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Transcription Machinery - Dictyostelium discoideum (cellular slime mold)
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E DDB_G0279193 rpb1; RNA polymerase II core subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E DDB_G0288257 rpb2; RNA polymerase II core subunit K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E DDB_G0292244 rpb3; RNA polymerase II core subunit K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E DDB_G0277677 rpb11; RNA polymerase II core subunit K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E DDB_G0282739 rpb4; DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E DDB_G0284891 rpb7; DNA-directed RNA polymerase II subunit 7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E DDB_G0268306 rpb9; RNA polymerase II core subunit K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E DDB_G0291636 rpb5; RNA polymerase I core subunit K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E DDB_G0291037 rpb6; RNA polymerase I core subunit K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E DDB_G0278039 rpb8; RNA polymerase I core subunit K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E DDB_G0283365 rpb12; RNA polymerase I core subunit K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E DDB_G0272036 rpb10; RNA polymerase I core subunit K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E DDB_G0290327 gtf2a1; transcription factor IIA, large chain K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E DDB_G0285343 gtf2a2; transcription factor IIA, small chain K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E DDB_G0290929 gtf2b; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E DDB_G0275617 tbpA; TATA-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E DDB_G0292242 taf1; HAF group protein K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1]
E DDB_G0292724 taf2; TFIID subunit K03128 TAF2; transcription initiation factor TFIID subunit 2
E DDB_G0279179 hypothetical protein K03129 TAF4; transcription initiation factor TFIID subunit 4
E DDB_G0287337 taf5; TFIID subunit K03130 TAF5; transcription initiation factor TFIID subunit 5
E DDB_G0288471 taf6; TATA-binding protein-associated-factor K03131 TAF6; transcription initiation factor TFIID subunit 6
E DDB_G0285493 hypothetical protein K14649 TAF8; transcription initiation factor TFIID subunit 8
E DDB_G0278843 taf11; TFIID subunit K03135 TAF11; transcription initiation factor TFIID subunit 11
E DDB_G0274697 taf12; TFIID subunit K03126 TAF12; transcription initiation factor TFIID subunit 12
E DDB_G0292838 taf13; TFIID subunit K03127 TAF13; transcription initiation factor TFIID subunit 13
D TFIIE
E DDB_G0273525 gtf2e1-1; transcription factor IIE K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E DDB_G0273583 gtf2e1-2; transcription factor IIE K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E DDB_G0287307 gtf2e2; transcription initiation factor IIE subunit beta K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E DDB_G0279377 gtf2f1; transcription initiation factor IIF subunit alpha K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E DDB_G0287131 gtf2f2; TFIIF subunit K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E DDB_G0268014 gtf2h1; general transcription factor IIH component K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E DDB_G0272362 gtf2h2; TFIIH subunit K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E DDB_G0275517 gtf2h3; general transcription factor IIH, polypeptide 3 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E DDB_G0293228 gtf2h4; TFIIH subunit K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E DDB_G0278729 repB; transcription factor IIH subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E DDB_G0267414 repD; transcription factor IIH component K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E DDB_G0269906 gtf2h5; transcription initiation factor IIH5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E DDB_G0285417 cdk7; CDK family protein kinase K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E DDB_G0289079 mnat1; CDK-activating kinase assembly factor MAT1 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E DDB_G0268668 cycH; hypothetical protein K06634 CCNH; cyclin H
C Mediator complex
D Head
E DDB_G0284421 med6; hypothetical protein K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E DDB_G0285713 med18; hypothetical protein K15135 MED18; mediator of RNA polymerase II transcription subunit 18
E DDB_G0290781 med20; hypothetical protein K13528 MED20; mediator of RNA polymerase II transcription subunit 20
E DDB_G0279087 med22; hypothetical protein K15139 MED22; mediator of RNA polymerase II transcription subunit 22
E DDB_G0292324 med28; hypothetical protein K15141 MED28; mediator of RNA polymerase II transcription subunit 28
D Middle
E DDB_G0292608 med4; hypothetical protein K15146 MED4; mediator of RNA polymerase II transcription subunit 4
E DDB_G0269568 med7; hypothetical protein K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E DDB_G0290209 med10; hypothetical protein K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E DDB_G0289339 med21; hypothetical protein K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E DDB_G0285221 med31; hypothetical protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E DDB_G0291297 med14; hypothetical protein K15156 MED14; mediator of RNA polymerase II transcription subunit 14
D CDK-module
E DDB_G0267442 cdk8; CDK family protein kinase K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E DDB_G0274139 cycC; hypothetical protein K15161 CCNC; cyclin-C
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
E DDB_G0283459 gcn5; GCN5-related N-acetyltransferase K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E DDB_G0281947 tra1; PIKK family protein kinase K08874 TRRAP; transformation/transcription domain-associated protein
E DDB_G0280079 SWIRM domain-containing protein K11314 TADA2A; transcriptional adapter 2-alpha
E DDB_G0292724 taf2; TFIID subunit K03128 TAF2; transcription initiation factor TFIID subunit 2
E DDB_G0279179 hypothetical protein K03129 TAF4; transcription initiation factor TFIID subunit 4
E DDB_G0287337 taf5; TFIID subunit K03130 TAF5; transcription initiation factor TFIID subunit 5
E DDB_G0288471 taf6; TATA-binding protein-associated-factor K03131 TAF6; transcription initiation factor TFIID subunit 6
E DDB_G0274697 taf12; TFIID subunit K03126 TAF12; transcription initiation factor TFIID subunit 12
E DDB_G0272054 DUF1325 family protein K11364 SGF29; SAGA-associated factor 29
E DDB_G0284171 CHR group protein K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E DDB_G0289573 hypothetical protein K11368 ENY2; enhancer of yellow 2 transcription factor
E DDB_G0271798 UBP-type zinc finger-containing protein K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E DDB_G0282569 sf3b3; CPSF domain-containing protein K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E DDB_G0285205 CHR group protein K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E DDB_G0271052 CHR group protein K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
E DDB_G0279373 CHE group protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E DDB_G0277033 SWIRM domain-containing protein K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E DDB_G0273203 snf12-1; CHC group protein K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E DDB_G0273725 snf12-2; CHC group protein K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E DDB_G0280887 arpD; actin related protein 4 K11340 ACTL6A; actin-like protein 6A
D SWI/SNF complex
E DDB_G0279373 CHE group protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
D RSC complex
D Others
E DDB_G0275335 ssDNA-binding transcriptional regulator K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
C Other transcription-related factors
D Transcription elongation factors
E DDB_G0278241 tcea1; RNA polymerase II elongation factor K03145 TFIIS; transcription elongation factor S-II
E DDB_G0285293 spt4; transcription initiation factor Spt4 K15171 SUPT4H1; transcription elongation factor SPT4
E DDB_G0287661 spt5; transcription initiation factor Spt5 K15172 SUPT5H; transcription elongation factor SPT5
E DDB_G0272354 spt6; SH2 domain-containing protein K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E DDB_G0281585 cpsf1; CPSF domain-containing protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E DDB_G0274799 cpsf3; DNA repair metallo-beta-lactamase domain-containing protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E DDB_G0270148 cpsf4; CCCH-type zinc finger-containing protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E DDB_G0275619 pppB; protein phosphatase 1, catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E DDB_G0284319 sympk; hypothetical protein K06100 SYMPK; symplekin
E DDB_G0272871 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E DDB_G0269922 xrn2; 5'-3' exoribonuclease K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E DDB_G0289921 hypothetical protein K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E DDB_G0269278 hypothetical protein K14845 RAI1; RAT1-interacting protein
E DDB_G0285243 hypothetical protein K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3]
E DDB_G0268618 pinA; hypothetical protein K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E DDB_G0269412 paf1; RNA polymerase II-associated factor 1 K15174 PAF1; RNA polymerase II-associated factor 1
E DDB_G0274885 cdc73; RNA polymerase II complex component K15175 CDC73; parafibromin
E DDB_G0277841 ctr9; RNA polymerase II complex component K15176 CTR9; RNA polymerase-associated protein CTR9
E DDB_G0286051 leo1; RNA polymerase II complex component K15177 LEO1; RNA polymerase-associated protein LEO1
E DDB_G0286523 hypothetical protein K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
E DDB_G0284195 hypothetical protein K15180 COBRA1; negative elongation factor B
E DDB_G0268678 TH1 family protein K15181 TH1L; negative elongation factor C/D
D Super elongation complex (SEC)
E DDB_G0286617 cycK; hypothetical protein K15188 CCNT; cyclin T
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
E DDB_G0286617 cycK; hypothetical protein K15188 CCNT; cyclin T
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
E DDB_G0267954 hypothetical protein K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
E DDB_G0286617 cycK; hypothetical protein K15188 CCNT; cyclin T
D DBIRD complex
D Others
E DDB_G0286219 CHR group protein K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E DDB_G0269638 dr1; hypothetical protein K21751 DR1; down-regulator of transcription 1
E DDB_G0271690 hypothetical protein K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E DDB_G0294376 fcpA; hypothetical protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E DDB_G0286143 dullard-like phosphatase domain containing protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E DDB_G0274327 IWS1 family protein K17498 SPN1; transcription factor SPN1
E DDB_G0280209 hypothetical protein K20826 RPAP1; RNA polymerase II-associated protein 1
E DDB_G0275113 hypothetical protein K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E DDB_G0282885 hypothetical protein K23002 RPAP3; RNA polymerase II-associated protein 3
E DDB_G0282189 tupA; transcriptional repressor TUP1 K06666 TUP1; general transcriptional corepressor TUP1
E DDB_G0281387 srfA; MADS-box transcription factor K12412 MCM1; pheromone receptor transcription factor
E DDB_G0285197 gpn3; GPN-loop GTPase 3 K24104 GPN; GPN-loop GTPase
E DDB_G0281787 gpn2; GPN-loop GTPase 2 K24104 GPN; GPN-loop GTPase
E DDB_G0293220 gpn1; AAA ATPase domain-containing protein K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E DDB_G0277199 rpc1; RNA polymerase III, largest subunit K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E DDB_G0288449 rpc2; RNA polymerase III, second largest subunit K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E DDB_G0282339 rpa5; RNA polymerase I subunit K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E DDB_G0291362 rpc19; hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E DDB_G0268080 rpc3; RNA polymerase III subunit K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E DDB_G0271514 rpc5; RNA polymerase III subunit K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E DDB_G0272022 rpc34; RNA polymerase III subunit K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E DDB_G0273425 rpc25-1; RNA polymerase III subunit K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E DDB_G0273523 rpc25-2; RNA polymerase III subunit K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E DDB_G0287707 rpc11; RNA polymerase III subunit K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E DDB_G0291636 rpb5; RNA polymerase I core subunit K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E DDB_G0291037 rpb6; RNA polymerase I core subunit K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E DDB_G0278039 rpb8; RNA polymerase I core subunit K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E DDB_G0283365 rpb12; RNA polymerase I core subunit K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E DDB_G0272036 rpb10; RNA polymerase I core subunit K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E DDB_G0281085 TFIIIA; C2H2-type zinc finger-containing protein K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E DDB_G0275617 tbpA; TATA-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E DDB_G0281215 brf1; TATA box-binding protein-associated factor, RNA polymerase III, subunit 2 K15196 BRF1; transcription factor IIIB 90 kDa subunit
E DDB_G0283405 bdp1; myb domain-containing protein K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E DDB_G0278321 TFIIIC3; transcription factor IIIC-gamma subunit K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E DDB_G0289935 gtf3c5; transcription factor IIIC-epsilon subunit K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
D TFIIIC, fungi type
E DDB_G0289935 gtf3c5; transcription factor IIIC-epsilon subunit K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E DDB_G0278321 TFIIIC3; transcription factor IIIC-gamma subunit K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E DDB_G0267574 hypothetical protein K15206 TFC7; transcription factor C subunit 7
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E DDB_G0274687 hypothetical protein K15210 SNAPC3; snRNA-activating protein complex subunit 3
D Octamer transcription factors
D Others
E DDB_G0278673 maf1; repressor of RNA polymerase III transcription K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E DDB_G0275759 rpa1; RNA polymerase I, largest subunit K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
E DDB_G0293560 rpa2; RNA polymerase I, second largest subunit K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E DDB_G0282339 rpa5; RNA polymerase I subunit K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E DDB_G0291362 rpc19; hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E DDB_G0290909 rpa49; hypothetical protein K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E DDB_G0268198 rpa43; RNA polymerase I subunit K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
D Pol I, II, III common subunits
E DDB_G0291636 rpb5; RNA polymerase I core subunit K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E DDB_G0291037 rpb6; RNA polymerase I core subunit K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E DDB_G0278039 rpb8; RNA polymerase I core subunit K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E DDB_G0283365 rpb12; RNA polymerase I core subunit K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E DDB_G0272036 rpb10; RNA polymerase I core subunit K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E DDB_G0275617 tbpA; TATA-binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C Other transcription-related factors
D UBF
D Transcription initiation factors
E DDB_G0289587 hypothetical protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
D Transcription elongation factors
E DDB_G0285293 spt4; transcription initiation factor Spt4 K15171 SUPT4H1; transcription elongation factor SPT4
E DDB_G0287661 spt5; transcription initiation factor Spt5 K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E DDB_G0292948 isw; ATP-dependent chromatin-remodelling factor K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E DDB_G0290929 gtf2b; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E DDB_G0273525 gtf2e1-1; transcription factor IIE K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E DDB_G0273583 gtf2e1-2; transcription factor IIE K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024