+E Messenger RNA Biogenesis KO
#
Messenger RNA Biogenesis - Bos taurus (cow)
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 511555 RNMT; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 511408 RNGTT; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 515462 CDK7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 509620 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 781914 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 614296 RAMAC; RNA guanine-N7 methyltransferase activating subunit K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 100124428 NCBP1; nuclear cap-binding protein subunit 1 isoform X1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 510872 NCBP2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
E 107132038 NCBP2L; LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 2-like K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 518859 NUDT21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 768231 CPSF6; cleavage and polyadenylation specificity factor subunit 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 504925 CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X2 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 506507 CLP1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 510604 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 282703 CPSF1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 327689 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 281712 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 280875 CPSF4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 790056 CPSF4L; LOW QUALITY PROTEIN: putative cleavage and polyadenylation specificity factor subunit 4-like protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 100138550 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 541270 WDR33; pre-mRNA 3' end processing protein WDR33 K15542 PFS2; polyadenylation factor subunit 2
E 783336 WDR82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 282318 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 516175 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 538829 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 614837 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 617499 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 785109 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 like protein 3 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 788363 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 like protein 3 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 112445820 RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 112441581 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 like protein 3-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 112441582 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 like protein 5-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E 528976 LOW QUALITY PROTEIN: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 507051 CSTF1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 282588 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 783569 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 508491 CSTF3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 100337373 SYMPK; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 613304 SNRPB; small nuclear ribonucleoprotein-associated protein B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 617823 SNRPD3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 531493 SNRPE; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 112442575 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 112442676 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 107132043 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 107132237 small nuclear ribonucleoprotein E-like K11097 SNRPE; small nuclear ribonucleoprotein E
E 615240 SNRPF; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 107131530 small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 522621 SNRPG; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 107131494 small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 107132386 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 107132556 small nuclear ribonucleoprotein G-like K11099 SNRPG; small nuclear ribonucleoprotein G
E 618089 LSM10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 785718 LSM11; U7 snRNA-associated Sm-like protein LSm11 isoform X1 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 327689 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 281712 CPSF3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 282588 CSTF2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 783569 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 100337373 SYMPK; symplekin K06100 SYMPK; symplekin
E 444868 SLBP; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 505138 CASP8AP2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 616425 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 519808 SUPT5H; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 540339 METTL3; N6-adenosine-methyltransferase catalytic subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 531382 METTL14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 521222 METTL4; N(6)-adenine-specific methyltransferase METTL4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 509278 METTL16; RNA N6-adenosine-methyltransferase METTL16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 104975673 LOW QUALITY PROTEIN: pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 532996 WTAP; pre-mRNA-splicing regulator WTAP isoform 2 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 782848 VIRMA; protein virilizer homolog K22910 VIRMA; protein virilizer
E 508868 RBM15B; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 541044 RBM15; RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 112441506 LOW QUALITY PROTEIN: putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 540735 ZC3H13; zinc finger CCCH domain-containing protein 13 isoform X3 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 524139 CBLL1; E3 ubiquitin-protein ligase Hakai K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 529071 PAPOLG; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 338051 PAPOLA; poly(A) polymerase alpha K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 100140898 PAPOLB; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 533862 TENT2; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 616339 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 530961 BARD1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 504409 RBM26; RNA-binding protein 26 isoform X1 K13192 RBM26; RNA-binding protein 26
E 618622 FTO; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 533303 ALKBH5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 540632 TARDBP; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 533484 DHX40; probable ATP-dependent RNA helicase DHX40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 519670 KIN; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 506947 METTL8; tRNA N(3)-methylcytidine methyltransferase METTL8, mitochondrial K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 509540 METTL22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 540234 TENT5A; terminal nucleotidyltransferase 5A isoform X1 K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 506745 TENT5B; terminal nucleotidyltransferase 5B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 517961 TENT5C; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 100124506 TENT5D; terminal nucleotidyltransferase 5D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 511473 ZC3H14; zinc finger CCCH domain-containing protein 14 isoform 1 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 527938 SRRT; serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 518045 RBM8A; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 505417 MAGOH; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 541013 MAGOHB; protein mago nashi homolog 2 K12877 MAGOH; protein mago nashi
E 537706 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 540191 DDX39B; spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 515145 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 512697 CCDC174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 531673 CASC3; protein CASC3 K14323 CASC3; protein CASC3
E 615692 SAP18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 100296970 PNN; pinin K13114 PNN; pinin
E 534600 ACIN1; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 508834 ribonucleic acid binding protein S1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 504506 RNPS1; RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 112447314 RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 784123 SRRM1; serine/arginine repetitive matrix protein 1 isoform X5 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 100138748 THOC1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 507738 THOC2; THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 100299503 THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 529231 THOC3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 537706 ALYREF; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 533001 THOC5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 100125940 THOC6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 510250 THOC7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
E 101907835 THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 617943 PCID2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 767981 SEM1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 101907965 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 614069 ENY2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 508601 CETN2; centrin-2 K10840 CETN2; centrin-2
E 532953 CETN3; centrin-3 K16466 CETN3; centrin-3
E 534293 MCM3AP; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 507869 TPR; nucleoprotein TPR K09291 TPR; nucleoprotein TPR
E 513080 RAE1; mRNA export factor K14298 RAE1; mRNA export factor
E 512530 SEC13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 100139879 NUP37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 510540 NUP85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 520174 NUP43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 506836 NUP50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 506916 NUP54; nucleoporin p54 K14308 NUP54; nuclear pore complex protein Nup54
E 789388 LOW QUALITY PROTEIN: nuclear pore complex protein Nup54-like K14308 NUP54; nuclear pore complex protein Nup54
E 100138517 NUP62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 516074 NUP62CL; nucleoporin-62 C-terminal-like protein K14306 NUP62; nuclear pore complex protein Nup62
E 504786 NUP88; nuclear pore complex protein Nup88 K14318 NUP88; nuclear pore complex protein Nup88
E 510004 NUP93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 540004 NUP98; nuclear pore complex protein Nup98-Nup96 isoform X2 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 504823 NUP107; nuclear pore complex protein Nup107 isoform X2 K14301 NUP107; nuclear pore complex protein Nup107
E 524528 NUP133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 504307 NUP188; nucleoporin NUP188 K14311 NUP188; nuclear pore complex protein Nup188
E 513270 NUP153; nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153
E 506738 NUP155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 540111 NUP160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 511248 NUP35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 520924 NUP205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 100125264 NUP210; nuclear pore membrane glycoprotein 210 precursor K14314 NUP210; nuclear pore complex protein Nup210
E 785834 NUP210L; nuclear pore membrane glycoprotein 210-like isoform X4 K14314 NUP210; nuclear pore complex protein Nup210
E 784219 NUP214; nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 518768 POM121C; nuclear envelope pore membrane protein POM 121C isoform X1 K14316 POM121; nuclear pore complex protein Nup121
E 100140439 POM121L2; POM121-like protein 2 K14316 POM121; nuclear pore complex protein Nup121
E 614694 NUP58; nucleoporin p58/p45 K14307 NUPL1; nucleoporin p58/p45
E 515127 NUP42; nucleoporin NUP42 K14321 NUPL2; nucleoporin-like protein 2
E 616114 NDC1; nucleoporin NDC1 isoform X1 K14315 NDC1; nucleoporin NDC1
E 506509 SEH1L; nucleoporin SEH1 K14299 SEH1; nucleoporin SEH1
E 785768 RANBP2; E3 SUMO-protein ligase RanBP2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 539639 SENP2; sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 506561 AAAS; aladin K14320 AAAS; aladin
E 532953 CETN3; centrin-3 K16466 CETN3; centrin-3
E 540982 GLE1; mRNA export factor GLE1 K18723 GLE1; nucleoporin GLE1
E 512136 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 613789 NXF2; nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 615581 nuclear RNA export factor 3 isoform X1 K14284 NXF; nuclear RNA export factor
E 785244 LOW QUALITY PROTEIN: nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 523530 NXF3; nuclear RNA export factor 3 isoform X1 K14284 NXF; nuclear RNA export factor
E 132344734 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 520351 NXT1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 513043 NXT2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
E 112447807 NPAP1; nuclear pore-associated protein 1 K26564 NPAP1; nuclear pore-associated protein 1
D Ran-mediated transport factors
E 540457 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 786258 GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 101902622 GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 132346044 GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 104973258 GTP-binding nuclear protein Ran-like K07936 RAN; GTP-binding nuclear protein Ran
E 538427 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 509685 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 538567 TNFSF13; tumor necrosis factor ligand superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 617316 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 535408 ELAVL4; ELAV-like protein 4 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 520376 ELAVL3; ELAV-like protein 3 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 100296271 ELAVL2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 767948 FAF2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 507345 VCP; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 540184 VCPKMT; protein N-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 504589 TNPO2; transportin-2 K18727 TNPO2; transportin-2
E 510568 XPO1; exportin-1 K14290 XPO1; exportin-1
E 100124498 XPO7; exportin-7 K18460 XPO7; exportin-7
E 100337114 RANBP17; ran-binding protein 17 isoform X3 K24115 RANBP17; Ran-binding protein 17
E 616055 RANGAP1; ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 536067 TAF15; TATA-binding protein-associated factor 2N K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 281751 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 519920 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform 1 K03259 EIF4E; translation initiation factor 4E
E 614570 EIF4E1B; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 286819 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 504958 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 286870 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 444858 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X10 K03260 EIF4G; translation initiation factor 4G
E 534618 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X2 K03260 EIF4G; translation initiation factor 4G
E 505850 EIF4B; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 517409 EIF4H; eukaryotic translation initiation factor 4H K24086 EIF4H; translation initiation factor 4H
E 509613 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 782397 EIF4EBP2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 100533104 EIF4EBP3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 514108 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X2 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 540507 ANGEL2; protein angel homolog 2 K18729 ANGEL; protein angel
E 508197 ANGEL1; LOW QUALITY PROTEIN: protein angel homolog 1 K18729 ANGEL; protein angel
E 507482 FMR1; fragile X mental retardation protein 1 K15516 FMR; fragile X mental retardation protein
E 536793 FXR1; RNA-binding protein FXR1 K15516 FMR; fragile X mental retardation protein
E 618127 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 518833 CYFIP2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100141021 CYFIP1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 533444 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 506194 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 514174 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 537016 CPEB3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 538794 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 538880 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 510093 DDX3X; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 783057 DDX3Y; DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 506913 GIGYF2; GRB10-interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 532406 GIGYF1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 282296 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 511286 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 784438 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 509864 PABPC1L; polyadenylate-binding protein 1-like isoform X2 K13126 PABPC; polyadenylate-binding protein
E 521086 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 534576 PABPC4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 101908085 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 510246 PAIP1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 536619 PAIP2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 789468 PAIP2B; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 100139548 SKIC2; superkiller complex protein 2 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 509260 DEAF1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 508412 MCTS1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 515358 uncharacterized protein LOC515358 K07575 MCTS; malignant T-cell-amplified sequence
E 614238 DENR; density-regulated protein K24272 DENR; density-regulated protein
E 112441457 density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 516043 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 100336715 A1CF; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 787259 PYM1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 782669 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 505093 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 785761 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101902301 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100848353 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 614922 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 785445 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 112445996 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101902221 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 781499 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 615271 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 614783 DAZAP1; DAZ-associated protein 1 K14411 MSI; RNA-binding protein Musashi
E 527436 MSI1; RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 505542 MSI2; RNA-binding protein Musashi homolog 2 K14411 MSI; RNA-binding protein Musashi
E 541083 HBS1L; HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein
E 528728 PELO; protein pelota homolog K06965 PELO; protein pelota
E 282298 PABPN1; polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 617429 PABPN1L; LOW QUALITY PROTEIN: embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 616281 polyadenylate-binding protein 2-like K14396 PABPN1; polyadenylate-binding protein 2
E 112442288 polyadenylate-binding protein 2-like K14396 PABPN1; polyadenylate-binding protein 2
E 517438 DDX19B; ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 529929 DDX19A; ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 508962 DDX25; ATP-dependent RNA helicase DDX25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 528991 XAB2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 732539 SARNP; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 534142 RCC1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 787569 LARP6; la-related protein 6 K18733 LARP6; la-related protein 6
E 782746 PURA; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 504276 PURB; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 512693 POLDIP3; polymerase delta-interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 529699 ZC3H11A; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 526370 LENG8; leukocyte receptor cluster member 8 K23802 LENG8; SAC3 family protein LENG8/THP3
E 616745 PATL2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 541077 ETF1; eukaryotic peptide chain release factor subunit 1 K03265 ETF1; peptide chain release factor subunit 1
E 532337 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 538724 GSPT2; eukaryotic peptide chain release factor GTP-binding subunit ERF3B K03267 ERF3; peptide chain release factor subunit 3
E 532933 UPF1; regulator of nonsense transcripts 1 isoform X2 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 781181 UPF2; regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 616181 UPF3B; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 529442 UPF3A; regulator of nonsense transcripts 3A isoform X2 K14328 UPF3; regulator of nonsense transcripts 3
E 132342969 LOW QUALITY PROTEIN: regulator of nonsense transcripts 3A-like K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 282320 PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 524361 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 616695 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 535321 PPP2R1A; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 100138150 PPP2R1B; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X4 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 132344360 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 508045 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 509290 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 782110 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 533147 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 100298789 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 787607 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X3 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 132342097 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 505915 PPP2R5B; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 505757 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 533617 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 533788 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100134966 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 525143 SMG1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 513598 SMG5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 516411 SMG6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 537131 SMG7; nonsense-mediated mRNA decay factor SMG7 K14409 SMG7; protein SMG7
E 522040 SMG8; nonsense-mediated mRNA decay factor SMG8 K18734 SMG8; protein SMG8
E 615492 SMG9; nonsense-mediated mRNA decay factor SMG9 K18735 SMG9; protein SMG9
E 506913 GIGYF2; GRB10-interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 532406 GIGYF1; GRB10-interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 511202 SECISBP2; selenocysteine insertion sequence-binding protein 2 isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 100848979 SECISBP2L; selenocysteine insertion sequence-binding protein 2-like isoform X1 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 506965 DHX34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 513922 GTPBP1; GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 514957 PUM3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 514078 MYO5B; unconventional myosin-Vb isoform X2 K10357 MYO5; myosin V
E 532574 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 541234 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 282447 BICD2; protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 533796 BICD1; protein bicaudal D homolog 1 isoform X1 K18739 BICD; protein bicaudal D
E 617602 EXD1; piRNA biogenesis protein EXD1 isoform X1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 404122 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 280979 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 618684 MBP; myelin basic protein K17269 MBP; myelin basic protein
E 280955 VIM; vimentin K07606 VIM; vimentin
E 404070 MT2A; metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 613358 MT1E; metallothionein 1E K14739 MT1_2; metallothionein 1/2
E 404071 MT1A; metallothionein-1A K14739 MT1_2; metallothionein 1/2
E 768319 MT1E; metallothionein 1E K14739 MT1_2; metallothionein 1/2
E 511077 MYC; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 104968455 GDF1; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 526448 TBX6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 786356 NANOS1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 508333 ZBP1; Z-DNA-binding protein 1 isoform X1 K12965 ZBP1; Z-DNA binding protein 1
E 513562 FUBP1; far upstream element-binding protein 1 K13210 FUBP; far upstream element-binding protein
E 541080 FUBP3; far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein
E 505564 KHSRP; far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 282220 EEF1A1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 515233 EEF1A2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 326581 EEF1G; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 507564 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 538435 heterogeneous nuclear ribonucleoproteins A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 101904796 heterogeneous nuclear ribonucleoproteins A2/B1-like K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 112443416 heterogeneous nuclear ribonucleoproteins A2/B1-like K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 506895 HAX1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 536149 AGFG1; arf-GAP domain and FG repeat-containing protein 1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 100125233 STAU2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 513944 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 539650 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 282018 PTBP1; polypyrimidine tract-binding protein 1 isoform 1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 514174 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 537016 CPEB3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 538794 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 538880 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 507482 FMR1; fragile X mental retardation protein 1 K15516 FMR; fragile X mental retardation protein
E 536793 FXR1; RNA-binding protein FXR1 K15516 FMR; fragile X mental retardation protein
E 618127 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 518833 CYFIP2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100141021 CYFIP1; cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 540653 PCBP2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 613725 PCBP3; poly(rC)-binding protein 3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 506889 PCBP4; poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 535571 CAPRIN1; caprin-1 K18743 CAPRIN1; caprin-1
E 536187 CAPRIN2; caprin-2 isoform X8 K18744 CAPRIN2; caprin-2
E 287023 YBX1; Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 540834 XRN1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 406231 AGO3; protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 522972 AGO1; protein argonaute-1 isoform 1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 528046 AGO4; protein argonaute-4 isoform X2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 404130 AGO2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 281751 EIF4E; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 519920 EIF4E2; eukaryotic translation initiation factor 4E type 2 isoform 1 K03259 EIF4E; translation initiation factor 4E
E 614570 EIF4E1B; LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4E type 1B K03259 EIF4E; translation initiation factor 4E
E 532933 UPF1; regulator of nonsense transcripts 1 isoform X2 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 510093 DDX3X; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 783057 DDX3Y; DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 513906 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 529318 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 538945 MEX3D; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 539904 MEX3B; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 618154 MEX3A; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 509781 FASTK; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 529294 LSM14B; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 538838 LSM14A; protein LSM14 homolog A K18749 LSM14; protein LSM14
E 509917 PCBP1; poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 540653 PCBP2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 287023 YBX1; Y-box-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 617525 LIMD1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 519937 AJUBA; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 505059 WTIP; Wilms tumor protein 1-interacting protein K16682 AJUBA; LIM domain-containing protein
E 516043 APOBEC1; C->U-editing enzyme APOBEC-1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 504505 APOBEC3Z2; apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 507162 APOBEC3Z1; probable DNA dC->dU-editing enzyme APOBEC-3A K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 108771180 APOBEC3H; DNA dC->dU-editing enzyme APOBEC-3H K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 523206 MOV10; putative helicase MOV-10 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 767836 PNRC2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 767620 TNPO1; transportin-1 K18752 TNPO1; transportin-1
E 525143 SMG1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 513598 SMG5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 516411 SMG6; telomerase-binding protein EST1A K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 537131 SMG7; nonsense-mediated mRNA decay factor SMG7 K14409 SMG7; protein SMG7
E 282127 ZFP36; tristetraprolin K15308 TTP; tristetraprolin
E 614773 ZFP36L1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 767898 ZFP36L2; zinc finger protein 36, C3H1 type-like 2 K18753 ZFP36L; butyrate response factor
E 614997 LIN28A; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 112448101 LIN28B; protein lin-28 homolog B isoform X1 K18754 LIN28; protein lin-28
E 132343974 protein lin-28 homolog A-like K18754 LIN28; protein lin-28
E 615059 HTT; huntingtin isoform X1 K04533 HD; huntingtin
E 523408 IPO8; importin-8 K18755 IPO8; importin-8
E 537799 BICC1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 782669 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 505093 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 785761 heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101902301 heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100848353 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 614922 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 785445 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 112445996 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101902221 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 781499 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 615271 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A3-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 282322 PRKACA; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 282323 PRKACB; cAMP-dependent protein kinase catalytic subunit beta K04345 PKA; protein kinase A [EC:2.7.11.11]
E 515517 LARP1B; la-related protein 1B isoform X3 K18757 LARP1; la-related protein 1
E 505690 LARP1; la-related protein 1 K18757 LARP1; la-related protein 1
E 532649 ATXN2; ataxin-2 isoform X2 K23625 ATXN2_2L; ataxin 2/2L
E 539507 ATXN2L; ataxin-2-like protein K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 539770 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 783258 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 514548 DCP1B; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 535447 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 538662 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 614759 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 613634 LSM4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 615136 LSM5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 615916 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 107132243 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 509920 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 613630 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 508999 KLC1; kinesin light chain 1 K10407 KLC; kinesin light chain
E 517633 KLC3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 518136 KLC2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 767885 KLC4; kinesin light chain 4 K10407 KLC; kinesin light chain
E 514078 MYO5B; unconventional myosin-Vb isoform X2 K10357 MYO5; myosin V
E 532574 MYO5C; unconventional myosin-Vc K10357 MYO5; myosin V
E 541234 MYO5A; unconventional myosin-Va isoform X1 K10357 MYO5; myosin V
E 404053 TUBA1A; tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 504244 TUBA1C; tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 534900 TUBA3E; tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 535605 TUBA1D; tubulin alpha-1D chain K07374 TUBA; tubulin alpha
E 768036 TUBA8; tubulin alpha-8 chain K07374 TUBA; tubulin alpha
E 777775 TUBA4A; tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 782966 tubulin alpha-1 chain K07374 TUBA; tubulin alpha
E 100141266 tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 539882 TUBA1B; tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 100295712 tubulin alpha-3 chain isoform X1 K07374 TUBA; tubulin alpha
E 112443216 tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 514174 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 537016 CPEB3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 538794 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 538880 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 533444 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 506194 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 541118 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X2 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 528167 TNRC6B; trinucleotide repeat-containing gene 6B protein K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 504217 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X3 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 533968 CNOT1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 533945 CNOT2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 527305 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X2 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 540891 CNOT4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 534707 CNOT6; CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 518225 CNOT6L; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 508055 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 533443 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 617808 GARRE1; granule associated Rac and RHOG effector protein 1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 519222 DIS3L2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 538820 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 519743 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 281032 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 507934 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 519995 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 539364 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 541054 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 768016 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 514108 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X2 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 537453 PATL1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 517979 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 513171 EDC4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 100299090 NANOS2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 781181 UPF2; regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 616181 UPF3B; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 529442 UPF3A; regulator of nonsense transcripts 3A isoform X2 K14328 UPF3; regulator of nonsense transcripts 3
E 132342969 LOW QUALITY PROTEIN: regulator of nonsense transcripts 3A-like K14328 UPF3; regulator of nonsense transcripts 3
E 359715 TRIM21; E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 531886 TRIM71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 526320 POLR2G; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 347700 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 540150 ZAR1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 616037 ZAR1L; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 112447755 ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 519708 YTHDF3; YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein
E 538525 YTHDF1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 541050 YTHDF2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 614540 TIAL1; nucleolysin TIAR K13201 TIA1; nucleolysin TIA-1/TIAR
E 538533 TIA1; cytotoxic granule associated RNA binding protein TIA1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 282296 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 511286 PABPC5; polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 784438 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 509864 PABPC1L; polyadenylate-binding protein 1-like isoform X2 K13126 PABPC; polyadenylate-binding protein
E 521086 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 534576 PABPC4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 101908085 PABPC4L; polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 100125233 STAU2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 513944 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 507482 FMR1; fragile X mental retardation protein 1 K15516 FMR; fragile X mental retardation protein
E 536793 FXR1; RNA-binding protein FXR1 K15516 FMR; fragile X mental retardation protein
E 618127 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 508333 ZBP1; Z-DNA-binding protein 1 isoform X1 K12965 ZBP1; Z-DNA binding protein 1
E 617316 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 534214 G3BP1; ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 539249 G3BP2; ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 614746 EIF2A; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 789999 EIF3B; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 286819 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 504958 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 515145 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 505850 EIF4B; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 286870 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 444858 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 isoform X10 K03260 EIF4G; translation initiation factor 4G
E 534618 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X2 K03260 EIF4G; translation initiation factor 4G
E 533908 RPS6KA1; ribosomal protein S6 kinase alpha-1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 511190 RPS6KA3; ribosomal protein S6 kinase alpha-3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 526227 RPS6KA6; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 517953 RPS6KA2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 327682 RACK1; small ribosomal subunit protein RACK1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 512355 TRAF2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 512136 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 613789 NXF2; nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 615581 nuclear RNA export factor 3 isoform X1 K14284 NXF; nuclear RNA export factor
E 785244 LOW QUALITY PROTEIN: nuclear RNA export factor 3 K14284 NXF; nuclear RNA export factor
E 523530 NXF3; nuclear RNA export factor 3 isoform X1 K14284 NXF; nuclear RNA export factor
E 132344734 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 513602 HDAC6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 537918 TDRD3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
E 505723 LARP4B; la-related protein 4B K18763 LARP4; la-related protein 4
E 539286 LARP4; la-related protein 4 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 783258 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 514548 DCP1B; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 539770 DCP2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 513906 DDX6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 517979 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 513171 EDC4; enhancer of mRNA-decapping protein 4 isoform X1 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 537453 PATL1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 535447 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 538662 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 614759 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 613634 LSM4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 615136 LSM5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 615916 LSM6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 107132243 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 509920 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 613630 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 540834 XRN1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 517417 XRN2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 512320 NUDT16; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 282640 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 539501 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 506018 EXOSC1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 615712 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 533245 EXOSC3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 618292 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 100138962 EXOSC5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 100126247 EXOSC6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 100847343 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 532080 EXOSC8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 508005 EXOSC9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 767887 DIS3; exosome complex exonuclease RRP44 isoform X1 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 777771 DIS3L; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 535340 EXOSC10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 506667 C1D; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 512508 MPHOSPH6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 112447864 DDX60; LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 523016 TENT4A; terminal nucleotidyltransferase 4A K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 789894 TENT4B; terminal nucleotidyltransferase 4B isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 511821 ZCCHC7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 520256 MTREX; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 100139548 SKIC2; superkiller complex protein 2 K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 534095 SKIC3; superkiller complex protein 3 isoform X4 K12600 SKI3; superkiller protein 3
E 513208 SKIC8; superkiller complex protein 8 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 534707 CNOT6; CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 518225 CNOT6L; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 533968 CNOT1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 533945 CNOT2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 527305 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X2 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 540891 CNOT4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 508055 CNOT7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 533443 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 536537 CNOT9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 540938 CNOT10; CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 538820 PAN2; PAN2-PAN3 deadenylation complex catalytic subunit PAN2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 519743 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 524155 PARN; poly(A)-specific ribonuclease PARN K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 615807 PNLDC1; poly(A)-specific ribonuclease PNLDC1 isoform X3 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 509583 DHX36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 281032 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 507934 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 519995 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 539364 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 541054 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 768016 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 281095 CSF2; granulocyte-macrophage colony-stimulating factor precursor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 540641 NOCT; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 540728 ERI1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 785868 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 538719 ERI2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 282640 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 538860 PDE12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 539404 IREB2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 539501 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 100138828 NRDE2; nuclear exosome regulator NRDE2 K26109 NRDE2; nuclear exosome regulator NRDE2
E 540852 SAMD4A; protein Smaug homolog 1 K27396 SMG; protein Smaug
E 509172 SAMD4B; protein Smaug homolog 2 isoform X1 K27396 SMG; protein Smaug
E 506199 uncharacterized protein KIAA1797 homolog K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 282340 RNASE1; ribonuclease pancreatic precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 280930 RNASE1; seminal ribonuclease precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 100125948 RNASE2; non-secretory ribonuclease precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 280720 BRB; brain ribonuclease precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 517093 ribonuclease pancreatic K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 616089 RNASE4; ribonuclease 4 precursor K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 783195 ribonuclease 4-like K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 107132841 ribonuclease homolog K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 282341 RNASE6; ribonuclease K6 precursor K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 538679 ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 783267 ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 100300237 LOW QUALITY PROTEIN: ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 783426 RNASE11; probable ribonuclease 11 isoform X1 K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 535344 ZC3H12A; ribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 512586 ZC3H12C; probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 524199 ZC3H12B; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 615863 ZC3H12D; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 540168 DROSHA; ribonuclease 3 isoform X1 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 540139 REXO2; oligoribonuclease, mitochondrial precursor K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 281141 ENO1; alpha-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 540303 ENO3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 526006 ENO2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 508877 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 507119 PFKP; ATP-dependent 6-phosphofructokinase, platelet type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 506544 PFKM; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 508683 PFKL; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 517535 HSPA9; stress-70 protein, mitochondrial precursor K04043 dnaK; molecular chaperone DnaK
E 511913 HSPD1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 615712 EXOSC2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 506018 EXOSC1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 618292 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 100847343 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024