Ixodes scapularis

Ixodes scapularis

Scientific Name	Ixodes scapularis [TAX:6945]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
DBLINKS	KEGG GENOME: T01131

Known viruses (13)

Scientific Name	Blacklegged tick chuvirus 2 [TAX:2079604]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Jingchuvirales; Chuviridae; Nigecruvirus; Nigecruvirus ixodes
RefSeq	NC_076200 Blacklegged tick chuvirus-2 isolate RTS126, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076200 ICTV: 202309728 ViralZone: family

Scientific Name	Blacklegged tick rhabdovirus 1 [TAX:2079605]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betaricinrhavirus; Betaricinrhavirus scapularis
RefSeq	NC_076201 Blacklegged tick rhabdovirus-1 isolate RTS95.16, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076201 ICTV: 202309657 ViralZone: family

Scientific Name	blacklegged tick virus 1 [TAX:1526521]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Ixovirus; Ixovirus heckscherense
RefSeq	NC_078093 Blacklegged tick phlebovirus-1 isolate H12 segment S, complete sequence. NC_078094 Blacklegged tick phlebovirus-1 isolate H12 segment L, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 25056893
Authors	Tokarz R, Williams SH, Sameroff S, Sanchez Leon M, Jain K, Lipkin WI
Title	Virome analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis ticks reveals novel highly divergent vertebrate and invertebrate viruses.
Journal	J Virol. 2014 Oct;88(19):11480-92.
DBLINKS	KEGG BRITE: NC_078093 NC_078094 ICTV: 202307640 ViralZone: family

Scientific Name	blacklegged tick virus 3 [TAX:1844920]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Ixovirus; Ixovirus ixodis
RefSeq	NC_055431 Blacklegged tick phlebovirus 3 isolate A1 N gene, complete cds. NC_055432 Blacklegged tick phlebovirus 3 isolate A1 L gene, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 29564401
Authors	Tokarz R, Sameroff S, Tagliafierro T, Jain K, Williams SH, Cucura DM, Rochlin I, Monzon J, Carpi G, Tufts D, Diuk-Wasser M, Brinkerhoff J, Lipkin WI
Title	Identification of Novel Viruses in <i>Amblyomma americanum</i>, <i>Dermacentor variabilis</i>, and <i>Ixodes scapularis</i> Ticks.
Journal	mSphere. 2018 Mar-Apr;3(2).
DBLINKS	KEGG BRITE: NC_055431 NC_055432 ICTV: 202307642 ViralZone: family

Scientific Name	Deer tick virus [TAX:58535]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus powassanense; Powassan virus
GenBank	AF311056 Deer tick virus strain ctb30 polyprotein gene, complete cds.
Evidence	Literature
Reference	PMID: 11716135
Authors	Kuno G, Artsob H, Karabatsos N, Tsuchiya KR, Chang GJ
Title	Genomic sequencing of deer tick virus and phylogeny of powassan-related viruses of North America.
Journal	Am J Trop Med Hyg. 2001 Nov;65(5):671-6.
Comment	Laboratory host: house mouse
Evidence	Literature
Reference	PMID: 24016533
Authors	Dupuis AP 2nd, Peters RJ, Prusinski MA, Falco RC, Ostfeld RS, Kramer LD
Title	Isolation of deer tick virus (Powassan virus, lineage II) from Ixodes scapularis and detection of antibody in vertebrate hosts sampled in the Hudson Valley, New York State.
Journal	Parasit Vectors. 2013 Jul 15;6:185.
Comment	Laboratory host: house mouse
DBLINKS	ICTV: 202303104

Scientific Name	Laurel Lake virus [TAX:2027354]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Laulavirus; Laulavirus laurelense
RefSeq	NC_043679 Laurel Lake virus isolate RTS65 RNA-dependent RNA-polymerase gene, complete cds. NC_043680 Lake Laurel virus isolate RTS65 segment RNA2 ORF1 gene, complete cds. NC_043681 Laurel Lake virus isolate RTS65 nucleocapsid gene, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 29564401
Authors	Tokarz R, Sameroff S, Tagliafierro T, Jain K, Williams SH, Cucura DM, Rochlin I, Monzon J, Carpi G, Tufts D, Diuk-Wasser M, Brinkerhoff J, Lipkin WI
Title	Identification of Novel Viruses in <i>Amblyomma americanum</i>, <i>Dermacentor variabilis</i>, and <i>Ixodes scapularis</i> Ticks.
Journal	mSphere. 2018 Mar-Apr;3(2).
DBLINKS	KEGG BRITE: NC_043679 NC_043680 NC_043681 ICTV: 202306609 ViralZone: family

Scientific Name	Mukawa virus [TAX:1569922]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Phlebovirus; Phlebovirus mukawaense
RefSeq	NC_043509 Mukawa virus cRNA, segment M, complete sequence, isolate: MKW73. NC_043510 Mukawa virus cRNA, segment L, complete sequence, isolate: MKW73. NC_043511 Mukawa virus cRNA, segment S, complete sequence, isolate: MKW73.
Evidence	Literature
Reference	PMID: 29898985
Authors	Matsuno K, Kajihara M, Nakao R, Nao N, Mori-Kajihara A, Muramatsu M, Qiu Y, Torii S, Igarashi M, Kasajima N, Mizuma K, Yoshii K, Sawa H, Sugimoto C, Takada A, Ebihara H
Title	The Unique Phylogenetic Position of a Novel Tick-Borne Phlebovirus Ensures an Ixodid Origin of the Genus <i>Phlebovirus</i>.
Journal	mSphere. 2018 Jun 27;3(3).
Comment	Culture cell line: Vero E6 cells,DH82 cells,Huh7 cells, and ISE6 cells
DBLINKS	KEGG BRITE: NC_043509 NC_043510 NC_043511 ICTV: 202306492 ViralZone: genus, family

Scientific Name	New Kent County virus [TAX:2079603]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Ephemerovirus; Ephemerovirus kent
RefSeq	NC_076208 New Kent County virus isolate RTS126, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076208 ICTV: 202309103 ViralZone: genus, family

Scientific Name	Powassan virus [TAX:11083]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus powassanense
RefSeq	NC_003687 Powassan virus, complete genome.
KEGG DISEASE	H00380 Tick-borne viral encephalitis
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003687 KEGG GENOME: T40060 ICTV: 202303104

Scientific Name	South Bay virus [TAX:1526514]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Nairoviridae; Sabavirus; Sabavirus americanum
RefSeq	NC_078237 South Bay virus isolate SBV-H-1 segment L, complete sequence. NC_078238 South Bay virus isolate SBV-H-1 segment S, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26903607
Authors	Walker PJ, Widen SG, Wood TG, Guzman H, Tesh RB, Vasilakis N
Title	A Global Genomic Characterization of Nairoviruses Identifies Nine Discrete Genogroups with Distinctive Structural Characteristics and Host-Vector Associations.
Journal	Am J Trop Med Hyg. 2016 May 4;94(5):1107-1122.
DBLINKS	KEGG BRITE: NC_078237 NC_078238 ICTV: 202309786 ViralZone: family

Scientific Name	St Croix River virus [TAX:104581]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Orbivirus
RefSeq	NC_005997 St Croix river virus segment 1 putative RNA-dependent RNA polymerase VP1 gene, complete cds. NC_005998 St Croix River virus chromosome segment 2, complete genome. NC_005999 St Croix River virus chromosome segment 3, complete genome. NC_006000 St Croix River virus chromosome segment 4, complete genome. NC_006001 St Croix River virus chromosome segment 5, complete genome. NC_006002 St Croix River virus chromosome segment 6, complete genome. NC_006003 St Croix River virus chromosome segment 7, complete genome. NC_006004 St Croix River virus chromosome segment 8, complete genome. NC_006005 St Croix River virus chromosome segment 9, complete genome. NC_006006 St Croix River virus chromosome segment 10, complete genome.
Evidence	Literature
Reference	PMID: 11257184
Authors	Attoui H, Stirling JM, Munderloh UG, Billoir F, Brookes SM, Burroughs JN, de Micco P, Mertens PP, de Lamballerie X
Title	Complete sequence characterization of the genome of the St Croix River virus, a new orbivirus isolated from cells of Ixodes scapularis.
Journal	J Gen Virol. 2001 Apr;82(Pt 4):795-804.
DBLINKS	KEGG BRITE: NC_005997 NC_005998 NC_005999 NC_006000 NC_006001 NC_006002 NC_006003 NC_006004 NC_006005 NC_006006 ICTV: 202304893 ViralZone: family, genus

Scientific Name	Suffolk virus [TAX:1577137]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Jingchuvirales; Chuviridae; Mivirus; Mivirus suffolkense
RefSeq	NC_028243 Suffolk virus isolate FI3, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_028243 ICTV: 202306067 ViralZone: family

Scientific Name	Tick-associated genomovirus 3 [TAX:2025479]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus ixode1
RefSeq	NC_075326 Tick-associated genomovirus 3 isolate tick25_VL-10, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_075326 ICTV: 202308979 ViralZone: family, genus