Medicago sativa

Medicago sativa

Scientific Name	Medicago sativa [TAX:3879]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago

Known viruses (15)

Scientific Name	Alfalfa dwarf virus [TAX:998864]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Cytorhabdovirus medicagonis
RefSeq	NC_028237 Alfalfa dwarf virus isolate Manfredi, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26004251
Authors	Bejerman N, Giolitti F, de Breuil S, Trucco V, Nome C, Lenardon S, Dietzgen RG
Title	Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses.
Journal	Virology. 2015 Sep;483:275-83.
DBLINKS	KEGG BRITE: NC_028237 ICTV: 202301667 ViralZone: genus, family

Scientific Name	Alfalfa latent virus [TAX:165250]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus; Pea streak virus
RefSeq	NC_026616 Alfalfa latent virus isolate ATCC PV-264 RNA-dependent RNA polymerase, TGB1, TGB2, TGB3, and coat protein genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_026616 ICTV: 202302265 Plant Viruses Online: 577 Descriptions of Plant Viruses: 211

Scientific Name	Alfalfa virus F [TAX:2170538]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Tymoviridae; Marafivirus; Marafivirus medicagonis
RefSeq	NC_040565 Alfalfa virus F isolate SM-1_C50, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 30180217
Authors	Nemchinov LG, François S, Roumagnac P, Ogliastro M, Hammond RW, Mollov DS, Filloux D
Title	Characterization of alfalfa virus F, a new member of the genus Marafivirus.
Journal	PLoS One. 2018;13(9):e0203477.
DBLINKS	KEGG BRITE: NC_040565 ICTV: 202309793

Scientific Name	Allexivirus sigmamedicagonis [TAX:1985968]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Allexivirus
RefSeq	NC_034622 Alfalfa virus S isolate 98.3A, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28558046
Authors	Nemchinov LG, Grinstead SC, Mollov DS
Title	Alfalfa virus S, a new species in the family Alphaflexiviridae.
Journal	PLoS One. 2017;12(5):e0178222.
DBLINKS	KEGG BRITE: NC_034622 ICTV: 202305631

Scientific Name	Bean leafroll virus [TAX:12041]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; Luteovirus phaseoli
RefSeq	NC_003369 Bean leafroll virus, complete genome.
Evidence	UniProt
Evidence	Literature
Reference	PMID: 12075101
Authors	Domier LL, McCoppin NK, Larsen RC, D'Arcy CJ
Title	Nucleotide sequence shows that Bean leafroll virus has a Luteovirus-like genome organization.
Journal	J Gen Virol. 2002 Jul;83(Pt 7):1791-1798.
	Bean leafroll virus (BLRV) in Argentina: molecular characterization and detection in alfalfa fields V Trucco, S De Breuil, N Bejerman, S Lenardon… - European Journal of …, 2016 - Springer Detection and Characterization of Chickpea Chlorotic Stunt Virus in Syria, NY Asaad, SG Kumari, AA Haj‐Kassem… - Journal of …, 2009 - Wiley Online Library
DBLINKS	KEGG BRITE: NC_003369 KEGG GENOME: T40234 ICTV: 202303770

Scientific Name	Capulavirus medicagonis [TAX:1306546]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Capulavirus
RefSeq	NC_027714 Alfalfa leaf curl virus isolate 44-1E, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_027714 ICTV: 202303498 ViralZone: genus, family

Scientific Name	Clover yellow mosaic virus [TAX:12177]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus
RefSeq	NC_001753 Clover yellow mosaic virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001753 KEGG GENOME: T40280 ICTV: 202302201 Descriptions of Plant Viruses: 111

Scientific Name	Enamovirus AEV [TAX:1770265]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Enamovirus
RefSeq	NC_029993 Alfalfa enamovirus-1 isolate Manfredi, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 27068164
Authors	Bejerman N, Giolitti F, Trucco V, de Breuil S, Dietzgen RG, Lenardon S
Title	Complete genome sequence of a new enamovirus from Argentina infecting alfalfa plants showing dwarfism symptoms.
Journal	Arch Virol. 2016 Jul;161(7):2029-32.
DBLINKS	KEGG BRITE: NC_029993 ICTV: 202303762 ViralZone: family, genus

Scientific Name	Gloriosa stripe mosaic virus [TAX:12201]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus gloriosae
RefSeq	NC_038562 Gloriosa stripe mosaic virus isolate CB polyprotein gene, complete cds.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_038562 ICTV: 202304615 ViralZone: genus, family Plant Viruses Online: 076

Scientific Name	Groundnut rosette virus [TAX:47740]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Calvusvirinae; Umbravirus; Umbravirus arachidis
RefSeq	NC_003603 Groundnut rosette virus complete genome, strain MC1.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003603 ICTV: 202305270 Descriptions of Plant Viruses: 355

Scientific Name	Lucerne transient streak virus [TAX:12470]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Sobemovirus
RefSeq	NC_001696 Lucerne transient streak virus isolate LTSV-Can, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_001696 KEGG GENOME: T40235 ICTV: 202305376 ViralZone: genus, family Descriptions of Plant Viruses: 224

Scientific Name	Medicago sativa alphapartitivirus 1 [TAX:2043550]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Alphapartitivirus; unclassified Alphapartitivirus
RefSeq	NC_040456 Medicago sativa alphapartitivirus 1 isolate LN14 coat protein gene, complete cds. NC_040457 Medicago sativa alphapartitivirus 1 isolate LN14 RNA-dependent RNA polymerase gene, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28974471
Authors	Kim H, Park D, Hahn Y
Title	Identification of novel RNA viruses in alfalfa (Medicago sativa): an Alphapartitivirus, a Deltapartitivirus, and a Marafivirus.
Journal	Gene. 2018 Jan 5;638:7-12.
DBLINKS	KEGG BRITE: NC_040456 NC_040457 ViralZone: family, genus

Scientific Name	Medicago sativa amalgavirus 1 [TAX:2069326]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Amalgaviridae; unclassified Amalgaviridae
RefSeq	NC_040591 Medicago sativa amalgavirus 1 strain MsAV1-Maverick genomic sequence.
DBLINKS	KEGG BRITE: NC_040591 ViralZone: family

Scientific Name	Pea streak virus [TAX:157777]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus
RefSeq	NC_027527 Pea streak virus isolate VRS-541, complete genome.
Evidence	Literature
Reference	PMID: 26092422
Authors	Su L, Li Z, Bernardy M, Wiersma PA, Cheng Z, Xiang Y
Title	The complete nucleotide sequence and genome organization of pea streak virus (genus Carlavirus).
Journal	Arch Virol. 2015 Oct;160(10):2651-4.
Comment	alfalfa (Medicago sativa)
DBLINKS	KEGG BRITE: NC_027527 KEGG GENOME: T40287 Descriptions of Plant Viruses: 112

Scientific Name	Red clover necrotic mosaic virus [TAX:12267]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Dianthovirus; Dianthovirus trifolii
RefSeq	NC_003756 Red clover necrotic mosaic virus RNA-1, complete sequence. NC_003775 Red clover necrotic mosaic virus RNA 2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003756 NC_003775 ICTV: 202305225 Descriptions of Plant Viruses: 181