Sus scrofa domesticus

Scientific Name	Sus scrofa domesticus [TAX:9825]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus; Sus scrofa

Known viruses (36)

Scientific Name	African swine fever virus [TAX:10497]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Asfuvirales; Asfarviridae; Asfivirus
RefSeq	NC_001659 African swine fever virus strain BA71V, complete genome. NC_044941 African swine fever virus strain L60, complete genome. NC_044942 African swine fever virus, complete genome. NC_044943 African swine fever virus strain NHV, complete genome. NC_044944 African swine fever virus isolate Kenya 1950, complete genome. NC_044945 African swine fever virus strain Ken05/Tk1, complete genome. NC_044946 African swine fever virus strain Ken06.Bus, complete genome. NC_044947 African swine fever virus isolate 26544/OG10 from Italy, complete genome. NC_044948 African swine fever virus isolate Odintsovo_02/14, complete genome. NC_044955 African swine fever virus isolate 47/Ss/2008, complete genome. NC_044959 African swine fever virus isolate ASFV Georgia 2007/1 genome assembly, complete genome: monopartite.
Evidence	RefSeq
Evidence	Literature
Reference	Genomic analysis of Sardinian 26544/OG10 isolate of African swine fever virus, D Bacciu, M Deligios, G Sanna, MP Madrau, ML Sanna… - Virology Reports, 2016 - Elsevier
Comment	Culture cell line: PBMC cells
Evidence	Literature
Reference	PMID: 19009341
Authors	Gallardo C, Mwaengo DM, Macharia JM, Arias M, Taracha EA, Soler A, Okoth E, Martín E, Kasiti J, Bishop RP
Title	Enhanced discrimination of African swine fever virus isolates through nucleotide sequencing of the p54, p72, and pB602L (CVR) genes.
Journal	Virus Genes. 2009 Feb;38(1):85-95.
Evidence	Literature
Reference	PMID: 21470447
Authors	Chapman DA, Darby AC, Da Silva M, Upton C, Radford AD, Dixon LK
Title	Genomic analysis of highly virulent Georgia 2007/1 isolate of African swine fever virus.
Journal	Emerg Infect Dis. 2011 Apr;17(4):599-605.
Comment	Culture cell line: porcine bone marrow cells
Evidence	Literature
Reference	PMID: 25406173
Authors	Portugal R, Coelho J, Höper D, Little NS, Smithson C, Upton C, Martins C, Leitão A, Keil GM
Title	Related strains of African swine fever virus with different virulence: genome comparison and analysis.
Journal	J Gen Virol. 2015 Feb;96(Pt 2):408-419.
Evidence	Literature
Reference	PMID: 25645905
Authors	Bishop RP, Fleischauer C, de Villiers EP, Okoth EA, Arias M, Gallardo C, Upton C
Title	Comparative analysis of the complete genome sequences of Kenyan African swine fever virus isolates within p72 genotypes IX and X.
Journal	Virus Genes. 2015 Apr;50(2):303-9.
Evidence	Literature
Reference	PMID: 26618713
Authors	Rodríguez JM, Moreno LT, Alejo A, Lacasta A, Rodríguez F, Salas ML
Title	Genome Sequence of African Swine Fever Virus BA71, the Virulent Parental Strain of the Nonpathogenic and Tissue-Culture Adapted BA71V.
Journal	PLoS One. 2015;10(11):e0142889.
Comment	Culture cell line:　porcine monocytes
Evidence	Literature
Reference	PMID: 27856577
Authors	Granberg F, Torresi C, Oggiano A, Malmberg M, Iscaro C, De Mia GM, Belák S
Title	Complete Genome Sequence of an African Swine Fever Virus Isolate from Sardinia, Italy.
Journal	Genome Announc. 2016 Nov 17;4(6).
Evidence	Literature
Reference	PMID: 31817809
Authors	Pershin A, Shevchenko I, Igolkin A, Zhukov I, Mazloum A, Aronova E, Vlasova N, Shevtsov A
Title	A Long-Term Study of the Biological Properties of ASF Virus Isolates Originating from Various Regions of the Russian Federation in 2013-2018.
Journal	Vet Sci. 2019 Dec 6;6(4).
Comment	Culture cell line: PBMC cells
DBLINKS	KEGG BRITE: NC_001659 NC_044941 NC_044942 NC_044943 NC_044944 NC_044945 NC_044946 NC_044947 NC_044948 NC_044955 NC_044959 ICTV: 202302618

Scientific Name	African swine fever virus Benin 97/1 [TAX:443876]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Asfuvirales; Asfarviridae; Asfivirus; African swine fever virus
RefSeq	NC_044956 African swine fever virus Benin 97/1 pathogenic isolate, complete genome.
Evidence	Literature
Reference	PMID: 18198370
Authors	Chapman DAG, Tcherepanov V, Upton C, Dixon LK
Title	Comparison of the genome sequences of non-pathogenic and pathogenic African swine fever virus isolates.
Journal	J Gen Virol. 2008 Feb;89(Pt 2):397-408.
DBLINKS	KEGG BRITE: NC_044956 ICTV: 202302618

Scientific Name	African swine fever virus E75 [TAX:686262]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Asfuvirales; Asfarviridae; Asfivirus; African swine fever virus
RefSeq	NC_044958 African swine fever virus E75 complete genome, strain E75.
Evidence	Literature
Reference	PMID: 20171711
Authors	de Villiers EP, Gallardo C, Arias M, da Silva M, Upton C, Martin R, Bishop RP
Title	Phylogenomic analysis of 11 complete African swine fever virus genome sequences.
Journal	Virology. 2010 Apr 25;400(1):128-36.
Comment	Culture cell line: swine buffy coat cells
DBLINKS	KEGG BRITE: NC_044958 ICTV: 202302618

Scientific Name	African swine fever virus OURT 88/3 [TAX:443878]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Asfuvirales; Asfarviridae; Asfivirus; African swine fever virus
RefSeq	NC_044957 African swine fever virus OURT 88/3 (avirulent field isolate), complete genome.
Evidence	Literature
Reference	PMID: 18198370
Authors	Chapman DAG, Tcherepanov V, Upton C, Dixon LK
Title	Comparison of the genome sequences of non-pathogenic and pathogenic African swine fever virus isolates.
Journal	J Gen Virol. 2008 Feb;89(Pt 2):397-408.
Comment	Culture cell: pig bone marrow cells
DBLINKS	KEGG BRITE: NC_044957 ICTV: 202302618

Scientific Name	Atypical porcine pestivirus 1 [TAX:1873455]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pestivirus; Pestivirus scrofae; atypical porcine pestivirus
RefSeq	NC_030653 Atypical porcine pestivirus 1 isolate Bavaria S5/9 polyprotein gene, complete cds.
Evidence	Literature
Reference	PMID: 27292119
Authors	Postel A, Hansmann F, Baechlein C, Fischer N, Alawi M, Grundhoff A, Derking S, Tenhündfeld J, Pfankuche VM, Herder V, Baumgärtner W, Wendt M, Becher P
Title	Presence of atypical porcine pestivirus (APPV) genomes in newborn piglets correlates with congenital tremor.
Journal	Sci Rep. 2016 Jun 13;6:27735.
DBLINKS	KEGG BRITE: NC_030653

Scientific Name	Bocavirus pig/SX/China/2010 [TAX:912967]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Bocaparvovirus; Bocaparvovirus ungulate3; Porcine bocavirus SX
RefSeq	NC_038537 Bocavirus pig/SX/China/2010 NS1 (NS1), NP1 (NP1), VP1 (VP1), and VP2 (VP2) genes, complete cds.
Evidence	Literature
Reference	PMID: 21228124
Authors	Zeng S, Wang D, Fang L, Ma J, Song T, Zhang R, Chen H, Xiao S
Title	Complete coding sequences and phylogenetic analysis of porcine bocavirus.
Journal	J Gen Virol. 2011 Apr;92(Pt 4):784-8.
DBLINKS	KEGG BRITE: NC_038537 ICTV: 202304251 ViralZone: genus, family

Scientific Name	Bovine faeces associated circular DNA molecule 1 [TAX:1843763]
Lineage	Viruses; unclassified viruses
RefSeq	NC_030149 Bovine faeces associated circular DNA molecule 1 isolate 5_Fec60361_cow, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 27211884
Authors	Steel O, Kraberger S, Sikorski A, Young LM, Catchpole RJ, Stevens AJ, Ladley JJ, Coray DS, Stainton D, Dayaram A, Julian L, van Bysterveldt K, Varsani A
Title	Circular replication-associated protein encoding DNA viruses identified in the faecal matter of various animals in New Zealand.
Journal	Infect Genet Evol. 2016 Sep;43:151-64.
DBLINKS	KEGG BRITE: NC_030149

Scientific Name	Deltacoronavirus PDCoV/USA/Illinois121/2014 [TAX:1465644]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Deltacoronavirus; Buldecovirus; Coronavirus HKU15; Porcine coronavirus HKU15
GenBank	KJ481931 Deltacoronavirus PDCoV/USA/Illinois121/2014 from USA, complete genome.
Evidence	Literature
Reference	PMID: 24723704
Authors	Marthaler D, Jiang Y, Collins J, Rossow K
Title	Complete Genome Sequence of Strain SDCV/USA/Illinois121/2014, a Porcine Deltacoronavirus from the United States.
Journal	Genome Announc. 2014 Apr 10;2(2).
DBLINKS	ViralZone: genus, family

Scientific Name	Encephalomyocarditis virus [TAX:12104]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Cardiovirus; Cardiovirus A
RefSeq	NC_001479 Encephalomyocarditis virus, complete genome.
Evidence	Literature
Reference	PMID: 1310768
Authors	Duke GM, Hoffman MA, Palmenberg AC
Title	Sequence and structural elements that contribute to efficient encephalomyocarditis virus RNA translation.
Journal	J Virol. 1992 Mar;66(3):1602-9.
Comment	Culture cell line: Hela, BHK-21 cells
Evidence	Literature
Reference	PMID: 14425363
Authors	MURNANE TG, CRAIGHEAD JE, MONDRAGON H, SHELOKOV A
Title	Fatal disease of swine due to encephalomyocarditis virus.
Journal	Science. 1960 Feb 19;131(3399):498-9.
Comment	Culture cell line: Hela, BHK-21 cells
Evidence	Literature
Reference	PMID: 22722247
Authors	Carocci M, Bakkali-Kassimi L
Title	The encephalomyocarditis virus.
Journal	Virulence. 2012 Jul 1;3(4):351-67.
Comment	Culture cell line: Hela, BHK-21 cells
DBLINKS	KEGG BRITE: NC_001479 ICTV: 202301971 ViralZone: genus, family

Scientific Name	Linda virus [TAX:2014960]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pestivirus; Pestivirus L
RefSeq	NC_035432 Linda virus strain Austria1, complete genome.
Evidence	Literature
Reference	PMID: 28628456
Authors	Lamp B, Schwarz L, Högler S, Riedel C, Sinn L, Rebel-Bauder B, Weissenböck H, Ladinig A, Rümenapf T
Title	Novel Pestivirus Species in Pigs, Austria, 2015.
Journal	Emerg Infect Dis. 2017 Jul;23(7):1176-1179.
Comment	Culture cell line: SK-6 cells
DBLINKS	KEGG BRITE: NC_035432 ICTV: 202314004

Scientific Name	Menangle virus [TAX:152219]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Rubulavirinae; Pararubulavirus; Pararubulavirus menangleense
RefSeq	NC_039197 Menangle virus isolate Australia/bat/2009/Cedar Grove, complete genome.
Evidence	Literature
Reference	PMID: 22915696
Authors	Barr JA, Smith C, Marsh GA, Field H, Wang LF
Title	Evidence of bat origin for Menangle virus, a zoonotic paramyxovirus first isolated from diseased pigs.
Journal	J Gen Virol. 2012 Dec;93(Pt 12):2590-2594.
Comment	Culture cell line: Vero cells, PaKi cells
DBLINKS	KEGG BRITE: NC_039197 ICTV: 202301634 ViralZone: genus, family

Scientific Name	parainfluenza virus 5 [TAX:2905673]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Rubulavirinae; Orthorubulavirus; Orthorubulavirus mammalis
RefSeq	NC_006430 Parainfluenza virus 5 strain W3A.
Evidence	Literature
Reference	PMID: 23807746
Authors	Lee YN, Lee C
Title	Complete genome sequence of a novel porcine parainfluenza virus 5 isolate in Korea.
Journal	Arch Virol. 2013 Aug;158(8):1765-72.
Comment	Culture cell line: Vero cells
Evidence	Literature
Reference	PMID: 26583313
Authors	Liu Y, Li N, Zhang S, Zhang F, Lian H, Hu R
Title	Parainfluenza Virus 5 as Possible Cause of Severe Respiratory Disease in Calves, China.
Journal	Emerg Infect Dis. 2015 Dec;21(12):2242-4.
Comment	Culture cell line: Vero cells
Evidence	Literature
Reference	PMID: 28138777
Authors	Zhai JQ, Zhai SL, Lin T, Liu JK, Wang HX, Li B, Zhang H, Zou SZ, Zhou X, Wu MF, Chen W, Luo ML
Title	First complete genome sequence of parainfluenza virus 5 isolated from lesser panda.
Journal	Arch Virol. 2017 May;162(5):1413-1418.
Comment	Culture cell line: Vero cells
Evidence	Literature
Reference	PMID: 31450796
Authors	Feehan BJ, Penin AA, Mukhin AN, Kumar D, Moskvina AS, Khametova KM, Yuzhakov AG, Musienko MI, Zaberezhny AD, Aliper TI, Marthaler D, Alekseev KP
Title	Novel <i>Mammalian orthorubulavirus 5</i> Discovered as Accidental Cell Culture Contaminant.
Journal	Viruses. 2019 Aug 23;11(9).
Comment	Culture cell line: Vero cells
DBLINKS	KEGG BRITE: NC_006430 ICTV: 202301632 ViralZone: genus, family

Scientific Name	Peaton virus [TAX:159151]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus peachesterense
RefSeq	NC_043549 Peaton virus N and NSs genes, segment S, genomic RNA, isolate CSIRO 110. NC_043550 Peaton virus RdRp gene for RNA-dependent RNA polymerase, segment L, genomic RNA, isolate CSIRO 110. NC_043551 Peaton virus Gn-Gc-NSm gene for M polyprotein, segment M, genomic RNA, isolate CSIRO 110.
Evidence	Literature
Reference	PMID: 7436869
Authors	St George TD, Standfast HA, Cybinski DH, Filippich C, Carley JG
Title	Peaton virus: a new Simbu group arbovirus isolated from cattle and Culicoides brevitarsis in Australia.
Journal	Aust J Biol Sci. 1980 May;33(2):235-43.
Comment	Culture cell line: BHK21 cells Culture cell line: BHK21 cells
DBLINKS	KEGG BRITE: NC_043549 NC_043550 NC_043551 ICTV: 202306380 ViralZone: family, genus

Scientific Name	Pegivirus suis [TAX:3052614]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pegivirus
RefSeq	NC_034442 Pegivirus K isolate PPgV_903/Ger/2013 polyprotein gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_034442 ICTV: 202303150

Scientific Name	Picornavirales Bu-1 [TAX:1813615]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; unclassified Picornavirales; Husavirus; Husa-like virus KS-2016a
RefSeq	NC_030745 Picornavirales Bu-1 gene for polyprotein, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_030745

Scientific Name	Picornavirales Bu-3 [TAX:1813613]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; unclassified Picornavirales
RefSeq	NC_030697 Picornavirales Bu-3 gene for polyprotein, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_030697

Scientific Name	Picornavirales Tottori-HG1 [TAX:1795648]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; unclassified Picornavirales
RefSeq	NC_030744 Picornavirales Tottori-HG1 gene for polyprotein, complete cds, strain: Tottori-HG1.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_030744

Scientific Name	Pig stool associated circular ssDNA virus GER2011 [TAX:1114942]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; unclassified Smacoviridae
RefSeq	NC_017916 Pig stool associated circular ssDNA virus GER2011, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_017916 ICTV: 202317985 ViralZone: family

Scientific Name	Porcine associated porprismacovirus [TAX:2496634]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; unclassified Porprismacovirus
RefSeq	NC_076236 Porcine associated porprismacovirus isolate 17489x27_1438, complete genome. NC_076237 Porcine associated porprismacovirus isolate 17499x73_1865, complete genome. NC_076238 Porcine associated porprismacovirus isolate 17668x43_2798, complete genome. NC_076252 Porcine associated porprismacovirus isolate 17668x35_2540, complete genome. NC_076253 Porcine associated porprismacovirus isolate 17499x75_2040, complete genome. NC_076254 Porcine associated porprismacovirus isolate 17499x31_375, complete genome. NC_076255 Porcine associated porprismacovirus isolate 17499x3_679, complete genome. NC_076256 Porcine associated porprismacovirus isolate 17489x75_2609, complete genome. NC_076257 Porcine associated porprismacovirus isolate 17489x67_1878, complete genome. NC_076258 Porcine associated porprismacovirus isolate 17499x80_1385, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076236 NC_076237 NC_076238 NC_076252 NC_076253 NC_076254 NC_076255 NC_076256 NC_076257 NC_076258 ICTV: 202309536, 202309537, 202309538, 202309539, 202309540, 202309541, 202309542, 202309543, 202309544, 202309545 ViralZone: family

Scientific Name	Porcine associated porprismacovirus 10 [TAX:2170117]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; unclassified Porprismacovirus
RefSeq	NC_030126 Porcine associated porprismacovirus 10 isolate 49_Fec25_pig, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_030126 ICTV: 202305978 ViralZone: family

Scientific Name	Porcine bocavirus H18 [TAX:1511887]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Bocaparvovirus; Bocaparvovirus ungulate4
RefSeq	NC_038538 Porcine bocavirus H18, partial genome.
Evidence	Literature
Reference	PMID: 21525999
Authors	Shan T, Lan D, Li L, Wang C, Cui L, Zhang W, Hua X, Zhu C, Zhao W, Delwart E
Title	Genomic characterization and high prevalence of bocaviruses in swine.
Journal	PLoS One. 2011 Apr 15;6(4):e17292.
DBLINKS	KEGG BRITE: NC_038538 ICTV: 202304252 ViralZone: genus, family

Scientific Name	Porcine enterovirus 3H [TAX:1028489]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Enterovirus; Enterovirus G
GenBank	HQ702854 Porcine enterovirus 3H strain swine/K23/2008/HUN, complete genome.
Evidence	GenBank
DBLINKS	ICTV: 202301989 ViralZone: genus, family

Scientific Name	Porcine ephemerovirus 1 [TAX:2928256]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Ephemerovirus; unclassified Ephemerovirus
RefSeq	NC_077153 Porcine ephemerovirus 1 isolate HeN10, complete genome.
Evidence	Literature
Reference	PMID: 35321840
Authors	Wu Q, Yang Z, Lu Z, Mi S, Feng Y, He B, Zhu G, Gong W, Tu C
Title	Identification of two novel ephemeroviruses in pigs infected by classical swine fever virus.
Journal	Infect Genet Evol. 2022 Jun;100:105273.
DBLINKS	KEGG BRITE: NC_077153 ICTV: 202314176 ViralZone: genus, family

Scientific Name	Porcine ephemerovirus 2 [TAX:2928257]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Ephemerovirus; unclassified Ephemerovirus
RefSeq	NC_077154 Porcine ephemerovirus 2 isolate GDMM7, partial genome.
Evidence	Literature
Reference	PMID: 35321840
Authors	Wu Q, Yang Z, Lu Z, Mi S, Feng Y, He B, Zhu G, Gong W, Tu C
Title	Identification of two novel ephemeroviruses in pigs infected by classical swine fever virus.
Journal	Infect Genet Evol. 2022 Jun;100:105273.
DBLINKS	KEGG BRITE: NC_077154 ICTV: 202314177 ViralZone: genus, family

Scientific Name	Porcine hokovirus [TAX:494652]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Tetraparvovirus; Tetraparvovirus ungulate2
RefSeq	NC_038546 Porcine hokovirus strain HK7 non-structural protein (NS1), minor structural protein (VP1), and major structural protein (VP2) genes, complete cds.
Evidence	Literature
Reference	PMID: 20653980
Authors	Adlhoch C, Kaiser M, Ellerbrok H, Pauli G
Title	High prevalence of porcine Hokovirus in German wild boar populations.
Journal	Virol J. 2010 Jul 25;7:171.
Evidence	Literature
Reference	PMID: 21964922
Authors	Cadar D, Cságola A, Lorincz M, Tombácz K, Spînu M, Tuboly T
Title	Distribution and genetic diversity of porcine hokovirus in wild boars.
Journal	Arch Virol. 2011 Dec;156(12):2233-9.
DBLINKS	KEGG BRITE: NC_038546 ICTV: 202304282 ViralZone: family, genus

Scientific Name	Porcine kobuvirus swine/K-30-HUN/2008/HUN [TAX:703582]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Kobuvirus; Kobuvirus cebes; Porcine kobuvirus
GenBank	GQ249161 Porcine kobuvirus swine/K-30-HUN/2008/HUN, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: genus, family

Scientific Name	Porcine kobuvirus swine/S-1-HUN/2007/Hungary [TAX:569195]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Kobuvirus; Kobuvirus cebes
RefSeq	NC_011829 Porcine kobuvirus swine/S-1-HUN/2007/Hungary, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_011829 ICTV: 202302017 ViralZone: genus, family

Scientific Name	Porcine parvovirus 2 [TAX:1126383]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Tetraparvovirus; Tetraparvovirus ungulate3
RefSeq	NC_025965 Porcine parvovirus 2 strain BR/GO/ion_09_PPV-2/2011, complete genome. NC_038883 Parvovirus YX-2010/CHN isolate CnPPV_JH13 nonstructural protein and structural protein genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025965 NC_038883 ICTV: 202304283 ViralZone: family, genus

Scientific Name	Porcine pestivirus 1 [TAX:1689785]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pestivirus; Pestivirus scrofae
RefSeq	NC_038964 Porcine pestivirus 1 strain 000515 polyprotein mRNA, complete cds.
Evidence	Literature
Reference	PMID: 26219947
Authors	Hause BM, Collin EA, Peddireddi L, Yuan F, Chen Z, Hesse RA, Gauger PC, Clement T, Fang Y, Anderson G
Title	Discovery of a novel putative atypical porcine pestivirus in pigs in the USA.
Journal	J Gen Virol. 2015 Oct;96(10):2994-2998.
DBLINKS	KEGG BRITE: NC_038964 ICTV: 202305786

Scientific Name	Porcine polyomavirus [TAX:2126099]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; unclassified Polyomaviridae
RefSeq	NC_040714 Porcine polyomavirus strain 180230, complete genome.
Evidence	Literature
Reference	PMID: 29700160
Authors	Hause BM, Smith C, Bishop B, Stewart C, Simonson R
Title	Complete Genome Sequence of a Porcine Polyomavirus from Nasal Swabs of Pigs with Respiratory Disease.
Journal	Genome Announc. 2018 Apr 26;6(17).
DBLINKS	KEGG BRITE: NC_040714 ViralZone: family

Scientific Name	Porcine serum associated circular DNA virus 2 [TAX:2517212]
Lineage	Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses
RefSeq	NC_040831 Porcine serum associated circular DNA virus 2 isolate 2B/RS/BR, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040831

Scientific Name	Protoparvovirus Zsana/2013/HUN [TAX:1755694]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Protoparvovirus; Protoparvovirus ungulate2
RefSeq	NC_043446 Protoparvovirus Zsana/2013/HUN non-structural protein gene, partial cds; putative middle protein gene, complete cds; and structural protein-like gene, partial sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_043446 ICTV: 202305903 ViralZone: genus, family

Scientific Name	Respirovirus suis [TAX:3052733]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Feraresvirinae; Respirovirus
RefSeq	NC_025402 Porcine parainfluenza virus 1 strain S206N, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025402 ICTV: 202301625 ViralZone: genus, family

Scientific Name	Sabo virus [TAX:159138]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus saboense
RefSeq	NC_043552 Sabo virus Gn-Gc-NSm gene for M polyprotein, segment M, genomic RNA, isolate IB AN 9398. NC_043553 Sabo virus RdRp gene for RNA-dependent RNA polymerase, segment L, genomic RNA, isolate IB AN 9398. NC_043554 Sabo virus N and NSs genes, segment S, genomic RNA, isolate IB AN 9398.
Evidence	Literature
Reference	PMID: 4634776
Authors	Causey OR, Kemp GE, Causey CE, Lee VH
Title	Isolations of Simbu-group viruses in Ibadan, Nigeria 1964-69, including the new types Sango, Shamonda, Sabo and Shuni.
Journal	Ann Trop Med Parasitol. 1972 Sep;66(3):357-62.
DBLINKS	KEGG BRITE: NC_043552 NC_043553 NC_043554 ICTV: 202306353 ViralZone: family, genus

Scientific Name	Sus scrofa papillomavirus 1 [TAX:446138]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyodeltapapillomavirus; Dyodeltapapillomavirus 1
RefSeq	NC_011280 Sus scrofa papillomavirus type 1, complete genome.
Evidence	Literature
Reference	PMID: 18796716
Authors	Stevens H, Rector A, Van Der Kroght K, Van Ranst M
Title	Isolation and cloning of two variant papillomaviruses from domestic pigs: Sus scrofa papillomaviruses type 1 variants a and b.
Journal	J Gen Virol. 2008 Oct;89(Pt 10):2475-81.
Evidence	Other
Comment	domestic pig
DBLINKS	KEGG BRITE: NC_011280 ICTV: 202304009 ViralZone: genus, family

Scientific Name	tottorivirus A1 [TAX:1780058]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Tottorivirus; Tottorivirus A
RefSeq	NC_055159 Swine picornavirus Tottori-WOL gene for polyprotein, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 27016931
Authors	Naoi Y, Kishimoto M, Masuda T, Ito M, Tsuchiaka S, Sano K, Yamasato H, Omatsu T, Aoki H, Furuya T, Katayama Y, Oba M, Okada T, Shirai J, Mizutani T, Nagai M
Title	Characterization and phylogenetic analysis of a novel picornavirus from swine feces in Japan.
Journal	Arch Virol. 2016 Jun;161(6):1685-90.
DBLINKS	KEGG BRITE: NC_055159 ICTV: 202306483 ViralZone: family