bean yellow dwarf virus putative genes V1, V2, C1, C1:C2.
Evidence	Literature
Reference	PMID: 9267015
Authors	Liu L, van Tonder T, Pietersen G, Davies JW, Stanley J
Title	Molecular characterization of a subgroup I geminivirus from a legume in South Africa.
Journal	J Gen Virol. 1997 Aug;78 ( Pt 8):2113-7.
DBLINKS	KEGG BRITE: NC_003493 ICTV: 202303515 ViralZone: family, genus

Scientific Name	Beet curly top Iran virus-[Siv] [TAX:1277443]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Becurtovirus; Becurtovirus betae; Beet curly top Iran virus
GenBank	JX082259 Beet curly top Iran virus-[Siv], complete genome.
Evidence	Literature
Reference	The unconventional geminivirus Beet curly top Iran virus: satisfying Koch's postulates and determining vector and host range, R Soleimani, S Matic, H Taheri… - Annals of Applied …, 2013 - Wiley Online Library
DBLINKS	ViralZone: genus, family

Scientific Name	Cardamine chlorotic fleck virus [TAX:31711]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; unclassified Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Betacarmovirus; Betacarmovirus cardaminis
RefSeq	NC_001600 Cardamine chlorotic fleck virus, complete genome.
Evidence	Literature
Reference	PMID: 8376969
Authors	Skotnicki ML, Mackenzie AM, Torronen M, Gibbs AJ
Title	The genomic sequence of cardamine chlorotic fleck carmovirus.
Journal	J Gen Virol. 1993 Sep;74 ( Pt 9):1933-7.
Comment	Arabidopsis thaliana
DBLINKS	KEGG BRITE: NC_001600 ICTV: 202305215 ViralZone: family, genus

Scientific Name	Cassia yellow blotch virus [TAX:300879]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Bromovirus; Bromovirus CYBV
RefSeq	NC_006999 Cassia yellow blotch virus RNA1, complete sequence. NC_007000 Cassia yellow blotch virus RNA2, complete sequence. NC_007001 Cassia yellow blotch virus RNA3, complete sequence.
Evidence	Literature
Reference	PMID: 15770356
Authors	Iwahashi F, Fujisaki K, Kaido M, Okuno T, Mise K
Title	Synthesis of infectious in vitro transcripts from Cassia yellow blotch bromovirus cDNA clones and a reassortment analysis with other bromoviruses in protoplasts.
Journal	Arch Virol. 2005 Jul;150(7):1301-14.
Comment	Arabidopsis thaliana
DBLINKS	KEGG BRITE: NC_006999 NC_007000 NC_007001 ICTV: 202302767 ViralZone: family, genus Plant Viruses Online: 183 Descriptions of Plant Viruses: 334

Scientific Name	Cauliflower mosaic virus [TAX:10641]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus; Caulimovirus tessellobrassicae
RefSeq	NC_001497 Cauliflower mosaic virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001497 KEGG GENOME: T40223 ICTV: 202302862 ViralZone: genus, family Descriptions of Plant Viruses: 243, 24

Scientific Name	Citrus leprosis virus N [TAX:1956177]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Dichorhavirus; Dichorhavirus leprosis
RefSeq	NC_052230 Citrus leprosis virus N strain ibi1 segment RNA1, complete sequence. NC_052231 Citrus leprosis virus N strain ibi1 segment RNA2, complete sequence.
Evidence	Literature
Reference	PMID: 28398876
Authors	Ramos-González PL, Chabi-Jesus C, Guerra-Peraza O, Tassi AD, Kitajima EW, Harakava R, Salaroli RB, Freitas-Astúa J
Title	Citrus leprosis virus N: A New Dichorhavirus Causing Citrus Leprosis Disease.
Journal	Phytopathology. 2017 Aug;107(8):963-976.
DBLINKS	KEGG BRITE: NC_052230 NC_052231 ICTV: 202306287 ViralZone: family, genus

Scientific Name	Cleome leaf crumple alphasatellite [TAX:2169824]
Lineage	Viruses; Viruses incertae sedis; Alphasatellitidae; Geminialphasatellitinae; Clecrusatellite; Clecrusatellite cleomis
RefSeq	NC_014646 Cleome leaf crumple virus associated DNA 1, complete genome.
Evidence	Literature
Reference	PMID: 20553707
Authors	Paprotka T, Metzler V, Jeske H
Title	The first DNA 1-like alpha satellites in association with New World begomoviruses in natural infections.
Journal	Virology. 2010 Sep 1;404(2):148-57.
DBLINKS	KEGG BRITE: NC_014646 ICTV: 202305666 ViralZone: family

Scientific Name	Melandrium yellow fleck virus [TAX:545259]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Bromovirus; Bromovirus MYFV
RefSeq	NC_013266 Melandrium yellow fleck virus genomic RNA, segment RNA1, complete sequence, strain: KU1. NC_013267 Melandrium yellow fleck virus genomic RNA, segment RNA2, complete sequence, strain: KU1. NC_013268 Melandrium yellow fleck virus genomic RNA, segment RNA3, complete sequence, strain: KU1.
Evidence	Literature
Reference	PMID: 19597694
Authors	Narabayashi T, Iwahashi F, Kaido M, Okuno T, Mise K
Title	Melandrium yellow fleck bromovirus infects Arabidopsis thaliana and has genomic RNA sequence characteristics that are unique among bromoviruses.
Journal	Arch Virol. 2009;154(9):1381-9.
DBLINKS	KEGG BRITE: NC_013266 NC_013267 NC_013268 ICTV: 202302769 ViralZone: family, genus Descriptions of Plant Viruses: 236

Scientific Name	Spring beauty latent virus [TAX:188141]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Bromovirus; Bromovirus SBLV
RefSeq	NC_004120 Spring beauty latent virus RNA 1, complete sequence. NC_004121 Spring beauty latent virus RNA 2, complete sequence. NC_004122 Spring beauty latent virus RNA 3, complete sequence.
Evidence	Literature
Reference	PMID: 12536302
Authors	Fujisaki K, Hagihara F, Kaido M, Mise K, Okuno T
Title	Complete nucleotide sequence of spring beauty latent virus, a bromovirus infectious to Arabidopsis thaliana.
Journal	Arch Virol. 2003 Jan;148(1):165-75.
DBLINKS	KEGG BRITE: NC_004120 NC_004121 NC_004122 ICTV: 202302770 ViralZone: family, genus

Scientific Name	Turnip crinkle virus satellite RNA [TAX:196094]
Lineage	Viruses; unclassified viruses; unclassified satellites; RNA satellites; Single stranded RNA satellites; Small linear single stranded RNA satellites
RefSeq	NC_004033 Turnip crinkle virus satellite RNA, complete genome.
Evidence	Literature
Reference	PMID: 3181135
Authors	Simon AE, Engel H, Johnson RP, Howell SH
Title	Identification of regions affecting virulence, RNA processing and infectivity in the virulent satellite of turnip crinkle virus.
Journal	EMBO J. 1988 Sep;7(9):2645-51.
Evidence	Literature
Reference	PMID: 31043494
Authors	Zheng X, Fahlgren N, Abbasi A, Berry JC, Carrington JC
Title	Antiviral ARGONAUTEs Against <i>Turnip Crinkle Virus</i> Revealed by Image-Based Trait Analysis.
Journal	Plant Physiol. 2019 Jul;180(3):1418-1435.
DBLINKS	KEGG BRITE: NC_004033