+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Yamadazyma tenuis
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E CANTEDRAFT_96658 mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E CANTEDRAFT_112302 Pkinase-domain-containing protein K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22]
E CANTEDRAFT_102816 Pkinase-domain-containing protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E CANTEDRAFT_114096 mRNA capping enzyme, alpha subunit K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50]
E CANTEDRAFT_135735 hypothetical protein K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74]
D Cap binding complex
E CANTEDRAFT_125733 hypothetical protein K12882 NCBP1; nuclear cap-binding protein subunit 1
E CANTEDRAFT_113854 RNA-binding domain-containing protein K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
E CANTEDRAFT_112565 hypothetical protein K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E CANTEDRAFT_102444 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E CANTEDRAFT_109087 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E CANTEDRAFT_98614 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E CANTEDRAFT_104212 Metallo-hydrolase/oxidoreductase K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E CANTEDRAFT_116139 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E CANTEDRAFT_116999 Fip1-domain-containing protein K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E CANTEDRAFT_132020 hypothetical protein K15541 MPE1; protein MPE1
E CANTEDRAFT_114864 WD40 repeat-like protein K15542 PFS2; polyadenylation factor subunit 2
E CANTEDRAFT_115240 WD40 repeat-like protein K14962 WDR82; COMPASS component SWD2
E CANTEDRAFT_113840 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E CANTEDRAFT_107158 Metallo-dependent phosphatase K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E CANTEDRAFT_108969 Metallo-dependent phosphatase K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E CANTEDRAFT_115141 Ssu72-like protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E CANTEDRAFT_92191 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E CANTEDRAFT_113492 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E CANTEDRAFT_99808 hypothetical protein K14408 CSTF3; cleavage stimulation factor subunit 3
E CANTEDRAFT_120101 hypothetical protein K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E CANTEDRAFT_119737 Sm-like ribonucleo protein K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E CANTEDRAFT_107251 hypothetical protein K11088 SNRPD3; small nuclear ribonucleoprotein D3
E CANTEDRAFT_98216 LSM-domain-containing protein K11097 SNRPE; small nuclear ribonucleoprotein E
E CANTEDRAFT_134081 hypothetical protein K11098 SNRPF; small nuclear ribonucleoprotein F
E CANTEDRAFT_98614 hypothetical protein K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E CANTEDRAFT_104212 Metallo-hydrolase/oxidoreductase K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E CANTEDRAFT_92191 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E CANTEDRAFT_113492 hypothetical protein K14407 CSTF2; cleavage stimulation factor subunit 2
E CANTEDRAFT_120101 hypothetical protein K06100 SYMPK; symplekin
D DRB sensitivity inducing factor (DSIF) complex
E CANTEDRAFT_112223 transcription initiation Spt4 K15171 SUPT4H1; transcription elongation factor SPT4
D N6-methyltransferase complex
E CANTEDRAFT_128415 MT-A70-domain-containing protein K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E CANTEDRAFT_110179 hypothetical protein K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
D Poly(A) addition factors
E CANTEDRAFT_94065 Poly(A) polymerase PAPalpha K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
D Negative regulators of mRNA 3' end processing
C Other processing factors
D CANTEDRAFT_113911 hypothetical protein K13102 KIN; DNA/RNA-binding protein KIN17
D CANTEDRAFT_114346 hypothetical protein K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E CANTEDRAFT_116388 hypothetical protein K12881 THOC4; THO complex subunit 4
E CANTEDRAFT_115343 hypothetical protein K12881 THOC4; THO complex subunit 4
E CANTEDRAFT_128604 ATP-dependent RNA helicase SUB2 K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E CANTEDRAFT_130105 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
D TREX complex
E CANTEDRAFT_118856 hypothetical protein K12879 THOC2; THO complex subunit 2
E CANTEDRAFT_124070 hypothetical protein K12880 THOC3; THO complex subunit 3
E CANTEDRAFT_116388 hypothetical protein K12881 THOC4; THO complex subunit 4
E CANTEDRAFT_115343 hypothetical protein K12881 THOC4; THO complex subunit 4
E CANTEDRAFT_136277 hypothetical protein K18712 HPR1; THO complex subunit HPR1
D TREX-2 complex
E CANTEDRAFT_112276 hypothetical protein K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E CANTEDRAFT_115314 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E CANTEDRAFT_97669 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E CANTEDRAFT_114254 EF-hand protein K16466 CETN3; centrin-3
E CANTEDRAFT_132234 mRNA export factor Sac3 K23719 SAC3; nuclear mRNA export protein SAC3
D Nuclear pore complex
E CANTEDRAFT_113250 WD40 repeat-like protein K14298 RAE1; mRNA export factor
E CANTEDRAFT_92334 protein transport protein SEC13 K14004 SEC13; protein transport protein SEC13
E CANTEDRAFT_101332 hypothetical protein K14304 NUP85; nuclear pore complex protein Nup85
E CANTEDRAFT_129312 NIC-domain-containing protein K14309 NUP93; nuclear pore complex protein Nup93
E CANTEDRAFT_98200 hypothetical protein K14301 NUP107; nuclear pore complex protein Nup107
E CANTEDRAFT_119662 hypothetical protein K14300 NUP133; nuclear pore complex protein Nup133
E CANTEDRAFT_111928 hypothetical protein K14311 NUP188; nuclear pore complex protein Nup188
E CANTEDRAFT_130107 hypothetical protein K14312 NUP155; nuclear pore complex protein Nup155
E CANTEDRAFT_111367 hypothetical protein K14310 NUP205; nuclear pore complex protein Nup205
E CANTEDRAFT_114312 hypothetical protein K14315 NDC1; nucleoporin NDC1
E CANTEDRAFT_108648 hypothetical protein K14299 SEH1; nucleoporin SEH1
E CANTEDRAFT_114302 MPPN-domain-containing protein K18717 ASM4; nucleoporin ASM4
E CANTEDRAFT_114563 hypothetical protein K18718 NUP60; nucleoporin NUP60
E CANTEDRAFT_94013 hypothetical protein K18719 NUP82; nucleoporin NUP82
E CANTEDRAFT_103810 Nucleoporin2-domain-containing protein K18720 NUP145; nucleoporin NUP145
E CANTEDRAFT_114254 EF-hand protein K16466 CETN3; centrin-3
E CANTEDRAFT_114251 NTF2-like protein K14284 NXF; nuclear RNA export factor
E CANTEDRAFT_120841 hypothetical protein K14543 MTR2; mRNA transport regulator MTR2
E CANTEDRAFT_114035 hypothetical protein K18724 POM34; nucleoporin POM34
E CANTEDRAFT_101861 hypothetical protein K18725 POM152; nucleoporin POM152
E CANTEDRAFT_114502 BAG domain-containing protein K14017 SNL1; HSP70 co-chaperone SNL1
D Ran-mediated transport factors
E CANTEDRAFT_113416 hypothetical protein K07936 RAN; GTP-binding nuclear protein Ran
E CANTEDRAFT_102781 hypothetical protein K18726 FAF2; FAS-associated factor 2
E CANTEDRAFT_105619 hypothetical protein K13525 VCP; transitional endoplasmic reticulum ATPase
E CANTEDRAFT_128311 hypothetical protein K14290 XPO1; exportin-1
E CANTEDRAFT_114061 RNI-like protein K14319 RANGAP1; Ran GTPase-activating protein 1
E CANTEDRAFT_135600 hypothetical protein K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E CANTEDRAFT_115945 eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E CANTEDRAFT_111881 ARM repeat-containing protein K03260 EIF4G; translation initiation factor 4G
E CANTEDRAFT_136165 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E CANTEDRAFT_92490 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E CANTEDRAFT_136776 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E CANTEDRAFT_100985 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E CANTEDRAFT_121553 Sec63-domain-containing protein K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6]
E CANTEDRAFT_111749 hypothetical protein K07575 MCTS; malignant T-cell-amplified sequence
E CANTEDRAFT_113105 translation machinery-associated protein 22 K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
D Other transport factors
E CANTEDRAFT_128081 hypothetical protein K14416 HBS1; elongation factor 1 alpha-like protein
E CANTEDRAFT_109220 hypothetical protein K06965 PELO; protein pelota
E CANTEDRAFT_115982 RNA-binding domain-containing protein K14396 PABPN1; polyadenylate-binding protein 2
E CANTEDRAFT_99577 DEAD-domain-containing protein K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E CANTEDRAFT_133563 hypothetical protein K12867 SYF1; pre-mRNA-splicing factor SYF1
E CANTEDRAFT_110409 hypothetical protein K18732 SARNP; SAP domain-containing ribonucleoprotein
E CANTEDRAFT_123263 RCC1/BLIP-II K11493 RCC1; regulator of chromosome condensation
E CANTEDRAFT_132937 hypothetical protein K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E CANTEDRAFT_130352 hypothetical protein K03265 ETF1; peptide chain release factor subunit 1
E CANTEDRAFT_131853 hypothetical protein K03267 ERF3; peptide chain release factor subunit 3
D Protein phosphatase 2A
E CANTEDRAFT_99314 Metallo-dependent phosphatase K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E CANTEDRAFT_105138 ARM repeat-containing protein K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E CANTEDRAFT_100120 protein phosphatase 2A regulatory subunit PR55 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E CANTEDRAFT_120431 protein phosphatase 2A regulatory B subunit K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E CANTEDRAFT_92490 hypothetical protein K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
C Factors involved in mRNA localization
D Cargo complex
E CANTEDRAFT_136383 hypothetical protein K18737 SHE3; SWI5-dependent HO expression protein 3
E CANTEDRAFT_105299 hypothetical protein K14844 PUF6; pumilio homology domain family member 6
E CANTEDRAFT_104592 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E CANTEDRAFT_93908 hypothetical protein K18738 HEK; heterogeneous nuclear rnp K-like protein
E CANTEDRAFT_134124 hypothetical protein K18658 ASH1; transcriptional regulatory protein ASH1
D Factors that have mRNA localization signals
D Trans-acting binding proteins
E CANTEDRAFT_132743 hypothetical protein K03231 EEF1A; elongation factor 1-alpha
E CANTEDRAFT_121360 hypothetical protein K03231 EEF1A; elongation factor 1-alpha
E CANTEDRAFT_112790 eEF1-gamma domain-containing protein K03233 EEF1G; elongation factor 1-gamma
D Other mRNA localization factors
E CANTEDRAFT_113857 RNB-domain-containing protein K18748 SSD1; protein SSD1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E CANTEDRAFT_115945 eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E CANTEDRAFT_110030 dead Box protein Dhh1p K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E CANTEDRAFT_113891 hypothetical protein K18749 LSM14; protein LSM14
E CANTEDRAFT_131548 ARM repeat-containing protein K18752 TNPO1; transportin-1
E CANTEDRAFT_116383 kinase-like protein K04345 PKA; protein kinase A [EC:2.7.11.11]
E CANTEDRAFT_113649 kinase-like protein K04345 PKA; protein kinase A [EC:2.7.11.11]
D P-body specific factors
E CANTEDRAFT_91496 DCP2-domain-containing protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E CANTEDRAFT_115810 decapping protein K12612 DCP1; mRNA-decapping enzyme subunit 1
E CANTEDRAFT_96781 Sm-like ribonucleo protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E CANTEDRAFT_128123 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E CANTEDRAFT_98296 LSM-domain-containing protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E CANTEDRAFT_95092 Sm-like ribonucleo protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E CANTEDRAFT_116517 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E CANTEDRAFT_116192 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E CANTEDRAFT_93013 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E CANTEDRAFT_124295 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E CANTEDRAFT_118886 hypothetical protein K07374 TUBA; tubulin alpha
E CANTEDRAFT_117969 Not1-domain-containing protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E CANTEDRAFT_115002 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E CANTEDRAFT_117398 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E CANTEDRAFT_92168 Not3-domain-containing protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E CANTEDRAFT_99986 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E CANTEDRAFT_117384 glucose-repressible alcohol dehydrogenase transcriptional effector K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E CANTEDRAFT_112471 ribonuclease H-like protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E CANTEDRAFT_109443 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E CANTEDRAFT_114886 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E CANTEDRAFT_108761 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E CANTEDRAFT_116408 hypothetical protein K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2
E CANTEDRAFT_97558 YjeF N-terminal domain-like protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E CANTEDRAFT_112179 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
D Stress granule specific factors
E CANTEDRAFT_95568 RNA-binding domain-containing protein K13201 TIA1; nucleolysin TIA-1/TIAR
E CANTEDRAFT_136776 hypothetical protein K13126 PABPC; polyadenylate-binding protein
E CANTEDRAFT_128247 hypothetical protein K15026 EIF2A; translation initiation factor 2A
E CANTEDRAFT_113712 dipeptidyl peptidase IV/CD26, N-terminal domain-containing protein K03253 EIF3B; translation initiation factor 3 subunit B
E CANTEDRAFT_130105 hypothetical protein K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E CANTEDRAFT_136165 hypothetical protein K03258 EIF4B; translation initiation factor 4B
E CANTEDRAFT_111881 ARM repeat-containing protein K03260 EIF4G; translation initiation factor 4G
E CANTEDRAFT_128165 WD40 repeat-like protein K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E CANTEDRAFT_114251 NTF2-like protein K14284 NXF; nuclear RNA export factor
E CANTEDRAFT_118275 hypothetical protein K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E CANTEDRAFT_115810 decapping protein K12612 DCP1; mRNA-decapping enzyme subunit 1
E CANTEDRAFT_91496 DCP2-domain-containing protein K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E CANTEDRAFT_110030 dead Box protein Dhh1p K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E CANTEDRAFT_116408 hypothetical protein K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2
E CANTEDRAFT_97558 YjeF N-terminal domain-like protein K12615 EDC3; enhancer of mRNA-decapping protein 3
E CANTEDRAFT_108761 hypothetical protein K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E CANTEDRAFT_96781 Sm-like ribonucleo protein K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E CANTEDRAFT_128123 U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E CANTEDRAFT_98296 LSM-domain-containing protein K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E CANTEDRAFT_95092 Sm-like ribonucleo protein K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E CANTEDRAFT_116517 hypothetical protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E CANTEDRAFT_116192 U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E CANTEDRAFT_93013 U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E CANTEDRAFT_124295 hypothetical protein K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
D Other 5'-3' decay factors
E CANTEDRAFT_116751 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
C 3'-5' decay
D Core exosome factors
E CANTEDRAFT_93806 hypothetical protein K07573 CSL4; exosome complex component CSL4
E CANTEDRAFT_114297 hypothetical protein K03679 RRP4; exosome complex component RRP4
E CANTEDRAFT_114211 hypothetical protein K03681 RRP40; exosome complex component RRP40
E CANTEDRAFT_114736 hypothetical protein K11600 RRP41; exosome complex component RRP41
E CANTEDRAFT_98824 hypothetical protein K12590 RRP46; exosome complex component RRP46
E CANTEDRAFT_105628 hypothetical protein K12587 MTR3; exosome complex component MTR3
E CANTEDRAFT_105839 hypothetical protein K12589 RRP42; exosome complex component RRP42
E CANTEDRAFT_112431 hypothetical protein K12586 RRP43; exosome complex component RRP43
E CANTEDRAFT_91712 ribosomal protein S5 domain 2-like protein K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E CANTEDRAFT_128954 hypothetical protein K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E CANTEDRAFT_95891 hypothetical protein K12592 C1D; exosome complex protein LRP1
E CANTEDRAFT_115661 hypothetical protein K12594 MPP6; M-phase phosphoprotein 6, fungi type
D TRAMP complex
E CANTEDRAFT_126141 hypothetical protein K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E CANTEDRAFT_101051 hypothetical protein K12597 AIR1_2; protein AIR1/2
E CANTEDRAFT_118199 antiviral helicase K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E CANTEDRAFT_100985 hypothetical protein K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E CANTEDRAFT_92479 protein prenylyltransferase K12600 SKI3; superkiller protein 3
E CANTEDRAFT_106444 WD40 repeat-like protein K12601 SKI8; superkiller protein 8
D Ccr4-NOT complex
E CANTEDRAFT_117384 glucose-repressible alcohol dehydrogenase transcriptional effector K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E CANTEDRAFT_117969 Not1-domain-containing protein K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E CANTEDRAFT_115002 hypothetical protein K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E CANTEDRAFT_117398 hypothetical protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E CANTEDRAFT_92168 Not3-domain-containing protein K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E CANTEDRAFT_99986 hypothetical protein K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E CANTEDRAFT_112471 ribonuclease H-like protein K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E CANTEDRAFT_114078 Rcd1-like protein K12606 RCD1; CCR4-NOT transcription complex subunit 9
E CANTEDRAFT_115613 P-loop containing nucleoside triphosphate hydrolase protein K12608 CAF16; CCR4-NOT complex subunit CAF16
D Pan complex
E CANTEDRAFT_109443 hypothetical protein K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E CANTEDRAFT_114886 hypothetical protein K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E CANTEDRAFT_116751 hypothetical protein K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E CANTEDRAFT_136197 hypothetical protein K27407 VTS1; RNA-binding protein VTS1
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E CANTEDRAFT_94123 hypothetical protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
E CANTEDRAFT_100638 ribonuclease H-like protein K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E CANTEDRAFT_93616 enolase I K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E CANTEDRAFT_129211 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E CANTEDRAFT_119542 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E CANTEDRAFT_100988 hypothetical protein K04043 dnaK; molecular chaperone DnaK
E CANTEDRAFT_102936 heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
E CANTEDRAFT_115422 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E CANTEDRAFT_114297 hypothetical protein K03679 RRP4; exosome complex component RRP4
E CANTEDRAFT_93806 hypothetical protein K07573 CSL4; exosome complex component CSL4
D Cofactors
E CANTEDRAFT_114736 hypothetical protein K11600 RRP41; exosome complex component RRP41
E CANTEDRAFT_105839 hypothetical protein K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024