KEGG   Vitis vinifera (wine grape): 100241658
Entry
100241658         CDS       T01084                                 
Name
(RefSeq) putative tRNA pseudouridine synthase
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vvi03016]
    100241658
Enzymes [BR:vvi01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     100241658
Transfer RNA biogenesis [BR:vvi03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    100241658
 Prokaryotic type
    100241658
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-GeneID: 100241658
NCBI-ProteinID: XP_010650836
Position
6:complement(join(8510859..8510874,8511434..8511846,8512825..8513283,8513848..8513992,8514608..8514756,8514850..8514962,8516144..8516179,8516268..8516499))
AA seq 520 aa
MVVSSLRFPLFPWIISNHTSNLRFSNPRILPQWSLHCSSSSSSTVTESNPDQSVQKWESF
RKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHKIGWDR
SSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQRSFD
ARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTIRSKYR
KQFPAKQSPGNGGVFRRAKSSGEASTSEFEVSDGEENSGINGVISSDYDEGENQNSSEST
SFVEHPVGSSNNNEKGLKEQSPKLVVRARWLHGPDERDRISASHFRKIFNCSCGKLEKFL
GLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTLSLTKFSRIVLPLAPSEVLI
LRGNSFSVRKKPGNVKRPEMLTLMESEEILKSVDEFYTSVILPQVSKFLDPSKSPWHDWL
ENLTLSSIPEAELDDVRTAWKLWKENFRSRTKVMSMDCCN
NT seq 1563 nt   +upstreamnt  +downstreamnt
atggtcgtctcttctctgcggttcccgctcttcccatggattatctcgaaccatacttcc
aatcttcgtttctcaaaccctaggattctccctcagtggtcgctccattgttcatcttct
tcatcttcaactgtcaccgagtccaatccggaccagtcggtccagaaatgggaatctttt
cggaaaaagaaagtggtaatgcgggtcggatatgtcggcaccaattacagaggtttgcaa
atgcagcgagatgaaagctctttatcaactattgaaggagaattggaaactgctgtgttt
aaggccgggggaattcgtgatagtaattatgggaatctacacaaaattgggtgggacaga
agtagccgaactgataaaggagttcactcattggcaaccatgatatccttaaaaatggaa
ataccagcaaatgcatggaaggaagatcctaatggcattgcacttgcgaattatgttaac
tttcatcttcctaacaatatcaaagttttcagcattttaccatcacaaaggagctttgat
gctagaagggaatgtgatcttcggaggtattcttacctcctcccagctgaaattattgga
attaaaagtaactccagtgcttcagaaattgatcatcatatagcagagttcaacgacata
ttgaatacttttgagggagaacatcctttccaaaactacacaatacggtctaagtacagg
aaacagtttcctgcaaagcaatctcctggtaatggtggagtgttcagaagagcaaaatca
tctggtgaggcatcaacttctgagtttgaggtaagtgatggagaagaaaattctggaatc
aatggagtgatttcatcagattatgatgagggagagaatcaaaattcatcagagtccacc
agctttgttgaacatccagttggaagttccaataataatgagaagggtttgaaggagcaa
agtcccaaattagttgttcgtgcaagatggctacatggacctgatgagagagatagaatt
agtgcttcccacttcagaaagatttttaactgttcttgtggaaagctggagaaatttctt
ggattagattacgttgagctttccatttgtggagagtctttcatgttgcatcaaatccgc
aaaatggttgggactgcaatagcagtaaaacgggaattactcccaagagatattttgaca
ttgtcattgaccaagttctcacggattgtcctgccccttgccccttctgaagttctaatt
ttgaggggtaacagtttctcagtgaggaaaaaacctggcaatgtaaaaaggcctgaaatg
cttacattgatggaatctgaggaaattctcaagtctgttgatgaattctacacatctgta
attttgcctcaagtttcaaaatttttggacccttcaaagtctccttggcacgactggctt
gagaacctaactctgtcaagcattccagaagctgagttggatgatgtcaggactgcttgg
aaactgtggaaggaaaatttccggagtagaaccaaggttatgtccatggactgctgtaat
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system