Rhinolophus ferrumequinum

Rhinolophus ferrumequinum

Scientific Name	Rhinolophus ferrumequinum [TAX:59479]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus
DBLINKS	KEGG GENOME: T07722

Known viruses (16)

Scientific Name	Bat associated circovirus 1 [TAX:1868218]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Circovirus chauvesouris
RefSeq	NC_038385 Bat associated circovirus 1 isolate XOR, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 23630620
Authors	He B, Li Z, Yang F, Zheng J, Feng Y, Guo H, Li Y, Wang Y, Su N, Zhang F, Fan Q, Tu C
Title	Virome profiling of bats from Myanmar by metagenomic analysis of tissue samples reveals more novel Mammalian viruses.
Journal	PLoS One. 2013;8(4):e61950.
DBLINKS	KEGG BRITE: NC_038385 ICTV: 202302904 ViralZone: genus, family

Scientific Name	Bat associated circovirus 2 [TAX:1868219]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Circovirus vleermuis
RefSeq	NC_021206 Bat associated circovirus 2 isolate XOR7, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 23630620
Authors	He B, Li Z, Yang F, Zheng J, Feng Y, Guo H, Li Y, Wang Y, Su N, Zhang F, Fan Q, Tu C
Title	Virome profiling of bats from Myanmar by metagenomic analysis of tissue samples reveals more novel Mammalian viruses.
Journal	PLoS One. 2013;8(4):e61950.
DBLINKS	KEGG BRITE: NC_021206 ICTV: 202302905 ViralZone: genus, family

Scientific Name	Bat associated circovirus 3 [TAX:1868220]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Circovirus bianfu
RefSeq	NC_038386 Rhinolophus ferrumequinum circovirus 1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038386 ICTV: 202302906 ViralZone: genus, family

Scientific Name	Bat associated circovirus 9 [TAX:2169823]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Circovirus kelawar
RefSeq	NC_039033 Bat associated circovirus 9 isolate BtRf-CV-61/YN2010, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26262818
Authors	Wu Z, Yang L, Ren X, He G, Zhang J, Yang J, Qian Z, Dong J, Sun L, Zhu Y, Du J, Yang F, Zhang S, Jin Q
Title	Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases.
Journal	ISME J. 2016 Mar;10(3):609-20.
DBLINKS	KEGG BRITE: NC_039033 ICTV: 202305767 ViralZone: genus, family

Scientific Name	Bat CoV 273/2005 [TAX:389166]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus; Bat SARS CoV Rf1/2004
GenBank	DQ648856 Bat coronavirus (BtCoV/273/2005), complete genome.
Evidence	Literature
Reference	PMID: 16840328
Authors	Tang XC, Zhang JX, Zhang SY, Wang P, Fan XH, Li LF, Li G, Dong BQ, Liu W, Cheung CL, Xu KM, Song WJ, Vijaykrishna D, Poon LL, Peiris JS, Smith GJ, Chen H, Guan Y
Title	Prevalence and genetic diversity of coronaviruses in bats from China.
Journal	J Virol. 2006 Aug;80(15):7481-90.
DBLINKS	ViralZone: family, genus

Scientific Name	Bat hepatitis E virus [TAX:1216472]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Hepelivirales; Hepeviridae; Orthohepevirinae; Chirohepevirus; Chirohepevirus eptesici
RefSeq	NC_076569 Bat hepatitis E virus isolate Bat Rf-HEV/Shanxi2013 nonstructural polyprotein, capsid protein, and hypothetical protein genes, complete cds. NC_076918 Bat hepevirus isolate DesRot/Peru/API17_F_DrHEV, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076569 NC_076918 ICTV: 202313892, 202313891

Scientific Name	Bat paramyxovirus [TAX:1300978]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Jeilongvirus; Jeilongvirus murinae
RefSeq	NC_075983 Bat paramyxovirus isolate Bat-ParaV/B16-40, partial genome. NC_076570 Bat paramyxovirus isolate BtMl-ParaV/QH2013 nucleocapsid protein gene, partial cds; phosphoprotein, matrix protein, fusion protein, small hydrophobic protein, and attachment glycoprotein genes, complete cds; and polymerase gene, partial cds. NC_076624 Bat paramyxovirus strain Bat-PV-16797, complete genome. NC_076625 Bat paramyxovirus strain Bat-PV-17770, complete genome.
Evidence	Literature
Reference	PMID: 30135435
Authors	Noh JY, Jeong DG, Yoon SW, Kim JH, Choi YG, Kang SY, Kim HK
Title	Isolation and characterization of novel bat paramyxovirus B16-40 potentially belonging to the proposed genus Shaanvirus.
Journal	Sci Rep. 2018 Aug 22;8(1):12533.
DBLINKS	KEGG BRITE: NC_075983 NC_076570 NC_076624 NC_076625 ICTV: 202313347, 202313348, 202307560 ViralZone: genus, family

Scientific Name	Bat picornavirus [TAX:1281456]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Paavivirinae; Shanbavirus; Shanbavirus aminfuli; Shanbavirus A
RefSeq	NC_076039 Bat picornavirus isolate BtRf-PicoV-1/YN2012 polyprotein gene, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26262818
Authors	Wu Z, Yang L, Ren X, He G, Zhang J, Yang J, Qian Z, Dong J, Sun L, Zhu Y, Du J, Yang F, Zhang S, Jin Q
Title	Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases.
Journal	ISME J. 2016 Mar;10(3):609-20.
DBLINKS	KEGG BRITE: NC_076039 ICTV: 202307188 ViralZone: family

Scientific Name	Bat SARS CoV Rf1/2004 [TAX:347537]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus
GenBank	DQ412042 Bat SARS coronavirus Rf1, complete genome.
Evidence	GenBank
Evidence	Literature
Reference	PMID: 16195424
Authors	Li W, Shi Z, Yu M, Ren W, Smith C, Epstein JH, Wang H, Crameri G, Hu Z, Zhang H, Zhang J, McEachern J, Field H, Daszak P, Eaton BT, Zhang S, Wang LF
Title	Bats are natural reservoirs of SARS-like coronaviruses.
Journal	Science. 2005 Oct 28;310(5748):676-9.
DBLINKS	ViralZone: family, genus

Scientific Name	BtRf-AlphaCoV/HuB2013 [TAX:1503292]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Decacovirus; Rhinolophus ferrumequinum alphacoronavirus HuB-2013
RefSeq	NC_028814 BtRf-AlphaCoV/HuB2013, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26262818
Authors	Wu Z, Yang L, Ren X, He G, Zhang J, Yang J, Qian Z, Dong J, Sun L, Zhu Y, Du J, Yang F, Zhang S, Jin Q
Title	Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases.
Journal	ISME J. 2016 Mar;10(3):609-20.
DBLINKS	KEGG BRITE: NC_028814 ICTV: 202306109 ViralZone: genus, family

Scientific Name	BtRf-AlphaCoV/YN2012 [TAX:1503293]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Alphacoronavirus; Rhinacovirus; unclassified Rhinacovirus
RefSeq	NC_028824 BtRf-AlphaCoV/YN2012, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26262818
Authors	Wu Z, Yang L, Ren X, He G, Zhang J, Yang J, Qian Z, Dong J, Sun L, Zhu Y, Du J, Yang F, Zhang S, Jin Q
Title	Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases.
Journal	ISME J. 2016 Mar;10(3):609-20.
DBLINKS	KEGG BRITE: NC_028824 ViralZone: genus, family

Scientific Name	Mediterranean bat virus [TAX:2892035]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Vesiculovirus; Vesiculovirus mediterranean
RefSeq	NC_076939 Mediterranean bat virus isolate A09181, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076939 ICTV: 202313323 ViralZone: genus, family

Scientific Name	Rhinolophus associated gemykibivirus 2 [TAX:2004966]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus rhina2
RefSeq	NC_038500 Rhinolophus associated gemykibivirus 2 isolate BtRf-CV-8/NM2013, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038500 ICTV: 202303618 ViralZone: family, genus

Scientific Name	Rhinolophus ferrumequinum papillomavirus 1 [TAX:1464074]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Treisdeltapapillomavirus; Treisdeltapapillomavirus 1
RefSeq	NC_038527 Rhinolophus ferrumequinum papillomavirus type 1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038527 ICTV: 202304121 ViralZone: family

Scientific Name	Rhinolophus ferrumequinum retrovirus [TAX:1147756]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Mammalian gammaretrovirus group; unclassified Mammalian gammaretrovirus; Bat gammaretrovirus
GenBank	JQ303225 Rhinolophus ferrumequinum retrovirus isolate RfRV, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family, genus

Scientific Name	Rhinolophus gammaherpesvirus 1 [TAX:2054179]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Gammaherpesvirinae; Percavirus; Percavirus rhinolophidgamma1
RefSeq	NC_040539 Rhinolophus gammaherpesvirus 1 BV1 DNA, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040539 ICTV: 202314020 ViralZone: genus, family