Oryza sativa

Oryza sativa

Scientific Name	Oryza sativa [TAX:4530]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Known viruses (23)

Scientific Name	Barley yellow dwarf virus MAV [TAX:2169984]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; Luteovirus mavhordei
RefSeq	NC_003680 Barley yellow dwarf virus - MAV, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003680 ICTV: 202303767

Scientific Name	Barley yellow dwarf virus-PAV [TAX:2169986]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; Luteovirus pavhordei
RefSeq	NC_004750 Barley yellow dwarf virus - PAV, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_004750 ICTV: 202303769

Scientific Name	Cereal yellow dwarf virus RPV [TAX:2170100]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus
RefSeq	NC_004751 Cereal yellow dwarf virus-RPV, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_004751 ICTV: 202303779 ViralZone: genus, family

Scientific Name	Maize streak virus - E[Pat] [TAX:268331]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus; Maize streak virus
GenBank	AF329888 Maize streak virus - E[Pat] isolate MSV-Pat, complete genome.
Evidence	UniProt
DBLINKS	ViralZone: genus, family

Scientific Name	Maize streak virus - [Raw] [TAX:268343]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus; Maize streak virus
GenBank	AF329889 Maize streak virus - [Raw], complete genome.
Evidence	UniProt
DBLINKS	ICTV: 202303525 ViralZone: genus, family

Scientific Name	Oryza sativa alphaendornavirus [TAX:362693]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Endornaviridae; Alphaendornavirus
RefSeq	NC_007647 Oryza sativa endornavirus, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_007647 ICTV: 202303055

Scientific Name	Rice black streaked dwarf virus [TAX:10990]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Fijivirus
RefSeq	NC_003728 Rice black streaked dwarf virus segment 3, complete sequence. NC_003729 Rice black streaked dwarf virus segment 1, complete sequence. NC_003730 Rice black streaked dwarf virus segment 7, complete sequence. NC_003731 Rice black streaked dwarf virus segment 9, complete sequence. NC_003732 Rice black streaked dwarf virus segment 8, complete sequence. NC_003733 Rice black streaked dwarf virus segment 10, complete sequence. NC_003734 Rice black streaked dwarf virus segment 2, complete sequence. NC_003735 Rice black streaked dwarf virus segment 4, complete sequence. NC_003736 Rice black streaked dwarf virus segment 5, complete sequence. NC_003737 Rice black streaked dwarf virus segment 6, complete sequence.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003728 NC_003729 NC_003730 NC_003731 NC_003732 NC_003733 NC_003734 NC_003735 NC_003736 NC_003737 KEGG GENOME: T40175 ICTV: 202304957 ViralZone: family, genus Descriptions of Plant Viruses: 135

Scientific Name	Rice dwarf virus [TAX:10991]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Phytoreovirus
RefSeq	NC_003760 Rice dwarf virus segment 7, complete sequence. NC_003761 Rice dwarf virus segment 4, complete sequence. NC_003762 Rice dwarf virus segment 5, complete sequence. NC_003763 Rice dwarf virus segment 6, complete sequence. NC_003764 Rice dwarf virus segment 8, complete sequence. NC_003765 Rice dwarf virus segment 9, complete sequence. NC_003766 Rice dwarf virus segment 10, complete sequence. NC_003767 Rice dwarf virus segment 11, complete sequence. NC_003768 Rice dwarf virus segment 12, complete sequence. NC_003772 Rice dwarf virus segment 3, complete sequence. NC_003773 Rice dwarf virus segment 1, complete sequence. NC_003774 Rice dwarf virus segment 2, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003760 NC_003761 NC_003762 NC_003763 NC_003764 NC_003765 NC_003766 NC_003767 NC_003768 NC_003772 NC_003773 NC_003774 KEGG GENOME: T40204 ICTV: 202304901 ViralZone: family, genus Descriptions of Plant Viruses: 102

Scientific Name	Rice gall dwarf virus [TAX:10986]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Phytoreovirus
RefSeq	NC_009241 Rice gall dwarf virus segment S8, complete sequence. NC_009242 Rice gall dwarf virus segment S10, complete sequence. NC_009243 Rice gall dwarf virus segment S3, complete sequence. NC_009244 Rice gall dwarf virus segment S2, complete sequence. NC_009245 Rice gall dwarf virus segment S11, complete sequence. NC_009246 Rice gall dwarf virus segment S9, complete sequence. NC_009247 Rice gall dwarf virus segment S5, complete sequence. NC_009248 Rice gall dwarf virus segment S1, complete sequence. NC_009249 Rice gall dwarf virus segment S4, complete sequence. NC_009250 Rice gall dwarf virus segment S6, complete sequence. NC_009251 Rice gall dwarf virus segment S7, complete sequence. NC_009252 Rice gall dwarf virus segment S12, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_009241 NC_009242 NC_009243 NC_009244 NC_009245 NC_009246 NC_009247 NC_009248 NC_009249 NC_009250 NC_009251 NC_009252 ICTV: 202304902 ViralZone: family, genus Descriptions of Plant Viruses: 296

Scientific Name	Rice necrosis mosaic virus [TAX:59500]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Bymovirus
RefSeq	NC_028144 Rice necrosis mosaic virus RNA 1, complete sequence. NC_028145 Rice necrosis mosaic virus RNA 2, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	Rice necrosis mosaic virus, a fungal transmitted Bymovirus: complete nucleotide sequence of the genomic RNAs and subgrouping of bymoviruses Rice necrosis mosaic virus, a fungal transmitted Bymovirus: complete nucleotide sequence of the genomic RNAs and subgrouping of bymoviruses
DBLINKS	KEGG BRITE: NC_028144 NC_028145 ICTV: 202304539 ViralZone: genus, family Descriptions of Plant Viruses: 172

Scientific Name	Rice stripe mosaic virus [TAX:1931356]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Cytorhabdovirus oryzae
RefSeq	NC_040786 Rice stripe mosaic virus isolate GD-LD, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040786 ICTV: 202307672 ViralZone: genus, family

Scientific Name	Rice stripe necrosis virus [TAX:373373]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Benyviridae; Benyvirus
RefSeq	NC_038774 Rice stripe necrosis virus segment RNA2, complete sequence. NC_038775 Rice stripe necrosis virus segment RNA1, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	Molecular characterisation of Rice stripe necrosis virus as a new species of the genus Benyvirus
DBLINKS	KEGG BRITE: NC_038774 NC_038775 ICTV: 202302736

Scientific Name	rice transitory yellowing virus [TAX:59380]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Alphanucleorhabdovirus; Alphanucleorhabdovirus oryzae
RefSeq	NC_003746 Rice yellow stunt virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003746 ICTV: 202301748 ViralZone: genus, family

Scientific Name	Rice tungro bacilliform virus [TAX:10654]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Tungrovirus; Tungrovirus oryzae
RefSeq	NC_001914 Rice tungro bacilliform virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001914 KEGG GENOME: T40207 ICTV: 202302887 ViralZone: genus, family Descriptions of Plant Viruses: 406

Scientific Name	Rice tungro spherical virus [TAX:35287]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Waikavirus; Waikavirus oryzae
RefSeq	NC_001632 Rice tungro spherical virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001632 KEGG GENOME: T40283 ICTV: 202302162 ViralZone: family, genus Descriptions of Plant Viruses: 407

Scientific Name	Rice virus A [TAX:2021212]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; unclassified Tombusviridae
RefSeq	NC_035452 Rice virus A isolate SK, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_035452

Scientific Name	Rice yellow mottle virus [TAX:31744]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Sobemovirus
RefSeq	NC_001575 Rice yellow mottle virus complete genome, isolate CI4.
Evidence	Literature
Reference	PMID: 15016846
Authors	Fargette D, Pinel A, Abubakar Z, Traoré O, Brugidou C, Fatogoma S, Hébrard E, Choisy M, Séré Y, Fauquet C, Konaté G
Title	Inferring the evolutionary history of rice yellow mottle virus from genomic, phylogenetic, and phylogeographic studies.
Journal	J Virol. 2004 Apr;78(7):3252-61.
DBLINKS	KEGG BRITE: NC_001575 KEGG GENOME: T40206 ICTV: 202305378 ViralZone: genus, family Descriptions of Plant Viruses: 149

Scientific Name	Rice yellow mottle virus satellite [TAX:195056]
Lineage	Viruses; Satellites; RNA satellites; Single stranded RNA satellites; Circular single stranded RNA satellites
RefSeq	NC_003380 Rice yellow mottle virus satellite, complete genome.
Evidence	Literature
Reference	PMID: 9499801
Authors	Collins RF, Gellatly DL, Sehgal OP, Abouhaidar MG
Title	Self-cleaving circular RNA associated with rice yellow mottle virus is the smallest viroid-like RNA.
Journal	Virology. 1998 Feb 15;241(2):269-75.
DBLINKS	KEGG BRITE: NC_003380

Scientific Name	Southern rice black-streaked dwarf virus [TAX:519497]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Fijivirus
RefSeq	NC_014708 Southern rice black-streaked dwarf virus segment 5, complete genome. NC_014709 Southern rice black-streaked dwarf virus segment 6, complete genome. NC_014710 Southern rice black-streaked dwarf virus segment 7, complete genome. NC_014711 Southern rice black-streaked dwarf virus segment 8, complete genome. NC_014712 Southern rice black-streaked dwarf virus segment 9, complete genome. NC_014713 Southern rice black-streaked dwarf virus segment 10, complete genome. NC_014714 Southern rice black-streaked dwarf virus segment 1, complete genome. NC_014715 Southern rice black-streaked dwarf virus segment 2, complete genome. NC_014716 Southern rice black-streaked dwarf virus segment 3, complete genome. NC_014717 Southern rice black-streaked dwarf virus segment 4, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	Wang, Q., Yang, J., Zhou, G. H., Zhang, H. M., Chen, J. P., & Adams, M. J. (2010). The Complete Genome Sequence of Two Isolates of Southern rice black‐streaked dwarf virus, a New Member of the Genus Fijivirus. Journal of Phytopathology, 158(11‐12), 733-737.
DBLINKS	KEGG BRITE: NC_014708 NC_014709 NC_014710 NC_014711 NC_014712 NC_014713 NC_014714 NC_014715 NC_014716 NC_014717 ICTV: 202304958 ViralZone: family, genus

Scientific Name	Sugarcane bacilliform MO virus [TAX:362399]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus; Badnavirus deltasacchari
RefSeq	NC_008017 Sugarcane bacilliform Mor virus, complete genome.
Evidence	Literature
Reference	PMID: 8423447
Authors	Bouhida M, Lockhart BE, Olszewski NE
Title	An analysis of the complete sequence of a sugarcane bacilliform virus genome infectious to banana and rice.
Journal	J Gen Virol. 1993 Jan;74 ( Pt 1):15-22.
DBLINKS	KEGG BRITE: NC_008017 ICTV: 202302854 ViralZone: family, genus

Scientific Name	Tenuivirus oryzabrevis [TAX:3052762]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus
RefSeq	NC_002323 Rice grassy stunt virus RNA 1, complete sequence. NC_002324 Rice grassy stunt virus RNA 2, complete sequence. NC_002325 Rice grassy stunt virus RNA 3, complete sequence. NC_002326 Rice grassy stunt virus RNA 4, complete sequence. NC_002327 Rice grassy stunt virus RNA 5, complete sequence. NC_002328 Rice grassy stunt virus RNA 6, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 9714257
Authors	Toriyama S, Kimishima T, Takahashi M, Shimizu T, Minaka N, Akutsu K
Title	The complete nucleotide sequence of the rice grassy stunt virus genome and genomic comparisons with viruses of the genus Tenuivirus.
Journal	J Gen Virol. 1998 Aug;79 ( Pt 8):2051-8.
DBLINKS	KEGG BRITE: NC_002323 NC_002324 NC_002325 NC_002326 NC_002327 NC_002328 KEGG GENOME: T40205 ICTV: 202300172 ViralZone: genus, family

Scientific Name	Tenuivirus oryzaclavatae [TAX:3052763]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus
RefSeq	NC_003753 Rice stripe virus RNA 4, complete sequence. NC_003754 Rice stripe virus RNA 2, complete sequence. NC_003755 Rice stripe virus RNA 1, complete sequence. NC_003776 Rice stripe virus RNA 3, complete sequence.
Evidence	Literature
Reference	PMID: 1588328
Authors	Zhu Y, Hayakawa T, Toriyama S
Title	Complete nucleotide sequence of RNA 4 of rice stripe virus isolate T, and comparison with another isolate and with maize stripe virus.
Journal	J Gen Virol. 1992 May;73 ( Pt 5):1309-12.
DBLINKS	KEGG BRITE: NC_003753 NC_003754 NC_003755 NC_003776 KEGG GENOME: T40176 ICTV: 202300174 ViralZone: genus, family

Scientific Name	Tenuivirus oryzalbae [TAX:3052764]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus
RefSeq	NC_036597 Rice hoja blanca tenuivirus segment RNA1, complete sequence. NC_036598 Rice hoja blanca tenuivirus segment RNA2, complete sequence. NC_036599 Rice hoja blanca tenuivirus segment RNA4, complete sequence. NC_036602 Rice hoja blanca tenuivirus segment RNA3, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	Jimenez, J., Carvajal-Yepes, M., Leiva, A. M., Cruz, M., Romero, L. E., Bolaños, C. A., ... & Cuellar, W. J. (2018). Complete Genome Sequence of Rice hoja blanca tenuivirus Isolated from a Susceptible Rice Cultivar in Colombia. Genome announcements, 6(7), e01490-17. Jimenez, J., Carvajal-Yepes, M., Leiva, A. M., Cruz, M., Romero, L. E., Bolaños, C. A., ... & Cuellar, W. J. (2018). Complete Genome Sequence of Rice hoja blanca tenuivirus Isolated from a Susceptible Rice Cultivar in Colombia. Genome announcements, 6(7), e01490-17. Jimenez, J., Carvajal-Yepes, M., Leiva, A. M., Cruz, M., Romero, L. E., Bolaños, C. A., ... & Cuellar, W. J. (2018). Complete Genome Sequence of Rice hoja blanca tenuivirus Isolated from a Susceptible Rice Cultivar in Colombia. Genome announcements, 6(7), e01490-17.
Comment	host="Oryza sativa cv. Bluebonnet 50" Vector: Tagosodes orizicolus host="Oryza sativa cv. Bluebonnet 50" Vector: Tagosodes orizicolus 482011 host="Oryza sativa cv. Bluebonnet 50" Vector: Tagosodes orizicolus
DBLINKS	KEGG BRITE: NC_036597 NC_036598 NC_036599 NC_036602 ICTV: 202300173 ViralZone: genus, family