Daucus carota

Daucus carota

Scientific Name	Daucus carota [TAX:4039]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus; Daucus sect. Daucus

Known viruses (17)

Scientific Name	Carrot Ch virus 1 [TAX:1425363]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Trivirinae; Chordovirus; Chordovirus unicarotae
RefSeq	NC_025469 Carrot betaflexivirus 1 isolate CBV-1_S20 ORF1, ORF2, and ORF3 genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025469 ICTV: 202302304 ViralZone: family, genus

Scientific Name	Carrot Ch virus 2 [TAX:1425362]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Trivirinae; Chordovirus; Chordovirus duocarotae
RefSeq	NC_025468 Carrot betaflexivirus 2 isolate CBV-2_S15 ORF1, ORF2, and ORF3 genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025468 ICTV: 202302305 ViralZone: family, genus

Scientific Name	Carrot closterovirus [TAX:1425365]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; unclassified Closteroviridae
RefSeq	NC_076503 Carrot closterovirus isolate CUCV_S8, partial genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076503 ICTV: 202308910 ViralZone: family

Scientific Name	Carrot cryptic virus [TAX:589918]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Alphapartitivirus; Alphapartitivirus carotae
RefSeq	NC_038823 Carrot cryptic virus segment RNA 2 coat protein gene, complete cds. NC_038824 Carrot cryptic virus segment RNA 1 RNA-dependent RNA polymerase gene, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 19165417
Authors	Willenborg J, Menzel W, Vetten HJ, Maiss E
Title	Molecular characterization of two alphacryptovirus dsRNAs isolated from Daucus carota.
Journal	Arch Virol. 2009;154(3):541-3.
DBLINKS	KEGG BRITE: NC_038823 NC_038824 ICTV: 202304142 ViralZone: genus, family

Scientific Name	Carrot mottle mimic virus [TAX:47736]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; unclassified Tolucaviricetes; Tolivirales; Tombusviridae; Calvusvirinae; Umbravirus; Umbravirus carotae
RefSeq	NC_001726 Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome.
Evidence	Literature
Reference	PMID: 8862426
Authors	Gibbs MJ, Cooper JI, Waterhouse PM
Title	The genome organization and affinities of an Australian isolate of carrot mottle umbravirus.
Journal	Virology. 1996 Oct 1;224(1):310-3.
DBLINKS	KEGG BRITE: NC_001726 ICTV: 202305267 ViralZone: genus, family

Scientific Name	Carrot mottle virus [TAX:68033]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; unclassified Tolucaviricetes; Tolivirales; Tombusviridae; Calvusvirinae; Umbravirus; Umbravirus maculacarotae
RefSeq	NC_011515 Carrot mottle virus isolate Weddel, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_011515 KEGG GENOME: T40248 ICTV: 202305268 ViralZone: genus, family Descriptions of Plant Viruses: 137

Scientific Name	Carrot mottle virus satellite RNA [TAX:570950]
Lineage	Viruses; unclassified viruses; unclassified satellites; RNA satellites
RefSeq	NC_030649 Carrot mottle virus satellite RNA, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 19020967
Authors	Menzel W, Maiss E, Vetten HJ
Title	Nucleotide sequence of a satellite RNA associated with carrot motley dwarf in parsley and carrot.
Journal	Virus Genes. 2009 Feb;38(1):187-8.
DBLINKS	KEGG BRITE: NC_030649

Scientific Name	Carrot necrotic dieback virus [TAX:680112]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Sequivirus; Sequivirus carotae
RefSeq	NC_038320 Carrot necrotic dieback virus strain Anthriscus, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 18982244
Authors	Menzel W, Vetten HJ
Title	Complete nucleotide sequence of an isolate of the Anthriscus strain of Parsnip yellow fleck virus.
Journal	Arch Virol. 2008;153(11):2173-5.
DBLINKS	KEGG BRITE: NC_038320 ICTV: 202302143 ViralZone: family, genus

Scientific Name	Carrot red leaf luteovirus associated RNA [TAX:67962]
Lineage	Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; unclassified ssRNA positive-strand viruses
RefSeq	NC_003871 Carrot red leaf luteovirus associated RNA clone a25 putative RNA dependent RNA polymerase, complete cds.
Evidence	Literature
Reference	PMID: 18944986
Authors	Watson MT, Tian T, Estabrook E, Falk BW
Title	A Small RNA Resembling the Beet Western Yellows Luteovirus ST9-Associated RNA Is a Component of the California Carrot Motley Dwarf Complex.
Journal	Phytopathology. 1998 Feb;88(2):164-70.
DBLINKS	KEGG BRITE: NC_003871

Scientific Name	Carrot torradovirus 1 [TAX:1425364]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Torradovirus; Torradovirus carotae
RefSeq	NC_025479 Carrot torradovirus 1, RNA1, complete sequence. NC_025480 Carrot torradovirus 1, RNA2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 25365290
Authors	Adams IP, Skelton A, Macarthur R, Hodges T, Hinds H, Flint L, Nath PD, Boonham N, Fox A
Title	Carrot yellow leaf virus is associated with carrot internal necrosis.
Journal	PLoS One. 2014;9(11):e109125.
DBLINKS	KEGG BRITE: NC_025479 NC_025480 ICTV: 202302147 ViralZone: genus, family

Scientific Name	Carrot virus Y [TAX:114923]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus carotae
GenBank	LC511903 Carrot virus Y Vic Orig RNA, complete genome.
Evidence	GenBank
Evidence	Literature
Reference	PMID: 32273353
Authors	Kinoti WM, Moran JR, Gambley C, Rodoni BC, Constable FE
Title	Genome Characterization of Two <i>Carrot Virus Y</i> Isolates from Australia.
Journal	Microbiol Resour Announc. 2020 Apr 9;9(15).
Comment	Vecter: Aphidoidea
DBLINKS	ViralZone: genus, family

Scientific Name	Carrot yellow leaf virus [TAX:656190]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Closterovirus; Closterovirus flavicarotae
RefSeq	NC_013007 Carrot yellow leaf virus, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_013007 KEGG GENOME: T40250 ICTV: 202302995 ViralZone: genus, family

Scientific Name	Celery mosaic virus [TAX:112436]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus apiumtessellati
RefSeq	NC_015393 Celery mosaic virus, complete genome.
Evidence	Literature
Reference	Pemberton, A. W., & Frost, R. R. (1974). Celery mosaic virus in England. Plant Pathology, 23(1), 20-24.
DBLINKS	KEGG BRITE: NC_015393 KEGG GENOME: T40307 ICTV: 202304592 ViralZone: genus, family Descriptions of Plant Viruses: 50

Scientific Name	Clover yellow vein virus [TAX:12198]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Potyvirus; Potyvirus trifolii
RefSeq	NC_003536 Clover yellow vein virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003536 KEGG GENOME: T40163 ICTV: 202304598 ViralZone: genus, family Descriptions of Plant Viruses: 131

Scientific Name	Lettuce infectious yellows virus [TAX:31713]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus; Crinivirus lactucaflavi
RefSeq	NC_003617 Lettuce infectious yellows virus RNA 1, complete genome. NC_003618 Lettuce infectious yellows virus RNA 2, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003617 NC_003618 KEGG GENOME: T40216 ICTV: 202303012 ViralZone: family, genus Descriptions of Plant Viruses: 369

Scientific Name	Parsnip yellow fleck virus [TAX:12777]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Sequivirus; Sequivirus pastinacae
RefSeq	NC_003628 Parsnip yellow fleck virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003628 ICTV: 202302145 ViralZone: family, genus Descriptions of Plant Viruses: 129, 394

Scientific Name	Pedilanthus leaf curl alphasatellite [TAX:2169842]
Lineage	Viruses; Viruses incertae sedis; Alphasatellitidae; Geminialphasatellitinae; Colecusatellite; Colecusatellite pedilanthi
RefSeq	NC_033335 Pedilanthus leaf curl virus alphasatellite, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_033335 ICTV: 202305689 ViralZone: family