KEGG   Vitis vinifera (wine grape): 100254758
Entry
100254758         CDS       T01084                                 
Name
(RefSeq) replication protein A 32 kDa subunit B isoform X2
  KO
K10739  replication factor A2
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03030  DNA replication
vvi03420  Nucleotide excision repair
vvi03430  Mismatch repair
vvi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100254758
   03420 Nucleotide excision repair
    100254758
   03430 Mismatch repair
    100254758
   03440 Homologous recombination
    100254758
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvi03032]
    100254758
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100254758
DNA replication proteins [BR:vvi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    100254758
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     100254758
   MMR (mismatch excision repair)
     100254758
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     100254758
SSDB
Motif
Pfam: RPA_C tRNA_anti-codon RMI2 HTH_24 TrmB GntR HTH_27
Other DBs
NCBI-GeneID: 100254758
NCBI-ProteinID: XP_002268721
Position
11:complement(join(18652845..18652929,18653017..18653085,18654961..18655037,18655122..18655205,18655295..18655373,18657363..18657440,18657583..18657624,18657724..18657821,18657897..18658007,18658597..18658701))
AA seq 275 aa
MYSHSQFDGNAAFSGGGFMPSQATQAAEPGFSPARNRDTQALLPLTVKQISEAFLSSDDK
SNFLIDGVEVNNVTLVGMVFNKAERVTDVGFMLDDGTGRIDCNRWVNEAVDTKEMEGILD
GMYVRVHGHLKGFQGKRHLNVFSIRPVTDFNEIASHFIECIYVHIYNTKSRAGGPTQSHV
TNPAIGTPLKGYQASQPNQFSGQYGAGLKGVDQLVIDYLQQPQSLARDQGVGRDELAQQL
NVPVDKIMESIRSLEEEGLIYSTIDEWHYKSTGNG
NT seq 828 nt   +upstreamnt  +downstreamnt
atgtattcccacagtcaattcgacggcaacgccgccttctctggcgggggattcatgccc
tcacaggccactcaggccgccgaacctggtttttctcctgccagaaatcgggatacacaa
gcgttgcttcccttgaccgtgaagcagataagtgaagcttttctctcaagcgatgataaa
tccaattttctcattgatggtgtcgaagtgaacaatgtcacacttgtggggatggtattc
aacaaagctgaaagggttactgatgttggttttatgctggatgatggaacagggcgtatt
gactgtaacagatgggtcaatgaagctgtagacacaaaggaaatggaaggaattctagat
ggcatgtatgttcgagttcatggacacttgaagggttttcagggtaaaaggcatttaaat
gtcttctctattaggcctgtgactgactttaatgagattgccagccacttcattgagtgt
atctatgtgcatatctacaacactaaatcacgggctggtggccctactcagtcccatgtt
acaaatccggccattggtacccctttaaagggttaccaagcttctcaaccaaatcaattc
tctgggcaatatggtgctggacttaagggcgttgatcaactggtcatagattatttgcag
caacctcagtccctggctcgagaccagggggtaggccgggatgagcttgcccaacagcta
aatgttccagtcgataaaatcatggaatctattagatcactcgaagaggaaggcctgatt
tactcaacaattgatgaatggcattacaagtcaactggcaatggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (33)   

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