+F Repair protein KO
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DNA Repair and Recombination Proteins - Buchnera aphidicola W106 (Myzus persicae)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BUMPW106_CDS00296 phrb; Phrb K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BUMPW106_CDS00412 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BUMPW106_CDS00051 muty; Muty K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BUMPW106_CDS00477 nth; Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BUMPW106_CDS00393 mutt; Mutt K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BUMPW106_CDS00045 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BUMPW106_CDS00296 phrb; Phrb K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BUMPW106_CDS00412 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BUMPW106_CDS00051 muty; Muty K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BUMPW106_CDS00477 nth; Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BUMPW106_CDS00458 nfo; Nfo K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
D DNA ligase
E BUMPW106_CDS00523 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BUMPW106_CDS00523 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BUMPW106_CDS00552 rpob; Rpob K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BUMPW106_CDS00553 rpoc; Rpoc K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BUMPW106_CDS00103 rpoa; Rpoa K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BUMPW106_CDS00303 mfd; Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BUMPW106_CDS00170 muts; Muts K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E BUMPW106_CDS00035 mutl; Mutl K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BUMPW106_CDS00048 sbcb; Sbcb K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D DNA polymerase III holoenzyme
E BUMPW106_CDS00355 dnae; Dnae K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BUMPW106_CDS00575 dnan; Dnan K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BUMPW106_CDS00154 hola; Hola K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BUMPW106_CDS00242 holb; Holb K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BUMPW106_CDS00347 dnaq; Dnaq K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BUMPW106_CDS00118 dnax; Dnax K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BUMPW106_CDS00523 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BUMPW106_CDS00058 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BUMPW106_CDS00145 recb; Recb K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E BUMPW106_CDS00146 recc; Recc K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E BUMPW106_CDS00144 recd; Recd K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BUMPW106_CDS00476 pria; Pria K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BUMPW106_CDS00564 dnat; Dnat K02317 dnaT; DNA replication protein DnaT
E BUMPW106_CDS00048 sbcb; Sbcb K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BUMPW106_CDS00415 gyra; Gyra K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BUMPW106_CDS00576 gyrb; Gyrb K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BUMPW106_CDS00313 topa; Topa K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BUMPW106_CDS00554 hupa; Hupa K05787 hupA; DNA-binding protein HU-alpha
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BUMPW106_CDS00523 lig; Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F BUMPW106_CDS00197 fis; Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F BUMPW106_CDS00465 ihfa; Ihfa K04764 ihfA; integration host factor subunit alpha
F BUMPW106_CDS00288 ihfb; Ihfb K05788 ihfB; integration host factor subunit beta
E Supressor
F BUMPW106_CDS00048 sbcb; Sbcb K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D BUMPW106_CDS00058 ssb; Ssb K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D BUMPW106_CDS00010 rep; Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
C Modulation of nucleotide pools
D BUMPW106_CDS00393 mutt; Mutt K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BUMPW106_CDS00045 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BUMPW106_CDS00416 nrda; Nrda K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BUMPW106_CDS00417 nrdb; Nrdb K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024